51
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Goud EY, Rao BK, Thirupahi G, Hemasri Y, Rao CP, Kumar PV, Rao YJ. Synthesis of HighlyZ-Selective Coumarin Annulated Dioxocine, Dioxacindione and Macrocycles Using Grubbs’ Second-Generation Catalyst. ChemistrySelect 2017. [DOI: 10.1002/slct.201601614] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- E. Yadaiah Goud
- Department of Chemistry; Osmania University; Hyderabad- 500 007 India
| | | | - G. Thirupahi
- Department of Chemistry; Osmania University; Hyderabad- 500 007 India
| | - Y. Hemasri
- Department of Chemistry; Nizam College; Osmania University- 500001 India
| | - Ch. Prasad Rao
- Department of Chemistry; Osmania University; Hyderabad- 500 007 India
| | - P. Vijay Kumar
- Department of Chemistry; Osmania University; Hyderabad- 500 007 India
| | - Y. Jayaprakash Rao
- Department of Chemistry; Osmania University; Hyderabad- 500 007 India
- Department of Chemistry; Telangana University; Nizamabad- 503 322 India
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52
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Jeon MH, Mathew BP, Kuram MR, Myung K, Hong SY. A palladium and gold catalytic system enables direct access to O- and S-linked non-natural glyco-conjugates. Org Biomol Chem 2016; 14:11518-11524. [PMID: 27886320 DOI: 10.1039/c6ob02437h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Here we report a straightforward cross-coupling method for the synthesis of non-natural glycoamino acids from alkyne-bearing monosaccharides and p-iodophenylalanine. Pd/Au-catalyzed Sonogashira coupling is tolerant to both O- and S-glycosides without any epimerization. In addition, no racemization of the amino acid was observed allowing direct access to the homogeneous glyco-conjugate in a single step. Notably, this Pd/Au catalytic system presents enhanced catalytic activity than conventional Pd/Cu and Pd-only platforms, and it further enables the convergent synthesis of glycodipeptides.
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Affiliation(s)
- Min Ho Jeon
- School of Energy and Chemical Engineering, Ulsan National Institute of Science and Technology (UNIST), UNIST-gil 50, Ulsan 689-798, Republic of Korea.
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53
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Marqvorsen MHS, Pedersen MJ, Rasmussen MR, Kristensen SK, Dahl-Lassen R, Jensen HH. Why Is Direct Glycosylation with N-Acetylglucosamine Donors Such a Poor Reaction and What Can Be Done about It? J Org Chem 2016; 82:143-156. [PMID: 28001415 DOI: 10.1021/acs.joc.6b02305] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The monosaccharide N-acetyl-d-glucosamine (GlcNAc) is an abundant building block in naturally occurring oligosaccharides, but its incorporation by chemical glycosylation is challenging since direct reactions are low yielding. This issue, generally agreed upon to be caused by an intermediate 1,2-oxazoline, is often bypassed by introducing extra synthetic steps to avoid the presence of the NHAc functional group during glycosylation. The present paper describes new fundamental mechanistic insights into the inherent challenges of performing direct glycosylation with GlcNAc. These results show that controlling the balance of oxazoline formation and glycosylation is key to achieving acceptable chemical yields. By applying this line of reasoning to direct glycosylation with a traditional thioglycoside donor of GlcNAc, which otherwise affords poor glycosylation yields, one may obtain useful glycosylation results.
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Affiliation(s)
- Mikkel H S Marqvorsen
- Department of Chemistry, Aarhus University , Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Martin J Pedersen
- Department of Chemistry, Aarhus University , Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Michelle R Rasmussen
- Department of Chemistry, Aarhus University , Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Steffan K Kristensen
- Department of Chemistry, Aarhus University , Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Rasmus Dahl-Lassen
- Department of Chemistry, Aarhus University , Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Henrik H Jensen
- Department of Chemistry, Aarhus University , Langelandsgade 140, 8000 Aarhus C, Denmark
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54
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Exner MP, Kuenzl T, To TMT, Ouyang Z, Schwagerus S, Hoesl MG, Hackenberger CPR, Lensen MC, Panke S, Budisa N. Design ofS-Allylcysteine in Situ Production and Incorporation Based on a Novel Pyrrolysyl-tRNA Synthetase Variant. Chembiochem 2016; 18:85-90. [DOI: 10.1002/cbic.201600537] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Matthias P. Exner
- Institut für Chemie; Technische Universität Berlin; Müller-Breslau-Strasse 10 10623 Berlin Germany
| | - Tilmann Kuenzl
- Department of Biosystems Science and Engineering; ETH Zürich; Mattenstrasse 26 4058 Basel Switzerland
| | - Tuyet Mai T. To
- Institut für Chemie; Technische Universität Berlin; Müller-Breslau-Strasse 10 10623 Berlin Germany
| | - Zhaofei Ouyang
- Institut für Chemie; Technische Universität Berlin; Strasse des 17. Juni 124 10623 Berlin Germany
| | - Sergej Schwagerus
- Leibniz-Institut für Molekulare Pharmakologie (FMP); Robert-Roessle-Strasse 10 13125 BerlinBuch Germany
- Humboldt Universität zu Berlin; Department Chemie; Brook-Taylor-Strasse 2 12489 Berlin Germany
| | - Michael G. Hoesl
- Institut für Chemie; Technische Universität Berlin; Müller-Breslau-Strasse 10 10623 Berlin Germany
| | - Christian P. R. Hackenberger
- Leibniz-Institut für Molekulare Pharmakologie (FMP); Robert-Roessle-Strasse 10 13125 BerlinBuch Germany
- Humboldt Universität zu Berlin; Department Chemie; Brook-Taylor-Strasse 2 12489 Berlin Germany
| | - Marga C. Lensen
- Institut für Chemie; Technische Universität Berlin; Strasse des 17. Juni 124 10623 Berlin Germany
| | - Sven Panke
- Department of Biosystems Science and Engineering; ETH Zürich; Mattenstrasse 26 4058 Basel Switzerland
| | - Nediljko Budisa
- Institut für Chemie; Technische Universität Berlin; Müller-Breslau-Strasse 10 10623 Berlin Germany
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55
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Oliveira BL, Guo Z, Boutureira O, Guerreiro A, Jiménez‐Osés G, Bernardes GJL. A Minimal, Unstrained S-Allyl Handle for Pre-Targeting Diels-Alder Bioorthogonal Labeling in Live Cells. Angew Chem Int Ed Engl 2016; 55:14683-14687. [PMID: 27763724 PMCID: PMC5132151 DOI: 10.1002/anie.201608438] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2016] [Revised: 09/27/2016] [Indexed: 11/12/2022]
Abstract
The unstrained S-allyl cysteine amino acid was site-specifically installed on apoptosis protein biomarkers and was further used as a chemical handle and ligation partner for 1,2,4,5-tetrazines by means of an inverse-electron-demand Diels-Alder reaction. We demonstrate the utility of this minimal handle for the efficient labeling of apoptotic cells using a fluorogenic tetrazine dye in a pre-targeting approach. The small size, easy chemical installation, and selective reactivity of the S-allyl handle towards tetrazines should be readily extendable to other proteins and biomolecules, which could facilitate their labeling within live cells.
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Affiliation(s)
- Bruno L. Oliveira
- Department of ChemistryUniversity of CambridgeLensfield RoadCB2 1EWCambridgeUK
| | - Zijian Guo
- Department of ChemistryUniversity of CambridgeLensfield RoadCB2 1EWCambridgeUK
| | - Omar Boutureira
- Department of ChemistryUniversity of CambridgeLensfield RoadCB2 1EWCambridgeUK
| | - Ana Guerreiro
- Instituto de Medicina MolecularFaculdade de MedicinaUniversidade de LisboaAvenida Professor Egas Moniz1649-028LisboaPortugal
| | - Gonzalo Jiménez‐Osés
- Departamento de QuímicaUniversidad de La RiojaCentro de Investigación en Síntesis Química26006LogroñoSpain
- Institute of Biocomputation and Physics of Complex Systems (BIFI)University of ZaragozaBIFI-IQFR (CSIC)ZaragozaSpain
| | - Gonçalo J. L. Bernardes
- Department of ChemistryUniversity of CambridgeLensfield RoadCB2 1EWCambridgeUK
- Instituto de Medicina MolecularFaculdade de MedicinaUniversidade de LisboaAvenida Professor Egas Moniz1649-028LisboaPortugal
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56
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Oliveira BL, Guo Z, Boutureira O, Guerreiro A, Jiménez-Osés G, Bernardes GJL. A Minimal, Unstrained S-Allyl Handle for Pre-Targeting Diels-Alder Bioorthogonal Labeling in Live Cells. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201608438] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Bruno L. Oliveira
- Department of Chemistry; University of Cambridge; Lensfield Road CB2 1EW Cambridge UK
| | - Zijian Guo
- Department of Chemistry; University of Cambridge; Lensfield Road CB2 1EW Cambridge UK
| | - Omar Boutureira
- Department of Chemistry; University of Cambridge; Lensfield Road CB2 1EW Cambridge UK
| | - Ana Guerreiro
- Instituto de Medicina Molecular; Faculdade de Medicina; Universidade de Lisboa; Avenida Professor Egas Moniz 1649-028 Lisboa Portugal
| | - Gonzalo Jiménez-Osés
- Departamento de Química; Universidad de La Rioja; Centro de Investigación en Síntesis Química; 26006 Logroño Spain
- Institute of Biocomputation and Physics of Complex Systems (BIFI); University of Zaragoza; BIFI-IQFR (CSIC) Zaragoza Spain
| | - Gonçalo J. L. Bernardes
- Department of Chemistry; University of Cambridge; Lensfield Road CB2 1EW Cambridge UK
- Instituto de Medicina Molecular; Faculdade de Medicina; Universidade de Lisboa; Avenida Professor Egas Moniz 1649-028 Lisboa Portugal
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57
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58
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Ogura A, Kurbangalieva A, Tanaka K. Exploring the glycan interaction in vivo: Future prospects of neo-glycoproteins for diagnostics. Glycobiology 2016; 26:804-12. [PMID: 26980440 DOI: 10.1093/glycob/cww038] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2015] [Accepted: 03/09/2016] [Indexed: 12/21/2022] Open
Abstract
Herein the biodistributions and in vivo kinetics of chemically prepared neoglycoproteins are reviewed. Chemical methods can be used to conjugate various mono- and oligosaccharides onto a protein surface. The kinetics and organ-specific accumulation profiles of these glycoconjugates, which are introduced through intravenous injections, have been analyzed using conventional dissection studies as well as noninvasive methods such as single photon emission computed tomography, positron emission tomography and fluorescence imaging. These studies suggest that glycan-dependent protein distribution kinetics may be useful for pharmacological and diagnostic applications.
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Affiliation(s)
- Akihiro Ogura
- Biofunctional Synthetic Chemistry Laboratory, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
| | - Almira Kurbangalieva
- Biofunctional Chemistry Laboratory, A. Butlerov Institute of Chemistry, Kazan Federal University, 18 Kremlyovskaya street, Kazan 420008, Russia
| | - Katsunori Tanaka
- Biofunctional Synthetic Chemistry Laboratory, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan Biofunctional Chemistry Laboratory, A. Butlerov Institute of Chemistry, Kazan Federal University, 18 Kremlyovskaya street, Kazan 420008, Russia JST PRESTO, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
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59
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Abstract
Over the years, there have been remarkable efforts in the development of selective protein labeling strategies. In this review, we deliver a comprehensive overview of the currently available bioorthogonal and chemoselective reactions. The ability to introduce bioorthogonal handles to proteins is essential to carry out bioorthogonal reactions for protein labeling in living systems. We therefore summarize the techniques that allow for site-specific "installation" of bioorthogonal handles into proteins. We also highlight the biological applications that have been achieved by selective chemical labeling of proteins.
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Affiliation(s)
- Xi Chen
- Chemical Genomics Centre of the Max Planck Society, Otto-Hahn-Str. 15, 44227 Dortmund, Germany
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60
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Chandra S, Yadav RN, Paniagua A, Banik BK. Indium salts-catalyzed O and S-glycosylation of bromo sugar with benzyl glycolate: an unprecedented hydrogenolysis. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.02.039] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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61
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Exner MP, Köhling S, Rivollier J, Gosling S, Srivastava P, Palyancheva ZI, Herdewijn P, Heck MP, Rademann J, Budisa N. Incorporation of Amino Acids with Long-Chain Terminal Olefins into Proteins. Molecules 2016; 21:287. [PMID: 26938510 PMCID: PMC6272937 DOI: 10.3390/molecules21030287] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2016] [Revised: 02/23/2016] [Accepted: 02/25/2016] [Indexed: 01/05/2023] Open
Abstract
The increasing need for site-specific protein decorations that mimic natural posttranslational modifications requires access to a variety of noncanonical amino acids with moieties enabling bioorthogonal conjugation chemistry. Here we present the incorporation of long-chain olefinic amino acids into model proteins with rational variants of pyrrolysyl-tRNA synthetase (PylRS). Nε-heptenoyl lysine was incorporated for the first time using the known promiscuous variant PylRS(Y306A/Y384F), and Nε-pentenoyl lysine was incorporated in significant yields with the novel variant PylRS(C348A/Y384F). This is the only example of rational modification at position C348 to enlarge the enzyme's binding pocket. Furthermore, we demonstrate the feasibility of our chosen amino acids in the thiol-ene conjugation reaction with a thiolated polysaccharide.
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Affiliation(s)
- Matthias P Exner
- Institute of Chemistry, Technische Universität Berlin, Mueller-Breslau-Strasse 10, 10623 Berlin, Germany.
| | - Sebastian Köhling
- Institute of Pharmacy, Freie Universität Berlin, Königin-Luise-Str. 2+4, 14195 Berlin, Germany.
| | - Julie Rivollier
- Service de Chimie Bioorganique et de Marquage, iBiTecS, CEA, 91191 Gif-sur-Yvette, France.
| | - Sandrine Gosling
- Service de Chimie Bioorganique et de Marquage, iBiTecS, CEA, 91191 Gif-sur-Yvette, France.
| | - Puneet Srivastava
- Medicinal Chemistry, Rega Institute for Medical Research, KU Leuven, Minderbroedersstraat 10, 3000 Leuven, Belgium.
| | - Zheni I Palyancheva
- Institute of Chemistry, Technische Universität Berlin, Mueller-Breslau-Strasse 10, 10623 Berlin, Germany.
| | - Piet Herdewijn
- Medicinal Chemistry, Rega Institute for Medical Research, KU Leuven, Minderbroedersstraat 10, 3000 Leuven, Belgium.
| | - Marie-Pierre Heck
- Service de Chimie Bioorganique et de Marquage, iBiTecS, CEA, 91191 Gif-sur-Yvette, France.
| | - Jörg Rademann
- Institute of Pharmacy, Freie Universität Berlin, Königin-Luise-Str. 2+4, 14195 Berlin, Germany.
| | - Nediljko Budisa
- Institute of Chemistry, Technische Universität Berlin, Mueller-Breslau-Strasse 10, 10623 Berlin, Germany.
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62
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Forbes CR, Pandey AK, Ganguly HK, Yap GPA, Zondlo NJ. 4R- and 4S-iodophenyl hydroxyproline, 4R-pentynoyl hydroxyproline, and S-propargyl-4-thiolphenylalanine: conformationally biased and tunable amino acids for bioorthogonal reactions. Org Biomol Chem 2016; 14:2327-46. [PMID: 26806113 PMCID: PMC5824642 DOI: 10.1039/c5ob02473k] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Bioorthogonal reactions allow the introduction of new functionalities into peptides, proteins, and other biological molecules. The most readily accessible amino acids for bioorthogonal reactions have modest conformational preferences or bases for molecular interactions. Herein we describe the synthesis of 4 novel amino acids containing functional groups for bioorthogonal reactions. (2S,4R)- and (2S,4S)-iodophenyl ethers of hydroxyproline are capable of modification via rapid, specific Suzuki and Sonogashira reactions in water. The synthesis of these amino acids, as Boc-, Fmoc- and free amino acids, was achieved through succinct sequences. These amino acids exhibit well-defined conformational preferences, with the 4S-iodophenyl hydroxyproline crystallographically exhibiting β-turn (ϕ, ψ∼-80°, 0°) or relatively extended (ϕ, ψ∼-80°, +170°) conformations, while the 4R-diastereomer prefers a more compact conformation (ϕ∼-60°). The aryloxyproline diastereomers present the aryl groups in a highly divergent manner, suggesting their stereospecific use in molecular design, medicinal chemistry, and catalysis. Thus, the 4R- and 4S-iodophenyl hydroxyprolines can be differentially applied in distinct structural contexts. The pentynoate ester of 4R-hydroxyproline introduces an alkyne functional group within an amino acid that prefers compact conformations. The propargyl thioether of 4-thiolphenylalanine was synthesized via copper-mediated cross-coupling reaction of thioacetic acid with protected 4-iodophenylalanine, followed by thiolysis and alkylation. This amino acid combines an alkyne functional group with an aromatic amino acid and the ability to tune aromatic and side chain properties via sulfur oxidation. These amino acids provide novel loci for peptide functionalization, with greater control of conformation possible than with other amino acids containing these functional groups.
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Affiliation(s)
- Christina R. Forbes
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
| | - Anil K. Pandey
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
| | - Himal K. Ganguly
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
| | - Glenn P. A. Yap
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
| | - Neal J. Zondlo
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
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63
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Kurimoto K, Yamamura H, Miyagawa A. Functionalization of Aglycones on Sialoside Derivatives to Generate Precursors for Biological Applications. CHEM LETT 2016. [DOI: 10.1246/cl.151003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Kenta Kurimoto
- Department of Materials Science and Engineering, Graduate School of Engineering, Nagoya Institute of Technology
| | - Hatsuo Yamamura
- Department of Materials Science and Engineering, Graduate School of Engineering, Nagoya Institute of Technology
| | - Atsushi Miyagawa
- Department of Materials Science and Engineering, Graduate School of Engineering, Nagoya Institute of Technology
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64
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Sauer DF, Gotzen S, Okuda J. Metatheases: artificial metalloproteins for olefin metathesis. Org Biomol Chem 2016; 14:9174-9183. [DOI: 10.1039/c6ob01475e] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Recent advance in the design of artificial metalloproteins for olefin metathesis is presented.
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Affiliation(s)
- D. F. Sauer
- Institute of Inorganic Chemistry
- RWTH Aachen University
- 52056 Aachen
- Germany
| | - S. Gotzen
- Institute of Inorganic Chemistry
- RWTH Aachen University
- 52056 Aachen
- Germany
| | - J. Okuda
- Institute of Inorganic Chemistry
- RWTH Aachen University
- 52056 Aachen
- Germany
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65
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Tanaka K. Chemically synthesized glycoconjugates on proteins: effects of multivalency and glycoform in vivo. Org Biomol Chem 2016; 14:7610-21. [DOI: 10.1039/c6ob00788k] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The biodistributions and in vivo kinetics of chemically prepared glycoconjugates on proteins are reviewed.
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Affiliation(s)
- Katsunori Tanaka
- Biofunctional Synthetic Chemistry Laboratory
- RIKEN
- Wako-shi
- Japan
- Biofunctional Chemistry Laboratory
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66
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Siegmund V, Schmelz S, Dickgiesser S, Beck J, Ebenig A, Fittler H, Frauendorf H, Piater B, Betz UAK, Avrutina O, Scrima A, Fuchsbauer H, Kolmar H. Locked by Design: A Conformationally Constrained Transglutaminase Tag Enables Efficient Site‐Specific Conjugation. Angew Chem Int Ed Engl 2015; 54:13420-4. [DOI: 10.1002/anie.201504851] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2015] [Indexed: 11/08/2022]
Affiliation(s)
- Vanessa Siegmund
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Germany)
| | - Stefan Schmelz
- Arbeitsgruppe Strukturbiologie der Autophagie, Abteilung Struktur und Funktion der Proteine, Helmholtz‐Zentrum für Infektionsforschung, Inhoffenstr. 7, 38124 Braunschweig (Germany)
| | - Stephan Dickgiesser
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Germany)
| | - Jan Beck
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Germany)
| | - Aileen Ebenig
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Germany)
| | - Heiko Fittler
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Germany)
| | - Holm Frauendorf
- Institut für Organische und Biomolekulare Chemie, Zentrale Analytik/Massenspektrometrie, Georg‐August‐Universität Göttingen, Tammannstr. 2, 37077 Göttingen (Germany)
| | - Birgit Piater
- Merck KGaA, Frankfurterstr. 250, 64293 Darmstadt (Germany)
| | | | - Olga Avrutina
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Germany)
| | - Andrea Scrima
- Arbeitsgruppe Strukturbiologie der Autophagie, Abteilung Struktur und Funktion der Proteine, Helmholtz‐Zentrum für Infektionsforschung, Inhoffenstr. 7, 38124 Braunschweig (Germany)
| | - Hans‐Lothar Fuchsbauer
- Fachbereich Chemie‐ und Biotechnologie, Hochschule Darmstadt, Schnittspahnstraße 12, 64287 Darmstadt (Germany)
| | - Harald Kolmar
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Germany)
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67
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Šnajdr I, Parkan K, Hessler F, Kotora M. Cross-metathesis reaction of α- and β-vinyl C-glycosides with alkenes. Beilstein J Org Chem 2015; 11:1392-7. [PMID: 26425194 PMCID: PMC4578437 DOI: 10.3762/bjoc.11.150] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2015] [Accepted: 07/20/2015] [Indexed: 12/20/2022] Open
Abstract
Cross-metathesis of α- and β-vinyl C-deoxyribosides and α-vinyl C-galactoside with various terminal alkenes under different conditions was studied. The cross-metathesis of the former proceeded with good yields of the corresponding products in ClCH2CH2Cl the latter required the presence of CuI in CH2Cl2 to achieve good yields of the products. A simple method for the preparation of α- and β-vinyl C-deoxyribosides was also developed. In addition, feasibility of deprotection and further transformations were briefly explored.
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Affiliation(s)
- Ivan Šnajdr
- Department of Organic Chemistry, Charles University in Prague, Hlavova 8, 153 00 Praha 2, Czech Republic
| | - Kamil Parkan
- Department of Chemistry of Natural Compounds, University of Chemistry and Technology, Prague, Technická 5, 160 00 Praha 6, Czech Republic
| | - Filip Hessler
- Department of Organic Chemistry, Charles University in Prague, Hlavova 8, 153 00 Praha 2, Czech Republic
| | - Martin Kotora
- Department of Organic Chemistry, Charles University in Prague, Hlavova 8, 153 00 Praha 2, Czech Republic
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68
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Isarov SA, Pokorski JK. Protein ROMP: Aqueous Graft-from Ring-Opening Metathesis Polymerization. ACS Macro Lett 2015; 4:969-973. [PMID: 35596466 DOI: 10.1021/acsmacrolett.5b00497] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ring-opening metathesis polymerization (ROMP) was carried out from the surface of a protein under aqueous conditions. Grubbs' third generation catalyst was modified with PEGylated pyridyl groups to form a water-soluble species that showed high activity in aqueous buffered solutions at near-neutral pH. The modification of a protein with this catalyst to create a stable macroinitiator for ROMP is described. The protein macroinitiator was then used to polymerize water-soluble norbornenes, resulting in high molecular weight protein/polymer conjugates. Varying polymerization time and monomer concentration demonstrated the kinetics of molecular weight evolution and macroinitiator conversion of graft-from ROMP.
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Affiliation(s)
- Sergey A. Isarov
- Department of Physiology and Biophysics, School of Medicine, and ‡Department of
Macromolecular Science and Engineering, School of Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
| | - Jonathan K. Pokorski
- Department of Physiology and Biophysics, School of Medicine, and ‡Department of
Macromolecular Science and Engineering, School of Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
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69
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Siegmund V, Schmelz S, Dickgiesser S, Beck J, Ebenig A, Fittler H, Frauendorf H, Piater B, Betz UAK, Avrutina O, Scrima A, Fuchsbauer H, Kolmar H. Durch Design verbrückt: ein konformativ eingeschränkter Transglutaminase‐Marker ermöglicht effiziente ortsspezifische Konjugation. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201504851] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Vanessa Siegmund
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Deutschland)
| | - Stefan Schmelz
- Arbeitsgruppe Strukturbiologie der Autophagie, Abteilung Struktur und Funktion der Proteine, Helmholtz‐Zentrum für Infektionsforschung, Braunschweig (Deutschland)
| | - Stephan Dickgiesser
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Deutschland)
| | - Jan Beck
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Deutschland)
| | - Aileen Ebenig
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Deutschland)
| | - Heiko Fittler
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Deutschland)
| | - Holm Frauendorf
- Institut für Organische und Biomolekulare Chemie, Zentrale Analytik/Massenspektrometrie, Universität Göttingen (Deutschland)
| | | | | | - Olga Avrutina
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Deutschland)
| | - Andrea Scrima
- Arbeitsgruppe Strukturbiologie der Autophagie, Abteilung Struktur und Funktion der Proteine, Helmholtz‐Zentrum für Infektionsforschung, Braunschweig (Deutschland)
| | | | - Harald Kolmar
- Clemens‐Schöpf‐Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich‐Weiss‐Straße 4, 64287 Darmstadt (Deutschland)
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70
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Basauri-Molina M, Verhoeven DGA, van Schaik AJ, Kleijn H, Klein Gebbink RJM. Ring-Closing and Cross-Metathesis with Artificial Metalloenzymes Created by Covalent Active Site-Directed Hybridization of a Lipase. Chemistry 2015; 21:15676-85. [PMID: 26346291 DOI: 10.1002/chem.201502381] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2015] [Indexed: 11/08/2022]
Abstract
A series of Grubbs-type catalysts that contain lipase-inhibiting phosphoester functionalities have been synthesized and reacted with the lipase cutinase, which leads to artificial metalloenzymes for olefin metathesis. The resulting hybrids comprise the organometallic fragment that is covalently bound to the active amino acid residue of the enzyme host in an orthogonal orientation. Differences in reactivity as well as accessibility of the active site by the functionalized inhibitor became evident through variation of the anchoring motif and substituents on the N-heterocyclic carbene ligand. Such observations led to the design of a hybrid that is active in the ring-closing metathesis and the cross-metathesis of N,N-diallyl-p-toluenesulfonamide and allylbenzene, respectively, the latter being the first example of its kind in the field of artificial metalloenzymes.
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Affiliation(s)
- Manuel Basauri-Molina
- Organic Chemistry and Catalysis, Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, Utrecht 3584CG (The Netherlands)
| | - Dide G A Verhoeven
- Organic Chemistry and Catalysis, Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, Utrecht 3584CG (The Netherlands)
| | - Arnoldus J van Schaik
- Organic Chemistry and Catalysis, Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, Utrecht 3584CG (The Netherlands)
| | - Henk Kleijn
- Organic Chemistry and Catalysis, Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, Utrecht 3584CG (The Netherlands)
| | - Robertus J M Klein Gebbink
- Organic Chemistry and Catalysis, Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, Utrecht 3584CG (The Netherlands).
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71
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Trinh TMN, Nguyen TT, Kopp C, Pieper P, Russo V, Heinrich B, Donnio B, Nguyen TLA, Deschenaux R. Olefin Cross-Metathesis: a Versatile Synthetic Reaction for the Design ofJanusLiquid Crystals. European J Org Chem 2015. [DOI: 10.1002/ejoc.201500754] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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72
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Romero-Estudillo I, Boto A. Domino Process Achieves Site-Selective Peptide Modification with High Optical Purity. Applications to Chain Diversification and Peptide Ligation. J Org Chem 2015; 80:9379-91. [DOI: 10.1021/acs.joc.5b00932] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Ivan Romero-Estudillo
- Instituto de Productos Naturales y Agrobiología del CSIC, Avda. Astrofísico Francisco Sánchez 3, 38206-La Laguna, Tenerife, Spain
| | - Alicia Boto
- Instituto de Productos Naturales y Agrobiología del CSIC, Avda. Astrofísico Francisco Sánchez 3, 38206-La Laguna, Tenerife, Spain
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73
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Affiliation(s)
- Omar Boutureira
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili , C/Marcel·lí Domingo s/n, 43007 Tarragona, Spain
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74
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Suzuki K, Daikoku S, Son SH, Ito Y, Kanie O. Synthetic study of 3-fluorinated sialic acid derivatives. Carbohydr Res 2015; 406:1-9. [PMID: 25658060 DOI: 10.1016/j.carres.2014.12.010] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Revised: 12/22/2014] [Accepted: 12/23/2014] [Indexed: 11/15/2022]
Abstract
Sialic acid derivatives, analogs, and their conjugates are expected to be pharmaceutical candidates such as anti-influenza drugs and also useful probes for investigating the biological role of glycoconjugates. Derivatives of 3-fluorinated sialic acid (3-F-Sia) have been found to be excellent probes in investigating functions and mechanisms of a series of proteins. Here, we describe the syntheses of 3-F-Sia derivatives, which are useful in making biologically important conjugate probes. A practical method for the construction of 3-fluorinated sialosides based on the stereoselective formation of the corresponding anomeric O-trimethylsilyl ether and their nucleophilic attack by an alkyl halide, an allyl halide in particular, was developed. In addition, details of the synthesis of cytidine monophosphate (CMP)-3-F-Sia bearing a fluorescent tag, which has been proven to show dual functions as a substrate of CMP-sialic acid transporter (CST) and an inhibitor of sialyltransferase (STase), are described.
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Affiliation(s)
- Katsuhiko Suzuki
- ERATO, Japan Science and Technology Agency (JST), 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Shusaku Daikoku
- ERATO, Japan Science and Technology Agency (JST), 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Sang-Hyun Son
- ERATO, Japan Science and Technology Agency (JST), 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Yukishige Ito
- ERATO, Japan Science and Technology Agency (JST), 2-1 Hirosawa, Wako, Saitama 351-0198, Japan; Synthetic Cellular Chemistry Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Osamu Kanie
- ERATO, Japan Science and Technology Agency (JST), 2-1 Hirosawa, Wako, Saitama 351-0198, Japan; Institute of Glycoscience, Tokai University, 4-1-1 Kitakaname, Hiratsuka, Kanagawa 259-1292, Japan.
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75
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Albrecht M, Lippach A, Exner MP, Jerbi J, Springborg M, Budisa N, Wenz G. Site-specific conjugation of 8-ethynyl-BODIPY to a protein by [2 + 3] cycloaddition. Org Biomol Chem 2015; 13:6728-36. [DOI: 10.1039/c5ob00505a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
We report a straightforward synthesis of 8-ethynyl-BODIPY derivatives and their potential as fluorescent labeling compounds using an alkyne–azide click chemistry approach.
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Affiliation(s)
- Marcel Albrecht
- Organic Macromolecular Chemistry
- Campus Saarbrücken C4.2
- Saarland University
- D-66123 Saarbrücken
- Germany
| | - Andreas Lippach
- Organic Macromolecular Chemistry
- Campus Saarbrücken C4.2
- Saarland University
- D-66123 Saarbrücken
- Germany
| | | | - Jihene Jerbi
- Physical and Theoretical Chemistry
- Campus Saarbrücken B2.2
- Saarland University
- D-66123 Saarbrücken
- Germany
| | - Michael Springborg
- Physical and Theoretical Chemistry
- Campus Saarbrücken B2.2
- Saarland University
- D-66123 Saarbrücken
- Germany
| | - Nediljko Budisa
- Department of Chemistry-Biocatalysis
- TU Berlin
- D-10623 Berlin
- Germany
| | - Gerhard Wenz
- Organic Macromolecular Chemistry
- Campus Saarbrücken C4.2
- Saarland University
- D-66123 Saarbrücken
- Germany
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76
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Edwards GA, Culp PA, Chalker JM. Allyl sulphides in olefin metathesis: catalyst considerations and traceless promotion of ring-closing metathesis. Chem Commun (Camb) 2015; 51:515-8. [DOI: 10.1039/c4cc07932a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Allyl sulphides provoke rapid olefin metathesis when matched with an appropriate catalyst. In relay metathesis, allyl sulphides can serve as traceless promoters that facilitate the synthesis of non-sulphide targets.
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Affiliation(s)
- Grant A. Edwards
- The University of Tulsa
- Department of Chemistry and Biochemistry
- Tulsa
- USA
| | - Phillip A. Culp
- The University of Tulsa
- Department of Chemistry and Biochemistry
- Tulsa
- USA
| | - Justin M. Chalker
- The University of Tulsa
- Department of Chemistry and Biochemistry
- Tulsa
- USA
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77
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Kline T, Steiner AR, Penta K, Sato AK, Hallam TJ, Yin G. Methods to Make Homogenous Antibody Drug Conjugates. Pharm Res 2014; 32:3480-93. [PMID: 25511917 PMCID: PMC4596908 DOI: 10.1007/s11095-014-1596-8] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2014] [Accepted: 12/03/2014] [Indexed: 02/06/2023]
Abstract
Antibody drug conjugates (ADCs) have progressed from hypothesis to approved therapeutics in less than 30 years, and the technologies available to modify both the antibodies and the cytotoxic drugs are expanding rapidly. For reasons well reviewed previously, the field is trending strongly toward homogeneous, defined antibody conjugation. In this review we present the antibody and small molecule chemistries that are currently used and being explored to develop specific, homogenous ADCs.
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Affiliation(s)
- Toni Kline
- Sutro Biopharma, Inc, 310 Utah Ave Ste 150, South San Francisco, California, 94080, USA
| | - Alexander R Steiner
- Sutro Biopharma, Inc, 310 Utah Ave Ste 150, South San Francisco, California, 94080, USA
| | - Kalyani Penta
- Sutro Biopharma, Inc, 310 Utah Ave Ste 150, South San Francisco, California, 94080, USA
| | - Aaron K Sato
- Sutro Biopharma, Inc, 310 Utah Ave Ste 150, South San Francisco, California, 94080, USA
| | - Trevor J Hallam
- Sutro Biopharma, Inc, 310 Utah Ave Ste 150, South San Francisco, California, 94080, USA
| | - Gang Yin
- Sutro Biopharma, Inc, 310 Utah Ave Ste 150, South San Francisco, California, 94080, USA.
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78
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Vallée MRJ, Majkut P, Krause D, Gerrits M, Hackenberger CPR. Chemoselective Bioconjugation of Triazole Phosphonites in Aqueous Media. Chemistry 2014; 21:970-4. [DOI: 10.1002/chem.201404690] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Indexed: 11/07/2022]
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79
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McKay CS, Finn MG. Click chemistry in complex mixtures: bioorthogonal bioconjugation. CHEMISTRY & BIOLOGY 2014; 21:1075-101. [PMID: 25237856 PMCID: PMC4331201 DOI: 10.1016/j.chembiol.2014.09.002] [Citation(s) in RCA: 551] [Impact Index Per Article: 55.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2014] [Revised: 09/01/2014] [Accepted: 09/02/2014] [Indexed: 01/18/2023]
Abstract
The selective chemical modification of biological molecules drives a good portion of modern drug development and fundamental biological research. While a few early examples of reactions that engage amine and thiol groups on proteins helped establish the value of such processes, the development of reactions that avoid most biological molecules so as to achieve selectivity in desired bond-forming events has revolutionized the field. We provide an update on recent developments in bioorthogonal chemistry that highlights key advances in reaction rates, biocompatibility, and applications. While not exhaustive, we hope this summary allows the reader to appreciate the rich continuing development of good chemistry that operates in the biological setting.
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Affiliation(s)
- Craig S McKay
- School of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - M G Finn
- School of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA 30332, USA.
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80
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Spicer CD, Davis BG. Selective chemical protein modification. Nat Commun 2014; 5:4740. [PMID: 25190082 DOI: 10.1038/ncomms5740] [Citation(s) in RCA: 716] [Impact Index Per Article: 71.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2013] [Accepted: 07/21/2014] [Indexed: 02/06/2023] Open
Abstract
Chemical modification of proteins is an important tool for probing natural systems, creating therapeutic conjugates and generating novel protein constructs. Site-selective reactions require exquisite control over both chemo- and regioselectivity, under ambient, aqueous conditions. There are now various methods for achieving selective modification of both natural and unnatural amino acids--each with merits and limitations--providing a 'toolkit' that until 20 years ago was largely limited to reactions at nucleophilic cysteine and lysine residues. If applied in a biologically benign manner, this chemistry could form the basis of true Synthetic Biology.
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Affiliation(s)
- Christopher D Spicer
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK
| | - Benjamin G Davis
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK
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81
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Mangold S, O’Leary DJ, Grubbs RH. Z-Selective olefin metathesis on peptides: investigation of side-chain influence, preorganization, and guidelines in substrate selection. J Am Chem Soc 2014; 136:12469-78. [PMID: 25102124 PMCID: PMC4156862 DOI: 10.1021/ja507166g] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2014] [Indexed: 12/27/2022]
Abstract
Olefin metathesis has emerged as a promising strategy for modulating the stability and activity of biologically relevant compounds; however, the ability to control olefin geometry in the product remains a challenge. Recent advances in the design of cyclometalated ruthenium catalysts has led to new strategies for achieving such control with high fidelity and Z selectivity, but the scope and limitations of these catalysts on substrates bearing multiple functionalities, including peptides, remained unexplored. Herein, we report an assessment of various factors that contribute to both productive and nonproductive Z-selective metathesis on peptides. The influence of sterics, side-chain identity, and preorganization through peptide secondary structure are explored by homodimerization, cross metathesis, and ring-closing metathesis. Our results indicate that the amino acid side chain and identity of the olefin profoundly influence the activity of cyclometalated ruthenium catalysts in Z-selective metathesis. The criteria set forth for achieving high conversion and Z selectivity are highlighted by cross metathesis and ring-closing metathesis on diverse peptide substrates. The principles outlined in this report are important not only for expanding the scope of Z-selective olefin metathesis to peptides but also for applying stereoselective olefin metathesis in general synthetic endeavors.
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Affiliation(s)
- Shane
L. Mangold
- Arnold
and Mabel Beckman Laboratories for Chemical Synthesis, Division of
Chemistry and Chemical Engineering, California
Institute of Technology, Pasadena, California 91125, United States
| | - Daniel J. O’Leary
- Department
of Chemistry, Pomona College, Claremont, California 91711, United States
| | - Robert H. Grubbs
- Arnold
and Mabel Beckman Laboratories for Chemical Synthesis, Division of
Chemistry and Chemical Engineering, California
Institute of Technology, Pasadena, California 91125, United States
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82
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Sudakow A, Papke U, Lindel T. Water compatible photoarylation of amino acids and peptides. Chemistry 2014; 20:10223-6. [PMID: 25042820 DOI: 10.1002/chem.201402959] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2014] [Indexed: 12/15/2022]
Abstract
A novel photoarylation of amino acids and peptides is described, which tolerates the presence of water. Irradiation of Boc-protected amino acids in the presence of N-protected 2-azidobenzimidazoles leads to selective arylation of carboxy termini or side chains. The new reaction also works for peptides. Irradiation of the nonapeptide H-SPSYVYHQF-OH also resulted in selective arylation of the tyrosine side chains, as indicated by ESI-MS/MS fragmentation. Chemo- and regioselectivity could add the title reaction to the repertoire of photoaffinity labeling methods.
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Affiliation(s)
- Alex Sudakow
- Institute of Organic Chemistry, TU Braunschweig, Hagenring 30, 38106 Braunschweig (Germany), Fax: (+49) 531-391-7744
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83
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Herranz F, Salinas B, Groult H, Pellico J, Lechuga-Vieco AV, Bhavesh R, Ruiz-Cabello J. Superparamagnetic Nanoparticles for Atherosclerosis Imaging. NANOMATERIALS (BASEL, SWITZERLAND) 2014; 4:408-438. [PMID: 28344230 PMCID: PMC5304673 DOI: 10.3390/nano4020408] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2014] [Revised: 05/15/2014] [Accepted: 05/16/2014] [Indexed: 12/12/2022]
Abstract
The production of magnetic nanoparticles of utmost quality for biomedical imaging requires several steps, from the synthesis of highly crystalline magnetic cores to the attachment of the different molecules on the surface. This last step probably plays the key role in the production of clinically useful nanomaterials. The attachment of the different biomolecules should be performed in a defined and controlled fashion, avoiding the random adsorption of the components that could lead to undesirable byproducts and ill-characterized surface composition. In this work, we review the process of creating new magnetic nanomaterials for imaging, particularly for the detection of atherosclerotic plaque, in vivo. Our focus will be in the different biofunctionalization techniques that we and several other groups have recently developed. Magnetic nanomaterial functionalization should be performed by chemoselective techniques. This approach will facilitate the application of these nanomaterials in the clinic, not as an exception, but as any other pharmacological compound.
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Affiliation(s)
- Fernando Herranz
- Advanced Imaging Unit, Department of Epidemiology, Atherothrombosis and Imaging, Spanish National Centre for Cardiovascular Research (CNIC), Melchor Fernández Almagro, 3, 28029 Madrid, Spain.
- CIBER of Pulmonary Diseases, Biomedical Research Network, Carlos III Health Institute, 28029 Madrid, Spain.
| | - Beatriz Salinas
- Advanced Imaging Unit, Department of Epidemiology, Atherothrombosis and Imaging, Spanish National Centre for Cardiovascular Research (CNIC), Melchor Fernández Almagro, 3, 28029 Madrid, Spain.
- CIBER of Pulmonary Diseases, Biomedical Research Network, Carlos III Health Institute, 28029 Madrid, Spain.
| | - Hugo Groult
- Advanced Imaging Unit, Department of Epidemiology, Atherothrombosis and Imaging, Spanish National Centre for Cardiovascular Research (CNIC), Melchor Fernández Almagro, 3, 28029 Madrid, Spain.
- CIBER of Pulmonary Diseases, Biomedical Research Network, Carlos III Health Institute, 28029 Madrid, Spain.
| | - Juan Pellico
- Advanced Imaging Unit, Department of Epidemiology, Atherothrombosis and Imaging, Spanish National Centre for Cardiovascular Research (CNIC), Melchor Fernández Almagro, 3, 28029 Madrid, Spain.
- CIBER of Pulmonary Diseases, Biomedical Research Network, Carlos III Health Institute, 28029 Madrid, Spain.
| | - Ana V Lechuga-Vieco
- Advanced Imaging Unit, Department of Epidemiology, Atherothrombosis and Imaging, Spanish National Centre for Cardiovascular Research (CNIC), Melchor Fernández Almagro, 3, 28029 Madrid, Spain.
- CIBER of Pulmonary Diseases, Biomedical Research Network, Carlos III Health Institute, 28029 Madrid, Spain.
| | - Riju Bhavesh
- Advanced Imaging Unit, Department of Epidemiology, Atherothrombosis and Imaging, Spanish National Centre for Cardiovascular Research (CNIC), Melchor Fernández Almagro, 3, 28029 Madrid, Spain.
| | - J Ruiz-Cabello
- Advanced Imaging Unit, Department of Epidemiology, Atherothrombosis and Imaging, Spanish National Centre for Cardiovascular Research (CNIC), Melchor Fernández Almagro, 3, 28029 Madrid, Spain.
- CIBER of Pulmonary Diseases, Biomedical Research Network, Carlos III Health Institute, 28029 Madrid, Spain.
- Department of Physicochemistry II, Faculty of Pharmacy, Complutense University Madrid (UCM), Plaza Ramón y Cajal s/n Ciudad Universitaria, 28040 Madrid, Spain.
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84
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Wallace S, Chin JW. Strain-promoted sydnone bicyclo-[6.1.0]-nonyne cycloaddition†Electronic supplementary information (ESI) available: Full experimental details, 1H/ 13C NMR spectral data, protein synthesis and purification. See DOI: 10.1039/c3sc53332h. Chem Sci 2014; 5:1742-1744. [PMID: 25580211 PMCID: PMC4285100 DOI: 10.1039/c3sc53332h] [Citation(s) in RCA: 87] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2013] [Accepted: 01/22/2014] [Indexed: 01/28/2023] Open
Abstract
The discovery and exploration of bioorthogonal chemical reactions and the biosynthetic incorporation of their components into biomolecules for specific labelling is an important challenge. Here we describe the reaction of a phenyl sydnone 1,3-dipole with a bicyclononyne dipolarophile. This strain-promoted reaction proceeds without transition metal catalysis in aqueous buffer, at physiological temperature, and pressure with a rate comparable to that of other bioorthogonal reactions. We demonstrate the quantitative and specific labelling of a genetically encoded bicyclononyne with a sydnone fluorophore conjugate, demonstrating the utility of this approach for bioorthogonal protein labelling.
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Affiliation(s)
- Stephen Wallace
- Medical Research Council Laboratory of Molecular Biology , Francis Crick Avenue, Cambridge Biomedical Campus , Cambridge , CB2 0QH , UK . ; http://www.2.mrc-lmb.cam.ac.uk/ccsb/
| | - Jason W Chin
- Medical Research Council Laboratory of Molecular Biology , Francis Crick Avenue, Cambridge Biomedical Campus , Cambridge , CB2 0QH , UK . ; http://www.2.mrc-lmb.cam.ac.uk/ccsb/
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85
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Lang K, Chin JW. Cellular incorporation of unnatural amino acids and bioorthogonal labeling of proteins. Chem Rev 2014; 114:4764-806. [PMID: 24655057 DOI: 10.1021/cr400355w] [Citation(s) in RCA: 787] [Impact Index Per Article: 78.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Kathrin Lang
- Medical Research Council Laboratory of Molecular Biology , Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom
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86
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Patterson DM, Nazarova LA, Prescher JA. Finding the right (bioorthogonal) chemistry. ACS Chem Biol 2014; 9:592-605. [PMID: 24437719 DOI: 10.1021/cb400828a] [Citation(s) in RCA: 531] [Impact Index Per Article: 53.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Bioorthogonal chemistries can be used to tag diverse classes of biomolecules in cells and other complex environments. With over 20 unique transformations now available, though, selecting an appropriate reaction for a given experiment is challenging. In this article, we compare and contrast the most common classes of bioorthogonal chemistries and provide a framework for matching the reactions with downstream applications. We also discuss ongoing efforts to identify novel biocompatible reactions and methods to control their reactivity. The continued expansion of the bioorthogonal toolkit will provide new insights into biomolecule networks and functions and thus refine our understanding of living systems.
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Affiliation(s)
- David M. Patterson
- Departments of †Chemistry, ‡Molecular Biology & Biochemistry, and §Pharmaceutical Sciences, University of California, Irvine, California 92697, United States
| | - Lidia A. Nazarova
- Departments of †Chemistry, ‡Molecular Biology & Biochemistry, and §Pharmaceutical Sciences, University of California, Irvine, California 92697, United States
| | - Jennifer A. Prescher
- Departments of †Chemistry, ‡Molecular Biology & Biochemistry, and §Pharmaceutical Sciences, University of California, Irvine, California 92697, United States
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87
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Sánchez MI, Penas C, Vázquez ME, Mascareñas JL. Metal-catalyzed uncaging of DNA-binding agents in living cells†Electronic supplementary information (ESI) available: Synthesis and characterization of the studied molecules and required precursors. NMR, UV, and fluorescence spectra, titrations, control experiments, and detailed procedures for cell uptake and co-staining experiments. See DOI: 10.1039/c3sc53317dClick here for additional data file. Chem Sci 2014; 5:1901-1907. [PMID: 25632343 PMCID: PMC4304260 DOI: 10.1039/c3sc53317d] [Citation(s) in RCA: 86] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2013] [Accepted: 01/30/2014] [Indexed: 12/27/2022] Open
Abstract
Ruthenium-catalyzed activation of DNA-binding compounds in aqueous buffers and in cellular environments.
Attachment of alloc protecting groups to the amidine units of fluorogenic DNA-binding bisbenzamidines or to the amino groups of ethidium bromide leads to a significant reduction of their DNA affinity. More importantly, the active DNA-binding species can be readily regenerated by treatment with ruthenium catalysts in aqueous conditions, even in cell cultures. The catalytic chemical uncaging can be easily monitored by fluorescence microscopy, because the protected products display both different emission properties and cell distribution to the parent compounds.
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Affiliation(s)
- Mateo I Sánchez
- Departamento de Química Orgánica e Centro Singular de Investigación en Química Biolóxica y Materiais Moleculares (CIQUS) , Universidade de Santiago de Compostela , 15782 Santiago de Compostela , Spain . ; Tel: +34 881 81 44 05
| | - Cristina Penas
- Departamento de Química Orgánica e Centro Singular de Investigación en Química Biolóxica y Materiais Moleculares (CIQUS) , Universidade de Santiago de Compostela , 15782 Santiago de Compostela , Spain . ; Tel: +34 881 81 44 05
| | - M Eugenio Vázquez
- Departamento de Química Orgánica e Centro Singular de Investigación en Química Biolóxica y Materiais Moleculares (CIQUS) , Universidade de Santiago de Compostela , 15782 Santiago de Compostela , Spain . ; Tel: +34 881 81 44 05
| | - José L Mascareñas
- Departamento de Química Orgánica e Centro Singular de Investigación en Química Biolóxica y Materiais Moleculares (CIQUS) , Universidade de Santiago de Compostela , 15782 Santiago de Compostela , Spain . ; Tel: +34 881 81 44 05
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88
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Koh MJ, Khan RKM, Torker S, Hoveyda AH. Broadly ApplicableZ- and Diastereoselective Ring-Opening/Cross-Metathesis Catalyzed by a Dithiolate Ru Complex. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201309430] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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89
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Koh MJ, Khan RKM, Torker S, Hoveyda AH. Broadly ApplicableZ- and Diastereoselective Ring-Opening/Cross-Metathesis Catalyzed by a Dithiolate Ru Complex. Angew Chem Int Ed Engl 2014; 53:1968-72. [DOI: 10.1002/anie.201309430] [Citation(s) in RCA: 91] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2013] [Indexed: 01/06/2023]
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90
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Affiliation(s)
- Kathrin Lang
- Medical Research Council - Laboratory
of Molecular Biology, Francis Crick
Avenue, Cambridge CB2 0QH, U.K
| | - Jason W. Chin
- Medical Research Council - Laboratory
of Molecular Biology, Francis Crick
Avenue, Cambridge CB2 0QH, U.K
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91
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The Influence of Structure on Reactivity in Alkene Metathesis. ADVANCES IN PHYSICAL ORGANIC CHEMISTRY 2014. [DOI: 10.1016/b978-0-12-800256-8.00002-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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92
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Boutureira O, Isabel Matheu M, Díaz Y, Castillón S. Ruthenium-catalyzed cross-metathesis with electron-rich phenyl vinyl sulfide enables access to 2,3-dideoxy-d-ribopyranose ring system donors. RSC Adv 2014. [DOI: 10.1039/c4ra01668h] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Microwave irradiation effectively accelerates the cross-metathesis reaction of 2-deoxy-d-ribose hydroxyalkene and derivatives with electron-rich phenyl vinyl sulfide using commercially available ruthenium-based catalysts, thus providing a flexible metal-mediated route to 2,3-dideoxy-d-ribopyranose ring system donors.
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Affiliation(s)
- Omar Boutureira
- Departament de Química Analítica i Química Orgànica
- Universitat Rovira i Virgili
- C/Marcel·lí Domingo s/n
- 43007 Tarragona, Spain
| | - M. Isabel Matheu
- Departament de Química Analítica i Química Orgànica
- Universitat Rovira i Virgili
- C/Marcel·lí Domingo s/n
- 43007 Tarragona, Spain
| | - Yolanda Díaz
- Departament de Química Analítica i Química Orgànica
- Universitat Rovira i Virgili
- C/Marcel·lí Domingo s/n
- 43007 Tarragona, Spain
| | - Sergio Castillón
- Departament de Química Analítica i Química Orgànica
- Universitat Rovira i Virgili
- C/Marcel·lí Domingo s/n
- 43007 Tarragona, Spain
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93
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Santoro S, Azeredo JB, Nascimento V, Sancineto L, Braga AL, Santi C. “The green side of the moon: ecofriendly aspects of organoselenium chemistry”. RSC Adv 2014. [DOI: 10.1039/c4ra04493b] [Citation(s) in RCA: 150] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Key aspects for the development of a greener synthesis and the use of the organoselenium compounds.
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Affiliation(s)
- Stefano Santoro
- Department of Organic Chemistry
- Arrhenius Laboratory
- Stockholm University
- Stockholm, Sweden
| | - Juliano B. Azeredo
- Laboratório de Síntese de Substâncias de Selênio Bioativas
- Centro de Ciências Físicas e Matemáticas
- Departamento de Química
- Universidade Federal de Santa Catarina
- Florianópolis, Brazil
| | - Vanessa Nascimento
- Laboratório de Síntese de Substâncias de Selênio Bioativas
- Centro de Ciências Físicas e Matemáticas
- Departamento de Química
- Universidade Federal de Santa Catarina
- Florianópolis, Brazil
| | - Luca Sancineto
- Dipartimento di Scienze Farmaceutiche
- Università di Perugia
- Perugia, Italy
| | - Antonio L. Braga
- Laboratório de Síntese de Substâncias de Selênio Bioativas
- Centro de Ciências Físicas e Matemáticas
- Departamento de Química
- Universidade Federal de Santa Catarina
- Florianópolis, Brazil
| | - Claudio Santi
- Dipartimento di Scienze Farmaceutiche
- Università di Perugia
- Perugia, Italy
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94
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Kajetanowicz A, Chatterjee A, Reuter R, Ward TR. Biotinylated Metathesis Catalysts: Synthesis and Performance in Ring Closing Metathesis. Catal Letters 2013. [DOI: 10.1007/s10562-013-1179-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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95
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Abstract
The use of covalent chemistry to track biomolecules in their native environment-a focus of bioorthogonal chemistry-has received considerable interest recently among chemical biologists and organic chemists alike. To facilitate wider adoption of bioorthogonal chemistry in biomedical research, a central effort in the last few years has been focused on the optimization of a few known bioorthogonal reactions, particularly with respect to reaction kinetics improvement, novel genetic encoding systems, and fluorogenic reactions for bioimaging. During these optimizations, three strategies have emerged, including the use of ring strain for substrate activation in the cycloaddition reactions, the discovery of new ligands and privileged substrates for accelerated metal-catalysed reactions, and the design of substrates with pre-fluorophore structures for rapid "turn-on" fluorescence after selective bioorthogonal reactions. In addition, new bioorthogonal reactions based on either modified or completely unprecedented reactant pairs have been reported. Finally, increasing attention has been directed toward the development of mutually exclusive bioorthogonal reactions and their applications in multiple labeling of a biomolecule in cell culture. In this feature article, we wish to present the recent progress in bioorthogonal reactions through the selected examples that highlight the above-mentioned strategies. Considering increasing sophistication in bioorthogonal chemistry development, we strive to project several exciting opportunities where bioorthogonal chemistry can make a unique contribution to biology in the near future.
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Affiliation(s)
- Carlo P Ramil
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, USA.
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96
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Farrell M, Zhou J, Murphy PV. Regiospecific Anomerisation of Acylated Glycosyl Azides and Benzoylated Disaccharides by Using TiCl4. Chemistry 2013; 19:14836-51. [DOI: 10.1002/chem.201302572] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2013] [Indexed: 01/28/2023]
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97
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Matsuo T, Yoshida T, Fujii A, Kawahara K, Hirota S. Effect of Added Salt on Ring-Closing Metathesis Catalyzed by a Water-Soluble Hoveyda–Grubbs Type Complex To Form N-Containing Heterocycles in Aqueous Media. Organometallics 2013. [DOI: 10.1021/om4005302] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Takashi Matsuo
- Graduate
School of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
| | - Takefumi Yoshida
- Graduate
School of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
| | - Akira Fujii
- Graduate
School of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
| | - Keiya Kawahara
- Graduate
School of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
| | - Shun Hirota
- Graduate
School of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
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98
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Lin YA, Boutureira O, Lercher L, Bhushan B, Paton RS, Davis BG. Rapid cross-metathesis for reversible protein modifications via chemical access to Se-allyl-selenocysteine in proteins. J Am Chem Soc 2013; 135:12156-9. [PMID: 23889088 PMCID: PMC3810893 DOI: 10.1021/ja403191g] [Citation(s) in RCA: 96] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
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Cross-metathesis (CM) has recently
emerged as a viable strategy for protein modification. Here, efficient
protein CM has been demonstrated through biomimetic chemical access
to Se-allyl-selenocysteine (Seac), a metathesis-reactive
amino acid substrate, via dehydroalanine. On-protein reaction kinetics
reveal a rapid reaction with rate constants of Seac-mediated-CM comparable
or superior to off-protein rates of many current bioconjugations.
This use of Se-relayed Seac CM on proteins has now
enabled reactions with substrates (allyl GlcNAc, N-allyl acetamide) that were previously not possible for the corresponding
sulfur analogue. This CM strategy was applied to histone proteins
to install a mimic of acetylated lysine (KAc, an epigenetic marker).
The resulting synthetic H3 was successfully recognized by antibody
that binds natural H3-K9Ac. Moreover, Cope-type selenoxide elimination
allowed this putative marker (and function) to be chemically expunged,
regenerating an H3 that can be rewritten to complete a chemically
enabled “write (CM)–erase (ox)–rewrite (CM)”
cycle.
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Affiliation(s)
- Yuya A Lin
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK
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99
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Jha AK, Jain N. Synthesis of glucose-tagged triazolium ionic liquids and their application as solvent and ligand for copper(I) catalyzed amination. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.06.114] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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100
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Shao Q, Zheng Y, Dong X, Tang K, Yan X, Xing B. A Covalent Reporter of β-Lactamase Activity for Fluorescent Imaging and Rapid Screening of Antibiotic-Resistant Bacteria. Chemistry 2013; 19:10903-10. [DOI: 10.1002/chem.201301654] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2013] [Indexed: 01/16/2023]
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