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Keiner R, Herrmann M, Küsel K, Popp J, Frosch T. Rapid monitoring of intermediate states and mass balance of nitrogen during denitrification by means of cavity enhanced Raman multi-gas sensing. Anal Chim Acta 2015; 864:39-47. [PMID: 25732425 DOI: 10.1016/j.aca.2015.02.007] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2014] [Revised: 01/29/2015] [Accepted: 02/05/2015] [Indexed: 11/18/2022]
Abstract
The comprehensive investigation of changes in N cycling has been challenging so far due to difficulties with measuring gases such as N2 and N2O simultaneously. In this study we introduce cavity enhanced Raman gas spectroscopy as a new analytical methodology for tracing the stepwise reduction of (15)N-labelled nitrate by the denitrifying bacteria Pseudomonas stutzeri. The unique capabilities of Raman multi-gas analysis enabled real-time, continuous, and non-consumptive quantification of the relevant gases ((14)N2, (14)N2O, O2, and CO2) and to trace the fate of (15)N-labeled nitrate substrate ((15)N2, (15)N2O) added to a P. stutzeri culture with one single measurement. Using this new methodology, we could quantify the kinetics of the formation and degradation for all gaseous compounds (educts and products) and thus study the reaction orders. The gas quantification was complemented with the analysis of nitrate and nitrite concentrations for the online monitoring of the total nitrogen element budget. The simultaneous quantification of all gases also enabled the contactless and sterile online acquisition of the pH changes in the P. stutzeri culture by the stoichiometry of the redox reactions during denitrification and the CO2-bicarbonate equilibrium. Continuous pH monitoring - without the need to insert an electrode into solution - elucidated e.g. an increase in the slope of the pH value coinciding with an accumulation of nitrite, which in turn led to a temporary accumulation of N2O, due to an inhibition of nitrous oxide reductase. Cavity enhanced Raman gas spectroscopy has a high potential for the assessment of denitrification processes and can contribute substantially to our understanding of nitrogen cycling in both natural and agricultural systems.
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Affiliation(s)
- Robert Keiner
- Institute of Physical Chemistry, Friedrich Schiller University Jena, Jena 07743, Germany; Leibniz Institute of Photonic Technology, Jena 07745, Germany
| | - Martina Herrmann
- Institute of Ecology, Friedrich Schiller University Jena, Jena 07743, Germany; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig 04103, Germany
| | - Kirsten Küsel
- Institute of Ecology, Friedrich Schiller University Jena, Jena 07743, Germany; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig 04103, Germany
| | - Jürgen Popp
- Institute of Physical Chemistry, Friedrich Schiller University Jena, Jena 07743, Germany; Leibniz Institute of Photonic Technology, Jena 07745, Germany; InfectoGnostics Forschungscampus, Zentrum für Angewandte Forschung, Jena 07743, Germany; Abbe School of Photonics, Friedrich Schiller University, Jena, Germany
| | - Torsten Frosch
- Institute of Physical Chemistry, Friedrich Schiller University Jena, Jena 07743, Germany; Leibniz Institute of Photonic Technology, Jena 07745, Germany; InfectoGnostics Forschungscampus, Zentrum für Angewandte Forschung, Jena 07743, Germany.
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Raman spectroscopic investigation of 13CO 2 labeling and leaf dark respiration of Fagus sylvatica L. (European beech). Anal Bioanal Chem 2015; 407:1813-7. [PMID: 25577365 DOI: 10.1007/s00216-014-8446-8] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2014] [Revised: 11/27/2014] [Accepted: 12/22/2014] [Indexed: 10/24/2022]
Abstract
An important issue, in times of climate change and more extreme weather events, is the investigation of forest ecosystem reactions to these events. Longer drought periods stress the vitality of trees and promote mass insect outbreaks, which strongly affect ecosystem processes and services. Cavity-enhanced Raman gas spectrometry was applied for online multi-gas analysis of the gas exchange rates of O2 and CO2 and the labeling of Fagus sylvatica L. (European beech) seedlings with (13)CO2. The rapid monitoring of all these gases simultaneously allowed for the separation of photosynthetic uptake of CO2 by the beech seedlings and a constant (12)CO2 efflux via respiration and thus for a correction of the measured (12)CO2 concentrations in course of the labeling experiment. The effects of aphid infestation with the woolly beech aphid (Phyllaphis fagi L.) as well as the effect of a drought period on the respirational gas exchange were investigated. A slightly decreased respirational activity of drought-stressed seedlings in comparison to normally watered seedlings was found already for a low drought intensity. Cavity-enhanced Raman gas monitoring of O2, (12)CO2, and (13)CO2 was proven to be a powerful new tool for studying the effect of drought stress and aphid infestation on the respirational activity of European beech seedlings as an example of important forest species in Central Europe.
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Hanf S, Fischer S, Hartmann H, Keiner R, Trumbore S, Popp J, Frosch T. Online investigation of respiratory quotients in Pinus sylvestris and Picea abies during drought and shading by means of cavity-enhanced Raman multi-gas spectrometry. Analyst 2015; 140:4473-81. [DOI: 10.1039/c5an00402k] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
CERS monitoring of RQ values enables the analysis of nutrition shifts in trees in response to environmental stress.
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Affiliation(s)
- Stefan Hanf
- Leibniz Institute of Photonic Technology
- Jena
- Germany
- Max Planck Institute for Biogeochemistry
- Jena
| | | | | | | | | | - Jürgen Popp
- Leibniz Institute of Photonic Technology
- Jena
- Germany
- Friedrich Schiller University
- Institute for Physical Chemistry
| | - Torsten Frosch
- Leibniz Institute of Photonic Technology
- Jena
- Germany
- Friedrich Schiller University
- Institute for Physical Chemistry
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Hanf S, Bögözi T, Keiner R, Frosch T, Popp J. Fast and Highly Sensitive Fiber-Enhanced Raman Spectroscopic Monitoring of Molecular H2 and CH4 for Point-of-Care Diagnosis of Malabsorption Disorders in Exhaled Human Breath. Anal Chem 2014; 87:982-8. [DOI: 10.1021/ac503450y] [Citation(s) in RCA: 107] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Stefan Hanf
- Leibniz Institute of Photonic Technology, Jena 07745, Germany
- Max Planck Institute for Biogeochemistry, Jena 07745, Germany
| | - Timea Bögözi
- Leibniz Institute of Photonic Technology, Jena 07745, Germany
| | - Robert Keiner
- Leibniz Institute of Photonic Technology, Jena 07745, Germany
| | - Torsten Frosch
- Leibniz Institute of Photonic Technology, Jena 07745, Germany
- Institute for Physical Chemistry, Friedrich Schiller University, Jena 07745, Germany
| | - Jürgen Popp
- Leibniz Institute of Photonic Technology, Jena 07745, Germany
- Institute for Physical Chemistry, Friedrich Schiller University, Jena 07745, Germany
- Abbe Center of Photonics, Friedrich Schiller University, Jena 07745, Germany
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Muro CK, Doty KC, Bueno J, Halámková L, Lednev IK. Vibrational Spectroscopy: Recent Developments to Revolutionize Forensic Science. Anal Chem 2014; 87:306-27. [DOI: 10.1021/ac504068a] [Citation(s) in RCA: 88] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Claire K. Muro
- Chemistry Department, University at Albany, Albany, New York 12222, United States
| | - Kyle C. Doty
- Chemistry Department, University at Albany, Albany, New York 12222, United States
| | - Justin Bueno
- Chemistry Department, University at Albany, Albany, New York 12222, United States
| | - Lenka Halámková
- Chemistry Department, University at Albany, Albany, New York 12222, United States
| | - Igor K. Lednev
- Chemistry Department, University at Albany, Albany, New York 12222, United States
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Hartung A, Kobelke J, Schwuchow A, Wondraczek K, Bierlich J, Popp J, Frosch T, Schmidt MA. Double antiresonant hollow core fiber--guidance in the deep ultraviolet by modified tunneling leaky modes. OPTICS EXPRESS 2014; 22:19131-19140. [PMID: 25320999 DOI: 10.1364/oe.22.019131] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Guiding light inside the hollow cores of microstructured optical fibers is a major research field within fiber optics. However, most of current fibers reveal limited spectral operation ranges between the mid-visible and the infrared and rely on complicated microstructures. Here we report on a new type of hollow-core fiber, showing for the first time distinct transmission windows between the deep ultraviolet and the near infrared. The fiber, guiding in a single mode, operates by the central core mode being anti-resonant to adjacent modes, leading to a novel modified tunneling leaky mode. The fiber design is straightforward to implement and reveals beneficial features such as preselecting the lowest loss mode (Gaussian-like or donut-shaped mode). Fibers with such a unique combination of attributes allow accessing the extremely important deep-UV range with Gaussian-like mode quality and may pave the way for new discoveries in biophotonics, multispectral spectroscopy, photo-initiated chemistry or ultrashort pulse delivery.
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Hanf S, Keiner R, Yan D, Popp J, Frosch T. Fiber-enhanced Raman multigas spectroscopy: a versatile tool for environmental gas sensing and breath analysis. Anal Chem 2014; 86:5278-85. [PMID: 24846710 DOI: 10.1021/ac404162w] [Citation(s) in RCA: 80] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Versatile multigas analysis bears high potential for environmental sensing of climate relevant gases and noninvasive early stage diagnosis of disease states in human breath. In this contribution, a fiber-enhanced Raman spectroscopic (FERS) analysis of a suite of climate relevant atmospheric gases is presented, which allowed for reliable quantification of CH4, CO2, and N2O alongside N2 and O2 with just one single measurement. A highly improved analytical sensitivity was achieved, down to a sub-parts per million limit of detection with a high dynamic range of 6 orders of magnitude and within a second measurement time. The high potential of FERS for the detection of disease markers was demonstrated with the analysis of 27 nL of exhaled human breath. The natural isotopes (13)CO2 and (14)N(15)N were quantified at low levels, simultaneously with the major breath components N2, O2, and (12)CO2. The natural abundances of (13)CO2 and (14)N(15)N were experimentally quantified in very good agreement to theoretical values. A fiber adapter assembly and gas filling setup was designed for rapid and automated analysis of multigas compositions and their fluctuations within seconds and without the need for optical readjustment of the sensor arrangement. On the basis of the abilities of such miniaturized FERS system, we expect high potential for the diagnosis of clinically administered (13)C-labeled CO2 in human breath and also foresee high impact for disease detection via biologically vital nitrogen compounds.
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Affiliation(s)
- Stefan Hanf
- Leibniz Institute of Photonic Technology , Jena, Germany
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Keiner R, Frosch T, Hanf S, Rusznyak A, Akob DM, Küsel K, Popp J. Raman Spectroscopy—An Innovative and Versatile Tool To Follow the Respirational Activity and Carbonate Biomineralization of Important Cave Bacteria. Anal Chem 2013; 85:8708-14. [DOI: 10.1021/ac401699d] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Robert Keiner
- Institute
of Photonic Technology, ‡Institute for Physical Chemistry, §Institute of Ecology,
and ∥Abbe School of Photonics, Friedrich Schiller University, Jena,
Germany
| | - Torsten Frosch
- Institute
of Photonic Technology, ‡Institute for Physical Chemistry, §Institute of Ecology,
and ∥Abbe School of Photonics, Friedrich Schiller University, Jena,
Germany
| | - Stefan Hanf
- Institute
of Photonic Technology, ‡Institute for Physical Chemistry, §Institute of Ecology,
and ∥Abbe School of Photonics, Friedrich Schiller University, Jena,
Germany
| | - Anna Rusznyak
- Institute
of Photonic Technology, ‡Institute for Physical Chemistry, §Institute of Ecology,
and ∥Abbe School of Photonics, Friedrich Schiller University, Jena,
Germany
| | - Denise M. Akob
- Institute
of Photonic Technology, ‡Institute for Physical Chemistry, §Institute of Ecology,
and ∥Abbe School of Photonics, Friedrich Schiller University, Jena,
Germany
| | - Kirsten Küsel
- Institute
of Photonic Technology, ‡Institute for Physical Chemistry, §Institute of Ecology,
and ∥Abbe School of Photonics, Friedrich Schiller University, Jena,
Germany
| | - Jürgen Popp
- Institute
of Photonic Technology, ‡Institute for Physical Chemistry, §Institute of Ecology,
and ∥Abbe School of Photonics, Friedrich Schiller University, Jena,
Germany
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