51
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Schran C, Brezina K, Marsalek O. Committee neural network potentials control generalization errors and enable active learning. J Chem Phys 2020; 153:104105. [DOI: 10.1063/5.0016004] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Christoph Schran
- Charles University, Faculty of Mathematics and Physics, Ke Karlovu 3, 121 16 Prague 2, Czech Republic
| | - Krystof Brezina
- Charles University, Faculty of Mathematics and Physics, Ke Karlovu 3, 121 16 Prague 2, Czech Republic
| | - Ondrej Marsalek
- Charles University, Faculty of Mathematics and Physics, Ke Karlovu 3, 121 16 Prague 2, Czech Republic
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52
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Yao Y, Kanai Y. Temperature dependence of nuclear quantum effects on liquid water via artificial neural network model based on SCAN meta-GGA functional. J Chem Phys 2020; 153:044114. [DOI: 10.1063/5.0012815] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yi Yao
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA
- Department of Mechanical Engineering and Materials Science, Duke University, Durham, North Carolina 27708, USA
| | - Yosuke Kanai
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA
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53
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Novelli F, Guchhait B, Havenith M. Towards Intense THz Spectroscopy on Water: Characterization of Optical Rectification by GaP, OH1, and DSTMS at OPA Wavelengths. MATERIALS (BASEL, SWITZERLAND) 2020; 13:E1311. [PMID: 32183131 PMCID: PMC7143731 DOI: 10.3390/ma13061311] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Revised: 03/05/2020] [Accepted: 03/10/2020] [Indexed: 12/02/2022]
Abstract
Water is the most prominent solvent. The unique properties of water are rooted in the dynamical hydrogen-bonded network. While TeraHertz (THz) radiation can probe directly the collective molecular network, several open issues remain about the interpretation of these highly anharmonic, coupled bands. In order to address this problem, we need intense THz radiation able to drive the liquid into the nonlinear response regime. Firstly, in this study, we summarize the available brilliant THz sources and compare their emission properties. Secondly, we characterize the THz emission by Gallium Phosphide (GaP), 2-{3-(4-hydroxystyryl)-5,5-dimethylcyclohex-2-enylidene}malononitrile (OH1), and 4-N,N-dimethylamino-4'-N'-methyl-stilbazolium 2,4,6-trimethylbenzenesulfonate (DSTMS) crystals pumped by an amplified near-infrared (NIR) laser with tunable wavelength. We found that both OH1 as well as DSTMS could convert NIR laser radiation between 1200 and 2500 nm into THz radiation with high efficiency (> 2 × 10-4), resulting in THz peak fields exceeding 0.1 MV/cm for modest pump excitation (~ mJ/cm2). DSTMS emits the broadest spectrum, covering the entire bandwidth of our detector from ca. 0.5 to ~7 THz, also at a laser wavelength of 2100 nm. Future improvements will require handling the photothermal damage of these delicate organic crystals, and increasing the THz frequency.
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Affiliation(s)
- Fabio Novelli
- Department of Physical Chemistry II, Ruhr University Bochum, 44801 Bochum, Germany;
| | - Biswajit Guchhait
- Department of Physical Chemistry II, Ruhr University Bochum, 44801 Bochum, Germany;
- Department of Chemistry, School of Natural Sciences, Shiv Nadar University, Greater Noida, Uttar Pradesh 201314, India
| | - Martina Havenith
- Department of Physical Chemistry II, Ruhr University Bochum, 44801 Bochum, Germany;
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54
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Pan D, Galli G. A first principles method to determine speciation of carbonates in supercritical water. Nat Commun 2020; 11:421. [PMID: 31964878 PMCID: PMC6972934 DOI: 10.1038/s41467-019-14248-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Accepted: 12/04/2019] [Indexed: 11/20/2022] Open
Abstract
The determination of the speciation of ions and molecules in supercritical aqueous fluids under pressure is critical to understanding their mass transport in the Earth's interior. Unfortunately, there is no experimental technique yet available to directly characterize species dissolved in water at extreme conditions. Here we present a strategy, based on first-principles simulations, to determine ratios of Raman scattering cross-sections of aqueous species under extreme conditions, thus providing a key quantity that can be used, in conjunction with Raman measurements, to predict chemical speciation in aqueous fluids. Due to the importance of the Earth's carbon cycle, we focus on carbonate and bicarbonate ions. Our calculations up to 11 GPa and 1000 K indicate a higher concentration of bicarbonates in water than previously considered at conditions relevant to the Earth's upper mantle, with important implications for the transport of carbon in aqueous fluids in the Earth's interior.
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Affiliation(s)
- Ding Pan
- Department of Physics and Department of Chemistry, Hong Kong University of Science and Technology, Hong Kong, China.
- HKUST Fok Ying Tung Research Institute, Guangzhou, China.
| | - Giulia Galli
- Pritzker School of Molecular Engineering, The University of Chicago, Chicago, IL, 60637, USA
- Department of Chemistry, The University of Chicago, Chicago, IL, 60637, USA
- Materials Science Division and Center for Molecular Engineering, Argonne National Laboratory, Argonne, IL, 60439, USA
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55
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Mochizuki K. Reduction of water-mediated repulsion drives poly(N-vinylcaprolactam) collapse upon heating. Phys Chem Chem Phys 2020; 22:1053-1060. [PMID: 31867584 DOI: 10.1039/c9cp05491j] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Thermo-sensitive aqueous polymers undergo a coil-to-globule transition on heating, with drastic chemical and structural changes. We performed molecular dynamics simulations for PVCL in water to study the driving forces for the polymer's collapse.
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Affiliation(s)
- Kenji Mochizuki
- Department of Chemistry and Materials
- Faculty of Textile Science and Technology
- Shinshu University
- Nagano 386-8567
- Japan
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56
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Litman Y, Behler J, Rossi M. Temperature dependence of the vibrational spectrum of porphycene: a qualitative failure of classical-nuclei molecular dynamics. Faraday Discuss 2020; 221:526-546. [DOI: 10.1039/c9fd00056a] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Approximate quantum dynamics succeed in predicting a temperature-dependent blue-shift of the high-frequency stretch bands that arise from vibrational coupling between low-frequency thermally activated modes and high-frequency quantized ones. Classical nuclei molecular dynamics fail and instead predict a red-shift.
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Affiliation(s)
- Yair Litman
- Fritz Haber Institute of the Max Planck Society
- 14195 Berlin
- Germany
| | - Jörg Behler
- Universität Göttingen
- Institut für Physikalische Chemie, Theoretische Chemie
- 37077 Göttingen
- Germany
| | - Mariana Rossi
- Fritz Haber Institute of the Max Planck Society
- 14195 Berlin
- Germany
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57
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Schran C, Behler J, Marx D. Automated Fitting of Neural Network Potentials at Coupled Cluster Accuracy: Protonated Water Clusters as Testing Ground. J Chem Theory Comput 2019; 16:88-99. [DOI: 10.1021/acs.jctc.9b00805] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Christoph Schran
- Lehrstuhl für Theoretische Chemie, Ruhr−Universität Bochum, 44780 Bochum, Germany
| | - Jörg Behler
- Universität Göttingen, Institut für Physikalische Chemie, Theoretische Chemie, Tammannstrasse 6, 37077 Göttingen, Germany
| | - Dominik Marx
- Lehrstuhl für Theoretische Chemie, Ruhr−Universität Bochum, 44780 Bochum, Germany
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58
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Morawietz T, Urbina AS, Wise PK, Wu X, Lu W, Ben-Amotz D, Markland TE. Hiding in the Crowd: Spectral Signatures of Overcoordinated Hydrogen-Bond Environments. J Phys Chem Lett 2019; 10:6067-6073. [PMID: 31549833 DOI: 10.1021/acs.jpclett.9b01781] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Molecules with an excess number of hydrogen-bonding partners play a crucial role in fundamental chemical processes, ranging from anomalous diffusion in supercooled water to transport of aqueous proton defects and ordering of water around hydrophobic solutes. Here we show that overcoordinated hydrogen-bond environments can be identified in both the ambient and supercooled regimes of liquid water by combining experimental Raman multivariate curve resolution measurements and machine learning accelerated quantum simulations. In particular, we find that OH groups appearing in spectral regions usually associated with non-hydrogen-bonded species actually correspond to hydrogen bonds formed in overcoordinated environments. We further show that only these species exhibit a turnover in population as a function of temperature, which is robust and persists under both constant pressure and density conditions. This work thus provides a new tool to identify, interpret, and elucidate the spectral signatures of crowded hydrogen-bond networks.
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Affiliation(s)
- Tobias Morawietz
- Department of Chemistry , Stanford University , Stanford , California 94305 , United States
| | - Andres S Urbina
- Department of Chemistry , Purdue University , West Lafayette , Indiana 47907 , United States
| | - Patrick K Wise
- Department of Chemistry , Purdue University , West Lafayette , Indiana 47907 , United States
| | - Xiangen Wu
- College of Marine Science and Technology , China University of Geosciences , Wuhan 430074 , China
| | - Wanjun Lu
- College of Marine Science and Technology , China University of Geosciences , Wuhan 430074 , China
| | - Dor Ben-Amotz
- Department of Chemistry , Purdue University , West Lafayette , Indiana 47907 , United States
| | - Thomas E Markland
- Department of Chemistry , Stanford University , Stanford , California 94305 , United States
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59
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Cassone G, Sponer J, Trusso S, Saija F. Ab initio spectroscopy of water under electric fields. Phys Chem Chem Phys 2019; 21:21205-21212. [PMID: 31368466 DOI: 10.1039/c9cp03101d] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Whereas a broad range of literature exists on the spectroscopy of water in disparate conditions, infrared (IR) and Raman spectra of water subjected to electric fields have never extensively been investigated so far. Based on ab initio molecular dynamics simulations, here we present IR and Raman spectra of bulk liquid water under the effect of static electric fields. A contraction of the entire frequency range is recorded upon increasing the field intensity both in the IR and in the Raman spectra. Whilst the OH stretching band is progressively shifted toward lower frequencies - indicating a field-induced strengthening of the H-bond network - all the other bands are up-shifted by the field. Furthermore, an evident modification of the librational mode band appears in all the spectra. Finally, the order-maker action of the field emerges also from the increase of the water orientational tetrahedral order. Upon field exposure, the water structure becomes more "ice like".
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Affiliation(s)
- Giuseppe Cassone
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 61265 Brno, Czech Republic.
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60
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Robalo JR, Streacker LM, Mendes de Oliveira D, Imhof P, Ben-Amotz D, Verde AV. Hydrophobic but Water-Friendly: Favorable Water–Perfluoromethyl Interactions Promote Hydration Shell Defects. J Am Chem Soc 2019; 141:15856-15868. [DOI: 10.1021/jacs.9b06862] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- João R. Robalo
- Department of Theory & Bio-systems, Max Planck Institute for Colloids and Interfaces, Science Park, Potsdam 14476, Germany
| | - Louis M. Streacker
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | | | - Petra Imhof
- Institute for Theoretical Physics, Free University of Berlin, Arnimallee 14, 14195 Berlin, Germany
| | - Dor Ben-Amotz
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Ana Vila Verde
- Department of Theory & Bio-systems, Max Planck Institute for Colloids and Interfaces, Science Park, Potsdam 14476, Germany
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61
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Wexler AD, Fuchs EC, Woisetschläger J, Vitiello G. Electrically induced liquid-liquid phase transition in water at room temperature. Phys Chem Chem Phys 2019; 21:18541-18550. [PMID: 31397450 DOI: 10.1039/c9cp03192h] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
In this work we expand on findings previously reported [Wexler et al., Phys. Chem. Chem. Phys., 2016, 18, 16281] on the experimental observation of a phase transition in a hydrogen bonded liquid manifesting in long range dipole-dipole interactions. The studied system, liquid water stressed by an electric field, exhibits collective oscillations brought about through spontaneous breakdown of symmetry. Raman spectroscopy identifies the primary excitation of the emergent phase as transverse optically active phonon-like sidebands that appear on the hydrogen bonded asymmetric stretch mode. The phase transition is observed throughout the entire volume of liquid. The system also exhibits a self-similarity relation between the scattered Raman intensity and the electric field strength which further supports the conclusion that collective behavior persists against thermal disruption. The experimental findings are discussed in terms of a quantum field theory for macroscopic quantum systems.
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Affiliation(s)
- Adam D Wexler
- Arie Zwijnenburg Laboratory for Advanced Microscopy and Optical Metrology, Wetsus - European Center of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911MA Leeuwarden, The Netherlands.
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62
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Camisasca G, Schlesinger D, Zhovtobriukh I, Pitsevich G, Pettersson LGM. A proposal for the structure of high- and low-density fluctuations in liquid water. J Chem Phys 2019; 151:034508. [PMID: 31325915 DOI: 10.1063/1.5100875] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Based on recent experimental data that can be interpreted as indicating the presence of specific structures in liquid water, we build and optimize two structural models which we compare with the available experimental data. To represent the proposed high-density liquid structures, we use a model consisting of chains of water molecules, and for low-density liquid, we investigate fused dodecahedra as templates for tetrahedral fluctuations. The computed infrared spectra of the models are in very good agreement with the extracted experimental spectra for the two components, while the extracted structures from molecular dynamics (MD) simulations give spectra that are intermediate between the experimentally derived spectra. Computed x-ray absorption and emission spectra as well as the O-O radial distribution functions of the proposed structures are not contradicted by experiment. The stability of the proposed dodecahedral template structures is investigated in MD simulations by seeding the starting structure, and remnants found to persist on an ∼30 ps time scale. We discuss the possible significance of such seeds in simulations and whether they can be viable candidates as templates for structural fluctuations below the compressibility minimum of liquid water.
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Affiliation(s)
- Gaia Camisasca
- Department of Physics, AlbaNova University Center, Stockholm University, S-106 91 Stockholm, Sweden
| | - Daniel Schlesinger
- Department of Environmental Science and Analytical Chemistry & Bolin Centre for Climate Research, Stockholm University, 114 18 Stockholm, Sweden
| | - Iurii Zhovtobriukh
- Department of Physics, AlbaNova University Center, Stockholm University, S-106 91 Stockholm, Sweden
| | - George Pitsevich
- Belarusian State University, Nezavisimosti Ave., 4, 220030 Minsk, Belarus
| | - Lars G M Pettersson
- Department of Physics, AlbaNova University Center, Stockholm University, S-106 91 Stockholm, Sweden
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63
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Novelli F, Bernal Lopez M, Schwaab G, Roldan Cuenya B, Havenith M. Water Solvation of Charged and Neutral Gold Nanoparticles. J Phys Chem B 2019; 123:6521-6528. [DOI: 10.1021/acs.jpcb.9b02358] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | | | - Beatriz Roldan Cuenya
- Department of Interface Science, Fritz-Haber Institute of the Max Planck Society, Berlin 14195, Germany
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64
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Abstract
Hydration-shell vibrational spectroscopy provides an experimental window into solute-induced water structure changes that mediate aqueous folding, binding, and self-assembly. Decomposition of measured Raman and infrared (IR) spectra of aqueous solutions using multivariate curve resolution (MCR) and related methods may be used to obtain solute-correlated spectra revealing solute-induced perturbations of water structure, such as changes in water hydrogen-bond strength, tetrahedral order, and the presence of dangling (non-hydrogen-bonded) OH groups. More generally, vibrational-MCR may be applied to both aqueous and nonaqueous solutions, including multicomponent mixtures, to quantify solvent-mediated interactions between oily, polar, and ionic solutes, in both dilute and crowded fluids. Combining vibrational-MCR with emerging theoretical modeling strategies promises synergetic advances in the predictive understanding of multiscale self-assembly processes of both biological and technological interest.
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Affiliation(s)
- Dor Ben-Amotz
- Department of Chemistry , Purdue University , West Lafayette , Indiana 47907 , United States
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65
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Korepanov VI, Hamaguchi HO. Ordered Structures in Liquid Water as Studied by Raman Spectroscopy and the Phonon Confinement Model. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2019. [DOI: 10.1246/bcsj.20190044] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Vitaly I. Korepanov
- Institute of Microelectronics Technology and High Purity Materials RAS, 6, Ac. Ossipyan str., Chernogolovka, 142432, Russia
- Department of Applied Chemistry and Institute of Molecular Science, College of Science, National Chiao-Tung University, 1001 University Road, Hsinchu 300, Taiwan
| | - Hiro-o Hamaguchi
- Department of Applied Chemistry and Institute of Molecular Science, College of Science, National Chiao-Tung University, 1001 University Road, Hsinchu 300, Taiwan
- Spectroscopic Science Laboratory Co., 3-22-9 Ozenji-higashi, Kawasaki, Kanagawa 215-0018, Japan
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66
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Camisasca G, Galamba N, Wikfeldt KT, Pettersson LGM. Translational and rotational dynamics of high and low density TIP4P/2005 water. J Chem Phys 2019; 150:224507. [PMID: 31202216 DOI: 10.1063/1.5079956] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We use molecular dynamics simulations using TIP4P/2005 to investigate the self- and distinct-van Hove functions for different local environments of water, classified using the local structure index as an order parameter. The orientational dynamics were studied through the calculation of the time-correlation functions of different-order Legendre polynomials in the OH-bond unit vector. We found that the translational and orientational dynamics are slower for molecules in a low-density local environment and correspondingly the mobility is enhanced upon increasing the local density, consistent with some previous works, but opposite to a recent study on the van Hove function. From the analysis of the distinct dynamics, we find that the second and fourth peaks of the radial distribution function, previously identified as low density-like arrangements, show long persistence in time. The analysis of the time-dependent interparticle distance between the central molecule and the first coordination shell shows that particle identity persists longer than distinct van Hove correlations. The motion of two first-nearest-neighbor molecules thus remains coupled even when this correlation function has been completely decayed. With respect to the orientational dynamics, we show that correlation functions of molecules in a low-density environment decay exponentially, while molecules in a local high-density environment exhibit bi-exponential decay, indicating that dynamic heterogeneity of water is associated with the heterogeneity among high-density and between high-density and low-density species. This bi-exponential behavior is associated with the existence of interstitial waters and the collapse of the second coordination sphere in high-density arrangements, but not with H-bond strength.
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Affiliation(s)
- Gaia Camisasca
- Department of Physics, Stockholm University, 106 91 Stockholm, Sweden
| | - Nuno Galamba
- Centre of Chemistry and Biochemistry and Biosystems and Integrative Sciences Institute, Faculty of Sciences of the University of Lisbon, C8, Campo Grande, 1749-016 Lisbon, Portugal
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67
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Kananenka AA, Hestand NJ, Skinner JL. OH-Stretch Raman Multivariate Curve Resolution Spectroscopy of HOD/H2O Mixtures. J Phys Chem B 2019; 123:5139-5146. [DOI: 10.1021/acs.jpcb.9b02686] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alexei A. Kananenka
- Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, United States
| | - Nicholas J. Hestand
- Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, United States
| | - J. L. Skinner
- Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, United States
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68
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Baer A, Miličević Z, Smith DM, Smith AS. Water in an electric field does not dance alone: The relation between equilibrium structure, time dependent viscosity and molecular motions. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.02.055] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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69
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Klima TC, Braeuer AS. Raman Thermometry in Water, Ethanol, and Ethanol/Nitrogen Mixtures from Ambient to Critical Conditions. Anal Chem 2019; 91:1043-1048. [PMID: 30508380 PMCID: PMC7006964 DOI: 10.1021/acs.analchem.8b04382] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
We
present investigations into remote liquid temperature sensing
with Raman spectroscopy using different evaluation methods for the
OH stretching vibration band. Water, ethanol, and ethanol saturated
with nitrogen, all as liquids or liquid-like supercritical fluids,
are pumped through a heated microcapillary system at elevated pressures.
Raman spectra are recorded from the liquid inside the microcapillary
and are evaluated with respect to the temperature sensitivity of the
OH stretching vibration. The four approaches applied are (i) to evaluate
the center position of the Raman OH-band, (ii) the integrated absolute
difference spectrum, (iii) the intensity ratio of two regions of the
OH-band, and (iv) the intensity ratio of two fitted Gaussian peaks.
The temperature range investigated covers from ambient temperature
to the component’s respective boiling temperature or critical
temperature at sub- and supercritical pressures. Precision and robustness
of the employed methods are characterized. It is shown that two out
of the four methods feature temperature deviations smaller than 5
K at all pressures and that one method can also be applied to liquid
mixtures of ethanol and nitrogen. Applicability to other liquids and
mixtures is discussed.
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Affiliation(s)
- Tobias C Klima
- Institute of Thermal-, Environmental-, and Resources' Process Engineering (ITUN) , Technische Universität Bergakademie Freiberg (TUBAF) , 09599 Freiberg , Germany
| | - Andreas S Braeuer
- Institute of Thermal-, Environmental-, and Resources' Process Engineering (ITUN) , Technische Universität Bergakademie Freiberg (TUBAF) , 09599 Freiberg , Germany
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70
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Ohto T, Dodia M, Imoto S, Nagata Y. Structure and Dynamics of Water at the Water–Air Interface Using First-Principles Molecular Dynamics Simulations within Generalized Gradient Approximation. J Chem Theory Comput 2018; 15:595-602. [DOI: 10.1021/acs.jctc.8b00567] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tatsuhiko Ohto
- Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Mayank Dodia
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Sho Imoto
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
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71
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Hellström M, Ceriotti M, Behler J. Nuclear Quantum Effects in Sodium Hydroxide Solutions from Neural Network Molecular Dynamics Simulations. J Phys Chem B 2018; 122:10158-10171. [DOI: 10.1021/acs.jpcb.8b06433] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Matti Hellström
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany
- Universität Göttingen, Institut für Physikalische Chemie, Theoretische Chemie, Tammannstr. 6, 37077 Göttingen, Germany
| | - Michele Ceriotti
- Laboratory of Computational Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Jörg Behler
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany
- Universität Göttingen, Institut für Physikalische Chemie, Theoretische Chemie, Tammannstr. 6, 37077 Göttingen, Germany
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72
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Steen GW, Wexler AD, Fuchs EC, Bakker HA, Nguyen PD, Offerhaus HL. Role of temperature in de-mixing absorbance spectra composed of compound electrolyte solutions. APPLIED OPTICS 2018; 57:7871-7877. [PMID: 30462053 DOI: 10.1364/ao.57.007871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2018] [Accepted: 08/15/2018] [Indexed: 06/09/2023]
Abstract
This work is focused on the role of temperature in the de-mixing of absorbance spectra measured in mixed aqueous Na2SO4 and NaNO3 solutions. First, the influence of temperature on the absorbance spectrum of demineralized water was determined. Second, the absorbance spectra of five separate electrolytes (NaNO2, NaNO3, CaCl2, K2CO3, and NaOH) at three temperatures (4°C, 25°C, and 50°C) for concentrations ranging from 0.0625 M to 0.5 M were examined. These five electrolytes show similar temperature dependencies. Finally, absorbance spectra of mixed solutions were investigated at temperatures of 5°C, 15°C, 25°C, 35°C, and 45°C for concentrations ranging from 0.0625 M to 0.5 M per electrolyte in the mixture. The spectral window from 650 to 1100 nm was utilized to observe the ionic and temperature influences on the vibrational modes of the OH bond in the solvent molecules. The effects of dissolving Na2SO4 and NaNO3 are nonlinearly cumulative at lower temperatures indicating extended alteration of the water structure beyond the first hydration shell. A similar trend was observed for a mixture of Na2CO3 and NaCl. Furthermore, it was found that higher temperatures are better for recovering the separate component absorption signatures of an electrolyte mixture. The near-infrared spectral regime is well suited for integrated sensing, and therefore these results can help in designing an integrated sensor to identify inorganic species in water.
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Wellig S, Hamm P. Solvation Layer of Antifreeze Proteins Analyzed with a Markov State Model. J Phys Chem B 2018; 122:11014-11022. [PMID: 29889528 DOI: 10.1021/acs.jpcb.8b04491] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Three structurally very different antifreeze proteins (AFPs) are studied, addressing the question as to what extent the hypothesized preordering-binding mechanism is still relevant in the second solvation layer of the protein and beyond. Assuming a two-state model of water, the solvation layers are analyzed with the help of molecular dynamics simulations together with a Markov state model, which investigates the local tedrahedrality of the water hydrogen-bond network around a given water molecule. It has been shown previously that this analysis can discriminate the high-entropy, high-density state of the liquid (HDL) from its more structured low-density state (LDL). All investigated proteins, regardless of whether they are an AFP or not, have a tendency to increase the amount of HDL in their second solvation layer. The ice binding site (IBS) of the antifreeze proteins counteracts that trend, with either a hole in the HDL layer or a true excess of LDL. The results correlate to a certain extent with recent experiments, which have observed ice-like vibrational (VSFG) spectra for the water atop the IBS of only a subset of antifreeze proteins. It is concluded that the preordering-binding mechanism indeed seems to play a role but is only part of the overall picture.
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Affiliation(s)
- Sebastian Wellig
- Department of Chemistry , University of Zurich , 8057 Zurich , Switzerland
| | - Peter Hamm
- Department of Chemistry , University of Zurich , 8057 Zurich , Switzerland
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Napoli JA, Marsalek O, Markland TE. Decoding the spectroscopic features and time scales of aqueous proton defects. J Chem Phys 2018; 148:222833. [PMID: 29907063 DOI: 10.1063/1.5023704] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Acid solutions exhibit a variety of complex structural and dynamical features arising from the presence of multiple interacting reactive proton defects and counterions. However, disentangling the transient structural motifs of proton defects in the water hydrogen bond network and the mechanisms for their interconversion remains a formidable challenge. Here, we use simulations treating the quantum nature of both the electrons and nuclei to show how the experimentally observed spectroscopic features and relaxation time scales can be elucidated using a physically transparent coordinate that encodes the overall asymmetry of the solvation environment of the proton defect. We demonstrate that this coordinate can be used both to discriminate the extremities of the features observed in the linear vibrational spectrum and to explain the molecular motions that give rise to the interconversion time scales observed in recent nonlinear experiments. This analysis provides a unified condensed-phase picture of the proton structure and dynamics that, at its extrema, encompasses proton sharing and spectroscopic features resembling the limiting Eigen [H3O(H2O)3]+ and Zundel [H(H2O)2]+ gas-phase structures, while also describing the rich variety of interconverting environments in the liquid phase.
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Affiliation(s)
- Joseph A Napoli
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Ondrej Marsalek
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Thomas E Markland
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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