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Trieu-Tran T, Martinez SN, Brannon JP, Stieber SCE, John A. Crystal structures of two dioxomolybdenum complexes stabilized by salan ligands featuring phenyl and cyclo-hexyl backbones. Acta Crystallogr E Crystallogr Commun 2022; 78:244-250. [PMID: 35371549 PMCID: PMC8900517 DOI: 10.1107/s2056989022000524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Accepted: 01/13/2022] [Indexed: 11/10/2022]
Abstract
Two cis-dioxomolybdenum complexes based on salan ligands with different backbones are reported. The first complex, dioxido{2,2'-[l,2-phenyl-enebis(imino-methyl-ene)]bis-(phenolato)}molybdenum(VI) di-methyl-formamide disolvate, [Mo(C20H18N2O2)O2]·2C3H7NO (PhLMoO2, 1b), features a phenyl backbone, while the second complex, (6,6'-{[(cyclo-hexane-1,2-di-yl)bis(aza-nedi-yl)]bis-(methyl-ene)}bis-(2,4-di-tert-butyl-phenolato))dioxidomolybdenum(VI) methanol disolvate, [Mo(C36H56N2O2)O2]·2CH3OH (CyLMoO2, 2b), is based on a cyclo-hexyl backbone. These complexes crystallized as solvated species, 1b·2DMF and 2b·2MeOH. The salan ligands PhLH2 (1a) and CyLH2 (2a) coordinate to the molybdenum center in these complexes 1b and 2b in a κ2 N,κ2 O fashion, forming a distorted octa-hedral geometry. The Mo-N and Mo-O distances are 2.3475 (16) and 1.9567 (16) Å, respectively, in 1b while the corresponding measurements are Mo-N = 2.3412 (12) Å, and Mo-O = 1.9428 (10) Å for 2b. A key geometrical feature is that the N-Mo-N angle of 72.40 (4)° in CyLMoO2 is slightly less than that of the PhLMoO2 angle of 75.18 (6)°, which is attributed to the flexibility of the cyclo-hexane ring between the nitro-gen as compared to the rigid phenyl ring in the PhLMoO2.
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Affiliation(s)
- Tristhan Trieu-Tran
- Chemistry & Biochemistry Department, California State Polytechnic University, Pomona, 3801 W. Temple Ave., Pomona, CA 91768, USA
| | - Stephenie N. Martinez
- Chemistry & Biochemistry Department, California State Polytechnic University, Pomona, 3801 W. Temple Ave., Pomona, CA 91768, USA
| | - Jacob P. Brannon
- Chemistry & Biochemistry Department, California State Polytechnic University, Pomona, 3801 W. Temple Ave., Pomona, CA 91768, USA
| | - S. Chantal E. Stieber
- Chemistry & Biochemistry Department, California State Polytechnic University, Pomona, 3801 W. Temple Ave., Pomona, CA 91768, USA
| | - Alex John
- Chemistry & Biochemistry Department, California State Polytechnic University, Pomona, 3801 W. Temple Ave., Pomona, CA 91768, USA
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52
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Paul N, Sarkar R, Sarkar S. Iron and Zinc Porphyrin Linked MoO(dithiolene) Complexes in Relevance to Electron Transfer between Mo-cofactor and Cytochrome b5 in Sulfite Oxidase. Dalton Trans 2022; 51:12447-12452. [DOI: 10.1039/d2dt01863b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Oxo-molybdenum (dithiolene) complex covalently linked individually to iron and zinc porphyrin have been synthesized to show an electron transfer between the two metal centres in relevance to electron transfer from...
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53
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Liu M, Nazemi A, Taylor MG, Nandy A, Duan C, Steeves AH, Kulik HJ. Large-Scale Screening Reveals That Geometric Structure Matters More Than Electronic Structure in the Bioinspired Catalyst Design of Formate Dehydrogenase Mimics. ACS Catal 2021. [DOI: 10.1021/acscatal.1c04624] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Mingjie Liu
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Azadeh Nazemi
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Michael G. Taylor
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Aditya Nandy
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Chenru Duan
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Adam H. Steeves
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Heather J. Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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54
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Maiti BK, Maia LB, Moura JJG. Sulfide and transition metals - A partnership for life. J Inorg Biochem 2021; 227:111687. [PMID: 34953313 DOI: 10.1016/j.jinorgbio.2021.111687] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 11/24/2021] [Accepted: 11/28/2021] [Indexed: 12/13/2022]
Abstract
Sulfide and transition metals often came together in Biology. The variety of possible structural combinations enabled living organisms to evolve an array of highly versatile metal-sulfide centers to fulfill different physiological roles. The ubiquitous iron‑sulfur centers, with their structural, redox, and functional diversity, are certainly the best-known partners, but other metal-sulfide centers, involving copper, nickel, molybdenum or tungsten, are equally crucial for Life. This review provides a concise overview of the exclusive sulfide properties as a metal ligand, with emphasis on the structural aspects and biosynthesis. Sulfide as catalyst and as a substrate is discussed. Different enzymes are considered, including xanthine oxidase, formate dehydrogenases, nitrogenases and carbon monoxide dehydrogenases. The sulfide effect on the activity and function of iron‑sulfur, heme and zinc proteins is also addressed.
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Affiliation(s)
- Biplab K Maiti
- National Institute of Technology Sikkim, Department of Chemistry, Ravangla Campus, Barfung Block, Ravangla Sub Division, South Sikkim 737139, India.
| | - Luisa B Maia
- LAQV, REQUIMTE, Department of Chemistry, NOVA School of Science and Technology (FCT NOVA), Universidade NOVA de Lisboa, Campus de Caparica, Portugal.
| | - José J G Moura
- LAQV, REQUIMTE, Department of Chemistry, NOVA School of Science and Technology (FCT NOVA), Universidade NOVA de Lisboa, Campus de Caparica, Portugal.
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55
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Elvers BJ, Krewald V, Schulzke C, Fischer C. Reduction induced S-nucleophilicity in mono-dithiolene molybdenum complexes - in situ generation of sulfonium ligands. Chem Commun (Camb) 2021; 57:12615-12618. [PMID: 34755726 DOI: 10.1039/d1cc05335c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The reduction of a molybdenum monodithiolene complex, [Mo(CO)2(dt)(dppe)], in the presence of dichloromethane leads to the transfer of CH2 to sulfur and respective sulfonium species. Detailed analytical and mechanistical spectroscopic and electrochemical studies reveal the reasons for the unexpected formation and composition of the very unusual resultant complexes to be electronic-energetic in nature.
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Affiliation(s)
- Benedict J Elvers
- Universität Greifswald, Institut für Biochemie, Felix-Hausdorff-Str. 4, Greifswald, Germany.
| | - Vera Krewald
- Technische Universität Darmstadt, Fachbereich Chemie, Theoretische Chemie, Alarich-Weiss-Str. 4, 64287 Darmstadt, Germany.
| | - Carola Schulzke
- Universität Greifswald, Institut für Biochemie, Felix-Hausdorff-Str. 4, Greifswald, Germany.
| | - Christian Fischer
- Universität Greifswald, Institut für Biochemie, Felix-Hausdorff-Str. 4, Greifswald, Germany.
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56
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Association of Mutations Identified in Xanthinuria with the Function and Inhibition Mechanism of Xanthine Oxidoreductase. Biomedicines 2021; 9:biomedicines9111723. [PMID: 34829959 PMCID: PMC8615798 DOI: 10.3390/biomedicines9111723] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 11/16/2021] [Accepted: 11/16/2021] [Indexed: 01/07/2023] Open
Abstract
Xanthine oxidoreductase (XOR) is an enzyme that catalyzes the two-step reaction from hypoxanthine to xanthine and from xanthine to uric acid in purine metabolism. XOR generally carries dehydrogenase activity (XDH) but is converted into an oxidase (XO) under various pathophysiologic conditions. The complex structure and enzymatic function of XOR have been well investigated by mutagenesis studies of mammalian XOR and structural analysis of XOR-inhibitor interactions. Three XOR inhibitors are currently used as hyperuricemia and gout therapeutics but are also expected to have potential effects other than uric acid reduction, such as suppressing XO-generating reactive oxygen species. Isolated XOR deficiency, xanthinuria type I, is a good model of the metabolic effects of XOR inhibitors. It is characterized by hypouricemia, markedly decreased uric acid excretion, and increased serum and urinary xanthine concentrations, with no clinically significant symptoms. The pathogenesis and relationship between mutations and XOR activity in xanthinuria are useful for elucidating the biological role of XOR and the details of the XOR reaction process. In this review, we aim to contribute to the basic science and clinical aspects of XOR by linking the mutations in xanthinuria to structural studies, in order to understand the function and reaction mechanism of XOR in vivo.
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EĞLENCE BAKIR S. Dioxomolybdenum(VI) complexes of ONN chelating thiosemicarbazones: Crystallographic and spectroscopic (UV, IR and NMR) studies. JOURNAL OF THE TURKISH CHEMICAL SOCIETY, SECTION A: CHEMISTRY 2021. [DOI: 10.18596/jotcsa.989318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
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58
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Al-Attar S, Rendon J, Sidore M, Duneau JP, Seduk F, Biaso F, Grimaldi S, Guigliarelli B, Magalon A. Gating of Substrate Access and Long-Range Proton Transfer in Escherichia coli Nitrate Reductase A: The Essential Role of a Remote Glutamate Residue. ACS Catal 2021. [DOI: 10.1021/acscatal.1c03988] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Sinan Al-Attar
- Laboratoire de Chimie Bactérienne (UMR7283), IMM, IM2B, Aix Marseille Université, CNRS, 13402 Marseille, France
| | - Julia Rendon
- Laboratoire de Bioénergétique et Ingénierie des Protéines (UMR7281), IMM, IM2B, Aix Marseille Université, CNRS, 13402 Marseille, France
| | - Marlon Sidore
- Laboratoire d’Ingénierie des Systèmes Macromoléculaires (UMR7255), IMM, IM2B, Aix Marseille Université, CNRS, 13402 Marseille, France
| | - Jean-Pierre Duneau
- Laboratoire d’Ingénierie des Systèmes Macromoléculaires (UMR7255), IMM, IM2B, Aix Marseille Université, CNRS, 13402 Marseille, France
| | - Farida Seduk
- Laboratoire de Chimie Bactérienne (UMR7283), IMM, IM2B, Aix Marseille Université, CNRS, 13402 Marseille, France
| | - Frédéric Biaso
- Laboratoire de Bioénergétique et Ingénierie des Protéines (UMR7281), IMM, IM2B, Aix Marseille Université, CNRS, 13402 Marseille, France
| | - Stéphane Grimaldi
- Laboratoire de Bioénergétique et Ingénierie des Protéines (UMR7281), IMM, IM2B, Aix Marseille Université, CNRS, 13402 Marseille, France
| | - Bruno Guigliarelli
- Laboratoire de Bioénergétique et Ingénierie des Protéines (UMR7281), IMM, IM2B, Aix Marseille Université, CNRS, 13402 Marseille, France
| | - Axel Magalon
- Laboratoire de Chimie Bactérienne (UMR7283), IMM, IM2B, Aix Marseille Université, CNRS, 13402 Marseille, France
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59
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Experimental and theoretical studies of new dioxomolybdenum complex: Synthesis, characterization and application as an efficient homogeneous catalyst for the selective sulfoxidation. Inorganica Chim Acta 2021. [DOI: 10.1016/j.ica.2021.120568] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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60
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Dioxomolybdenum(VI) complexes with 4-benzyloxysalicylidene-N/S-alkyl thiosemicarbazones: Synthesis, structural analysis, antioxidant activity and xanthine oxidase inhibition. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115467] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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61
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Wang X, Wang Y, Li X, Yu Z, Song C, Du Y. Nitrile-containing pharmaceuticals: target, mechanism of action, and their SAR studies. RSC Med Chem 2021; 12:1650-1671. [PMID: 34778767 PMCID: PMC8528211 DOI: 10.1039/d1md00131k] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2021] [Accepted: 06/27/2021] [Indexed: 12/12/2022] Open
Abstract
The nitrile group is an important functional group widely found in both pharmaceutical agents and natural products. More than 30 nitrile-containing pharmaceuticals have been approved by the FDA for the management of a broad range of clinical conditions in the last few decades. Incorporation of a nitrile group into lead compounds has gradually become a promising strategy in rational drug design as it can bring additional benefits including enhanced binding affinity to the target, improved pharmacokinetic profile of parent drugs, and reduced drug resistance. This paper reviews the existing drugs with a nitrile moiety that have been approved or in clinical trials, involving their targets, molecular mechanism of pharmacology and SAR studies, and classifies them into different categories based on their clinical usages.
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Affiliation(s)
- Xi Wang
- School of Pharmaceutical Science and Technology, Tianjin University Tianjin 300072 China
| | - Yuanxun Wang
- National Institution of Biological Sciences, Beijing No. 7 Science Park Road, Zhongguancun Life Science Park Beijing 102206 China
| | - Xuemin Li
- School of Pharmaceutical Science and Technology, Tianjin University Tianjin 300072 China
| | - Zhenyang Yu
- School of Pharmaceutical Science and Technology, Tianjin University Tianjin 300072 China
| | - Chun Song
- State Key Laboratory of Microbial Technology, Shandong University Qingdao City Shandong Province 266237 China
| | - Yunfei Du
- School of Pharmaceutical Science and Technology, Tianjin University Tianjin 300072 China
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62
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Bykowski J, Turnbull D, Hahn N, Boeré RT, Wetmore SD, Gerken M. Lewis Acid Behavior of MoF 5 and MoOF 4: Syntheses and Characterization of MoF 5(NCCH 3), MoF 5(NC 5H 5) n, and MoOF 4(NC 5H 5) n ( n = 1, 2). Inorg Chem 2021; 60:15695-15711. [PMID: 34609865 DOI: 10.1021/acs.inorgchem.1c02380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The Lewis acid-base adducts MoF5(NC5H5)n and MoOF4(NC5H5)n (n = 1, 2) were synthesized from the reactions of MoF5 and MoOF4 with C5H5N and structurally characterized by X-ray crystallography. Whereas the crystal structures of MoF5(NC5H5)2 and MoOF4(NC5H5)2 are isomorphous containing pentagonal-bipyramidal molecules, the fluorido-bridged, heptacoordinate [MoF5(NC5H5)]2 dimer differs starkly from monomeric, hexacoordinate MoOF4(NC5H5). For the weaker Lewis base CH3CN, only the 1:1 adduct, MoF5(NCCH3), could be isolated. All adducts were characterized by Raman spectroscopy in conjunction with vibrational frequency calculations. Multinuclear NMR spectroscopy revealed an unprecedented isomerism of MoOF4(NC5H5)2 in solution, with the pyridyl ligands occupying adjacent or nonadjacent positions in the equatorial plane of the pentagonal bipyramid. Paramagnetic MoF5(NC5H5)2 was characterized by electron paramagnetic resonance (EPR) spectroscopy as a dispersion in solid adamantane as well as in a diamagnetic host lattice of MoOF4(NC5H5)2; EPR parameters were computed using ZORA with the BPW91 functional using relativistic all-electron wave functions for Mo and simulated using EasySpin. Density functional theory calculations (B3LYP) and natural bond orbital analyses were conducted to elucidate the distinctive bonding and structural properties of all adducts reported herein and explore fundamental differences observed in the Lewis acid behavior of MoF5 and MoOF4.
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Affiliation(s)
- Janelle Bykowski
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4Canada
| | - Douglas Turnbull
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4Canada
| | - Nolan Hahn
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4Canada
| | - René T Boeré
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4Canada
| | - Stacey D Wetmore
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4Canada
| | - Michael Gerken
- Canadian Centre for Research in Advanced Fluorine Technologies and Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive West, Lethbridge, Alberta T1K 3M4Canada
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63
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Non-cytochrome P450 enzymes involved in the oxidative metabolism of xenobiotics: Focus on the regulation of gene expression and enzyme activity. Pharmacol Ther 2021; 233:108020. [PMID: 34637840 DOI: 10.1016/j.pharmthera.2021.108020] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 09/25/2021] [Accepted: 10/04/2021] [Indexed: 12/16/2022]
Abstract
Oxidative metabolism is one of the major biotransformation reactions that regulates the exposure of xenobiotics and their metabolites in the circulatory system and local tissues and organs, and influences their efficacy and toxicity. Although cytochrome (CY)P450s play critical roles in the oxidative reaction, extensive CYP450-independent oxidative metabolism also occurs in some xenobiotics, such as aldehyde oxidase, xanthine oxidoreductase, flavin-containing monooxygenase, monoamine oxidase, alcohol dehydrogenase, or aldehyde dehydrogenase-dependent oxidative metabolism. Drugs form a large portion of xenobiotics and are the primary target of this review. The common reaction mechanisms and roles of non-CYP450 enzymes in metabolism, factors affecting the expression and activity of non-CYP450 enzymes in terms of inhibition, induction, regulation, and species differences in pharmaceutical research and development have been summarized. These non-CYP450 enzymes are detoxifying enzymes, although sometimes they mediate severe toxicity. Synthetic or natural chemicals serve as inhibitors for these non-CYP450 enzymes. However, pharmacokinetic-based drug interactions through these inhibitors have rarely been reported in vivo. Although multiple mechanisms participate in the basal expression and regulation of non-CYP450 enzymes, only a limited number of inducers upregulate their expression. Therefore, these enzymes are considered non-inducible or less inducible. Overall, this review focuses on the potential xenobiotic factors that contribute to variations in gene expression levels and the activities of non-CYP450 enzymes.
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64
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Liu W, Fan Y, He P, Chen H. Complete genome sequence of a nitrate reducing bacteria, Algoriphagus sp. Y33 isolated from the water of the Indian Ocean. Mar Genomics 2021; 59:100861. [PMID: 34493387 DOI: 10.1016/j.margen.2021.100861] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Revised: 02/22/2021] [Accepted: 02/22/2021] [Indexed: 10/22/2022]
Abstract
Algoriphagus sp. Y33, is a nitrate-reducing bacterium isolated from the water of Indian Ocean. Here, we present the complete genome sequence of strain Y33. The genome has one circular chromosome of 6,378,979 bp, with an average GC content of 41.86%, and 5757 coding sequences. According to the annotation analysis, strain Y33 encodes 32 proteins related to nitrogen metabolism. To our knowledge, this is the first report of Algoriphagus sp. isolated from the Indian Ocean with the capacity of nitrate reduction, which will provide insights into regulatory mechanisms of nitrate uptake by heterotrophic bacteria and the global nitrogen cycling.
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Affiliation(s)
- Wenfeng Liu
- Key Laboratory of Science and Technology for Marine Ecology and Environment, First Institute of Oceanography, Ministry of Natural Resources, 6 Xianxialing Road, Qingdao 266061, China; Laboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology (Qingdao), China
| | - Yaqin Fan
- Shandong Provincial Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao 266109, China
| | - Peiqing He
- Key Laboratory of Science and Technology for Marine Ecology and Environment, First Institute of Oceanography, Ministry of Natural Resources, 6 Xianxialing Road, Qingdao 266061, China; Laboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology (Qingdao), China.
| | - Hao Chen
- Key Laboratory of Science and Technology for Marine Ecology and Environment, First Institute of Oceanography, Ministry of Natural Resources, 6 Xianxialing Road, Qingdao 266061, China; Laboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology (Qingdao), China.
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65
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Oxygen atom transfer catalysis by dioxidomolybdenum(VI) complexes of pyridyl aminophenolate ligands. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115234] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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66
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Lanuza J, Sánchez González Á, Bandeira NAG, Lopez X, Gil A. Mechanistic Insights into Promoted Hydrolysis of Phosphoester Bonds by MoO 2Cl 2(DMF) 2. Inorg Chem 2021; 60:11177-11191. [PMID: 34270231 DOI: 10.1021/acs.inorgchem.1c01088] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A phosphoester bond is a crucial structural block in biological systems, whose occurrence is regulated by phosphatases. Molybdenum compounds have been reported to be active in phosphate ester hydrolysis of model phosphates. Specifically, MoO2Cl2(DMF)2 is active in the hydrolysis of para-nitrophenyl phosphate (pNPP), leading to heteropolyoxometalate structures. We use density functional theory (DFT) to clarify the mechanism by which these species promote the hydrolysis of the phosphoester bond. The present calculations give insight into several key aspects of this reaction: (i) the speciation of this complex prior to interaction with the phosphate (DMF release, Mo-Cl hydrolysis, and pH influence on the speciation), (ii) the competition between phosphate addition and the molybdate nucleation process, (iii) and the mechanisms by which some plausible active species promote this hydrolysis in different conditions. We described thoroughly two different pathways depending on the nucleation possibilities of the molybdenum complex: one mononuclear mechanism, which is preferred in conditions in which very low complex concentrations are used, and another dinuclear mechanism, which is preferred at higher concentrations.
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Affiliation(s)
- Jose Lanuza
- Polimero eta Material Aurreratuak, Kimika eta Teknologia Saila, Kimika Fakultatea, Euskal Herriko Unibertsitatea (UPV/EHU), Paseo Manuel de Lardizabal 3, 20018 Donostia-San Sebastián, Spain.,Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 4, 20018 Donostia-San Sebastián, Spain
| | - Ángel Sánchez González
- BioISI-Biosystems and Integrative Sciences Institute-Universidade de Lisboa, Faculdade de Ciências, Universidade de Lisboa, Campo Grande 1749-016, Lisboa, Portugal
| | - Nuno A G Bandeira
- BioISI-Biosystems and Integrative Sciences Institute-Universidade de Lisboa, Faculdade de Ciências, Universidade de Lisboa, Campo Grande 1749-016, Lisboa, Portugal
| | - Xabier Lopez
- Polimero eta Material Aurreratuak, Kimika eta Teknologia Saila, Kimika Fakultatea, Euskal Herriko Unibertsitatea (UPV/EHU), Paseo Manuel de Lardizabal 3, 20018 Donostia-San Sebastián, Spain.,Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 4, 20018 Donostia-San Sebastián, Spain
| | - Adrià Gil
- BioISI-Biosystems and Integrative Sciences Institute-Universidade de Lisboa, Faculdade de Ciências, Universidade de Lisboa, Campo Grande 1749-016, Lisboa, Portugal.,CIC nanoGUNE BRTA, Tolosa Hiribidea 76, E-20018 Donostia-San Sebastián, Euskadi, Spain
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67
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Photo-epoxidation of (α, β)-pinene with molecular O2 catalyzed by a dioxo-molybdenum (VI)-based Metal–Organic Framework. RESEARCH ON CHEMICAL INTERMEDIATES 2021. [DOI: 10.1007/s11164-021-04518-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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68
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Mir MA. Structural and activity changes of xanthine oxidase induced by cetyltrimethylammonium bromide and its Gemini homologue bis(cetyldimethylammonium)hexane dibromide: a comparative study. J DISPER SCI TECHNOL 2021. [DOI: 10.1080/01932691.2021.1931288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Mohammad Amin Mir
- Department of Chemistry, Government Degree College Pulwama, Higher Education Department, Pulwama, Jammu and Kashmir, India
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69
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Nayak M, Joshi DK, Kumar K, Singh AS, Tiwari VK, Bhattacharya S. Synthesis of a Series of a Few Hydrosulfide Complexes of Cu(I). A μ 3-SH-Bridged Rare Cubane-like Tetramer Showing Efficient Catalytic Activity toward Azide-Alkyne Cycloaddition. Inorg Chem 2021; 60:8075-8084. [PMID: 34018726 DOI: 10.1021/acs.inorgchem.1c00628] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A cubane-like tetranuclear hydrosulfido complex of Cu(I), [Cu4(SH)4(PPh3)4] (1), has been synthesized by the reaction of Cu(NO3)2·3H2O, NaSCOPh, and Cu(PPh3)2NO3 and characterized structurally. Complex 1 represents the first example of crystallographically characterized μ3-SH-bridged cubanoid hydrosulfide. By direct reactions of [(PPh3)2Cu(NO3)] and NaSH, neutral hydrosulfide complexes [Cu(SH)(PPh3)2]·C6H6 (2), [Cu2(SH)2(PPh3)3] (3), and [Cu2(SH)2(PPh3)4] (4) have also been synthesized and structurally characterized. Complex 2 is monomeric with a terminal hydrosulfide ligand. The other two, 3 and 4, are μ2-SH-bridged unsymmetrical and symmetrical dinuclear complexes, respectively. In the symmetric one (4), both Cu(I) ions are tetrahedrally coordinated while in the unsymmetric one (3), one Cu(I) ion is tetrahedral and the other one has a trigonal-planar coordination geometry. The catalytic activity of a hydrosulfido complex in a "click" azide-alkyne cycloaddition reaction has been explored for the first time, and complex 1 is found to be an efficient catalyst for the regioselective synthesis of glycoconjugate triazoles.
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Affiliation(s)
- Mousumi Nayak
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Deepak K Joshi
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Krishna Kumar
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Anoop S Singh
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Vinod K Tiwari
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Subrato Bhattacharya
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
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70
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Roy M, Biswal D, Pramanik NR, Drew MG, Paul S, Kachhap P, Haldar C, Chakrabarti S. Structural elucidation, DFT calculations and catalytic activity of dioxomolybdenum(VI) complexes with N N donor ligand: Role of halogen atom coordinated to the molybdenum centre. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115144] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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71
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Dille SA, Colston KJ, Mogesa B, Cassell J, Perera E, Zeller M, Basu P. The Impact of Ligand Oxidation State and Fold Angle on the Charge Transfer Processes of Mo
IV
O‐Dithione Complexes. Eur J Inorg Chem 2021. [DOI: 10.1002/ejic.202001155] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Sara A. Dille
- School Science Department of Chemistry and Chemical Biology Indiana University-Purdue University Indianapolis 402 N. Blackford St. Indianapolis IN 462020 USA
| | - Kyle J. Colston
- School Science Department of Chemistry and Chemical Biology Indiana University-Purdue University Indianapolis 402 N. Blackford St. Indianapolis IN 462020 USA
| | - Benjamin Mogesa
- Bayer School of Natural Science Department of Chemistry and Biochemistry Duquesne University 600 Forbes Ave. Pittsburgh PA 15282 USA
| | - Joseph Cassell
- School Science Department of Chemistry and Chemical Biology Indiana University-Purdue University Indianapolis 402 N. Blackford St. Indianapolis IN 462020 USA
| | - Eranda Perera
- Bayer School of Natural Science Department of Chemistry and Biochemistry Duquesne University 600 Forbes Ave. Pittsburgh PA 15282 USA
| | - Matthias Zeller
- College of Science Department of Chemistry Purdue University 560 Oval Dr. West Lafayette In 47907 USA
| | - Partha Basu
- School Science Department of Chemistry and Chemical Biology Indiana University-Purdue University Indianapolis 402 N. Blackford St. Indianapolis IN 462020 USA
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73
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Hossain MK, Plutenko MO, Schachner JA, Haukka M, Mösch-Zanetti NC, Fritsky IO, Nordlander E. Dioxomolybdenum(VI) complexes of hydrazone phenolate ligands - syntheses and activities in catalytic oxidation reactions. J INDIAN CHEM SOC 2021. [DOI: 10.1016/j.jics.2021.100006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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74
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Ribeiro PMG, Fernandes HS, Maia LB, Sousa SF, Moura JJG, Cerqueira NMFSA. The complete catalytic mechanism of xanthine oxidase: a computational study. Inorg Chem Front 2021. [DOI: 10.1039/d0qi01029d] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
In this article, quantum mechanical/molecular mechanical (QM/MM) methods were used to study the full catalytic mechanism of xanthine oxidase (XO).
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Affiliation(s)
- Pedro M. G. Ribeiro
- UCIBIO@REQUIMTE
- BioSIM
- Departamento de Biomedicina
- Faculdade de Medicina da Universidade do Porto
- Alameda Professor Hernâni Monteiro
| | - Henrique S. Fernandes
- UCIBIO@REQUIMTE
- BioSIM
- Departamento de Biomedicina
- Faculdade de Medicina da Universidade do Porto
- Alameda Professor Hernâni Monteiro
| | - Luísa B. Maia
- LAQV
- REQUIMTE
- NOVA School of Science and Technology
- Campus de Caparica
- 2829-516 Caparica
| | - Sérgio F. Sousa
- UCIBIO@REQUIMTE
- BioSIM
- Departamento de Biomedicina
- Faculdade de Medicina da Universidade do Porto
- Alameda Professor Hernâni Monteiro
| | - José J. G. Moura
- LAQV
- REQUIMTE
- NOVA School of Science and Technology
- Campus de Caparica
- 2829-516 Caparica
| | - Nuno M. F. S. A. Cerqueira
- UCIBIO@REQUIMTE
- BioSIM
- Departamento de Biomedicina
- Faculdade de Medicina da Universidade do Porto
- Alameda Professor Hernâni Monteiro
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75
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Nasibipour M, Safaei E, Wojtczak A, Jagličić Z, Galindo A, Masoumpour MS. A biradical oxo-molybdenum complex containing semiquinone and o-aminophenol benzoxazole-based ligands. RSC Adv 2020; 10:40853-40866. [PMID: 35519205 PMCID: PMC9059147 DOI: 10.1039/d0ra06351g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Accepted: 10/16/2020] [Indexed: 12/27/2022] Open
Abstract
We report a new mononuclear molybdenum(iv) complex, MoOLBISLSQ, in which LSQ (2,4-di-tert-butyl o-semibenzoquinone ligand) has been prepared from the reaction of the o-iminosemibenzoquinone form of a tridentate non-innocent benzoxazole ligand, LBIS, and MoO2(acac)2. The complex was characterized by X-ray crystallography, elemental analysis, IR and UV-vis spectroscopy and magnetic susceptibility measurements. The crystal structure of MoOLBISLSQ revealed a distorted octahedral geometry around the metal centre, surrounded by one O and two N atoms of LBIS and two O atoms of LSQ. The effective magnetic moment (μ eff) of MoOLBISLSQ decreased from 2.36 to 0.2 μB in the temperature range of 290 to 2 K, indicating a singlet ground state caused by antiferromagnetic coupling between the metal and ligand centred unpaired electrons. Also, the latter led to the EPR silence of the complex. Cyclic voltammetry (CV) studies indicate both ligand and metal-centered redox processes. MoOLBISLSQ was applied as a catalyst for the oxidative cleavage of cyclohexene to adipic acid and selective oxidation of sulfides to sulfones with aqueous hydrogen peroxide.
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Affiliation(s)
- Mina Nasibipour
- Department of Chemistry, College of Sciences, Shiraz University 71454 Shiraz Iran
| | - Elham Safaei
- Department of Chemistry, College of Sciences, Shiraz University 71454 Shiraz Iran
| | - Andrzej Wojtczak
- Nicolaus Copernicus University, Faculty of Chemistry 87-100 Torun Poland
| | - Zvonko Jagličić
- Institute of Mathematics, Physics and Mechanics & Faculty of Civil and Geodetic Engineering, University of Ljubljana Jadranska 19 Ljubljana Slovenia
| | - Agustín Galindo
- Departamento de Química Inorgánica, Facultad de Química, Universidad de Sevilla Aptdo. 1203 41071 Sevilla Spain
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76
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Yang JY, Kerr TA, Wang XS, Barlow JM. Reducing CO2 to HCO2– at Mild Potentials: Lessons from Formate Dehydrogenase. J Am Chem Soc 2020; 142:19438-19445. [DOI: 10.1021/jacs.0c07965] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Jenny Y. Yang
- Department of Chemistry, University of California, Irvine, California 92697, United States
| | - Tyler A. Kerr
- Department of Chemistry, University of California, Irvine, California 92697, United States
| | - Xinran S. Wang
- Department of Chemistry, University of California, Irvine, California 92697, United States
| | - Jeffrey M. Barlow
- Department of Chemistry, University of California, Irvine, California 92697, United States
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77
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Mayr SJ, Mendel RR, Schwarz G. Molybdenum cofactor biology, evolution and deficiency. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2020; 1868:118883. [PMID: 33017596 DOI: 10.1016/j.bbamcr.2020.118883] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 09/21/2020] [Accepted: 09/24/2020] [Indexed: 12/14/2022]
Abstract
The molybdenum cofactor (Moco) represents an ancient metal‑sulfur cofactor, which participates as catalyst in carbon, nitrogen and sulfur cycles, both on individual and global scale. Given the diversity of biological processes dependent on Moco and their evolutionary age, Moco is traced back to the last universal common ancestor (LUCA), while Moco biosynthetic genes underwent significant changes through evolution and acquired additional functions. In this review, focused on eukaryotic Moco biology, we elucidate the benefits of gene fusions on Moco biosynthesis and beyond. While originally the gene fusions were driven by biosynthetic advantages such as coordinated expression of functionally related proteins and product/substrate channeling, they also served as origin for the development of novel functions. Today, Moco biosynthetic genes are involved in a multitude of cellular processes and loss of the according gene products result in severe disorders, both related to Moco biosynthesis and secondary enzyme functions.
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Affiliation(s)
- Simon J Mayr
- Institute of Biochemistry, Department of Chemistry, Center for Molecular Medicine, University of Cologne, Zuelpicher Str. 47, 50674 Koeln, Germany
| | - Ralf-R Mendel
- Institute of Plant Biology, Braunschweig University of Technology, Humboldtstr. 1, 38106 Braunschweig, Germany
| | - Guenter Schwarz
- Institute of Biochemistry, Department of Chemistry, Center for Molecular Medicine, University of Cologne, Zuelpicher Str. 47, 50674 Koeln, Germany.
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78
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Wang C, Wang D, Liu S, Jiang P, Lin Z, Xu P, Yang K, Lu J, Tong H, Hu L, Zhang W, Chen Q. Engineering the coordination environment enables molybdenum single-atom catalyst for efficient oxygen reduction reaction. J Catal 2020. [DOI: 10.1016/j.jcat.2020.05.034] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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79
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Dkhar L, Sawkmie M, Ka-Ot AL, Joshi SR, Kaminsky W, Kollipara MR. Cp and indenyl ruthenium complexes containing dithione derivatives: Synthesis, antibacterial and antifungal study. J Organomet Chem 2020. [DOI: 10.1016/j.jorganchem.2020.121418] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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80
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Ghosh D, Sinhababu S, Santarsiero BD, Mankad NP. A W/Cu Synthetic Model for the Mo/Cu Cofactor of Aerobic CODH Indicates That Biochemical CO Oxidation Requires a Frustrated Lewis Acid/Base Pair. J Am Chem Soc 2020; 142:12635-12642. [PMID: 32598845 DOI: 10.1021/jacs.0c03343] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Constructing synthetic models of the Mo/Cu active site of aerobic carbon monoxide dehydrogenase (CODH) has been a long-standing synthetic challenge thought to be crucial for understanding how atmospheric concentrations of CO and CO2 are regulated in the global carbon cycle by chemolithoautotrophic bacteria and archaea. Here we report a W/Cu complex that is among the closest synthetic mimics constructed to date, enabled by a silyl protection/deprotection strategy that provided access to a kinetically stabilized complex with mixed O2-/S2- ligation between (bdt)(O)WVI and CuI(NHC) (bdt = benzene dithiolate, NHC = N-heterocyclic carbene) sites. Differences between the inorganic core's structural and electronic features outside the protein environment relative to the native CODH cofactor point to a biochemical CO oxidation mechanism that requires a strained active site geometry, with Lewis acid/base frustration enforced by the protein secondary structure. This new mechanistic insight has the potential to inform synthetic design strategies for multimetallic energy storage catalysts.
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Affiliation(s)
- Dibbendu Ghosh
- Department of Chemistry, University of Illinois at Chicago, 845 W. Taylor Street, Chicago, Illinois 60607, United States
| | - Soumen Sinhababu
- Department of Chemistry, University of Illinois at Chicago, 845 W. Taylor Street, Chicago, Illinois 60607, United States
| | - Bernard D Santarsiero
- Department of Pharmaceutical Sciences, College of Pharmacy, 833 S. Wood Street, Chicago, Illinois 60612, United States
| | - Neal P Mankad
- Department of Chemistry, University of Illinois at Chicago, 845 W. Taylor Street, Chicago, Illinois 60607, United States
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81
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The Requirement of Inorganic Fe-S Clusters for the Biosynthesis of the Organometallic Molybdenum Cofactor. INORGANICS 2020. [DOI: 10.3390/inorganics8070043] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Iron-sulfur (Fe-S) clusters are essential protein cofactors. In enzymes, they are present either in the rhombic [2Fe-2S] or the cubic [4Fe-4S] form, where they are involved in catalysis and electron transfer and in the biosynthesis of metal-containing prosthetic groups like the molybdenum cofactor (Moco). Here, we give an overview of the assembly of Fe-S clusters in bacteria and humans and present their connection to the Moco biosynthesis pathway. In all organisms, Fe-S cluster assembly starts with the abstraction of sulfur from l-cysteine and its transfer to a scaffold protein. After formation, Fe-S clusters are transferred to carrier proteins that insert them into recipient apo-proteins. In eukaryotes like humans and plants, Fe-S cluster assembly takes place both in mitochondria and in the cytosol. Both Moco biosynthesis and Fe-S cluster assembly are highly conserved among all kingdoms of life. Moco is a tricyclic pterin compound with molybdenum coordinated through its unique dithiolene group. Moco biosynthesis begins in the mitochondria in a Fe-S cluster dependent step involving radical/S-adenosylmethionine (SAM) chemistry. An intermediate is transferred to the cytosol where the dithiolene group is formed, to which molybdenum is finally added. Further connections between Fe-S cluster assembly and Moco biosynthesis are discussed in detail.
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82
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Pang H, Lilla EA, Zhang P, Zhang D, Shields TP, Scott LG, Yang W, Yokoyama K. Mechanism of Rate Acceleration of Radical C-C Bond Formation Reaction by a Radical SAM GTP 3',8-Cyclase. J Am Chem Soc 2020; 142:9314-9326. [PMID: 32348669 DOI: 10.1021/jacs.0c01200] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
While the number of characterized radical S-adenosyl-l-methionine (SAM) enzymes is increasing, the roles of these enzymes in radical catalysis remain largely ambiguous. In radical SAM enzymes, the slow radical initiation step kinetically masks the subsequent steps, making it impossible to study the kinetics of radical chemistry. Due to this kinetic masking, it is unknown whether the subsequent radical reactions require rate acceleration by the enzyme active site. Here, we report the first evidence that a radical SAM enzyme MoaA accelerates the radical-mediated C-C bond formation. MoaA catalyzes an unprecedented 3',8-cyclization of GTP into 3',8-cyclo-7,8-dihydro-GTP (3',8-cH2GTP) during the molybdenum cofactor (Moco) biosynthesis. Through a series of EPR and biochemical characterizations, we found that MoaA catalyzes a shunt pathway in which an on-pathway intermediate, GTP C-3' radical, abstracts H-4' atom from (4'R)-5'-deoxyadenosine (5'-dA) to transiently generate 5'-deoxyadenos-4'-yl radical (5'-dA-C4'•) that is subsequently reduced stereospecifically to yield (4'S)-5'-dA. Detailed kinetic characterization of the shunt and the main pathways provided the comprehensive view of MoaA kinetics and determined the rate of the on-pathway 3',8-cyclization step as 2.7 ± 0.7 s-1. Together with DFT calculations, this observation suggested that the 3',8-cyclization by MoaA is accelerated by 6-9 orders of magnitude. Further experimental and theoretical characterizations suggested that the rate acceleration is achieved mainly by constraining the triphosphate and guanine base positions while leaving the ribose flexible, and a transition state stabilization through H-bond and electrostatic interactions with the positively charged R17 residue. This is the first evidence for rate acceleration of radical reactions by a radical SAM enzyme and provides insights into the mechanism by which radical SAM enzymes accelerate radical chemistry.
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Affiliation(s)
- Haoran Pang
- Department of Biochemistry, Duke University School of Medicine, Durham, North Carolina 27710, United States
| | - Edward A Lilla
- Department of Biochemistry, Duke University School of Medicine, Durham, North Carolina 27710, United States
| | - Pan Zhang
- Department of Chemistry, Duke University, Durham, North Carolina 27710, United States
| | - Du Zhang
- Department of Chemistry, Duke University, Durham, North Carolina 27710, United States
| | - Thomas P Shields
- Cassia, LLC, 3030 Bunker Hill Street, Suite 214, San Diego, California 92109, United States
| | - Lincoln G Scott
- Cassia, LLC, 3030 Bunker Hill Street, Suite 214, San Diego, California 92109, United States
| | - Weitao Yang
- Department of Chemistry, Duke University, Durham, North Carolina 27710, United States
| | - Kenichi Yokoyama
- Department of Biochemistry, Duke University School of Medicine, Durham, North Carolina 27710, United States.,Department of Chemistry, Duke University, Durham, North Carolina 27710, United States
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83
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Young T, Niks D, Hakopian S, Tam TK, Yu X, Hille R, Blaha GM. Crystallographic and kinetic analyses of the FdsBG subcomplex of the cytosolic formate dehydrogenase FdsABG from Cupriavidus necator. J Biol Chem 2020; 295:6570-6585. [PMID: 32249211 PMCID: PMC7212643 DOI: 10.1074/jbc.ra120.013264] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 03/30/2020] [Indexed: 01/07/2023] Open
Abstract
Formate oxidation to carbon dioxide is a key reaction in one-carbon compound metabolism, and its reverse reaction represents the first step in carbon assimilation in the acetogenic and methanogenic branches of many anaerobic organisms. The molybdenum-containing dehydrogenase FdsABG is a soluble NAD+-dependent formate dehydrogenase and a member of the NADH dehydrogenase superfamily. Here, we present the first structure of the FdsBG subcomplex of the cytosolic FdsABG formate dehydrogenase from the hydrogen-oxidizing bacterium Cupriavidus necator H16 both with and without bound NADH. The structures revealed that the two iron-sulfur clusters, Fe4S4 in FdsB and Fe2S2 in FdsG, are closer to the FMN than they are in other NADH dehydrogenases. Rapid kinetic studies and EPR measurements of rapid freeze-quenched samples of the NADH reduction of FdsBG identified a neutral flavin semiquinone, FMNH•, not previously observed to participate in NADH-mediated reduction of the FdsABG holoenzyme. We found that this semiquinone forms through the transfer of one electron from the fully reduced FMNH-, initially formed via NADH-mediated reduction, to the Fe2S2 cluster. This Fe2S2 cluster is not part of the on-path chain of iron-sulfur clusters connecting the FMN of FdsB with the active-site molybdenum center of FdsA. According to the NADH-bound structure, the nicotinamide ring stacks onto the re-face of the FMN. However, NADH binding significantly reduced the electron density for the isoalloxazine ring of FMN and induced a conformational change in residues of the FMN-binding pocket that display peptide-bond flipping upon NAD+ binding in proper NADH dehydrogenases.
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Affiliation(s)
- Tynan Young
- Department of Biochemistry, University of California, Riverside, California 92521
| | - Dimitri Niks
- Department of Biochemistry, University of California, Riverside, California 92521
| | - Sheron Hakopian
- Department of Biochemistry, University of California, Riverside, California 92521
| | - Timothy K. Tam
- Department of Biochemistry, University of California, Riverside, California 92521
| | - Xuejun Yu
- Department of Biochemistry, University of California, Riverside, California 92521
| | - Russ Hille
- Department of Biochemistry, University of California, Riverside, California 92521, To whom correspondence may be addressed:
Dept. of Biochemistry, University of California, Riverside, 900 University Ave., Boyce Hall 2404, Riverside, CA 92521. Tel.:
951-827-6354; E-mail:
| | - Gregor M. Blaha
- Department of Biochemistry, University of California, Riverside, California 92521, To whom correspondence may be addressed:
Dept. of Biochemistry, University of California, Riverside, 900 University Ave., Boyce Hall 5489, Riverside, CA 92521. Tel.:
951-827-3832; Fax:
951-827-4294; E-mail:
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84
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Basu P, Colston KJ, Mogesa B. Dithione, the antipodal redox partner of ene-1,2-dithiol ligands and their metal complexes. Coord Chem Rev 2020; 409:213211. [PMID: 38094102 PMCID: PMC10718511 DOI: 10.1016/j.ccr.2020.213211] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Defining the oxidation state of the central atom in a coordination compound is fundamental in understanding the electronic structure and provides a starting point for elucidating molecular properties. The presence of non-innocent ligand(s) can obscure the oxidation state of the central atom as the ligand contribution to the electronic structure is difficult to ascertain. Redox-active ligands, such as dithiolene ligands, are well known non-innocent ligands that can exist in both a fully reduced (Dt2-) and fully oxidized (Dt0) states. Complexes containing the fully oxidized dithione state of the ligand are uncommon and only a few have been completely characterized. Dithione ligands are of interest due to their electron-deficient nature and ability to act as an electron acceptor for more electron-rich moieties, such as other dithiolene ligands or metal centers. This article focuses the syntheses, structures, and metal coordination, particularly coordination compounds, of dithione ligands. Various examples of mono, bis, and tris dithione complexes are discussed.
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Affiliation(s)
- Partha Basu
- Department of Chemistry and Chemical Biology, IUPUI, Indianapolis, IN 46202, United States
| | - Kyle J. Colston
- Department of Chemistry and Chemical Biology, IUPUI, Indianapolis, IN 46202, United States
| | - Benjamin Mogesa
- Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, PA 15282, United States
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85
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Mih N, Monk JM, Fang X, Catoiu E, Heckmann D, Yang L, Palsson BO. Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes. BMC Bioinformatics 2020; 21:162. [PMID: 32349661 PMCID: PMC7191737 DOI: 10.1186/s12859-020-3505-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Accepted: 04/17/2020] [Indexed: 12/16/2022] Open
Abstract
BACKGROUND The reconstruction of metabolic networks and the three-dimensional coverage of protein structures have reached the genome-scale in the widely studied Escherichia coli K-12 MG1655 strain. The combination of the two leads to the formation of a structural systems biology framework, which we have used to analyze differences between the reactive oxygen species (ROS) sensitivity of the proteomes of sequenced strains of E. coli. As proteins are one of the main targets of oxidative damage, understanding how the genetic changes of different strains of a species relates to its oxidative environment can reveal hypotheses as to why these variations arise and suggest directions of future experimental work. RESULTS Creating a reference structural proteome for E. coli allows us to comprehensively map genetic changes in 1764 different strains to their locations on 4118 3D protein structures. We use metabolic modeling to predict basal ROS production levels (ROStype) for 695 of these strains, finding that strains with both higher and lower basal levels tend to enrich their proteomes with antioxidative properties, and speculate as to why that is. We computationally assess a strain's sensitivity to an oxidative environment, based on known chemical mechanisms of oxidative damage to protein groups, defined by their localization and functionality. Two general groups - metalloproteins and periplasmic proteins - show enrichment of their antioxidative properties between the 695 strains with a predicted ROStype as well as 116 strains with an assigned pathotype. Specifically, proteins that a) utilize a molybdenum ion as a cofactor and b) are involved in the biogenesis of fimbriae show intriguing protective properties to resist oxidative damage. Overall, these findings indicate that a strain's sensitivity to oxidative damage can be elucidated from the structural proteome, though future experimental work is needed to validate our model assumptions and findings. CONCLUSION We thus demonstrate that structural systems biology enables a proteome-wide, computational assessment of changes to atomic-level physicochemical properties and of oxidative damage mechanisms for multiple strains in a species. This integrative approach opens new avenues to study adaptation to a particular environment based on physiological properties predicted from sequence alone.
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Affiliation(s)
- Nathan Mih
- Department of Bioengineering, University of California San Diego, La Jolla, CA 92093 USA
- Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA 92093 USA
| | - Jonathan M. Monk
- Department of Bioengineering, University of California San Diego, La Jolla, CA 92093 USA
| | - Xin Fang
- Department of Bioengineering, University of California San Diego, La Jolla, CA 92093 USA
| | - Edward Catoiu
- Department of Bioengineering, University of California San Diego, La Jolla, CA 92093 USA
| | - David Heckmann
- Department of Bioengineering, University of California San Diego, La Jolla, CA 92093 USA
| | - Laurence Yang
- Department of Bioengineering, University of California San Diego, La Jolla, CA 92093 USA
| | - Bernhard O. Palsson
- Department of Bioengineering, University of California San Diego, La Jolla, CA 92093 USA
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Kgs, Lyngby, Denmark
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Leimkühler S. The biosynthesis of the molybdenum cofactors in Escherichia coli. Environ Microbiol 2020; 22:2007-2026. [PMID: 32239579 DOI: 10.1111/1462-2920.15003] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Revised: 03/10/2020] [Accepted: 03/11/2020] [Indexed: 12/29/2022]
Abstract
The biosynthesis of the molybdenum cofactor (Moco) is highly conserved among all kingdoms of life. In all molybdoenzymes containing Moco, the molybdenum atom is coordinated to a dithiolene group present in the pterin-based 6-alkyl side chain of molybdopterin (MPT). In general, the biosynthesis of Moco can be divided into four steps in in bacteria: (i) the starting point is the formation of the cyclic pyranopterin monophosphate (cPMP) from 5'-GTP, (ii) in the second step the two sulfur atoms are inserted into cPMP leading to the formation of MPT, (iii) in the third step the molybdenum atom is inserted into MPT to form Moco and (iv) in the fourth step bis-Mo-MPT is formed and an additional modification of Moco is possible with the attachment of a nucleotide (CMP or GMP) to the phosphate group of MPT, forming the dinucleotide variants of Moco. This review presents an update on the well-characterized Moco biosynthesis in the model organism Escherichia coli including novel discoveries from the recent years.
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Affiliation(s)
- Silke Leimkühler
- Department of Molecular Enzymology, Institute of Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam, Germany
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87
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Salonen P, Peuronen A, Lehtonen A. Bioinspired Mo, W and V complexes bearing a highly hydroxyl-functionalized Schiff base ligand. Inorganica Chim Acta 2020. [DOI: 10.1016/j.ica.2020.119414] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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88
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Hossain MK, Köhntopp A, Haukka M, Richmond MG, Lehtonen A, Nordlander E. Cis- and trans molybdenum oxo complexes of a prochiral tetradentate aminophenolate ligand: Synthesis, characterization and oxotransfer activity. Polyhedron 2020. [DOI: 10.1016/j.poly.2019.114312] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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89
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Berasaluce I, Cseh K, Roller A, Hejl M, Heffeter P, Berger W, Jakupec MA, Kandioller W, Malarek MS, Keppler BK. The First Anticancer Tris(pyrazolyl)borate Molybdenum(IV) Complexes: Tested in Vitro and in Vivo-A Comparison of O,O-, S,O-, and N,N-Chelate Effects. Chemistry 2020; 26:2211-2221. [PMID: 31560142 PMCID: PMC7064950 DOI: 10.1002/chem.201903605] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2019] [Revised: 09/19/2019] [Indexed: 12/22/2022]
Abstract
The synthesis, characterization and biological activity of molybdenum(IV) complexes containing Trofimenko's scorpionato ligand, hydrotris(3-isopropylpyrazolyl)borate (TpiPr ), in addition to varying biologically active as well as other conventional ligands is described. Ligands employed include (O,O-) (S,O-) (N,N-) donors that have been successfully coordinated to the molybdenum center by means of oxygen-atom transfer (OAT) reactions from the known MoVI starting material, TpiPr MoO2 Cl. The synthesized complexes were characterized by standard analytical methods and where possible by X-ray diffraction analysis. The aqueous stability of the compounds was studied by means of UV/Vis spectroscopy and the impact of the attached ligand scaffolds on the oxidation potentials (MoIV to MoV ) was studied by cyclic voltammetry. Utilizing polyvinylpyrrolidone (PVP) as a solubilizing agent, adequate aqueous solubility for biological tests was obtained. Anticancer activity tests and preliminary mode of action studies have been performed in vitro and in vivo.
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Affiliation(s)
- Iker Berasaluce
- Institute of Inorganic ChemistryFaculty of ChemistryUniversity of ViennaWaehringer Straße 421090ViennaAustria
| | - Klaudia Cseh
- Institute of Inorganic ChemistryFaculty of ChemistryUniversity of ViennaWaehringer Straße 421090ViennaAustria
| | - Alexander Roller
- Institute of Inorganic ChemistryFaculty of ChemistryUniversity of ViennaWaehringer Straße 421090ViennaAustria
| | - Michaela Hejl
- Institute of Inorganic ChemistryFaculty of ChemistryUniversity of ViennaWaehringer Straße 421090ViennaAustria
| | - Petra Heffeter
- Research Cluster ‘Translational Cancer Therapy Research“University of ViennaWaehringer Straße 421090ViennaAustria
- Institute of Cancer Research and Comprehensive Cancer CenterMedical University of ViennaBorschkegasse 8a1090ViennaAustria
| | - Walter Berger
- Research Cluster ‘Translational Cancer Therapy Research“University of ViennaWaehringer Straße 421090ViennaAustria
- Institute of Cancer Research and Comprehensive Cancer CenterMedical University of ViennaBorschkegasse 8a1090ViennaAustria
| | - Michael A. Jakupec
- Institute of Inorganic ChemistryFaculty of ChemistryUniversity of ViennaWaehringer Straße 421090ViennaAustria
- Research Cluster ‘Translational Cancer Therapy Research“University of ViennaWaehringer Straße 421090ViennaAustria
| | - Wolfgang Kandioller
- Institute of Inorganic ChemistryFaculty of ChemistryUniversity of ViennaWaehringer Straße 421090ViennaAustria
- Research Cluster ‘Translational Cancer Therapy Research“University of ViennaWaehringer Straße 421090ViennaAustria
| | - Michael S. Malarek
- Institute of Inorganic ChemistryFaculty of ChemistryUniversity of ViennaWaehringer Straße 421090ViennaAustria
| | - Bernhard K. Keppler
- Institute of Inorganic ChemistryFaculty of ChemistryUniversity of ViennaWaehringer Straße 421090ViennaAustria
- Research Cluster ‘Translational Cancer Therapy Research“University of ViennaWaehringer Straße 421090ViennaAustria
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90
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Petel BE, Matson EM. Conversion of NOx1− (x = 2, 3) to NO using an oxygen-deficient polyoxovanadate–alkoxide cluster. Chem Commun (Camb) 2020; 56:555-558. [DOI: 10.1039/c9cc08230a] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
We report the activation of nitrogen-containing oxyanions using an oxygen-deficient polyoxovanadate–alkoxide cluster.
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91
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Duffus BR, Schrapers P, Schuth N, Mebs S, Dau H, Leimkühler S, Haumann M. Anion Binding and Oxidative Modification at the Molybdenum Cofactor of Formate Dehydrogenase from Rhodobacter capsulatus Studied by X-ray Absorption Spectroscopy. Inorg Chem 2019; 59:214-225. [PMID: 31814403 DOI: 10.1021/acs.inorgchem.9b01613] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Formate dehydrogenase (FDH) enzymes are versatile catalysts for CO2 conversion. The FDH from Rhodobacter capsulatus contains a molybdenum cofactor with the dithiolene functions of two pyranopterin guanine dinucleotide molecules, a conserved cysteine, and a sulfido group bound at Mo(VI). In this study, we focused on metal oxidation state and coordination changes in response to exposure to O2, inhibitory anions, and redox agents using X-ray absorption spectroscopy (XAS) at the Mo K-edge. Differences in the oxidative modification of the bis-molybdopterin guanine dinucleotide (bis-MGD) cofactor relative to samples prepared aerobically without inhibitor, such as variations in the relative numbers of sulfido (Mo═S) and oxo (Mo═O) bonds, were observed in the presence of azide (N3-) or cyanate (OCN-). Azide provided best protection against O2, resulting in a quantitatively sulfurated cofactor with a displaced cysteine ligand and optimized formate oxidation activity. Replacement of the cysteine ligand by a formate (HCO2-) ligand at the molybdenum in active enzyme is compatible with our XAS data. Cyanide (CN-) inactivated the enzyme by replacing the sulfido ligand at Mo(VI) with an oxo ligand. Evidence that the sulfido group may become protonated upon molybdenum reduction was obtained. Our results emphasize the role of coordination flexibility at the molybdenum center during inhibitory and catalytic processes of FDH enzymes.
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Affiliation(s)
- Benjamin R Duffus
- Institut für Biochemie und Biologie, Molekulare Enzymologie , Universität Potsdam , Karl-Liebknecht Strasse 24-25 , 14476 Potsdam , Germany
| | - Peer Schrapers
- Institut für Experimentalphysik , Freie Universität Berlin , Arnimallee 14 , 14195 Berlin , Germany
| | - Nils Schuth
- Institut für Experimentalphysik , Freie Universität Berlin , Arnimallee 14 , 14195 Berlin , Germany
| | - Stefan Mebs
- Institut für Experimentalphysik , Freie Universität Berlin , Arnimallee 14 , 14195 Berlin , Germany
| | - Holger Dau
- Institut für Experimentalphysik , Freie Universität Berlin , Arnimallee 14 , 14195 Berlin , Germany
| | - Silke Leimkühler
- Institut für Biochemie und Biologie, Molekulare Enzymologie , Universität Potsdam , Karl-Liebknecht Strasse 24-25 , 14476 Potsdam , Germany
| | - Michael Haumann
- Institut für Experimentalphysik , Freie Universität Berlin , Arnimallee 14 , 14195 Berlin , Germany
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92
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Kalimuthu P, Petitgenet M, Niks D, Dingwall S, Harmer JR, Hille R, Bernhardt PV. The oxidation-reduction and electrocatalytic properties of CO dehydrogenase from Oligotropha carboxidovorans. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2019; 1861:148118. [PMID: 31734195 DOI: 10.1016/j.bbabio.2019.148118] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Revised: 10/19/2019] [Accepted: 11/04/2019] [Indexed: 01/25/2023]
Abstract
CO dehydrogenase (CODH) from the Gram-negative bacterium Oligotropha carboxidovorans is a complex metalloenzyme from the xanthine oxidase family of molybdenum-containing enzymes, bearing a unique binuclear Mo-S-Cu active site in addition to two [2Fe-2S] clusters (FeSI and FeSII) and one equivalent of FAD. CODH catalyzes the oxidation of CO to CO2 with the concomitant introduction of reducing equivalents into the quinone pool, thus enabling the organism to utilize CO as sole source of both carbon and energy. Using a variety of EPR monitored redox titrations and spectroelectrochemistry, we report the redox potentials of CO dehydrogenase at pH 7.2 namely MoVI/V, MoV/IV, FeSI2+/+, FeSII2+/+, FAD/FADH and FADH/FADH-. These potentials are systematically higher than the corresponding potentials seen for other members of the xanthine oxidase family of Mo enzymes, and are in line with CODH utilising the higher potential quinone pool as an electron acceptor instead of pyridine nucleotides. CODH is also active when immobilised on a modified Au working electrode as demonstrated by cyclic voltammetry in the presence of CO.
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Affiliation(s)
- Palraj Kalimuthu
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Australia
| | - Mélanie Petitgenet
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Australia
| | - Dimitri Niks
- Department of Biochemistry, University of California, Riverside, CA 92521, USA
| | - Stephanie Dingwall
- Department of Biochemistry, University of California, Riverside, CA 92521, USA
| | - Jeffrey R Harmer
- Centre for Advanced Imaging, University of Queensland, Brisbane 4072, Australia
| | - Russ Hille
- Department of Biochemistry, University of California, Riverside, CA 92521, USA
| | - Paul V Bernhardt
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Australia.
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93
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DeNike KA, Kilyanek SM. Deoxydehydration of vicinal diols by homogeneous catalysts: a mechanistic overview. ROYAL SOCIETY OPEN SCIENCE 2019; 6:191165. [PMID: 31827851 PMCID: PMC6894556 DOI: 10.1098/rsos.191165] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Accepted: 10/04/2019] [Indexed: 06/10/2023]
Abstract
Deoxydehydration (DODH) is an important reaction for the upconversion of biomass-derived polyols to commodity chemicals such as alkenes and dienes. DODH can be performed by a variety of early metal-oxo catalysts incorporating Re, Mo and V. The varying reduction methods used in the DODH catalytic cycle impact the product distribution, reaction mechanism and the overall yield of the reaction. This review surveys the reduction methods commonly used in homogeneous DODH catalyst systems and their impacts on yield and reaction conditions.
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Affiliation(s)
| | - Stefan M. Kilyanek
- Department of Chemistry and Biochemistry, University of Arkansas, 1 University of Arkansas, Fayetteville, AR 727001, USA
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94
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Targeted knock-in mice expressing the oxidase-fixed form of xanthine oxidoreductase favor tumor growth. Nat Commun 2019; 10:4904. [PMID: 31659168 PMCID: PMC6817904 DOI: 10.1038/s41467-019-12565-z] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Accepted: 09/13/2019] [Indexed: 12/17/2022] Open
Abstract
Xanthine oxidoreductase has been implicated in cancer. Nonetheless, the role played by its two convertible forms, xanthine dehydrogenase (XDH) and oxidase (XO) during tumorigenesis is not understood. Here we produce XDH-stable and XO-locked knock-in (ki) mice to address this question. After tumor transfer, XO ki mice show strongly increased tumor growth compared to wild type (WT) and XDH ki mice. Hematopoietic XO expression is responsible for this effect. After macrophage depletion, tumor growth is reduced. Adoptive transfer of XO-ki macrophages in WT mice increases tumor growth. In vitro, XO ki macrophages produce higher levels of reactive oxygen species (ROS) responsible for the increased Tregs observed in the tumors. Blocking ROS in vivo slows down tumor growth. Collectively, these results indicate that the balance of XO/XDH plays an important role in immune surveillance of tumor development. Strategies that inhibit the XO form specifically may be valuable in controlling cancer growth. The roles of the convertible forms, xanthine dehydrogenase (XDH) and xanthine oxidase (XO) during tumorigenesis is not known. Here, the authors develop XDH-stable and XO-locked knock-in (ki) mice and show increased tumor growth in XO ki mice, via macrophage-mediated immunoregulatory responses.
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95
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Asha T, Sithambaresan M, Prathapachandra Kurup M. Dioxidomolybdenum(VI) complexes chelated with N4-(3-methoxyphenyl)thiosemicarbazone as molybdenum(IV) precursors in oxygen atom transfer process and oxidation of styrene. Polyhedron 2019. [DOI: 10.1016/j.poly.2019.08.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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96
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Armakola E, Salcedo IR, Bazaga-García M, Olivera-Pastor P, Mezei G, Cabeza A, Fernandes TA, Kirillov AM, Demadis KD. Phosphonate Decomposition-Induced Polyoxomolybdate Dumbbell-Type Cluster Formation: Structural Analysis, Proton Conduction, and Catalytic Sulfoxide Reduction. Inorg Chem 2019; 58:11522-11533. [PMID: 31403791 DOI: 10.1021/acs.inorgchem.9b01376] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The reaction of MoO42- with a number of phosphonic acids [bis(phosphonomethyl)glycine, R,S-hydroxyphosphonoacetic acid, 1-hydroxyethane-1,1-diphosphonic acid, phenylphosphonic acid, aminotris(methylene phosphonic acid), and 1,2-ethylenediphosphonic acid] under oxidizing (H2O2) hydrothermal conditions at low pH leads to rupture of the P-C bond, release of orthophosphate ions, and generation of the octanuclear, phosphate-bridged, polyoxometalate molybdenum cluster (NH4)5[Mo8(OH)2O24(μ8-PO4)](H2O)2 (POMPhos). This cluster has been fully characterized and its structure determined. It was studied as a proton conductor, giving moderate values of σ = 2.13 × 10-5 S·cm-1 (25 °C) and 1.17 × 10-4 S·cm-1 (80 °C) at 95% relative humidity, with Ea = 0.27 eV. The POMPhos cluster was then thermally treated at 310 °C, yielding (NH4)2.6(H3O)0.4(PO4Mo12O36) together with an amorphous impurity containing phosphate and molybdenum oxide. This product was also studied for its proton conductivity properties, giving rise to an impressively high value of σ = 2.43 × 10-3 S·cm-1 (25 °C) and 6.67 × 10-3 S·cm-1 (80 °C) at 95% relative humidity, 2 orders of magnitude higher than those corresponding to the "as-synthesized" solid. The utilization of POMPhos in catalytic reduction of different sulfoxides was also evaluated. POMPhos acts as an efficient homogeneous catalyst for the reduction of diphenyl sulfoxide to diphenyl sulfide, as a model reaction. Pinacol was used as a low-cost, environmentally friendly, and highly efficient reducing agent. The effects of different reaction parameters were investigated, namely the type of solvent and reducing agent, presence of acid promoter, reaction time and temperature, loading of catalyst and pinacol, allowing to achieve up to 84-99% yields of sulfide products under optimized conditions. Substrate scope was tested on the examples of diaryl, alkylaryl, dibenzyl, and dialkyl sulfoxides and excellent product yields were obtained.
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Affiliation(s)
- Eirini Armakola
- Crystal Engineering, Growth and Design Laboratory, Department of Chemistry , University of Crete , Voutes Campus , Heraklion , Crete , GR-71003 , Greece
| | - Inés R Salcedo
- Departamento de Química Inorgánica, Cristalografía y Mineralogía , Universidad de Málaga , Campus Teatinos s/n , Málaga 29071 , Spain
| | - Montse Bazaga-García
- Departamento de Química Inorgánica, Cristalografía y Mineralogía , Universidad de Málaga , Campus Teatinos s/n , Málaga 29071 , Spain
| | - Pascual Olivera-Pastor
- Departamento de Química Inorgánica, Cristalografía y Mineralogía , Universidad de Málaga , Campus Teatinos s/n , Málaga 29071 , Spain
| | - Gellert Mezei
- Department of Chemistry , Western Michigan University , Kalamazoo , Michigan 49008-5413 , United States
| | - Aurelio Cabeza
- Departamento de Química Inorgánica, Cristalografía y Mineralogía , Universidad de Málaga , Campus Teatinos s/n , Málaga 29071 , Spain
| | - Tiago A Fernandes
- Centro de Química Estrutural, Instituto Superior Técnico , Universidade de Lisboa , Av. Rovisco Pais , 1049-001 , Lisbon , Portugal
| | - Alexander M Kirillov
- Centro de Química Estrutural, Instituto Superior Técnico , Universidade de Lisboa , Av. Rovisco Pais , 1049-001 , Lisbon , Portugal.,Research Institute of Chemistry , Peoples' Friendship University of Russia (RUDN University) , 6 Miklukho-Maklaya st., Moscow , 117198 , Russian Federation
| | - Konstantinos D Demadis
- Crystal Engineering, Growth and Design Laboratory, Department of Chemistry , University of Crete , Voutes Campus , Heraklion , Crete , GR-71003 , Greece
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97
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98
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DMSO coordinated dioxidomolybdenum(VI) complexes chelated with 3-methoxybenzhydrazone related ligands: Synthesis, structural studies and in vitro cytotoxicity. Polyhedron 2019. [DOI: 10.1016/j.poly.2019.04.045] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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99
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Rosenzweig MW, Hümmer J, Scheurer A, Lamsfus CA, Heinemann FW, Maron L, Mazzanti M, Meyer K. A complete series of uranium(iv) complexes with terminal hydrochalcogenido (EH) and chalcogenido (E) ligands E = O, S, Se, Te. Dalton Trans 2019; 48:10853-10864. [PMID: 30950469 DOI: 10.1039/c9dt00530g] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We here report the synthesis and characterization of a complete series of terminal hydrochalcogenido, U-EH, and chalcogenido uranium(iv) complexes, U≡E (with E = O, S, Se, Te), supported by the (Ad,MeArOH)3tacn (1,4,7-tris(3-(1-adamantyl)-5-methyl-2-hydroxybenzyl)-1,4,7-triazacyclononane) ligand system. Reaction of H2E with the trivalent precursor [((Ad,MeArO)3tacn)U] (1) yields the corresponding uranium(iv) hydrochalcogenido complexes [((Ad,MeArO)3tacn)U(EH)] (2). Subsequent deprotonation of the terminal hydrochalcogenido species with KN(SiMe3)2, in the presence of 2.2.2-cryptand, gives access to the uranium(iv) complexes with terminal chalcogenido ligands [K(2.2.2-crypt)][((Ad,MeArO)3tacn)U≡E] (3). In order to study the influence of the varying terminal chalogenido ligands on the overall molecular and electronic structure, all complexes were studied by single-crystal X-ray diffractometry, UV/vis/NIR, electronic absorption, and IR vibrational spectroscopy as well as SQUID magnetometry and computational analyses (DFT, MO, NBO).
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Affiliation(s)
- Michael W Rosenzweig
- Department of Chemistry and Pharmacy, Inorganic Chemistry, Friedrich-Alexander University Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen, Germany.
| | - Julian Hümmer
- Department of Chemistry and Pharmacy, Inorganic Chemistry, Friedrich-Alexander University Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen, Germany.
| | - Andreas Scheurer
- Department of Chemistry and Pharmacy, Inorganic Chemistry, Friedrich-Alexander University Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen, Germany.
| | - Carlos Alvarez Lamsfus
- LPCNO, Université de Toulouse, INSA Toulouse, 135 Avenue de Rangueil, 31077 Toulouse, France
| | - Frank W Heinemann
- Department of Chemistry and Pharmacy, Inorganic Chemistry, Friedrich-Alexander University Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen, Germany.
| | - Laurent Maron
- LPCNO, Université de Toulouse, INSA Toulouse, 135 Avenue de Rangueil, 31077 Toulouse, France
| | - Marinella Mazzanti
- Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Karsten Meyer
- Department of Chemistry and Pharmacy, Inorganic Chemistry, Friedrich-Alexander University Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen, Germany.
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100
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Tang J, Werchmeister RML, Preda L, Huang W, Zheng Z, Leimkühler S, Wollenberger U, Xiao X, Engelbrekt C, Ulstrup J, Zhang J. Three-Dimensional Sulfite Oxidase Bioanodes Based on Graphene Functionalized Carbon Paper for Sulfite/O2 Biofuel Cells. ACS Catal 2019. [DOI: 10.1021/acscatal.9b01715] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Jing Tang
- Department of Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
| | | | - Loredana Preda
- Department of Molecular Enzymology, University of Potsdam, 14476 Potsdam−Golm, Germany
- Institute of Physical Chemistry of the Romanian Academy, 202 Spl. Independentei, 060021 Bucharest, Romania
| | - Wei Huang
- Department of Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
| | - Zhiyong Zheng
- Department of Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
| | - Silke Leimkühler
- Department of Molecular Enzymology, University of Potsdam, 14476 Potsdam−Golm, Germany
| | - Ulla Wollenberger
- Department of Molecular Enzymology, University of Potsdam, 14476 Potsdam−Golm, Germany
| | - Xinxin Xiao
- Department of Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
| | - Christian Engelbrekt
- Department of Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
| | - Jens Ulstrup
- Department of Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
| | - Jingdong Zhang
- Department of Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
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