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Jeong Y, Schäffer A, Smith K. Equilibrium partitioning of organic compounds to OASIS HLB ® as a function of compound concentration, pH, temperature and salinity. CHEMOSPHERE 2017; 174:297-305. [PMID: 28183055 DOI: 10.1016/j.chemosphere.2017.01.116] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Revised: 01/20/2017] [Accepted: 01/23/2017] [Indexed: 06/06/2023]
Abstract
Oasis hydrophilic lipophilic balance® (Oasis HLB) is commonly employed in solid phase extraction (SPE) of environmental contaminants and within polar organic chemical integrative passive samplers (POCIS). In this study batch experiments were carried out to evaluate the relative affinity of a range of relevant organic pollutants to Oasis HLB in aqueous systems. The influence of sorbate concentration, temperature, pH, and salinity on the equilibrium sorption was investigated. Equilibrium partition ratios (KD) of 28 compounds were determined, ranging over three orders of magnitude from 1.16 × 103 L/kg (atenolol) to 1.07 × 106 L/kg (isoproturon). The Freundlich model was able to describe the equilibrium partitioning to Oasis HLB, and an analysis of the thermodynamic parameters revealed the spontaneous and exothermic nature of the partitioning process. Ionic strength had only a minor effect on the partitioning, whereas pH had a considerable effect but only for ionizable compounds. The results show that apolar interactions between the Oasis HLB and analyte mainly determine the equilibrium partitioning. These research findings can be used to optimize the application of SPE and POCIS for analyses of environmental contaminants even in complex mixtures.
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Affiliation(s)
- Yoonah Jeong
- Environmental Safety Group, KIST Europe, Korea Institute of Science and Technology, Campus E7.1, 66123, Saarbrücken, Germany; RWTH Aachen University, Worringerweg 1, 52076, Aachen, Germany.
| | | | - Kilian Smith
- Environmental Safety Group, KIST Europe, Korea Institute of Science and Technology, Campus E7.1, 66123, Saarbrücken, Germany
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Yang QJ, Kluger M, Goryński K, Pawliszyn J, Bojko B, Yu AM, Noh K, Selzner M, Jerath A, McCluskey S, Pang KS, Wąsowicz M. Comparing early liver graft function from heart beating and living-donors: A pilot study aiming to identify new biomarkers of liver injury. Biopharm Drug Dispos 2017; 38:326-339. [DOI: 10.1002/bdd.2066] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2016] [Revised: 11/28/2016] [Accepted: 01/16/2017] [Indexed: 12/13/2022]
Affiliation(s)
- Qi Joy Yang
- Leslie Dan Faculty of Pharmacy; University of Toronto; Canada
| | - Michael Kluger
- Department of Anesthesia and Pain Management, Toronto General Hospital; University Health Network; Toronto Ontario Canada
| | - Krzysztof Goryński
- Department of Chemistry; University of Waterloo; Canada
- Department of Pharmacodynamics and Molecular Pharmacology, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz; Nicolaus Copernicus University in Toruń; Poland
| | | | - Barbara Bojko
- Department of Chemistry; University of Waterloo; Canada
- Department of Pharmacodynamics and Molecular Pharmacology, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz; Nicolaus Copernicus University in Toruń; Poland
| | - Ai-Ming Yu
- Departments of Biochemistry and Molecular Medicine; Comprehensive Cancer Center; UC Davis; Davis CA 95817 USA
| | - Keumhan Noh
- Leslie Dan Faculty of Pharmacy; University of Toronto; Canada
| | - Markus Selzner
- Department of Surgery, Toronto General Hospital; University Health Network; Toronto ON M5G 2N2 Canada
| | - Angela Jerath
- Department of Anesthesia and Pain Management, Toronto General Hospital; University Health Network; Toronto Ontario Canada
- Department of Anesthesia, Faculty of Medicine; University of Toronto; Toronto ON M5G 1E2 Canada
| | - Stuart McCluskey
- Department of Anesthesia and Pain Management, Toronto General Hospital; University Health Network; Toronto Ontario Canada
- Department of Anesthesia, Faculty of Medicine; University of Toronto; Toronto ON M5G 1E2 Canada
| | - K. Sandy Pang
- Leslie Dan Faculty of Pharmacy; University of Toronto; Canada
| | - Marcin Wąsowicz
- Department of Anesthesia and Pain Management, Toronto General Hospital; University Health Network; Toronto Ontario Canada
- Department of Anesthesia, Faculty of Medicine; University of Toronto; Toronto ON M5G 1E2 Canada
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Abstract
AIM In metabolomics research, the use of different blood collection methods may influence endogenous metabolites. MATERIALS & METHODS Ultra HPLC coupled with MS/MS was applied together with multivariate statistics to investigate metabolomics differences in serum and plasma samples handled by different anticoagulants. A total of 135 known representative metabolites were assessed for comprehensive evaluation of the effects of anticoagulants. RESULTS Exogenous factors, including separation gel ingredients from the serum collection tubes and the anticoagulants, affected mass spectrometer detection. Heparin plasma yielded the best detection of different functional groups and is therefore the optimal blood specimen for metabolomics research, followed by potassium oxalate plasma.
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Sitnikov DG, Monnin CS, Vuckovic D. Systematic Assessment of Seven Solvent and Solid-Phase Extraction Methods for Metabolomics Analysis of Human Plasma by LC-MS. Sci Rep 2016; 6:38885. [PMID: 28000704 PMCID: PMC5175266 DOI: 10.1038/srep38885] [Citation(s) in RCA: 65] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Accepted: 11/10/2016] [Indexed: 12/28/2022] Open
Abstract
The comparison of extraction methods for global metabolomics is usually executed in biofluids only and focuses on metabolite coverage and method repeatability. This limits our detailed understanding of extraction parameters such as recovery and matrix effects and prevents side-by-side comparison of different sample preparation strategies. To address this gap in knowledge, seven solvent-based and solid-phase extraction methods were systematically evaluated using standard analytes spiked into both buffer and human plasma. We compared recovery, coverage, repeatability, matrix effects, selectivity and orthogonality of all methods tested for non-lipid metabolome in combination with reversed-phased and mixed-mode liquid chromatography mass spectrometry analysis (LC-MS). Our results confirmed wide selectivity and excellent precision of solvent precipitations, but revealed their high susceptibility to matrix effects. The use of all seven methods showed high overlap and redundancy which resulted in metabolite coverage increases of 34-80% depending on LC-MS method employed as compared to the best single extraction protocol (methanol/ethanol precipitation) despite 7x increase in MS analysis time and sample consumption. The most orthogonal methods to methanol-based precipitation were ion-exchange solid-phase extraction and liquid-liquid extraction using methyl-tertbutyl ether. Our results help facilitate rational design and selection of sample preparation methods and internal standards for global metabolomics.
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Affiliation(s)
- Dmitri G. Sitnikov
- Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke St. W., Montréal, Québec, H4B 1R6, Canada
- PERFORM Centre, Concordia University, 7141 Sherbrooke St. W., Montréal, Québec, H4B 1R6, Canada
| | - Cian S. Monnin
- Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke St. W., Montréal, Québec, H4B 1R6, Canada
| | - Dajana Vuckovic
- Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke St. W., Montréal, Québec, H4B 1R6, Canada
- PERFORM Centre, Concordia University, 7141 Sherbrooke St. W., Montréal, Québec, H4B 1R6, Canada
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55
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Goryński K, Goryńska P, Górska A, Harężlak T, Jaroch A, Jaroch K, Lendor S, Skobowiat C, Bojko B. SPME as a promising tool in translational medicine and drug discovery: From bench to bedside. J Pharm Biomed Anal 2016; 130:55-67. [DOI: 10.1016/j.jpba.2016.05.012] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2016] [Revised: 05/03/2016] [Accepted: 05/04/2016] [Indexed: 01/11/2023]
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56
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Qiu J, Chen G, Zhu F, Ouyang G. Sulfonated nanoparticles doped electrospun fibers with bioinspired polynorepinephrine sheath for in vivo solid-phase microextraction of pharmaceuticals in fish and vegetable. J Chromatogr A 2016; 1455:20-27. [DOI: 10.1016/j.chroma.2016.05.082] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2015] [Revised: 03/10/2016] [Accepted: 05/24/2016] [Indexed: 02/05/2023]
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57
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Methods used to increase the comprehensive coverage of urinary and plasma metabolomes by MS. Bioanalysis 2016; 8:981-97. [DOI: 10.4155/bio-2015-0010] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Metabolomics, focusing on comprehensive analysis of all the metabolites in a biological system, provides a direct signature of biochemical activity. Using emerging technologies in MS, it is possible to simultaneously and rapidly analyze thousands of metabolites. However, due to the chemical and physical diversity of metabolites, it is difficult to acquire a comprehensive and reliable profiling of the whole metabolome. Here, we summarize the state of the art in metabolomics research, focusing on efforts to provide a more comprehensive metabolome coverage via improvements in two fundamental processes: sample preparation and MS analysis. Additionally, the reliable analysis is also highlighted via the combinations of multiple methods (e.g., targeted and untargeted approaches), and analytical quality control and calibration methods.
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58
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Peltenburg H, Timmer N, Bosman IJ, Hermens JL, Droge ST. Sorption of structurally different ionized pharmaceutical and illicit drugs to a mixed-mode coated microsampler. J Chromatogr A 2016; 1447:1-8. [DOI: 10.1016/j.chroma.2016.04.017] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Revised: 04/05/2016] [Accepted: 04/07/2016] [Indexed: 12/11/2022]
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59
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The evolution of analytical chemistry methods in foodomics. J Chromatogr A 2016; 1428:3-15. [DOI: 10.1016/j.chroma.2015.09.007] [Citation(s) in RCA: 82] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2015] [Revised: 07/26/2015] [Accepted: 09/02/2015] [Indexed: 12/18/2022]
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60
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Chen G, Qiu J, Xu J, Fang X, Liu Y, Liu S, Wei S, Jiang R, Luan T, Zeng F, Zhu F, Ouyang G. A novel probe based on phenylboronic acid functionalized carbon nanotubes for ultrasensitive carbohydrate determination in biofluids and semi-solid biotissues. Chem Sci 2015; 7:1487-1495. [PMID: 29910906 PMCID: PMC5975936 DOI: 10.1039/c5sc03992d] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Accepted: 11/19/2015] [Indexed: 12/26/2022] Open
Abstract
An ultrasensitive SPME probe based on phenylboronic acid functionalized CNTs is applied for direct in vitro or in vivo recognition of carbohydrates in biofluids as well as semi-solid biotissues.
Carbohydrates are known to be involved in a wide range of biological and pathological processes. However, due to the presence of multiple hydroxyl groups, carbohydrate recognition is a particular challenge. Herein, we reported an ultrasensitive solid-phase microextraction (SPME) probe based on phenylboronic acid (PBA) functionalized carbon nanotubes (CNTs) for direct in vitro or in vivo recognition of carbohydrates in biofluids as well as semi-solid biotissues. The coating of the proposed probe possessed a 3D interconnected porous architecture formed by the stacking of CNTs. As a result, the binding capacity toward carbohydrates was excellent. The proposed approach was demonstrated to be much superior to most carbohydrate sensors, including higher sensitivity, wider linear range, and excellent qualitative ability in multi-carbohydrate systems. Thus, this approach opens up new avenues for the facile and efficient recognition of carbohydrates for important applications such as glycomics.
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Affiliation(s)
- Guosheng Chen
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Junlang Qiu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Jianqiao Xu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Xu'an Fang
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Yan Liu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Shuqin Liu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Songbo Wei
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Ruifen Jiang
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Tiangang Luan
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Feng Zeng
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Fang Zhu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Gangfeng Ouyang
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
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61
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Recent advances in the application of hydrophilic interaction chromatography for the analysis of biological matrices. Bioanalysis 2015; 7:2927-45. [DOI: 10.4155/bio.15.200] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
Hydrophilic interaction chromatography (HILIC) is being increasingly used for the analysis of hydrophilic compounds in biological matrices. The complexity of biological samples demands adequate sample preparation procedures, specifically adjusted for HILIC analyses. Currently, most bioanalytical assays are performed on bare silica and ZIC-HILIC columns. Trends in HILIC for bioanalysis include smaller particle sizes and miniaturization of the analytical column. For complex biological samples, multidimensional techniques can separate and identify more compounds than 1D separations. The high volatility of the mobile phase, the added separation power and high sensitivity make MS the detection method of choice for bioanalysis using HILIC, although other detectors such as evaporative light scattering detection, charged aerosol detection and nuclear magnetic resonance have been reported.
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62
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Liu S, Chen D, Zheng J, Zeng L, Jiang J, Jiang R, Zhu F, Shen Y, Wu D, Ouyang G. The sensitive and selective adsorption of aromatic compounds with highly crosslinked polymer nanoparticles. NANOSCALE 2015; 7:16943-16951. [PMID: 26416568 DOI: 10.1039/c5nr04624f] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
This study presents the preparation and characterization of a nanoscale Davankov-type hyper-crosslinked-polymer (HCP) as an adsorbent of benzene-ring-containing dyes and organic pollutants. HCP nanoparticles post-crosslinked from a poly(DVB-co-VBC) precursor were synthesized in this study, possessing ultrahigh surface area, hydrophobicity and stability. The as-synthesized Davankov-type HCP exhibited a rapid and selective adsorption ability towards the benzene-ring-containing dyes due to its highly conjugated structure. Besides, for the first time, the prepared HCP nanoparticles were adopted for the adsorption of nonpolar organic pollutants by means of solid-phase microextraction (SPME). Owing to its high hydrophobicity, diverse pore size distribution and highly conjugated structure, a 10 μm HCP coating exhibited excellent adsorption abilities towards benzene-ring-containing polycyclic aromatic hydrocarbons (PAHs) and benzene series compounds (benzene, toluene, ethylbenzene and o-xylene; abbreviated to BTEX) and to highly hydrophobic long-chain n-alkanes. Finally, the HCP-nanoparticles-coated SPME fiber was applied to the simultaneous analysis of five PAHs in environmental water samples and satisfactory recoveries were achieved. The findings could provide a new benchmark for the exploitation of superb HCPs as effective adsorbents for SPME or other adsorption applications.
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Affiliation(s)
- Shuqin Liu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-sen University, Guangzhou 510275, P. R. China.
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63
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Souza-Silva ÉA, Reyes-Garcés N, Gómez-Ríos GA, Boyacı E, Bojko B, Pawliszyn J. A critical review of the state of the art of solid-phase microextraction of complex matrices III. Bioanalytical and clinical applications. Trends Analyt Chem 2015. [DOI: 10.1016/j.trac.2015.04.017] [Citation(s) in RCA: 180] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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64
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Szultka-Mlynska M, Olszowy P, Buszewski B. Nanoporous Conducting Polymer–Based Coatings in Microextraction Techniques for Environmental and Biomedical Applications. Crit Rev Anal Chem 2015; 46:236-47. [DOI: 10.1080/10408347.2015.1081051] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Malgorzata Szultka-Mlynska
- Department of Environmental Chemistry and Bioanalytics, Nicolaus Copernicus University, Toruń, Poland
- Interdisciplinary Centre for Modern Technologies, Nicolaus Copernicus University, Toruń, Poland
| | - Pawel Olszowy
- Department of Environmental Chemistry and Bioanalytics, Nicolaus Copernicus University, Toruń, Poland
- Interdisciplinary Centre for Modern Technologies, Nicolaus Copernicus University, Toruń, Poland
| | - Bogusław Buszewski
- Department of Environmental Chemistry and Bioanalytics, Nicolaus Copernicus University, Toruń, Poland
- Interdisciplinary Centre for Modern Technologies, Nicolaus Copernicus University, Toruń, Poland
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65
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Mousavi F, Bojko B, Pawliszyn J. Development of high throughput 96-blade solid phase microextraction-liquid chromatrography-mass spectrometry protocol for metabolomics. Anal Chim Acta 2015; 892:95-104. [PMID: 26388479 DOI: 10.1016/j.aca.2015.08.016] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2015] [Revised: 07/28/2015] [Accepted: 08/08/2015] [Indexed: 12/15/2022]
Abstract
In metabolomics, the workflow for quantitative and comprehensive metabolic mapping of cellular metabolites can be a very challenging undertaking. Sampling and sample preparation play a significant role in untargeted analysis, as they may affect the composition of the analyzed metabolome. In the current work, different solid phase microextraction (SPME) coating chemistries were developed and applied to provide simultaneous extraction of a wide range of both hydrophobic and hydrophilic cellular metabolites produced by a model organism, Escherichia coli. Three different LC-MS methods were also evaluated for analysis of extracted metabolites. Finally, over 200 cellular metabolites were separated and detected with widely varying hydrophobicities ranging within -7 < log P < 15, including amino acids, peptides, nucleotides, carbohydrates, polycarboxylic acids, vitamins, phosphorylated compounds, and lipids such as hydrophobic phospholipids, prenol lipids, and fatty acids at the stationary phase of the E. coli life cycle using the developed 96-blade SPME-LC-MS method.
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Affiliation(s)
- Fatemeh Mousavi
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
| | - Barbara Bojko
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
| | - Janusz Pawliszyn
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada.
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66
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Zhang Y, Yang Y, Li Y, Zhang M, Wang X, Du X. Growth of cedar-like Au nanoparticles coating on an etched stainless steel wire and its application for selective solid-phase microextraction. Anal Chim Acta 2015; 876:55-62. [DOI: 10.1016/j.aca.2015.03.044] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Revised: 03/23/2015] [Accepted: 03/25/2015] [Indexed: 01/04/2023]
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67
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Sorption of amitriptyline and amphetamine to mixed-mode solid-phase microextraction in different test conditions. J Chromatogr A 2015; 1390:28-38. [DOI: 10.1016/j.chroma.2015.02.065] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2014] [Revised: 01/17/2015] [Accepted: 02/20/2015] [Indexed: 01/22/2023]
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68
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Scientific Opinion on the safety of the change in the production method of L-glutamic acid (E620), monosodium L-glutamate (E621), monopotassium L-glutamate (E622), calcium di-L-glutamate (E623), monoammonium L-glutamate (E624) and magnesium di-L-glutamate. EFSA J 2015. [DOI: 10.2903/j.efsa.2015.3981] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
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69
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Liu S, Zhou Y, Zheng J, Xu J, Jiang R, Shen Y, Jiang J, Zhu F, Su C, Ouyang G. Isoreticular bio-MOF 100–102 coated solid-phase microextraction fibers for fast and sensitive determination of organic pollutants by the pore structure dominated mechanism. Analyst 2015; 140:4384-7. [DOI: 10.1039/c5an00775e] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The stepwise ligand exchange strategy was successfully utilized for the improvement of adsorption ability of a series of bio-MOFs SPME fibers.
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70
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Boyacı E, Rodríguez-Lafuente Á, Gorynski K, Mirnaghi F, Souza-Silva ÉA, Hein D, Pawliszyn J. Sample preparation with solid phase microextraction and exhaustive extraction approaches: Comparison for challenging cases. Anal Chim Acta 2014; 873:14-30. [PMID: 25911426 DOI: 10.1016/j.aca.2014.12.051] [Citation(s) in RCA: 131] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2014] [Revised: 12/22/2014] [Accepted: 12/27/2014] [Indexed: 10/24/2022]
Abstract
In chemical analysis, sample preparation is frequently considered the bottleneck of the entire analytical method. The success of the final method strongly depends on understanding the entire process of analysis of a particular type of analyte in a sample, namely: the physicochemical properties of the analytes (solubility, volatility, polarity etc.), the environmental conditions, and the matrix components of the sample. Various sample preparation strategies have been developed based on exhaustive or non-exhaustive extraction of analytes from matrices. Undoubtedly, amongst all sample preparation approaches, liquid extraction, including liquid-liquid (LLE) and solid phase extraction (SPE), are the most well-known, widely used, and commonly accepted methods by many international organizations and accredited laboratories. Both methods are well documented and there are many well defined procedures, which make them, at first sight, the methods of choice. However, many challenging tasks, such as complex matrix applications, on-site and in vivo applications, and determination of matrix-bound and free concentrations of analytes, are not easily attainable with these classical approaches for sample preparation. In the last two decades, the introduction of solid phase microextraction (SPME) has brought significant progress in the sample preparation area by facilitating on-site and in vivo applications, time weighted average (TWA) and instantaneous concentration determinations. Recently introduced matrix compatible coatings for SPME facilitate direct extraction from complex matrices and fill the gap in direct sampling from challenging matrices. Following introduction of SPME, numerous other microextraction approaches evolved to address limitations of the above mentioned techniques. There is not a single method that can be considered as a universal solution for sample preparation. This review aims to show the main advantages and limitations of the above mentioned sample preparation approaches and the applicability and capability of each technique for challenging cases such as complex matrices, on-site applications and automation.
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Affiliation(s)
- Ezel Boyacı
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
| | - Ángel Rodríguez-Lafuente
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
| | - Krzysztof Gorynski
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada; Department of Pharmacodynamics and Molecular Pharmacology, Collegium Medicum in Bydgoszcz Nicolaus Copernicus University in Torun, Jurasza 2, 85-089 Bydgoszcz, Poland
| | - Fatemeh Mirnaghi
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada; Emergency Science and Technology Section, Environment Canada, 335 River Road, Ottawa, Ontario K1A 0H3, Canada
| | - Érica A Souza-Silva
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
| | - Dietmar Hein
- Professional Analytical System (PAS) Technology, Magdala, Germany
| | - Janusz Pawliszyn
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada.
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71
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Yin P, Xu G. Current state-of-the-art of nontargeted metabolomics based on liquid chromatography-mass spectrometry with special emphasis in clinical applications. J Chromatogr A 2014; 1374:1-13. [PMID: 25444251 DOI: 10.1016/j.chroma.2014.11.050] [Citation(s) in RCA: 83] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2014] [Revised: 11/16/2014] [Accepted: 11/17/2014] [Indexed: 12/21/2022]
Abstract
Metabolomics, as a part of systems biology, has been widely applied in different fields of life science by studying the endogenous metabolites. The development and applications of liquid chromatography (LC) coupled with high resolution mass spectrometry (MS) greatly improve the achievable data quality in non-targeted metabolic profiling. However, there are still some emerging challenges to be covered in LC-MS based metabolomics. Here, recent approaches about sample collection and preparation, instrumental analysis, and data handling of LC-MS based metabolomics are summarized, especially in the analysis of clinical samples. Emphasis is put on the improvement of analytical techniques including the combination of different LC columns, isotope coded derivatization methods, pseudo-targeted LC-MS method, new data analysis algorithms and structural identification of important metabolites.
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Affiliation(s)
- Peiyuan Yin
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Guowang Xu
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
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72
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Ion exchange membranes as novel passive sampling material for organic ions: Application for the determination of freely dissolved concentrations. J Chromatogr A 2014; 1370:17-24. [DOI: 10.1016/j.chroma.2014.10.041] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2014] [Revised: 10/13/2014] [Accepted: 10/14/2014] [Indexed: 11/17/2022]
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73
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74
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David A, Abdul-Sada A, Lange A, Tyler CR, Hill EM. A new approach for plasma (xeno)metabolomics based on solid-phase extraction and nanoflow liquid chromatography-nanoelectrospray ionisation mass spectrometry. J Chromatogr A 2014; 1365:72-85. [PMID: 25260345 DOI: 10.1016/j.chroma.2014.09.001] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2014] [Revised: 08/29/2014] [Accepted: 09/01/2014] [Indexed: 11/30/2022]
Abstract
Current metabolite profiling methods based on liquid chromatography-mass spectrometry (LC-MS) platforms do not detect many of the components present at trace concentrations in extracts of plasma due to their low ionisation efficiency or to interference from highly abundant compounds. Nanoflow LC-nanospray MS platforms, which are commonly used in proteomics, could overcome these limitations and significantly increase analytical sensitivity and coverage of the plasma (xeno)metabolome (i.e., metabolites and xenobiotics), but require small injection volumes (<0.5μL). In this study, we developed sample preparation methods to remove ion suppressive phospholipids and concentrate remaining components of the plasma (xeno)metabolome in order to analyse sub-microliter volumes of plasma extracts for nanoflow ultra-high-performance liquid chromatography-nanoelectrospray ionisation-time-of-flight mass spectrometry (nUHPLC-nESI-TOFMS). These methods use phospholipid filtration plates in combination with polymeric or mixed mode exchange solid-phase extraction (SPE). The phospholipid filtration plates removed >94% of the predominant phospholipid/lysophospholipid species from plasma, whilst absolute recoveries of 63 selected (xeno)metabolites from spiked plasma were generally between 60 and 104%. After a further SPE step, recoveries of test compounds were between 50 and 81%. Studies revealed that both the sample preparation methodology and nUHPLC-nESI-TOFMS analyses gave acceptable repeatability. A qualitative comparison of SPE methods revealed that sample concentration by either polymer or mixed mode ion-exchange SPE gave comprehensive metabolite coverage of plasma extracts, but the use of cation exchange SPE significantly increased detection of many cationic compounds in the sample extracts. Method detection limits for steroid, eicosanoid and bile metabolites were <1.0ng/mL plasma and for pharmaceutical contaminants were between 0.01 and 30ng/mL plasma. Comparison of the phospholipid removal/cation exchange SPE and the classical protein precipitation (PPT) sample preparation methodologies revealed that both methods detected the same range of (xeno)metabolites. However, unlike PPT extracts, the SPE preparations allowed direct injection of more concentrated plasma extracts onto the nUHPLC-nESI-TOFMS platform without blockage of the nanocolumn or nanospray, thus resulting in a wider coverage of the (xeno)metabolome. This is the first work to demonstrate the significantly enhanced sensitivity arising from the use of concentrated SPE sample preparations and direct nUHPLC-nESI-TOFMS analysis for untargeted profiling of plasma samples and constitutes a step forward for identifying mixtures of chemical stressors accumulated in blood as well as the disruption of key metabolite pathways in the same sample.
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Affiliation(s)
- Arthur David
- School of Life Sciences, University of Sussex, Brighton BN1 9QG, UK
| | - Alaa Abdul-Sada
- School of Life Sciences, University of Sussex, Brighton BN1 9QG, UK
| | - Anke Lange
- Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK
| | - Charles R Tyler
- Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK
| | - Elizabeth M Hill
- School of Life Sciences, University of Sussex, Brighton BN1 9QG, UK.
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75
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Gowda GAN, Raftery D. Quantitating metabolites in protein precipitated serum using NMR spectroscopy. Anal Chem 2014; 86:5433-40. [PMID: 24796490 PMCID: PMC4045325 DOI: 10.1021/ac5005103] [Citation(s) in RCA: 144] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2014] [Accepted: 05/05/2014] [Indexed: 01/04/2023]
Abstract
Quantitative NMR-based metabolite profiling is challenged by the deleterious effects of abundant proteins in the intact blood plasma/serum, which underscores the need for alternative approaches. Protein removal by ultrafiltration using low molecular weight cutoff filters thus represents an important step. However, protein precipitation, an alternative and simple approach for protein removal, lacks detailed quantitative assessment for use in NMR based metabolomics. In this study, we have comprehensively evaluated the performance of protein precipitation using methanol, acetonitrile, perchloric acid, and trichloroacetic acid and ultrafiltration approaches using 1D and 2D NMR, based on the identification and absolute quantitation of 44 human blood metabolites, including a few identified for the first time in the NMR spectra of human serum. We also investigated the use of a "smart isotope tag," (15)N-cholamine for further resolution enhancement, which resulted in the detection of a number of additional metabolites. (1)H NMR of both protein precipitated and ultrafiltered serum detected all 44 metabolites with comparable reproducibility (average CV, 3.7% for precipitation; 3.6% for filtration). However, nearly half of the quantified metabolites in ultrafiltered serum exhibited 10-74% lower concentrations; specifically, tryptophan, benzoate, and 2-oxoisocaproate showed much lower concentrations compared to protein precipitated serum. These results indicate that protein precipitation using methanol offers a reliable approach for routine NMR-based metabolomics of human blood serum/plasma and should be considered as an alternative to ultrafiltration. Importantly, protein precipitation, which is commonly used by mass spectrometry (MS), promises avenues for direct comparison and correlation of metabolite data obtained from the two analytical platforms to exploit their combined strength in the metabolomics of blood.
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Affiliation(s)
- G. A. Nagana Gowda
- Northwest Metabolomics
Research Center, Anesthesiology and Pain Medicine, and Department of
Chemistry, University of Washington, Seattle, Washington 98109, United States
| | - Daniel Raftery
- Northwest Metabolomics
Research Center, Anesthesiology and Pain Medicine, and Department of
Chemistry, University of Washington, Seattle, Washington 98109, United States
- Fred Hutchinson
Cancer Research Center, Seattle, Washington 98109, United States
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76
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Multiwalled carbon nanotubes-doped polymeric ionic liquids coating for multiple headspace solid-phase microextraction. Talanta 2014; 123:18-24. [DOI: 10.1016/j.talanta.2014.01.030] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2013] [Revised: 01/20/2014] [Accepted: 01/23/2014] [Indexed: 11/23/2022]
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77
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Low invasive in vivo tissue sampling for monitoring biomarkers and drugs during surgery. J Transl Med 2014; 94:586-94. [PMID: 24687119 DOI: 10.1038/labinvest.2014.44] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2013] [Accepted: 02/02/2014] [Indexed: 12/16/2022] Open
Abstract
The techniques currently used for drug, metabolite, and biomarker determination are based on sample collection, and therefore they are not suitable for repeated analysis because of the high invasiveness. Here, we present a novel method of biochemical analysis directly in organ during operation without need of a separate sample collection step: solid-phase microextraction (SPME). The approach is based on flexible microprobe coated with biocompatible extraction phase that is inserted to the tissue with no damage or disturbance of the organ. The method was evaluated during lung and liver transplantations using normothermic ex vivo liver perfusion (NEVLP) and ex vivo lung perfusion (EVLP). The study demonstrated feasibility of the method to extract wide range of endogenous compounds and drugs. Statistical analysis allowed observing metabolic changes of lung during cold ischemic time, perfusion, and reperfusion. It was also demonstrated that the level of drugs and their metabolites can be monitored over time. Based on the methylprednisolone as a selected example, the impairment of enzymatic properties of liver was detected in the injured organs but not in healthy control. This finding was supported by changes in pathways of endogenous metabolites. The SPME probe was also used for analysis of perfusion fluid using stopcock connection. The evaluation of biochemical profile of perfusates demonstrated potential of the approach for monitoring organ function during ex vivo perfusion. The simplicity of the device makes it convenient to use by medical personnel. With the microprobe, different areas of the organ or various organs can be sampled simultaneously. The technology allows assessment of organ function by biochemical profiling, determination of potential biomarkers, and drug monitoring. The use of this method for preintervention analysis could enhance the decision-making process for the best possible personalized approach, whereas post-transplantation monitoring would be used for graft assessments and fast response in case of organ failure.
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78
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In situ chemical exploration of underwater ecosystems with microsampling/enrichment device. J Chromatogr A 2014; 1328:113-7. [DOI: 10.1016/j.chroma.2013.12.031] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2013] [Revised: 11/17/2013] [Accepted: 12/10/2013] [Indexed: 11/19/2022]
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79
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Pereira J, Silva CL, Perestrelo R, Gonçalves J, Alves V, Câmara JS. Re-exploring the high-throughput potential of microextraction techniques, SPME and MEPS, as powerful strategies for medical diagnostic purposes. Innovative approaches, recent applications and future trends. Anal Bioanal Chem 2014; 406:2101-22. [DOI: 10.1007/s00216-013-7527-4] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2013] [Revised: 11/16/2013] [Accepted: 11/20/2013] [Indexed: 11/30/2022]
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80
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Integrative biological analysis for neuropsychopharmacology. Neuropsychopharmacology 2014; 39:5-23. [PMID: 23800968 PMCID: PMC3857644 DOI: 10.1038/npp.2013.156] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/03/2013] [Revised: 04/18/2013] [Accepted: 04/19/2013] [Indexed: 01/24/2023]
Abstract
Although advances in psychotherapy have been made in recent years, drug discovery for brain diseases such as schizophrenia and mood disorders has stagnated. The need for new biomarkers and validated therapeutic targets in the field of neuropsychopharmacology is widely unmet. The brain is the most complex part of human anatomy from the standpoint of number and types of cells, their interconnections, and circuitry. To better meet patient needs, improved methods to approach brain studies by understanding functional networks that interact with the genome are being developed. The integrated biological approaches--proteomics, transcriptomics, metabolomics, and glycomics--have a strong record in several areas of biomedicine, including neurochemistry and neuro-oncology. Published applications of an integrated approach to projects of neurological, psychiatric, and pharmacological natures are still few but show promise to provide deep biological knowledge derived from cells, animal models, and clinical materials. Future studies that yield insights based on integrated analyses promise to deliver new therapeutic targets and biomarkers for personalized medicine.
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81
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Nunes de Paiva MJ, Menezes HC, de Lourdes Cardeal Z. Sampling and analysis of metabolomes in biological fluids. Analyst 2014; 139:3683-94. [DOI: 10.1039/c4an00583j] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Metabolome analysis involves the study of small molecules that are involved in the metabolic responses that occur through patho-physiological changes caused by genetic stimuli or chemical agents.
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Affiliation(s)
- Maria José Nunes de Paiva
- Departamento de Química
- ICEx
- Universidade Federal de Minas Gerais
- 6627-31270901 Belo Horizonte, Brazil
- Universidade Federal de São João Del Rei
| | - Helvécio Costa Menezes
- Departamento de Química
- ICEx
- Universidade Federal de Minas Gerais
- 6627-31270901 Belo Horizonte, Brazil
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82
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Boyacı E, Gorynski K, Rodriguez-Lafuente A, Bojko B, Pawliszyn J. Introduction of solid-phase microextraction as a high-throughput sample preparation tool in laboratory analysis of prohibited substances. Anal Chim Acta 2013; 809:69-81. [PMID: 24418135 DOI: 10.1016/j.aca.2013.11.056] [Citation(s) in RCA: 77] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2013] [Revised: 11/19/2013] [Accepted: 11/29/2013] [Indexed: 10/25/2022]
Abstract
A fully automated, high-throughput method based on thin-film solid-phase microextraction (SPME) and liquid chromatography-mass spectrometry was developed for simultaneous quantitative analysis of 110 doping compounds, selected from ten classes and varying in physical and chemical properties. Among four tested extraction phases, C18 blades were chosen, as they provided optimum recoveries and the lowest carryover effect. The SPME method was optimized in terms of extraction pH, ionic strength of the sample, washing solution, extraction and desorption times for analysis of urine samples. Chromatographic separation was obtained in reversed-phase model; for detection, two mass spectrometers were used: triple quadrupole and full scan orbitrap. These combinations allowed for selective analysis of targeted compounds, as well as a retrospective study for known and unknown compounds. The developed method was validated according to the Food and Drug Administration (FDA) criteria, taking into account Minimum Required Performance Level (MRPL) values required by the World Anti-Doping Agency (WADA). In addition to analysis of free substances, it was also shown that the proposed method is able to extract the glucuronated forms of the compounds. The developed assay offers fast and reliable analysis of various prohibited substances, an attractive alternative to the standard methods that are currently used in anti-doping laboratories.
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Affiliation(s)
- Ezel Boyacı
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, ON, Canada N2L 3G1
| | - Krzysztof Gorynski
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, ON, Canada N2L 3G1
| | - Angel Rodriguez-Lafuente
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, ON, Canada N2L 3G1
| | - Barbara Bojko
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, ON, Canada N2L 3G1
| | - Janusz Pawliszyn
- Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, ON, Canada N2L 3G1.
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83
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Evaluation of passive samplers with neutral or ion-exchange polymer coatings to determine freely dissolved concentrations of the basic surfactant lauryl diethanolamine: Measurements of acid dissociation constant and organic carbon–water sorption coefficient. J Chromatogr A 2013; 1315:8-14. [DOI: 10.1016/j.chroma.2013.09.041] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2013] [Revised: 09/06/2013] [Accepted: 09/10/2013] [Indexed: 11/23/2022]
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84
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Goryński K, Bojko B, Nowaczyk A, Buciński A, Pawliszyn J, Kaliszan R. Quantitative structure-retention relationships models for prediction of high performance liquid chromatography retention time of small molecules: endogenous metabolites and banned compounds. Anal Chim Acta 2013; 797:13-9. [PMID: 24050665 DOI: 10.1016/j.aca.2013.08.025] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2013] [Revised: 08/10/2013] [Accepted: 08/13/2013] [Indexed: 12/16/2022]
Abstract
Quantitative structure-retention relationship (QSRR) is a technique capable of improving the identification of analytes by predicting their retention time on a liquid chromatography column (LC) and/or their properties. This approach is particularly useful when LC is coupled with a high-resolution mass spectrometry (HRMS) platform. The main aim of the present study was to develop and describe appropriate QSRR models that provide usable predictive capability, allowing false positive identification to be removed during the interpretation of metabolomics data, while additionally increasing confidence of experimental results in doping control area. For this purpose, a dataset consisting of 146 drugs, metabolites and banned compounds from World Anti-Doping Agency (WADA) lists, was used. A QSRR study was carried out separately on high quality retention data determined by reversed-phase (RP-LC-HRMS) and hydrophilic interaction chromatography (HILIC-LC-HRMS) systems, employing a single protocol for each system. Multiple linear regression (MLR) was applied to construct the linear QSRR models based on a variety of theoretical molecular descriptors. The regression equations included a set of three descriptors for each model: ALogP, BELe6, R2p and ALogP(2), FDI, BLTA96, were used in the analysis of reversed-phase and HILIC column models, respectively. Statistically significant QSRR models (squared correlation coefficient for model fitting, R(2)=0.95 for RP and R(2)=0.84 for HILIC) indicate a strong correlation between retention time and the molecular descriptors. An evaluation of the best correlation models, performed by validation of each model using three tests (leave-one-out, leave-many-out, external tests), demonstrated the reliability of the models. This paper provides a practical and effective method for analytical chemists working with LC/HRMS platforms to improve predictive confidence of studies that seek to identify small molecules.
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Affiliation(s)
- Krzysztof Goryński
- Department of Medicinal Chemistry, Collegium Medicum in Bydgoszcz Nicolaus Copernicus University in Toruń, Jurasza 2, 85-094 Bydgoszcz, Poland; Department of Chemistry, University of Waterloo, Waterloo, Ontario, Canada N2L 3G1
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85
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Elucidating the sorption mechanism of “mixed-mode” SPME using the basic drug amphetamine as a model compound. Anal Chim Acta 2013; 782:21-7. [DOI: 10.1016/j.aca.2013.04.030] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2013] [Revised: 04/12/2013] [Accepted: 04/14/2013] [Indexed: 11/19/2022]
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86
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Feng J, Qiu H, Liu X, Jiang S, Feng J. The development of solid-phase microextraction fibers with metal wires as supporting substrates. Trends Analyt Chem 2013. [DOI: 10.1016/j.trac.2013.01.015] [Citation(s) in RCA: 79] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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87
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Hossain SZ, Bojko B, Pawliszyn J. Automated SPME–GC–MS monitoring of headspace metabolomic responses of E. coli to biologically active components extracted by the coating. Anal Chim Acta 2013; 776:41-9. [DOI: 10.1016/j.aca.2013.03.018] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2012] [Revised: 02/18/2013] [Accepted: 03/08/2013] [Indexed: 10/27/2022]
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88
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Metabolic profiling of plasma from cardiac surgical patients concurrently administered with tranexamic acid: DI-SPME-LC-MS analysis. J Pharm Anal 2013; 4:6-13. [PMID: 29403864 PMCID: PMC5761052 DOI: 10.1016/j.jpha.2013.03.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2012] [Accepted: 03/14/2013] [Indexed: 11/24/2022] Open
Abstract
A metabolic profile of plasma samples from patients undergoing heart surgery with the use of cardiopulmonary bypass (CPB) and concurrent administration of tranexamic acid was determined. Direct immersion solid phase microextraction (DI-SPME), a new sampling and sample preparation tool for metabolomics, was used in this study for the first time to investigate clinical samples. The results showed alteration of diverse compounds involved in different biochemical pathways. The most significant contribution in changes induced by surgery and applied pharmacotherapy was noticed in metabolic profile of lysophospholipids, triacylglycerols, mediators of platelet aggregation, and linoleic acid metabolites. Two cases of individual response to treatment were also reported.
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89
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Analysis of human saliva metabolome by direct immersion solid-phase microextraction LC and benchtop orbitrap MS. Bioanalysis 2013; 5:783-92. [DOI: 10.4155/bio.13.35] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Background: Saliva samples collected from one 58 year old male and one 35 year old female during 7 days of fasting were analyzed by direct immersion of both C18 and mixed-mode biocompatible solid-phase microextraction fibers, in combination with a LC–MS method using a benchtop orbitrap instrument in both positive and negative ionization modes, in order to evaluate the difference in terms of metabolite coverage. Results: The mixed-mode coating provided better results, with the simultaneous extraction of a higher number of both hydrophilic and hydrophobic metabolites. The ability of detected features to distinguish differences between the individuals and changes in saliva metabolome induced by diet was also demonstrated. Conclusion: Saliva may be useful for medical diagnostics as it is non-invasive. The use of biocompatible solid-phase microextraction fibers can play an important role as an alternative sample preparation method for untargeted LC–MS metabolomics studies on human saliva because it provides simultaneous extraction of metabolites with a wide range of polarity, thus allowing the detection of changes in metabolic pathways with unsupervised statistical analyses.
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90
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91
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Kuehnbaum NL, Britz-McKibbin P. New Advances in Separation Science for Metabolomics: Resolving Chemical Diversity in a Post-Genomic Era. Chem Rev 2013; 113:2437-68. [DOI: 10.1021/cr300484s] [Citation(s) in RCA: 201] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Naomi L. Kuehnbaum
- Department of Chemistry
and Chemical Biology, McMaster University, Hamilton, Canada
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92
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Souza Silva EA, Risticevic S, Pawliszyn J. Recent trends in SPME concerning sorbent materials, configurations and in vivo applications. Trends Analyt Chem 2013. [DOI: 10.1016/j.trac.2012.10.006] [Citation(s) in RCA: 141] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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93
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Beach DG, Gabryelski W. Linear and Nonlinear Regimes of Electrospray Signal Response in Analysis of Urine by Electrospray Ionization-High Field Asymmetric Waveform Ion Mobility Spectrometry-MS and Implications for Nontarget Quantification. Anal Chem 2013; 85:2127-34. [DOI: 10.1021/ac3027542] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniel G. Beach
- Department of Chemistry, University of Guelph, Guelph, Ontario, N1G 2W1, Canada
| | - Wojciech Gabryelski
- Department of Chemistry, University of Guelph, Guelph, Ontario, N1G 2W1, Canada
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94
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Abstract
Conventional in vitro or ex vivo bioanalytical quantitative sample preparation methods for the determination of compounds in biological tissues are often coupled with challenges in obtaining an assay representative of the system of interest. The rising interest in in vivo microsampling bioanalytical methods is due to the unique advantages they offer over their in vitro counterparts. In vivo solid-phase microextraction (SPME), a diffusion-based microsampling tool, has been successfully applied in recent studies to various biological systems. This review presents recent trends in tissue bioanalysis using in vivo SPME as a sample preparation tool. Efforts were made to discuss the various bioapplications of the method while highlighting possible strategies for improved sensitivity where needed. In vivo SPME devices currently employed for the various applications have also been described. In addition, we highlight selectivity of a new class of biocompatible coatings that can potentially improve the coverage of metabolites for untargeted metabolomics.
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95
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Bojko B, Cudjoe E, Gómez-Ríos GA, Gorynski K, Jiang R, Reyes-Garcés N, Risticevic S, Silva ÉA, Togunde O, Vuckovic D, Pawliszyn J. SPME – Quo vadis? Anal Chim Acta 2012; 750:132-51. [DOI: 10.1016/j.aca.2012.06.052] [Citation(s) in RCA: 139] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2012] [Revised: 06/29/2012] [Accepted: 06/30/2012] [Indexed: 01/01/2023]
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96
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Development of coatings for automated 96-blade solid phase microextraction-liquid chromatography–tandem mass spectrometry system, capable of extracting a wide polarity range of analytes from biological fluids. J Chromatogr A 2012; 1261:91-8. [DOI: 10.1016/j.chroma.2012.07.012] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2012] [Revised: 06/30/2012] [Accepted: 07/05/2012] [Indexed: 11/22/2022]
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97
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Chen Y, Droge ST, Hermens JL. Analyzing freely dissolved concentrations of cationic surfactant utilizing ion-exchange capability of polyacrylate coated solid-phase microextraction fibers. J Chromatogr A 2012; 1252:15-22. [DOI: 10.1016/j.chroma.2012.06.080] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2012] [Accepted: 06/22/2012] [Indexed: 10/28/2022]
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98
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Hellou J, Ross NW, Moon TW. Glutathione, glutathione S-transferase, and glutathione conjugates, complementary markers of oxidative stress in aquatic biota. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2012; 19:2007-23. [PMID: 22532120 DOI: 10.1007/s11356-012-0909-x] [Citation(s) in RCA: 108] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2011] [Accepted: 04/02/2012] [Indexed: 05/22/2023]
Abstract
Contaminants are ubiquitous in the environment and their impacts are of increasing concern due to human population expansion and the generation of deleterious effects in aquatic species. Oxidative stress can result from the presence of persistent organic pollutants, metals, pesticides, toxins, pharmaceuticals, and nanomaterials, as well as changes in temperature or oxygen in water, the examined species, with differences in age, sex, or reproductive cycle of an individual. The antioxidant role of glutathione (GSH), accompanied by the formation of its disulfide dimer, GSSG, and metabolites in response to chemical stress, are highlighted in this review along with, to some extent, that of glutathione S-transferase (GST). The available literature concerning the use and analysis of these markers will be discussed, focusing on studies of aquatic organisms. The inclusion of GST within the suite of biomarkers used to assess the effects of xenobiotics is recommended to complement that of lipid peroxidation and mixed function oxygenation. Combining the analysis of GSH, GSSG, and conjugates would be beneficial in pinpointing the role of contaminants within the plethora of causes that could lead to the toxic effects of reactive oxygen species.
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Affiliation(s)
- Jocelyne Hellou
- Bedford Institute of Oceanography, Department of Fisheries and Oceans, Dartmouth, Nova Scotia, Canada.
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Rocha SM, Caldeira M, Carrola J, Santos M, Cruz N, Duarte IF. Exploring the human urine metabolomic potentialities by comprehensive two-dimensional gas chromatography coupled to time of flight mass spectrometry. J Chromatogr A 2012; 1252:155-63. [PMID: 22776727 DOI: 10.1016/j.chroma.2012.06.067] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2012] [Revised: 06/08/2012] [Accepted: 06/19/2012] [Indexed: 12/01/2022]
Abstract
Metabolomics represents an emerging issue that can aid in the diagnosis and/or prognosis of different diseases. Metabolomic study of urine is particularly interesting as it can be on the base of the developing of new faster and non-invasive methodologies. In response to this actual trend, comprehensive two-dimensional gas chromatography-time of flight mass spectrometry (GC×GC-ToFMS) combined with headspace solid phase microextraction (HS-SPME) is applied, for the first time to our knowledge, to the untargeted and comprehensive study of the volatile composition of human urine. From a total of ca. 700 compounds detected per sample, 294 were tentatively identified and distributed over the chemical families of hydrocarbons, amines, amides, esters, ketones, aldehydes, alcohols, carboxylic acids, ethers, nitriles, halides, sulfides, thiols, terpenoids, and heterocyclic compounds. To our knowledge, this is the most complete information available so far about whole human urine volatile composition, which represents a valuable data for future advanced studies in the clinical field based on urine fingerprinting. Relevant SPME and GC×GC parameters were considered. Complex sample characterization of human urine is significantly simplified due to the structured GC×GC chromatogram that produces distinct spaces for metabolite chemical families. Furthermore, the potential of this methodology in health related applications was explored by comparing the urinary volatile profiles between smoker (high-risk population for lung cancer) vs. non-smoker adults, focusing on metabolites related to oxidative stress (aliphatic alkanes and aldehydes). In spite of the small sample numbers considered, the results suggest that the urinary volatile profiles may be useful for differentiating subjects with different physiological conditions, thus making it worth to further explore its diagnostic potential.
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Affiliation(s)
- Sílvia M Rocha
- QOPNA, Departamento de Química, Universidade de Aveiro, 3810-193 Aveiro, Portugal.
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Yin XY, Luo YM, Fu JJ, Zhong YQ, Liu QS. Determination of hyperoside and isoquercitrin in rat plasma by membrane-protected micro-solid-phase extraction with high-performance liquid chromatography. J Sep Sci 2012; 35:384-91. [PMID: 22258808 DOI: 10.1002/jssc.201100867] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
A novel method, micro-solid-phase extraction based on membrane-protected molecularly imprinted polymer, was developed to extract hyperoside and isoquercitrin in rat plasma. Synthesized hyperoside MIPs were packed in a porous polyether sulfone membrane envelope to perform extraction. The parameters sorbent materials, membrane types, extraction time and desorption conditions were optimized for micro-solid-phase extraction. Under the optimal conditions, correlation coefficients, 0.998 and 0.999, were obtained for hyperoside and isoquercitrin, respectively, with the linear range between 1 and 120 μg/mL. The absolute extraction recoveries from 84.5 to 89.3% were found. The method detection limits of hyperoside and isoquercitrin were 0.24 and 0.22 μg/mL, respectively. Compared with traditional methods, solid-phase extraction, liquid-liquid extraction and protein precipitation, the developed method was simple, highly efficient for extraction, environmentally friendly, and particularly suitable for complex biological samples.
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Affiliation(s)
- Xiao-Ying Yin
- College of Pharmacy, Jiangxi University of Traditional Chinese Medicine, Nanchang, PR China
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