51
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March AM, Assefa T, Bressler C, Doumy G, Galler A, Gawelda W, Kanter E, Németh Z, Pápai M, Southworth S, Young L, Vankó G. Feasibility of Valence-to-Core X-ray Emission Spectroscopy for Tracking Transient Species. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2015; 119:14571-14578. [PMID: 26568779 PMCID: PMC4634714 DOI: 10.1021/jp511838q] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2014] [Revised: 01/22/2015] [Indexed: 05/19/2023]
Abstract
X-ray spectroscopies, when combined in laser-pump, X-ray-probe measurement schemes, can be powerful tools for tracking the electronic and geometric structural changes that occur during the course of a photoinitiated chemical reaction. X-ray absorption spectroscopy (XAS) is considered an established technique for such measurements, and X-ray emission spectroscopy (XES) of the strongest core-to-core emission lines (Kα and Kβ) is now being utilized. Flux demanding valence-to-core XES promises to be an important addition to the time-resolved spectroscopic toolkit. In this paper we present measurements and density functional theory calculations on laser-excited, solution-phase ferrocyanide that demonstrate the feasibility of valence-to-core XES for time-resolved experiments. We discuss technical improvements that will make valence-to-core XES a practical pump-probe technique.
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Affiliation(s)
- Anne Marie March
- X-ray Science Division, Argonne National Laboratory, Argonne, Illinois 60439, United States
- E-mail:
| | | | - Christian Bressler
- European XFEL, Albert-Einstein-Ring 19, 22761 Hamburg, Germany
- The Hamburg Centre for Ultrafast Imaging, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Gilles Doumy
- X-ray Science Division, Argonne National Laboratory, Argonne, Illinois 60439, United States
| | - Andreas Galler
- European XFEL, Albert-Einstein-Ring 19, 22761 Hamburg, Germany
| | | | - Elliot
P. Kanter
- X-ray Science Division, Argonne National Laboratory, Argonne, Illinois 60439, United States
| | - Zoltán Németh
- Wigner Research Centre for Physics, Hungarian
Academy Sciences, H-1525 Budapest, Hungary
| | - Mátyás Pápai
- Wigner Research Centre for Physics, Hungarian
Academy Sciences, H-1525 Budapest, Hungary
| | - Stephen
H. Southworth
- X-ray Science Division, Argonne National Laboratory, Argonne, Illinois 60439, United States
| | - Linda Young
- X-ray Science Division, Argonne National Laboratory, Argonne, Illinois 60439, United States
| | - György Vankó
- Wigner Research Centre for Physics, Hungarian
Academy Sciences, H-1525 Budapest, Hungary
- E-mail:
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52
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Zhang Y, Biggs JD, Mukamel S. Characterizing the Intermediates Compound I and II in the Cytochrome P450 Catalytic Cycle with Nonlinear X-ray Spectroscopy: A Simulation Study. Chemphyschem 2015; 16:2006-14. [PMID: 25873009 DOI: 10.1002/cphc.201500064] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2015] [Revised: 02/24/2015] [Indexed: 11/06/2022]
Abstract
Cytochrome P450 enzymes are an important family of biocatalysts that oxidize chemically inert CH bonds. There are many unresolved questions regarding the catalytic reaction intermediates, in particular P450 Compound I (Cpd-I) and II (Cpd-II). By using simple molecular models, we simulate various X-ray spectroscopy signals, including X-ray absorption near-edge structure (XANES), resonant inelastic X-ray scattering (RIXS), and stimulated X-ray Raman spectroscopy (SXRS) of the low- and high-spin states of Cpd-I and II. Characteristic peak patterns are presented and connected to the corresponding electronic structures. These X-ray spectroscopy techniques are complementary to more conventional infrared and optical spectroscopy and they help to elucidate the evolving electronic structures of transient species along the reaction path.
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Affiliation(s)
- Yu Zhang
- Dept. of Chemistry, University of California, 450 Rowland Hall, Irvine, California 92697 (USA).
| | - Jason D Biggs
- Dept. of Chemistry, University of California, 450 Rowland Hall, Irvine, California 92697 (USA)
| | - Shaul Mukamel
- Dept. of Chemistry, University of California, 450 Rowland Hall, Irvine, California 92697 (USA).
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53
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Alonso-Mori R, Sokaras D, Zhu D, Kroll T, Chollet M, Feng Y, Glownia JM, Kern J, Lemke HT, Nordlund D, Robert A, Sikorski M, Song S, Weng TC, Bergmann U. Photon-in photon-out hard X-ray spectroscopy at the Linac Coherent Light Source. JOURNAL OF SYNCHROTRON RADIATION 2015; 22:612-20. [PMID: 25931076 PMCID: PMC4416677 DOI: 10.1107/s1600577515004488] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2014] [Accepted: 03/03/2015] [Indexed: 05/28/2023]
Abstract
X-ray free-electron lasers (FELs) have opened unprecedented possibilities to study the structure and dynamics of matter at an atomic level and ultra-fast timescale. Many of the techniques routinely used at storage ring facilities are being adapted for experiments conducted at FELs. In order to take full advantage of these new sources several challenges have to be overcome. They are related to the very different source characteristics and its resulting impact on sample delivery, X-ray optics, X-ray detection and data acquisition. Here it is described how photon-in photon-out hard X-ray spectroscopy techniques can be applied to study the electronic structure and its dynamics of transition metal systems with ultra-bright and ultra-short FEL X-ray pulses. In particular, some of the experimental details that are different compared with synchrotron-based setups are discussed and illustrated by recent measurements performed at the Linac Coherent Light Source.
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Affiliation(s)
- Roberto Alonso-Mori
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Dimosthenis Sokaras
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Diling Zhu
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Thomas Kroll
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Mathieu Chollet
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Yiping Feng
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - James M. Glownia
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Jan Kern
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
- Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Henrik T. Lemke
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Dennis Nordlund
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Aymeric Robert
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Marcin Sikorski
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Sanghoon Song
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Tsu-Chien Weng
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Uwe Bergmann
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
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54
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Bartlett SA, Hamilton ML, Evans J. Dynamic structure elucidation of chemical reactivity by laser pulses and X-ray probes. Dalton Trans 2015; 44:6313-9. [PMID: 25741902 DOI: 10.1039/c5dt00210a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Visualising chemical reactions by X-ray methods is a tantalising prospect. New light sources provide the prospect for studying atomic, electronic and energy transfers accompanying chemical change by X-ray spectroscopy and inelastic scattering. Here we assess how this adventure can illuminate inorganic and catalytic chemistry. In particular X-ray inelastic scattering provides a means of exploiting X-ray free electron lasers, as a parallel to laser Raman spectroscopy.
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Affiliation(s)
- Stuart A Bartlett
- Research Complex at Harwell, Rutherford Appleton Laboratory, Didcot, OX11 0FA, UK
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55
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Kroll T, Hadt RG, Wilson SA, Lundberg M, Yan JJ, Weng TC, Sokaras D, Alonso-Mori R, Casa D, Upton MH, Hedman B, Hodgson KO, Solomon EI. Resonant inelastic X-ray scattering on ferrous and ferric bis-imidazole porphyrin and cytochrome c: nature and role of the axial methionine-Fe bond. J Am Chem Soc 2014; 136:18087-99. [PMID: 25475739 PMCID: PMC4291809 DOI: 10.1021/ja5100367] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Axial Cu-S(Met) bonds in electron transfer (ET) active sites are generally found to lower their reduction potentials. An axial S(Met) bond is also present in cytochrome c (cyt c) and is generally thought to increase the reduction potential. The highly covalent nature of the porphyrin environment in heme proteins precludes using many spectroscopic approaches to directly study the Fe site to experimentally quantify this bond. Alternatively, L-edge X-ray absorption spectroscopy (XAS) enables one to directly focus on the 3d-orbitals in a highly covalent environment and has previously been successfully applied to porphyrin model complexes. However, this technique cannot be extended to metalloproteins in solution. Here, we use metal K-edge XAS to obtain L-edge like data through 1s2p resonance inelastic X-ray scattering (RIXS). It has been applied here to a bis-imidazole porphyrin model complex and cyt c. The RIXS data on the model complex are directly correlated to L-edge XAS data to develop the complementary nature of these two spectroscopic methods. Comparison between the bis-imidazole model complex and cyt c in ferrous and ferric oxidation states show quantitative differences that reflect differences in axial ligand covalency. The data reveal an increased covalency for the S(Met) relative to N(His) axial ligand and a higher degree of covalency for the ferric states relative to the ferrous states. These results are reproduced by DFT calculations, which are used to evaluate the thermodynamics of the Fe-S(Met) bond and its dependence on redox state. These results provide insight into a number of previous chemical and physical results on cyt c.
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Affiliation(s)
- Thomas Kroll
- Department of Chemistry, Stanford University , Stanford, California 94305, United States
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56
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Pinjari RV, Delcey MG, Guo M, Odelius M, Lundberg M. Restricted active space calculations of L-edge X-ray absorption spectra: From molecular orbitals to multiplet states. J Chem Phys 2014; 141:124116. [DOI: 10.1063/1.4896373] [Citation(s) in RCA: 98] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Rahul V. Pinjari
- Department of Chemistry - Ångström Laboratory, Uppsala University, SE-751 20 Uppsala, Sweden
| | - Mickaël G. Delcey
- Department of Chemistry - Ångström Laboratory, Uppsala University, SE-751 20 Uppsala, Sweden
| | - Meiyuan Guo
- Department of Chemistry - Ångström Laboratory, Uppsala University, SE-751 20 Uppsala, Sweden
| | - Michael Odelius
- Department of Physics, Stockholm University, AlbaNova University Center, SE-106 91 Stockholm, Sweden
| | - Marcus Lundberg
- Department of Chemistry - Ångström Laboratory, Uppsala University, SE-751 20 Uppsala, Sweden
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57
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Penfold TJ, Reinhard M, Rittmann-Frank MH, Tavernelli I, Rothlisberger U, Milne CJ, Glatzel P, Chergui M. X-ray Spectroscopic Study of Solvent Effects on the Ferrous and Ferric Hexacyanide Anions. J Phys Chem A 2014; 118:9411-8. [DOI: 10.1021/jp5055588] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- T. J. Penfold
- SwissFEL, Paul Scherrer Institute, CH-5232 Villigen, Switzerland
| | | | | | | | | | - C. J. Milne
- SwissFEL, Paul Scherrer Institute, CH-5232 Villigen, Switzerland
| | - P. Glatzel
- European Synchrotron Radiation Facility, Boı̂te Postale 220, 38043 Grenoble Cedex 9, France
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58
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Chen LX, Zhang X, Shelby ML. Recent advances on ultrafast X-ray spectroscopy in the chemical sciences. Chem Sci 2014. [DOI: 10.1039/c4sc01333f] [Citation(s) in RCA: 83] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Molecular snapshots obtained by ultrafast X-ray spectroscopy reveal new insight into fundamental reaction mechanisms at single electron and atomic levels.
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Affiliation(s)
- L. X. Chen
- Chemical Sciences and Engineering Division
- Argonne National Laboratory
- Lemont, USA
- Department of Chemistry
- Northwestern University
| | - X. Zhang
- X-ray Science Division
- Advance Photon Source
- Argonne National Laboratory
- Lemont, USA
| | - M. L. Shelby
- Department of Chemistry
- Northwestern University
- Evanston, USA
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