51
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A biophysical strategy to examine the impact of newly synthesized polymerizable ammonium-based ionic liquids on the structural stability and proteolytic activity of stem bromelain. Int J Biol Macromol 2020; 151:957-966. [DOI: 10.1016/j.ijbiomac.2019.10.208] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 10/14/2019] [Accepted: 10/24/2019] [Indexed: 11/23/2022]
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52
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Pedersen JN, Liu S, Zhou Y, Balle T, Xu X, Guo Z. Synergistic effects of binary ionic liquid-solvent systems on enzymatic esterification of esculin. Food Chem 2020; 310:125858. [DOI: 10.1016/j.foodchem.2019.125858] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 11/02/2019] [Accepted: 11/03/2019] [Indexed: 10/25/2022]
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53
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Khoshnevis N, Rezaei S, Forootanfar H, Faramarzi MA. Efficient Keratinolysis of Poultry Feather Waste by the Halotolerant Keratinase from Salicola Marasensis. IRANIAN JOURNAL OF PHARMACEUTICAL RESEARCH : IJPR 2020; 18:1862-1870. [PMID: 32184853 DOI: 10.22037/ijpr.2019.111710.13312] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Sustainable development in the bio-treatment of large-scale biomass bulks requires high performance enzymes adapted to extreme conditions. An extracellular keratinolytic extract was obtained from the culture broth of a halotolerant strain of Salicola marasensis. Keratin hydrolyzing activity of the concentrated enzyme extract was observed on a 100 mg of pretreated feather waste. The concentrated enzyme was able to hydrolyze the poultry feathers by 25% after 12 h incubation. The bio-waste material was optimally hydrolyzed at pH 9 and temperature of 40 °C. Among reductants, 1,4-dithiothreitol, L-cysteine, 2-mercaptoethanol, glutathione, and sodium sulfate showed the most remarkable effect on the bio-waste keratinolysis, while the tested surfactants and urea had no significant effect on the keratinolytic activity. Hexane and hexadecane indicated strong effect on keratinase activity and bio-treatment in the presence of 1-butyl-3-methylimidazolium hexafluorophosphate ([BMIM][PF6]) as a hydrophobic ionic liquid resulted in a maximal of 80% extraction yield of soluble proteins from feathers. Considering the stability of the extracellular keratinolytic content in [BMIM][PF6], the observed keratinase activity was noteworthy suggesting that the secreted enzyme may contribute to the bioconversion of feather wastes.
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Affiliation(s)
- Nika Khoshnevis
- Department of Pharmaceutical Biotechnology, Faculty of Pharmacy, Tehran University of Medical Sciences, Tehran, Iran
| | - Shahla Rezaei
- Department of Pharmaceutical Biotechnology, Faculty of Pharmacy, Tehran University of Medical Sciences, Tehran, Iran
| | - Hamid Forootanfar
- Department of Pharmaceutical Biotechnology, Faculty of Pharmacy, Kerman University of Medical Sciences, Kerman, Iran
| | - Mohammad Ali Faramarzi
- Department of Pharmaceutical Biotechnology, Faculty of Pharmacy, Tehran University of Medical Sciences, Tehran, Iran
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54
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Saha S, Sannigrahi A, Chattopadhyay K, Chowdhury J. Interaction of KMP-11 and its mutants with ionic liquid choline dihydrogen phosphate: Multispectroscopic studies aided by docking and molecular dynamics simulations. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.112475] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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55
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Elgharbawy AA, Moniruzzaman M, Goto M. Recent advances of enzymatic reactions in ionic liquids: Part II. Biochem Eng J 2020. [DOI: 10.1016/j.bej.2019.107426] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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56
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Divya MB, Guruprasad L. Activity and thermal stability of Mycobacterium tuberculosis PE1 and PE2 proteins esterase domain in the presence of aprotic ionic liquids. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 225:117477. [PMID: 31470344 DOI: 10.1016/j.saa.2019.117477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Revised: 08/17/2019] [Accepted: 08/17/2019] [Indexed: 06/10/2023]
Abstract
An ionic liquid (IL) is a salt in which the ions are poorly coordinated, resulting in these solvents being liquid below 100 °C or even at room temperature. ILs generally consist of large sized anions and cations, have certain unique advantageous properties and hence are considered as 'green solvents'. Thermal stability of the α/β-serine hydrolase (SH) domain in PE1 and PE2 proteins of Mycobacterium tuberculosis (M.tb) possessing esterase activity was studied in the presence of aprotic ILs consisting of imidazolium cations and anions. Addition of ILs to an aqueous solution of proteins prevented their unfolding and aggregation at higher temperatures. The thermal denaturation curve of proteins with ILs shifted to higher temperatures compared to the absence of ILs from CD spectra. The remaining activities of PE1/PE2 proteins with 1.4 M [EMIM][BF4], [EMIM][Cl], [BMIM][BF4] and [BMIM][Cl] exhibited 100%/100%, 58.96%/58.84%, 78.92%/78.94% and 54.63%/54.92% greater activities, respectively after the heat treatment at 30 °C for 35 min. We conclude that the remaining activities of both proteins are sufficiently maintained after the heat treatment and this depends upon the nature, concentration of ILs, and the thermal incubation time. Specifically, [EMIM][BF4] and [BMIM][BF4] exhibit higher thermal stabilization compared to [EMIM][Cl] and [BMIM][Cl].
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Affiliation(s)
- M Bala Divya
- School of Chemistry, University of Hyderabad, Hyderabad, Telangana 500046, India
| | - Lalitha Guruprasad
- School of Chemistry, University of Hyderabad, Hyderabad, Telangana 500046, India.
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57
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Kumar PK, Jha I, Sindhu A, Venkatesu P, Bahadur I, Ebenso EE. Experimental and molecular docking studies in understanding the biomolecular interactions between stem bromelain and imidazolium-based ionic liquids. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2019.111785] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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58
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Yalcin D, Christofferson AJ, Drummond CJ, Greaves TL. Solvation properties of protic ionic liquid–molecular solvent mixtures. Phys Chem Chem Phys 2020; 22:10995-11011. [DOI: 10.1039/d0cp00201a] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
In this study, we have investigated the solvation properties of binary mixtures of PILs with molecular solvents. The selected binary solvent systems are the PILs ethylammonium nitrate (EAN) and propylammonium nitrate (PAN) combined with either water, methanol, acetonitrile or DMSO.
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Affiliation(s)
- Dilek Yalcin
- School of Science
- College of Science
- Engineering and Health
- RMIT University
- Melbourne
| | | | - Calum J. Drummond
- School of Science
- College of Science
- Engineering and Health
- RMIT University
- Melbourne
| | - Tamar L. Greaves
- School of Science
- College of Science
- Engineering and Health
- RMIT University
- Melbourne
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59
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Stevens JC, Shi J. Biocatalysis in ionic liquids for lignin valorization: Opportunities and recent developments. Biotechnol Adv 2019; 37:107418. [DOI: 10.1016/j.biotechadv.2019.107418] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Revised: 05/13/2019] [Accepted: 07/15/2019] [Indexed: 01/11/2023]
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60
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Takalloo Z, Niknaddaf F, Shahangian SS, Heydari A, Hosseinkhani S, H Sajedi R. Modulation of the competition between renaturation and aggregation of lysozyme by additive mixtures. Biotechnol Appl Biochem 2019; 67:330-342. [PMID: 31758724 DOI: 10.1002/bab.1864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Accepted: 11/15/2019] [Indexed: 11/10/2022]
Abstract
The effects of 17 kinds of additive mixtures have been studied on refolding and aggregation of a model protein, lysozyme. Most of the prepared mixtures were efficient in inhibiting aggregation of the protein, and, surprisingly, four novel additive mixtures, i.e., lactic acid: l-arginine, lactic acid: l-glutamine, choline chloride: lactic acid, and imidazolium salt: β-cyclodextrin as well as choline chloride: urea exhibited a more remarkable efficacy in suppressing aggregation. Among these, lactic acid: l-arginine was identified as the most efficient additive, and lactic acid: l-glutamine and choline chloride: lactic acid were inefficient to recover the enzyme activity. In contrast, choline chloride: ethylene glycol: imidazole, choline chloride: glycerol: imidazole, imidazole: betaine: ethylene glycol were found to be less effective mixtures in preventing enzyme aggregation. Totally, it was demonstrated that the protective effects of the mixtures were improved as their concentrations increased. The improvement was more remarkable for imidazolium salt: β-cyclodextrin and choline chloride: urea, where the denatured lysozyme was reactivated and recovered up to 85% of its initial activity by enhancing their concentrations from 1 to 5% (V/V). It is suggested that such solution additives may be further employed as artificial chaperones to assist protein folding and stability.
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Affiliation(s)
- Zeinab Takalloo
- Department of Biochemistry, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran
| | - Forouzan Niknaddaf
- Department of Biochemistry, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran
| | - S Shirin Shahangian
- Department of Biology, Faculty of Sciences, University of Guilan, Rasht, Gilan, Iran
| | - Akbar Heydari
- Department of Chemistry, Faculty of Basic Sciences, Tarbiat Modares University, Tehran, Iran
| | - Saman Hosseinkhani
- Department of Biochemistry, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran
| | - Reza H Sajedi
- Department of Biochemistry, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran
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61
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Baker SL, Kaupbayeva B, Lathwal S, Das SR, Russell AJ, Matyjaszewski K. Atom Transfer Radical Polymerization for Biorelated Hybrid Materials. Biomacromolecules 2019; 20:4272-4298. [PMID: 31738532 DOI: 10.1021/acs.biomac.9b01271] [Citation(s) in RCA: 54] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Proteins, nucleic acids, lipid vesicles, and carbohydrates are the major classes of biomacromolecules that function to sustain life. Biology also uses post-translation modification to increase the diversity and functionality of these materials, which has inspired attaching various other types of polymers to biomacromolecules. These polymers can be naturally (carbohydrates and biomimetic polymers) or synthetically derived and have unique properties with tunable architectures. Polymers are either grafted-to or grown-from the biomacromolecule's surface, and characteristics including polymer molar mass, grafting density, and degree of branching can be controlled by changing reaction stoichiometries. The resultant conjugated products display a chimerism of properties such as polymer-induced enhancement in stability with maintained bioactivity, and while polymers are most often conjugated to proteins, they are starting to be attached to nucleic acids and lipid membranes (cells) as well. The fundamental studies with protein-polymer conjugates have improved our synthetic approaches, characterization techniques, and understanding of structure-function relationships that will lay the groundwork for creating new conjugated biomacromolecular products which could lead to breakthroughs in genetic and tissue engineering.
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Affiliation(s)
- Stefanie L Baker
- Department of Biomedical Engineering , Carnegie Mellon University , Scott Hall 4N201, 5000 Forbes Avenue , Pittsburgh , Pennsylvania 15213 , United States.,Center for Polymer-Based Protein Engineering , Carnegie Mellon University , 5000 Forbes Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Bibifatima Kaupbayeva
- Center for Polymer-Based Protein Engineering , Carnegie Mellon University , 5000 Forbes Avenue , Pittsburgh , Pennsylvania 15213 , United States.,Department of Biological Sciences , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Sushil Lathwal
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Subha R Das
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Alan J Russell
- Department of Biomedical Engineering , Carnegie Mellon University , Scott Hall 4N201, 5000 Forbes Avenue , Pittsburgh , Pennsylvania 15213 , United States.,Center for Polymer-Based Protein Engineering , Carnegie Mellon University , 5000 Forbes Avenue , Pittsburgh , Pennsylvania 15213 , United States.,Department of Biological Sciences , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States.,Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States.,Department of Chemical Engineering , Carnegie Mellon University , 5000 Forbes Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Krzysztof Matyjaszewski
- Center for Polymer-Based Protein Engineering , Carnegie Mellon University , 5000 Forbes Avenue , Pittsburgh , Pennsylvania 15213 , United States.,Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States.,Department of Chemical Engineering , Carnegie Mellon University , 5000 Forbes Avenue , Pittsburgh , Pennsylvania 15213 , United States
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62
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Rational enhancement of enzyme-catalyzed enantioselective reaction by construction of recombinant enzymes based on additive strategy. Bioprocess Biosyst Eng 2019; 42:1739-1746. [PMID: 31321527 DOI: 10.1007/s00449-019-02170-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 07/08/2019] [Indexed: 01/04/2023]
Abstract
A rational enhancement of kinetic resolution process for producing (S)-N-(2-ethyl-6-methylphenyl) alanine from racemic methyl ester using lipase B from Candida antarctica (CalB) was investigated. With the benefit results that lipase CalB-catalyzed reactions can be effectively regulated using amino acids (such as histidine and lysine) as additives, CalBs modified (mCalBs) by n-histidines at the N terminal and n-lysines at the C terminal were constructed and expressed. The results show that both soluble and precipitated mCalBs can effectively catalyze the hydrolysis reaction without adding any extra additives. The enantioselective ratio (E value) of soluble and precipitated mCalBs could be improved from 12.1 to 20.3, which were higher than that (E value was only 10.2) of commercial Novozym 435 (immobilized CalB). The study indicated that the amino acid-rich molecules introduced on lipase CalB can produce positive effects on enantioselectivity of enzyme. It provides unusual ideas for reasonable regulation of enzyme-catalyzed reactions.
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63
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Inactivation Mechanism of 1-Ethyl-3-Methylimidazolium-Based Ionic Liquid on β-Glucosidase Produced by Paenibacillus sp. LLZ1 and Enhanced Activity Using a Surfactant. Appl Biochem Biotechnol 2019; 190:826-838. [DOI: 10.1007/s12010-019-03131-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Accepted: 08/25/2019] [Indexed: 01/15/2023]
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64
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Dmitrieva MV, Gerasimova EV, Terent’ev AA, Dobrovol’skii YA, Zolotukhina EV. Electrochemical Peculiarities of Mediator-Assisted Bioelectrocatalytic Oxidation of Glucose by a New Type of Bioelectrocatalyst. RUSS J ELECTROCHEM+ 2019. [DOI: 10.1134/s1023193519090064] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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65
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Gavhane RJ, Madkar KR, Kurhe DN, Dagade DH. Room Temperature Ionic Liquids from Purine and Pyrimidine Nucleobases. ChemistrySelect 2019. [DOI: 10.1002/slct.201900626] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
| | - Kavita R. Madkar
- Department of ChemistryShivaji University Kolhapur – 416004 INDIA
| | - Deepti N. Kurhe
- Department of BiochemistryShivaji University Kolhapur – 416004 INDIA
| | - Dilip H. Dagade
- Department of ChemistryShivaji University Kolhapur – 416004 INDIA
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66
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Nascimento PAM, Picheli FP, Lopes AM, Pereira JFB, Santos-Ebinuma VC. Effects of cholinium-based ionic liquids on Aspergillus niger lipase: Stabilizers or inhibitors. Biotechnol Prog 2019; 35:e2838. [PMID: 31087815 DOI: 10.1002/btpr.2838] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Revised: 04/16/2019] [Accepted: 05/08/2019] [Indexed: 12/26/2022]
Abstract
Lipases are well-known biocatalysts used in several industrial processes/applications. Thus, as with other enzymes, changes in their surrounding environment and/or their thermodynamic parameters can induce structural changes that can increase, decrease, or even inhibit their catalytic activity. The use of ionic compounds as solvents or additives is a common approach for adjusting reaction conditions and, consequently, for controlling the biocatalytic activity of enzymes. Herein, to elucidate the effects of ionic compounds on the structure of lipase, the stability and enzymatic activity of lipase from Aspergillus niger in aqueous solutions (at 0.05, 0.10, 0.50, and 1.00 M) of six cholinium-based ionic liquids (cholinium chloride [Ch]Cl; cholinium acetate ([Ch][Ac]); cholinium propanoate ([Ch][Prop]); cholinium butanoate ([Ch][But]); cholinium pentanoate ([Ch][Pent]); and cholinium hexanoate ([Ch][Hex])) were evaluated over 24 hr. The enzymatic activity of lipase was maintained or enhanced in the lower concentrations of all the [Ch]+ -ILs (below 0.1 M). [Ch][Ac] maintained the biocatalytic behavior of lipase, independent of the IL concentration and incubation time. However, above 0.1 M, [Ch][Pent] and [Ch][Hex] caused complete inhibition of the catalytic activity of the enzyme, demonstrating that the increase in the anionic alkyl chain length strongly affected the conformation of the lipase. The hydrophobicity and concentration of the [Ch]+ -ILs play an important role in the enzyme activity, and these parameters can be controlled by adjusting the anionic alkyl chain length. The inhibitory effects of [Ch][Pent] and [Ch][Hex] may be of great interest to the pharmaceutical industry to induce pharmacological inhibition of gastric and pancreatic lipases.
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Affiliation(s)
- Paloma A M Nascimento
- Department of Bioprocesses and Biotechnology, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, São Paulo, Brazil
| | - Flávio P Picheli
- Department of Bioprocesses and Biotechnology, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, São Paulo, Brazil
| | - André M Lopes
- Department of Bioprocesses and Biotechnology, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, São Paulo, Brazil
| | - Jorge F B Pereira
- Department of Bioprocesses and Biotechnology, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, São Paulo, Brazil
| | - Valéria C Santos-Ebinuma
- Department of Bioprocesses and Biotechnology, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, São Paulo, Brazil
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67
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Insights into the effect of imidazolium-based ionic liquids on chemical structure and hydrolytic activity of microbial lipase. Bioprocess Biosyst Eng 2019; 42:1235-1246. [DOI: 10.1007/s00449-019-02121-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Accepted: 04/03/2019] [Indexed: 01/04/2023]
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68
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Ionic liquids and protein folding-old tricks for new solvents. Biophys Rev 2019; 11:209-225. [PMID: 30888574 DOI: 10.1007/s12551-019-00509-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 02/15/2019] [Indexed: 01/19/2023] Open
Abstract
One important aspect of the green chemistry revolution has been the use of ionic liquids as the solvent in liquid-phase enzymatic catalysis. An essential requirement for protein enzyme function is the correct folding of the polypeptide chain into its functional "native" state. Quantitative assessment of protein structure may be carried out either empirically, or by using model-based characterization procedures, in which the parameters are defined in terms of a standard reference state. In this short note, we briefly outline the nature of the parameters associated with different empirical and model-based characterization procedures and point out factors which affect their interpretation when using a base solvent different from water. This review principally describes arguments developed by Wakayama et al., Protein Solubility and Amorphous Aggregation: From Academic Research to Applications in Drug Discovery and Bioindustry, 2019, edited by Y. Kuroda and F. Arisaka; CMC Publishing House. Sections of that work are translated from the original Japanese and republished here with the full permission of CMC Publishing Corporation.
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69
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Mokashe N, Chaudhari B, Patil U. Operative utility of salt-stable proteases of halophilic and halotolerant bacteria in the biotechnology sector. Int J Biol Macromol 2018; 117:493-522. [DOI: 10.1016/j.ijbiomac.2018.05.217] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Revised: 05/27/2018] [Accepted: 05/28/2018] [Indexed: 09/30/2022]
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70
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Xu WJ, Huang YK, Li F, Wang DD, Yin MN, Wang M, Xia ZN. Improving β-glucosidase biocatalysis with deep eutectic solvents based on choline chloride. Biochem Eng J 2018. [DOI: 10.1016/j.bej.2018.07.002] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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71
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Catalytic potency of ionic liquid-stabilized metal nanoparticles towards greening biomass processing: Insights, limitations and prospects. Biochem Eng J 2018. [DOI: 10.1016/j.bej.2018.07.018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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72
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Lim GS, Klähn M. On the Stability of Proteins Solvated in Imidazolium-Based Ionic Liquids Studied with Replica Exchange Molecular Dynamics. J Phys Chem B 2018; 122:9274-9288. [DOI: 10.1021/acs.jpcb.8b06452] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Geraldine S. Lim
- Institute of High Performance Computing, Agency for Science, Technology and Research, 1 Fusionopolis Way, #16-16, Connexis, Singapore 138632, Republic of Singapore
| | - Marco Klähn
- Institute of Chemical and Engineering Sciences, Agency for Science, Technology and Research, 1 Pesek Road, Jurong Island, Singapore 627833, Republic of Singapore
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73
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Ullah H, Wilfred CD, Shaharun MS. Ionic liquid-based extraction and separation trends of bioactive compounds from plant biomass. SEP SCI TECHNOL 2018. [DOI: 10.1080/01496395.2018.1505913] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Habib Ullah
- Fundamental and Applied Science Department, Universiti Teknologi PETRONAS, Tronoh, Perak, Malaysia
| | - Cecilia Devi Wilfred
- Fundamental and Applied Science Department, Universiti Teknologi PETRONAS, Tronoh, Perak, Malaysia
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74
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Endo A, Kurinomaru T, Shiraki K. Hyperactivation of serine proteases by the Hofmeister effect. MOLECULAR CATALYSIS 2018. [DOI: 10.1016/j.mcat.2018.05.023] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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75
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Wang Y, Zhang L, Guo X, Wu S. Salting-in counter-current chromatography separation of tanshinones based on room temperature ionic liquids. J Chromatogr A 2018; 1559:149-155. [PMID: 29305056 DOI: 10.1016/j.chroma.2017.12.062] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2017] [Revised: 12/22/2017] [Accepted: 12/22/2017] [Indexed: 12/17/2022]
Abstract
Ionic liquids have been widely used for the extraction and separation of bioactive natural and synthetic mixtures. In this study, we provided an updated example by using an ionic liquid-based salting-in counter-current chromatography (CCC) strategy for the separation of hydrophobic tanshinones without subsequent column chromatography purification. Several ionic liquids such as 1-allyl-3-methylimidazolium chloride ([AMIM]Cl), 1-methallyl-3-methylimidazolium chloride ([MAMIM]Cl) and 1-butyl-3-ethylimidazolium chloride [BMIM]Cl could significantly decrease the partition coefficients (K) of tanshinones in the selected two-phase solvent composed of hexane-ethyl acetate-methanol-ionic liquid aqueous solution (5:5:6:4, v/v). Typically, K values of three target tanshinones including tanshinone I, 1,2-dihydrotanshinquione and tanshinone IIA were reduced from 3.57, 4.57 and 5.50 to 1.62, 2.33 and 3.08, respectively, by the inclusion of 10% [AMIM]Cl in the solvent system. After salting-in CCC separation, the purified tanshinones were obtained only by simple ethyl acetate extraction. In general, the current results demonstrated that the ionic liquid-based salting-in CCC may be as an alternative strategy for the optimization of CCC solvent systems and separation of lipophilic natural products.
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Affiliation(s)
- Yanyan Wang
- Research Center of Siyuan Natural Pharmacy and Biotoxicology, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang Province, 310058, China; Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
| | - Lihong Zhang
- Research Center of Siyuan Natural Pharmacy and Biotoxicology, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang Province, 310058, China
| | - Xiuyun Guo
- Research Center of Siyuan Natural Pharmacy and Biotoxicology, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang Province, 310058, China
| | - Shihua Wu
- Research Center of Siyuan Natural Pharmacy and Biotoxicology, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang Province, 310058, China.
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76
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Janati-Fard F, Housaindokht MR, Monhemi H, Esmaeili AA, Nakhaei Pour A. The influence of two imidazolium-based ionic liquids on the structure and activity of glucose oxidase: Experimental and theoretical studies. Int J Biol Macromol 2018; 114:656-665. [DOI: 10.1016/j.ijbiomac.2018.03.083] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Revised: 02/27/2018] [Accepted: 03/17/2018] [Indexed: 01/27/2023]
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77
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Sun S, Hou X, Zhou W. Effect of ionic liquids on enzymatic preparation of lipophilic feruloylated structured lipids using distearin as feruloylated acceptor and kinetic analysis. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.03.077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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78
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D'Oronzo E, Secundo F, Minofar B, Kulik N, Pometun AA, Tishkov VI. Activation/Inactivation Role of Ionic Liquids on Formate Dehydrogenase fromPseudomonassp. 101 and Its Mutated Thermostable Form. ChemCatChem 2018. [DOI: 10.1002/cctc.201800145] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Erica D'Oronzo
- Istituto di Chimica del Riconoscimento Molecolare, CNR; Via Mario Bianco 9 20131 Milan Italy
| | - Francesco Secundo
- Istituto di Chimica del Riconoscimento Molecolare, CNR; Via Mario Bianco 9 20131 Milan Italy
| | - Babak Minofar
- Institute of Microbiology; Academy of, Sciences of the Czech Republic; Zamek 136 37333 Nove Hrady Czech Republic
- Faculty of Science; University of South Bohemia; Branišovská 1760 37005 České Budějovice Czech Republic
| | - Natallia Kulik
- Institute of Microbiology; Academy of, Sciences of the Czech Republic; Zamek 136 37333 Nove Hrady Czech Republic
| | - Anastasia A. Pometun
- Innovations and High Technologies MSU Ltd.; Tsymlyanskaya ul., 16-96 109451 Moscow Russian Federation
- A.N. Bach Institute of Biochemistry; Research Center, of Biotechnology of the Russian Academy of Sciences; bld. 2 Leninsky Ave. Moscow 119071 Russian Federation
| | - Vladimir I. Tishkov
- Innovations and High Technologies MSU Ltd.; Tsymlyanskaya ul., 16-96 109451 Moscow Russian Federation
- Chemistry Faculty; M.V. Lomonosov Moscow State University; Leninskie Gory 1-3 119991 Moscow Russian Federation
- A.N. Bach Institute of Biochemistry; Research Center, of Biotechnology of the Russian Academy of Sciences; bld. 2 Leninsky Ave. Moscow 119071 Russian Federation
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79
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Wijaya EC, Separovic F, Drummond CJ, Greaves TL. Stability and activity of lysozyme in stoichiometric and non-stoichiometric protic ionic liquid (PIL)-water systems. J Chem Phys 2018; 148:193838. [DOI: 10.1063/1.5010055] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Emmy C. Wijaya
- School of Chemistry, Bio21 Institute, The University of Melbourne, Melbourne, VIC 3010, Australia
- CSIRO Manufacturing, Clayton, VIC 3169, Australia
| | - Frances Separovic
- School of Chemistry, Bio21 Institute, The University of Melbourne, Melbourne, VIC 3010, Australia
| | - Calum J. Drummond
- School of Science, College of Science, Engineering and Health, RMIT University, VIC 3001, Australia
| | - Tamar L. Greaves
- School of Science, College of Science, Engineering and Health, RMIT University, VIC 3001, Australia
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80
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Recent developments in biocatalysis in multiphasic ionic liquid reaction systems. Biophys Rev 2018; 10:901-910. [PMID: 29704212 DOI: 10.1007/s12551-018-0423-6] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2018] [Accepted: 04/08/2018] [Indexed: 01/27/2023] Open
Abstract
Ionic liquids are well known and frequently used 'designer solvents' for biocatalytic reactions. This review highlights recent achievements in the field of multiphasic ionic liquid-based reaction concepts. It covers classical biphasic systems including supported ionic liquid phases, thermo-regulated multi-component solvent systems (TMS) and polymerized ionic liquids. These powerful concepts combine unique reaction conditions with a high potential for future applications on a laboratory and industrial scale. The presence of a multiphasic system simplifies downstream processing due to the distribution of the catalyst and reactants in different phases.
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81
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Zeindlhofer V, Schröder C. Computational solvation analysis of biomolecules in aqueous ionic liquid mixtures : From large flexible proteins to small rigid drugs. Biophys Rev 2018; 10:825-840. [PMID: 29687270 PMCID: PMC5988630 DOI: 10.1007/s12551-018-0416-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 03/26/2018] [Indexed: 01/07/2023] Open
Abstract
Based on their tunable properties, ionic liquids attracted significant interest to replace conventional, organic solvents in biomolecular applications. Following a Gartner cycle, the expectations on this new class of solvents dropped after the initial hype due to the high viscosity, hydrolysis, and toxicity problems as well as their high cost. Since not all possible combinations of cations and anions can be tested experimentally, fundamental knowledge on the interaction of the ionic liquid ions with water and with biomolecules is mandatory to optimize the solvation behavior, the biodegradability, and the costs of the ionic liquid. Here, we report on current computational approaches to characterize the impact of the ionic liquid ions on the structure and dynamics of the biomolecule and its solvation layer to explore the full potential of ionic liquids.
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Affiliation(s)
- Veronika Zeindlhofer
- Faculty of Chemistry, Department of Computational Biological Chemistry, University of Vienna, Währingerstr. 17, Vienna, Austria
| | - Christian Schröder
- Faculty of Chemistry, Department of Computational Biological Chemistry, University of Vienna, Währingerstr. 17, Vienna, Austria.
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82
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da Silva VG, de Castro RJS. Biocatalytic action of proteases in ionic liquids: Improvements on their enzymatic activity, thermal stability and kinetic parameters. Int J Biol Macromol 2018; 114:124-129. [PMID: 29567497 DOI: 10.1016/j.ijbiomac.2018.03.084] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Revised: 02/16/2018] [Accepted: 03/17/2018] [Indexed: 11/27/2022]
Abstract
This study evaluated the effect of the addition of the following ionic liquids (IL): choline chloride (CC), tetramethylammonium bromide (TB) and 1‑ethyl‑3‑methylimidazolium bromide (EM), on some biochemical properties including enzymatic activity and different kinetic parameters of commercial proteases. The enzyme-IL combinations that showed the highest increases in enzyme activities were as follows: CC (0.5mM) and Neutrase® 0.8L; CC (5mM) and Flavourzyme® 500L; TB (2000mM) and Alcalase® 2.4L, with relative increases of 20, 15 and 150% in protease activities, respectively, compared to the control assays. The combination TB and Alcalase® 2.4L showed a reduction of 50% of the activation energy (Ea), an increase of the relation Vmax/Km of 35% and a 16-fold rise in the values of t1/2, and D. Neutrase® 0.8L combined with CC showed an increase of 20% in the relation Vmax/Km. The combination Flavourzyme® 500L and CC presented a 20% higher value of the relation Vmax/Km and a 2-fold increase in the values of t1/2 and D compared to the control assay. In summary, the most positive effects observed in this study included proteases with improved activity and stability properties and a greater affinity for the substrate.
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Affiliation(s)
- Vítor Geniselli da Silva
- Department of Food Science, School of Food Engineering, University of Campinas, 80 Rua Monteiro Lobato, Campinas, SP, Brazil
| | - Ruann Janser Soares de Castro
- Department of Food Science, School of Food Engineering, University of Campinas, 80 Rua Monteiro Lobato, Campinas, SP, Brazil.
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83
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Dwivedee BP, Soni S, Sharma M, Bhaumik J, Laha JK, Banerjee UC. Promiscuity of Lipase-Catalyzed Reactions for Organic Synthesis: A Recent Update. ChemistrySelect 2018. [DOI: 10.1002/slct.201702954] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Bharat P. Dwivedee
- Department of Pharmaceutical Technology (Biotechnology); National Institute of Pharmaceutical Education and Research; S.A.S. Nagar 160062 Punjab India
| | - Surbhi Soni
- Department of Biotechnology; National Institute of Pharmaceutical Education and Research, S.A.S. Nagar; 160062 Punjab India
| | - Misha Sharma
- Department of Pharmaceutical Technology (Process Chemistry); National Institute of Pharmaceutical Education and Research; S.A.S. Nagar 160062 Punjab India
| | - Jayeeta Bhaumik
- Department of Pharmaceutical Technology (Biotechnology); National Institute of Pharmaceutical Education and Research; S.A.S. Nagar 160062 Punjab India
| | - Joydev K. Laha
- Department of Pharmaceutical Technology (Process Chemistry); National Institute of Pharmaceutical Education and Research; S.A.S. Nagar 160062 Punjab India
| | - Uttam C. Banerjee
- Department of Pharmaceutical Technology (Biotechnology); National Institute of Pharmaceutical Education and Research; S.A.S. Nagar 160062 Punjab India
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84
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Mukhopadhyay A, Das T, Datta A, Sharma KP. Neat Protein–Polymer Surfactant Bioconjugates as Universal Solvents. Biomacromolecules 2018; 19:943-950. [DOI: 10.1021/acs.biomac.7b01729] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Anasua Mukhopadhyay
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Tarasankar Das
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Anindya Datta
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Kamendra P. Sharma
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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85
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Biancalana L, Bresciani G, Chiappe C, Marchetti F, Pampaloni G, Pomelli CS. Modifying bis(triflimide) ionic liquids by dissolving early transition metal carbamates. Phys Chem Chem Phys 2018; 20:5057-5066. [PMID: 29388992 DOI: 10.1039/c7cp07289a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
The authors report the first modification of ionic liquids with metal carbamates. A selection of homoleptic N,N-dialkylcarbamates of group 4 and 5 metals, M(O2CNR2)n, were dissolved in bis(trifluoromethylsulfonyl)imide-based ionic liquids, i.e. [bmim][Tf2N] and [P(oct)4][Tf2N], at 293 K. The resulting solutions were characterized by means of IR, UV and NMR spectroscopy, and the data were compared to those of the respective metal compounds. Notably, the dissolution process did not proceed with the release of any of the original carbamato ligands, thus preserving the intact coordination frame around the metal centre. The solvation process of Ti(O2CNiPr2)4, as a model species, in [bmim][Tf2N] was rationalized by DFT calculations. As a comparative study, solutions of NbF5 and MCl5 (M = Nb, Ta) in [bmim][Tf2N] were also investigated, revealing the possible occurrence of solvent anion coordination to the metal centres.
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Affiliation(s)
- Lorenzo Biancalana
- University of Pisa, Dipartimento di Chimica e Chimica Industriale, Via G. Moruzzi 13, I-56124, Pisa, Italy.
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86
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Diddens D, Lesch V, Heuer A, Smiatek J. Aqueous ionic liquids and their influence on peptide conformations: denaturation and dehydration mechanisms. Phys Chem Chem Phys 2018; 19:20430-20440. [PMID: 28737791 DOI: 10.1039/c7cp02897k] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Low concentrated aqueous ionic liquids (ILs) and their influence on protein structures have attracted a lot of interest over the last few years. This can be mostly attributed to the fact that aqueous ILs, depending on the ion species involved, can be used as protein protectants or protein denaturants. Atomistic molecular dynamics (MD) simulations are performed in order to study the influence of different aprotic ILs on the properties of a short hairpin peptide. Our results reveal distinct binding and denaturation effects for 1-ethyl-3-methylimidazolium (EMIM) in combination with different anions, namely, chloride (CL), tetrafluoroborate (BF4) and acetate (ACE). The simulation outcomes demonstrate that the studied ILs with larger anions reveal a more pronounced accumulation behavior of the individual ion species around the peptide, which is accomplished by a stronger dehydration effect. We can relate these findings to the implications of the Kirkwood-Buff theory, which provides a thermodynamic explanation for the denaturation strength in terms of the IL accumulation behavior. The results for the spatial distribution functions, the binding energies and the local/bulk partition coefficients are in good agreement with metadynamics simulations in order to determine the energetically most stable peptide conformations. The free energy landscapes indicate a decrease of the denaturation strength in the order EMIM/ACE, EMIM/BF4 and EMIM/CL, which coincides with a decreasing size of the anion species. An analysis of the potential binding energies reveals that this effect is mainly of enthalpic nature.
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Affiliation(s)
- Diddo Diddens
- Institute of Physical Chemistry, University of Münster, Corrensstrasse 28/30, 48149 Münster, Germany
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87
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Effect of water and ionic liquids on biomolecules. Biophys Rev 2018; 10:795-808. [PMID: 29423700 DOI: 10.1007/s12551-018-0399-2] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2017] [Accepted: 01/23/2018] [Indexed: 12/23/2022] Open
Abstract
The remarkable progress in the field of ionic liquids (ILs) in the last two decades has involved investigations on different aspects of ILs in various conditions. The nontoxic and biocompatible nature of ILs makes them a suitable substance for the storage and application of biomolecules. In this regard, the aqueous IL solutions have attracted a large number of studies to comprehend the role of water in modulating various properties of biomolecules. Here, we review some of the recent studies on aqueous ILs that concern the role of water in altering the behavior of ILs in general and in case of biomolecules solvated in ILs. The different structural and dynamic effects caused by water have been highlighted. We discuss the different modes of IL interaction that are responsible for stabilization and destabilization of proteins and enzymes followed by examples of water effect on this. The role of water in the case of nucleic acid storage in ILs, an area which has mostly been underrated, also has been emphasized. Our discussions highlight the fact that the effects of water on IL behavior are not general and are highly dependent on the nature of the IL under consideration. Overall, we aim to draw attention to the significance of water dynamics in the aqueous IL solutions, a better understanding of which can help in developing superior storage materials for application purposes.
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88
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Elgharbawy AA, Riyadi FA, Alam MZ, Moniruzzaman M. Ionic liquids as a potential solvent for lipase-catalysed reactions: A review. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2017.12.050] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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89
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Fan Y, Wang X, Li J, Zhang L, Yang L, Gao P, Zhou Z. Kinetic study of the inhibition of ionic liquids on the trypsin activity. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.01.014] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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90
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Ho CL, Tan HQ, Chua KJ, Kang A, Lim KH, Ling KL, Yew WS, Lee YS, Thiery JP, Chang MW. Engineered commensal microbes for diet-mediated colorectal-cancer chemoprevention. Nat Biomed Eng 2018; 2:27-37. [PMID: 31015663 DOI: 10.1038/s41551-017-0181-y] [Citation(s) in RCA: 148] [Impact Index Per Article: 24.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2016] [Accepted: 11/27/2017] [Indexed: 01/07/2023]
Abstract
Chemoprevention-the use of medication to prevent cancer-can be augmented by the consumption of produce enriched with natural metabolites. However, chemopreventive metabolites are typically inactive and have low bioavailability and poor host absorption. Here, we show that engineered commensal microbes can prevent carcinogenesis and promote the regression of colorectal cancer through a cruciferous vegetable diet. The engineered commensal Escherichia coli bound specifically to the heparan sulphate proteoglycan on colorectal cancer cells and secreted the enzyme myrosinase to transform host-ingested glucosinolates-natural components of cruciferous vegetables-to sulphoraphane, an organic small molecule with known anticancer activity. The engineered microbes coupled with glucosinolates resulted in >95% proliferation inhibition of murine, human and colorectal adenocarcinoma cell lines in vitro. We also show that murine models of colorectal carcinoma fed with the engineered microbes and the cruciferous vegetable diet displayed significant tumour regression and reduced tumour occurrence.
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Affiliation(s)
- Chun Loong Ho
- Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.,NUS Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, Singapore, Singapore
| | - Hui Qing Tan
- Department of Gastroenterology and Hepatology, Singapore General Hospital, Singapore, Singapore
| | - Koon Jiew Chua
- Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.,NUS Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, Singapore, Singapore
| | - Aram Kang
- Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.,NUS Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, Singapore, Singapore
| | - Kiat Hon Lim
- Department of Pathology, Singapore General Hospital, Singapore, Singapore
| | - Khoon Lin Ling
- Department of Gastroenterology and Hepatology, Singapore General Hospital, Singapore, Singapore
| | - Wen Shan Yew
- Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.,NUS Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, Singapore, Singapore
| | - Yung Seng Lee
- NUS Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, Singapore, Singapore.,Department of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
| | - Jean Paul Thiery
- Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.,NUS Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, Singapore, Singapore
| | - Matthew Wook Chang
- Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore. .,NUS Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, Singapore, Singapore.
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91
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Aqueous ionic liquids influence the disulfide bond isoform equilibrium in conotoxin AuIB: a consequence of the Hofmeister effect? Biophys Rev 2018; 10:769-780. [PMID: 29294259 DOI: 10.1007/s12551-017-0391-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Accepted: 12/13/2017] [Indexed: 12/13/2022] Open
Abstract
The appearance of several disulfide bond isoforms in multiple cysteine containing venom peptides poses a significant challenge in their synthesis and purification under laboratory conditions. Recent experiments suggest that careful tuning of solvent and temperature conditions can propel the disulfide bond isoform equilibrium in favor of the most potent, native form. Certain aqueous ionic liquids (ILs) have proven significantly useful as solvents for this purpose, while exceptions have also been noted. To elucidate the molecular level origin behind such a preference, we report a detailed explicit solvent replica exchange molecular dynamics study of a conotoxin, AuIB, in pure water and four different aqueous IL solutions (~45-60% v/v). The ILs studied here are comprised of cations like 1-ethyl-3-methyl-imidazolium (Im21+) or 1-butyl-3-methyl-imidazolium (Im41+) coupled with either acetate (OAc-) or chloride (Cl-) as the counter anion. Our simulations unfold interesting features of the conformational spaces sampled by the peptide and its solvation in pure water and aqueous IL solutions. Detailed investigation into populations of the globular disulfide bond isoform of AuIB in aqueous IL solutions reveal distinct trends which might be related to the Hofmeister effect of the cation and anion of the IL and of specific interactions of the aqueous IL solutions with the peptide. In accordance with experimental observations, the aqueous [Im21][OAc] solution is found to promote the highest globular isoform population in AuIB.
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92
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Neri L, Di Mattia CD, Sacchetti G, Pittia P, Mastrocola D. The influence of water activity and molecular mobility on pectinmethylesterase activity in salt and glucose–maltodextrin model systems. FOOD AND BIOPRODUCTS PROCESSING 2018. [DOI: 10.1016/j.fbp.2017.10.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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93
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Zhao J, Frauenkron-Machedjou VJ, Fulton A, Zhu L, Davari MD, Jaeger KE, Schwaneberg U, Bocola M. Unraveling the effects of amino acid substitutions enhancing lipase resistance to an ionic liquid: a molecular dynamics study. Phys Chem Chem Phys 2018; 20:9600-9609. [DOI: 10.1039/c7cp08470f] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The key properties affecting lipase resistance towards an ionic liquid are uncovered through a molecular dynamics study.
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Affiliation(s)
- Jing Zhao
- Lehrstuhl für Biotechnologie
- RWTH Aachen University
- 52074 Aachen
- Germany
- Tianjin Institute of Industrial Biotechnology
| | | | - Alexander Fulton
- Institute of Molecular Enzyme Technology
- Heinrich-Heine-University Düsseldorf
- Forschungszentrum Jülich
- 52426 Jülich
- Germany
| | - Leilei Zhu
- Lehrstuhl für Biotechnologie
- RWTH Aachen University
- 52074 Aachen
- Germany
- Tianjin Institute of Industrial Biotechnology
| | - Mehdi D. Davari
- Lehrstuhl für Biotechnologie
- RWTH Aachen University
- 52074 Aachen
- Germany
| | - Karl-Erich Jaeger
- Institute of Molecular Enzyme Technology
- Heinrich-Heine-University Düsseldorf
- Forschungszentrum Jülich
- 52426 Jülich
- Germany
| | - Ulrich Schwaneberg
- Lehrstuhl für Biotechnologie
- RWTH Aachen University
- 52074 Aachen
- Germany
- DWI-Leibniz Institute for Interactive Materials
| | - Marco Bocola
- Lehrstuhl für Biotechnologie
- RWTH Aachen University
- 52074 Aachen
- Germany
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94
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Reilly JT, Coats MA, Reardon MM, Mirjafari A. Study of biocatalytic activity of histidine ammonia lyase in protic ionic liquids. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.10.079] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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95
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Fedotova MV, Kruchinin SE, Chuev GN. Local ion hydration structure in aqueous imidazolium-based ionic liquids: The effects of concentration and anion nature. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.09.087] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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96
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Summers SR, Sprenger KG, Pfaendtner J, Marchant J, Summers MF, Kaar JL. Mechanism of Competitive Inhibition and Destabilization of Acidothermus cellulolyticus Endoglucanase 1 by Ionic Liquids. J Phys Chem B 2017; 121:10793-10803. [DOI: 10.1021/acs.jpcb.7b08435] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Samantha R. Summers
- Department of Chemical
and Biological Engineering, University of Colorado, Boulder, Colorado 80309, United States
| | - K. G. Sprenger
- Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, United States
| | - Jim Pfaendtner
- Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, United States
| | - Jan Marchant
- Howard Hughes Medical Institute and Department
of Chemistry, University of Maryland Baltimore County, Baltimore, Maryland 21250, United States
| | - Michael F. Summers
- Howard Hughes Medical Institute and Department
of Chemistry, University of Maryland Baltimore County, Baltimore, Maryland 21250, United States
| | - Joel L. Kaar
- Department of Chemical
and Biological Engineering, University of Colorado, Boulder, Colorado 80309, United States
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97
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Kołodziejska R, Studzińska R, Pawluk H. Lipase-catalyzed enantioselective transesterification of prochiral 1-((1,3-dihydroxypropan-2-yloxy)methyl)-5,6,7,8-tetrahydroquinazoline-2,4(1H,3H)-dione in ionic liquids. Chirality 2017; 30:206-214. [PMID: 29139569 DOI: 10.1002/chir.22787] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Revised: 10/05/2017] [Accepted: 10/06/2017] [Indexed: 11/10/2022]
Abstract
The application of ionic liquids as solvents for transesterification of prochiral pirymidine acyclonucleoside using lipase (EC 3.1.1.3) Amano PS from Burkholderia cepacia (BCL) is reported. The effect of using medium reaction, acyl group donor, and temperature on the activity and enantioselectivity of BCL was studied. From the investigated ionic solvents, the hydrophobic ionic liquid [BMIM]PF6 ] was the preferred medium for enzymatic reactions. However, the best result was obtained in the mixture [BMIM][PF6 ]:TBME (1:1 v/v) at 50°C. Enzyme activity and selectivity in [BMIM][PF6 ]:TBME (1:1 v/v) was slightly higher in than in conventional organic solvents (for example, TBME), and in this condition, good activity and enantioselectivity were associated with unique properties of ionic liquid such as hydrophobicity and high polarity. Independently of solvents, monester of (R)-configuration was obtained in excess. Under optimal conditions, desymmetrization of the prochiral compound using different acyl donors was performed. If vinyl butyrate was used as the acylating agent, BCL completely selectively acylated enantiotopic hydroxyl groups.
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Affiliation(s)
- Renata Kołodziejska
- Department of Biochemistry, Faculty of Medicine, Nicolaus Copernicus University in Toruń, Collegium Medicum in Bydgoszcz, Bydgoszcz, Poland
| | - Renata Studzińska
- Department of Organic Chemistry, Faculty of Pharmacy, Nicolaus Copernicus University in Toruń, Collegium Medicum in Bydgoszcz, Bydgoszcz, Poland
| | - Hanna Pawluk
- Department of Biochemistry, Faculty of Medicine, Nicolaus Copernicus University in Toruń, Collegium Medicum in Bydgoszcz, Bydgoszcz, Poland
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98
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Gehlot P, Kulshrestha A, Bharmoria P, Damarla K, Chokshi K, Kumar A. Surface-Active Ionic Liquid Cholinium Dodecylbenzenesulfonate: Self-Assembling Behavior and Interaction with Cellulase. ACS OMEGA 2017; 2:7451-7460. [PMID: 31457311 PMCID: PMC6644741 DOI: 10.1021/acsomega.7b01291] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2017] [Accepted: 10/17/2017] [Indexed: 06/10/2023]
Abstract
The conventional sodium dodecylbenzenesulfonate (NaDBS) has been converted into an efficient and nontoxic anionic surface-active ionic liquid, cholinium dodecylbenzenesulfonate (Cho[DBS]). We have investigated its self-assembling behavior, interaction with the enzyme cellulase, and ecotoxicity. The surface-active properties at the air-liquid interface and the aggregation behavior of Cho[DBS] in water have been determined using tensiometry, isothermal titration calorimetry (ITC), conductometry, and dynamic light scattering (DLS). The enzyme activity was observed using dinitro salicylic acid analysis. The enhanced enzyme activity was explained through active-site exfoliation and structural constancy of cellulase in the micellar medium using the results from fluorescence, circular dichroism, DLS, and ITC. The nontoxic nature was confirmed by toxicity analysis on the freshwater microalgae Scenedesmus sp.
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Affiliation(s)
- Praveen
Singh Gehlot
- Academy
of Scientific and Innovative Research (AcSIR), Salt and Marine
Chemicals Discipline, and Salt and Marine Chemicals Discipline, Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar 364002, Gujarat, India
| | - Akshay Kulshrestha
- Academy
of Scientific and Innovative Research (AcSIR), Salt and Marine
Chemicals Discipline, and Salt and Marine Chemicals Discipline, Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar 364002, Gujarat, India
| | - Pankaj Bharmoria
- Academy
of Scientific and Innovative Research (AcSIR), Salt and Marine
Chemicals Discipline, and Salt and Marine Chemicals Discipline, Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar 364002, Gujarat, India
| | - Krishnaiah Damarla
- Academy
of Scientific and Innovative Research (AcSIR), Salt and Marine
Chemicals Discipline, and Salt and Marine Chemicals Discipline, Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar 364002, Gujarat, India
| | - Kaumeel Chokshi
- Academy
of Scientific and Innovative Research (AcSIR), Salt and Marine
Chemicals Discipline, and Salt and Marine Chemicals Discipline, Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar 364002, Gujarat, India
| | - Arvind Kumar
- Academy
of Scientific and Innovative Research (AcSIR), Salt and Marine
Chemicals Discipline, and Salt and Marine Chemicals Discipline, Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar 364002, Gujarat, India
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99
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Bisht M, Mondal D, Pereira MM, Freire MG, Venkatesu P, Coutinho JAP. Long-term protein packaging in bio-ionic liquids: Improved catalytic activity and enhanced stability of cytochrome C against multiple stresses. GREEN CHEMISTRY : AN INTERNATIONAL JOURNAL AND GREEN CHEMISTRY RESOURCE : GC 2017; 19:4900-4911. [PMID: 30271272 PMCID: PMC6157724 DOI: 10.1039/c7gc02011b] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
There is a considerable interest in the use of structurally stable and catalytically active enzymes, such as cytochrome C (Cyt C), in the pharmaceutical and fine chemical industries. However, harsh process conditions, such as temperature, pH, and presence of organic solvents, are the major barriers to the effective use of enzymes in biocatalysis. Herein, we demonstrate the suitability of bio-based ionic liquids (ILs) formed by the cholinium cation and dicarboxylate-based anions as potential media for enzymes, in which remarkable enhanced activity and improved stability of Cyt C against multiple stresses were obtained. Among the several bio-ILs studied, an exceptionally high catalytic activity (> 50-fold) of Cyt C was observed in aqueous solutions of cholinium glutarate ([Ch][Glu]; 1g/mL) as compared to the commonly used phosphate buffer solutions (pH 7.2), and > 25-fold as compared to aqueous solutions of cholinium dihydrogen phosphate ([Ch][Dhp]; 0.5g/mL) -the best known IL for long term stability of Cyt C. The catalytic activity of the enzyme in presence of bio-ILs was retained against several external stimulus, such as chemical denaturants (H2O2 and GuHCl), and temperatures up to 120 °C. The observed enzyme activity is in agreement with its structural stability, as confirmed by UV-Vis, circular dichroism (CD), and Fourier transform infrared (FT-IR) spectroscopies. Taking advantage of the multi-ionization states of di/tri-carboxylic acids, the pH was switched from acidic to basic by the addition of the corresponding carboxylic acid and choline hydroxide, respectively. The activity was found to be maximum at a 1:1 ratio of [Ch][carboxylate], with a pH in the range from 3 to 5.5. Moreover, it was found that the bio-ILs studied herein protect the enzyme against protease digestion and allow long-term storage (at least for 21 weeks) at room temperature. An attempt by molecular docking was also made to better understand the efficacy of the investigated bio-ILs towards the enhanced activity and long term stability of Cyt C. The results showed that dicarboxylates anions interact with the active site's amino acids of the enzyme through H-bonding and electrostatic interactions, which are responsible for the observed enhancement of the catalytic activity. Finally, it is demonstrated that Cyt C can be successfully recovered from the aqueous solution of bio-ILs and reused without compromising its yield, structural integrity and catalytic activity, thereby overcoming the major limitations in the use of IL-protein systems in biocatalysis.
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Affiliation(s)
- Meena Bisht
- Department of Chemistry, University of Delhi, Delhi – 110 007, India
- Departamento de Química, CICECO, Universidade de Aveiro, 3810-193, Aveiro, Portugal
| | - Dibyendu Mondal
- Departamento de Química, CICECO, Universidade de Aveiro, 3810-193, Aveiro, Portugal
| | - Matheus M. Pereira
- Departamento de Química, CICECO, Universidade de Aveiro, 3810-193, Aveiro, Portugal
| | - Mara G. Freire
- Departamento de Química, CICECO, Universidade de Aveiro, 3810-193, Aveiro, Portugal
| | - P. Venkatesu
- Department of Chemistry, University of Delhi, Delhi – 110 007, India
| | - J. A. P. Coutinho
- Departamento de Química, CICECO, Universidade de Aveiro, 3810-193, Aveiro, Portugal
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100
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Heitz MP, Rupp JW. Determining mushroom tyrosinase inhibition by imidazolium ionic liquids: A spectroscopic and molecular docking study. Int J Biol Macromol 2017; 107:1971-1981. [PMID: 29032215 DOI: 10.1016/j.ijbiomac.2017.10.066] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2017] [Revised: 09/30/2017] [Accepted: 10/11/2017] [Indexed: 01/12/2023]
Abstract
The inhibition effects of imidazolium ionic liquids (ILs) on the enzyme kinetics of mushroom tyrosinase is reported. A simple UV-VIS spectrophotometric assay was used to measure the reaction kinetics of the reaction between mushroom tyrosinase and L-dopa. Seven different imidazolium ILs, comprised of 1-alkyl-3-methylimidazolium ([Imn1+], n=2, 4, 6) cations paired with several anions that included Cl-, [NO3-], methanesulfonate ([MeSO3-]), trifluoromethanesulfonate (or triflate, [TFMS-]), and bis(trifluoromethylsulfonyl)imide ([Tf2N-]). Lineweaver-Burk plots were generated from the recovered kcat and Km parameters using four to six substrate concentrations per measurement. The results show that mushroom tyrosinase activity was consistently inhibited by all of the ILs and that the type of inhibition was non-competitive in nearly all cases. Only the data for [Im21+][Tf2N-] suggested that the inhibition mechanism was competitive with the substrate. Molecular docking simulations were performed using AutoDock4.2 and AutoDock Vina and revealed that all cations docked in the L-dopa active site. Anions showed varied results that included locations both within and outside of the active site.
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Affiliation(s)
- Mark P Heitz
- Department of Chemistry and Biochemistry, The College at Brockport, SUNY, 228, Smith Hall 350 New Campus Drive, Brockport, NY, 14420, United States.
| | - Jason W Rupp
- Department of Chemistry and Biochemistry, The College at Brockport, SUNY, 228, Smith Hall 350 New Campus Drive, Brockport, NY, 14420, United States
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