Analysis of supramolecular architectures: beyond molecular packing diagrams

Invariom approach as a new tool in electron density studies of ionic liquids: a model case of 1-butyl-2,3-dimethylimidazolium chloride BDMIM[Cl]

In this comparative study of an ionic liquid (IL), BDMIM[Cl], the invariom approximation emerges as a useful tool in search for ‘structure–property’ relations in ILs, as entangling complex interplay of interionic interactions that operate in them.

Ridges and valleys on charged 1T-MoS2 sheets guiding the packing of organic cations

The three-dimensional atomic structure of MoS₂–organic layered systems is obtained for the first time, providing insight into the surface chemistry of charged MoS₂ sheets.

Tuning of the double-well potential of short strong hydrogen bonds by ionic interactions in alkali metal hydrodicarboxylates

The influence of the cation nature on the peculiarities of short strong H-bonds within hydrocarboxylate crystals is revealed.

Extremely long Cu···O contact as a possible pathway for magnetic interactions in Na2Cu(CO3)2

Chemical binding in a mixed copper sodium carbonate Na2Cu(CO3)2, a layered material showing ferromagnetic intralayer exchange and weak antiferromagnetic interlayer coupling, was examined within the topological analysis of experimental (from high-resolution X-ray diffraction) and theoretical (from periodic quantum chemical calculations) electron density functions in its crystal. Together with modeling of a superexchange pathway within the LSDA and DFT+U approach, the results obtained reveal a very weak Cu···O interaction (0.5 kcal/mol worth) between the copper-carbonate layers that is nevertheless stabilizing (bonding) and may serve as a possible pathway for antiferromagnetic interactions.

Co-crystallization of pyridine-2-carboxamide with a series of alkyl dicarboxylic acids with different carbon chain: crystal structure, spectroscopy and Hirshfeld analysis

Three new co-crystals: pyridine-2-carboxamide-succinic acid (1), pyridine-2-carboxamide-glutaric acid (2) and pyridine-2-carboxamide-adipic acid (3) have been synthesized and characterized by single-crystal X-ray diffraction, TGA/DSC measurements, solid-state vibrational spectroscopy (IR and Raman) in this work. The investigation revealed that the carbon chain length of these alkyl acids changed the connecting motif of co-crystals 1-3 from trimer to 1D chain, and the formation of hydrogen bond interaction of pyridine-2-carboxamide with these alkyl acids lead to red shift of stretching vibration of NH2 and OH groups in IR and Raman spectra. We also studied Hirshfeld surface and UV properties of co-crystals 1-3, and we found that the carbon chain length lead to decrease of close intermolecular interactions, and the formation of hydrogen bond interaction lead to red shift of UV spectra.

Energy Analysis of Competing Non-Covalent Interaction in 1:1 and 1:2 Adducts of Collidine with Benzoic Acids by Means of X-Ray Diffraction

The hydrogen bond pattern and the types of non-covalent interactions in the crystals of the 1:1 and 1:2 adducts of 2,4,6-trimethylpyridine and benzoic acids are studied using high-resolution X-ray diffraction. The geometries of the hydrogen bonds are estimated using a combined XRD/DFT approach that provides the geometrical parameters within the margin of error of neutron diffraction studies. The energies of the non-covalent interactions are estimated on the base of the experimental electron density distribution function. It is shown that the structures of the adducts are governed by the NOH and OHO hydrogen bonds. In turn, C-H...O contacts and stacking interactions define the packing of the adducts in the crystal. On the other hand, it is important to note that the latter interactions affect the competition of the former hydrogen bonds in some 1:2 adducts.

Probing stereoelectronic interactions in an O-N-O unit by the atomic energies: experimental and theoretical electron density study

Stereoelectronic interaction lp(O1) → σ*(N1-O2) in a O-N-O unit was analyzed by means of R. Bader's Atoms in Molecule theory on the basis of X-ray diffraction data for dimethyl-(2R,4aR,5S,7R)-2,5,7-triphenylhexahydro-4H-[1,2]oxazino[2,3-b][1,2]oxazine-4,4-dicarboxylate. Atomic energies obtained by applying this approach to both the experimental and theoretical electron densities were used to probe the energy of this strong stereoelectronic interaction, giving consistent results with the NBO analysis, although showing its destabilizing character.

Intermolecular hydrogen bond energies in crystals evaluated using electron density properties: DFT computations with periodic boundary conditions

The hydrogen bond (H-bond) energies are evaluated for 18 molecular crystals with 28 moderate and strong O-H···O bonds using the approaches based on the electron density properties, which are derived from the B3LYP/6-311G** calculations with periodic boundary conditions. The approaches considered explore linear relationships between the local electronic kinetic G(b) and potential V(b) densities at the H···O bond critical point and the H-bond energy E(HB). Comparison of the computed E(HB) values with the experimental data and enthalpies evaluated using the empirical correlation of spectral and thermodynamic parameters (Iogansen, Spectrochim. Acta Part A 1999, 55, 1585) enables to estimate the accuracy and applicability limits of the approaches used. The V(b)-E(HB) approach overestimates the energy of moderate H-bonds (E(HB) < 60 kJ/mol) by ~20% and gives unreliably high energies for crystals with strong H-bonds. On the other hand, the G(b)-E(HB) approach affords reliable results for the crystals under consideration. The linear relationship between G(b) and E(HB) is basis set superposition error (BSSE) free and allows to estimate the H-bond energy without computing it by means of the supramolecular approach. Therefore, for the evaluation of H-bond energies in molecular crystals, the G(b) value can be recommended to be obtained from both density functional theory (DFT) computations with periodic boundary conditions and precise X-ray diffraction experiments.