Modeling the Tungsten Sites of Inactive and Active Forms of Hyperthermophilic Pyrococcus furiosus Aldehyde Ferredoxin Oxidoreductase

Reduction of Tris(benzene-1,2-dithiolate)molybdenum(VI) by Water. A Functional Mo−Hydroxylase Analogue System

Mo(VI)(S(2)C(6)H(4))(3) reacts cleanly and completely with H(2)O in THF to afford [H(3)O](+)[Mo(V)(S(2)C(6)H(4))(3)](-). Kinetic data were fit by the rate equation -d[Mo(VI)(S(2)C(6)H(4))(3)]/dt = k[Mo(VI)(S(2)C(6)H(4))(3)]/[H(3)O(+)], which is consistent with a coupled electron-proton transfer mechanism involving a coordinated H(2)O molecule. The Mo(VI)(S(2)C(6)H(4))(3) reduction is accelerated by the presence of PPh(3) and affords OPPh(3). (18)O isotope tracing shows that H(2)O is the source of oxygen transferred to PPh(3).

Temperature dependent electrochemical investigations of molybdenum and tungsten oxobisdithiolene complexes

To achieve a better understanding why thermophilic and hyperthermophilic organisms use tungsten instead of molybdenum within the active sites of their molybdopterin dependent oxidases, electrochemical investigations of model complexes for the active sites of enzymes belonging to the DMSO reductase (molybdenum) and the aldehyde oxidoreductase (tungsten) family have been undertaken. Cyclic voltammetry and differential pulse voltammetry of four pairs of molybdenum and tungsten oxobisdithiolene compounds show huge differences in the response of their redox potentials to rising or decreasing temperatures, depending on the substituents at the dithiolene group. The mnt2- compounds (1a, 1b) respond with decreasing redox potentials E(1/2) to rising temperatures whereas all other compounds show positive gradients deltaE/deltaT. In every case the values for the gradients for the tungsten compounds are greater than those for the molybdenum compounds. Six of the investigated compounds are known in the literature and two compounds were newly synthesized. These two new compounds include the pyrane subunit of the native molybdopterin ligand and should therefore be even better models for the active site of the molybdopterin containing enzymes. The molybdenum/tungsten pair with these new ligands shows a remarkably small difference for the redox potentials of the transition M(IV) <--> M(V) of only 30 mV at 25 degrees C and the reversion of the usual order with higher potentials for the molybdenum than the tungsten compound at a temperature of 70 degrees C; a temperature that is in the range where usually tungsten containing enzymes instead of molybdenum containing ones are found.

Tri- and Pentanuclear Tungsten-(μ-S)-M Clusters (M = W, Cu, Ag)

The thiotungstate [Et4N]2[OW(WS4)2], [Et4N]2.1, containing the linear [[S2W(VI)(mu-S)2]2W(IV)=O] core, was prepared from [Et4N]2[WS4] in the presence of the sulfide scavenger Cd2+. Addition of 1,2-bis(o-diphenylphosphinophenyl)ethane (diphosphine) and Cu+ or Ag+ to solutions of 1 in MeCN/DMF led to coordination of the (diphosphine)Cu/Ag fragments to the terminal sulfido ligands of 1, yielding novel linear pentanuclear, heterometallic clusters [mu-[OW(IV)(DMF)(W(VI)S4)2][M(diphosphine)]2], 2 (M = Cu) and 3 (M = Ag). Along with 2, the trinuclear cluster [[mu-(W(VI)S4)[Cu(diphosphine)(2)]], 4, was also obtained. The molecular and crystal structures of [Et4N]2.1, 2.MeCN, 3.MeCN, and 4.2MeCN.CH2Cl2 have been determined.

The reduction of tris-dithiolene complexes of molybdenum(vi) and tungsten(vi) by hydroxide ion: kinetics and mechanism

The kinetic study of the spontaneous reduction of some neutral tris-dithiolene complexes [ML3] of molybdenum(VI) and tungsten(VI), (L = S2C6H4(2-), S2C6H3CH3(2-) and S2C2(CH3)2(2-); M = Mo or W) by tetrabutylammonium hydroxide in tetrahydrofuran-water solutions demonstrates that OH- is an effective reductant. Their reduction is fast, clean and quantitative. Depending upon both the molar ratio in which the reagents are mixed and the amount of water present, one- or two-electron reductions of these tris-dithiolene complexes were observed. If Bu4NOH is present in low concentration or/and at high concentrations of water, the total transformation of the neutral M(VI) complex into the monoanionic M(V) complex is the only observed process. Stopped-flow kinetic data for this reaction are consistent with the rate law: -d[ML3]/dt = d[ML3-]/dt = k[ML3][Bu4NOH]. The proposed mechanism involves nucleophilic attack of OH- to form a mono-anionic seven-coordinate intermediate [ML3OH]-, which interacts with another molecule of [ML3] to generate the monoanionic complex [ML3]- transfering the oxygen from coordinated OH- to water. Hydrogen peroxide was identified as the reaction product. The molybdenum complexes are more difficult to reduce than their corresponding tungsten complexes, and the values of k obtained for the molybdenum and tungsten series of complexes increase as the ene-1,2-dithiolate ligand becomes more electron-withdrawing (S2C6H4(2-) > S2C6H3CH3(2-) > S2C2(CH3)2(2-)). This investigation constitutes the only well-established interaction between hydroxide ion and a tris(dithiolene) complex, and supports a highly covalent bonding interaction between the metal and the hydroxide ion that modulates electron transfer reactions within these complexes.

"Non-VSEPR" Structures and Bonding in d(0) Systems

Under certain circumstances, metal complexes with a formal d(0) electronic configuration may exhibit structures that violate the traditional structure models, such as the VSEPR concept or simple ionic pictures. Some examples of such behavior, such as the bent gas-phase structures of some alkaline earth dihalides, or the trigonal prismatic coordination of some early transition metal chalcogenides or pnictides, have been known for a long time. However, the number of molecular examples for "non-VSEPR" structures has increased dramatically during the past decade, in particular in the realm of organometallic chemistry. At the same time, various theoretical models have been discussed, sometimes controversially, to explain the observed, unusual structures. Many d(0) systems are important in homogeneous and heterogeneous catalysis, biocatalysis (e.g. molybdenum or tungsten enzymes), or materials science (e.g. ferroelectric perovskites or zirconia). Moreover, their electronic structure without formally nonbonding d orbitals makes them unique starting points for a general understanding of structure, bonding, and reactivity of transition metal compounds. Here we attempt to provide a comprehensive view, both of the types of deviations of d(0) and related complexes from regular coordination arrangements, and of the theoretical framework that allows their rationalization. Many computational and experimental examples are provided, with an emphasis on homoleptic mononuclear complexes. Then the factors that control the structures are discussed in detail. They are a) metal d orbital participation in sigma bonding, b) polarization of the outermost core shells, c) ligand repulsion, and d) pi bonding. Suggestions are made as to which of the factors are the dominant ones in certain situations. In heteroleptic complexes, the competition of sigma and pi bonding of the various ligands controls the structures in a complicated fashion. Some guidelines are provided that should help to better understand the interrelations. Bent's rule is of only very limited use in these types of systems, because of the paramount influence of pi bonding. Finally, computed and measured structures of multinuclear complexes are discussed, including possible consequences for the properties of bulk solids.

Synthesis and reactivity studies of model complexes for molybdopterin-dependent enzymes

The molybdenum cofactor (Moco)-containing enzymes are divided into three classes that are named after prototypical members of each family, viz. sulfite oxidase, DMSO reductase and xanthine oxidase. Functional or structural models have been prepared for these three prototypical enzymes: (i) The complex [MoO2(mnt)2]2- (mnt2- = 1,2-dicyanoethylenedithiolate) has been found to be able to oxidize hydrogen sulfite to HSO4- and is thus a functional model of sulfite oxidase. Kinetic and computational studies indicate that the reaction proceeds via attack of the substrate at one of the oxo ligands of the complex, rather than at the metal. (ii) The coordination geometries of the mono-oxo [Mo(VI)(O-Ser)(S2)2] entity (S2 = dithiolene moiety of molybdopterin) found in the crystal structure of R. sphaeroides DMSO reductase and the corresponding des-oxo Mo(IV) unit have been reproduced in the complexes [M(VI)O(OSiR3)(bdt)2] and [M(VI)O(OSiR3)(bdt)2] (M = Mo,W; bdt = benzene dithiolate). (iii) A facile route has been developed for the preparation of complexes containing a cis-Mo(VI)OS molybdenum oxo, sulfido moiety similar to that detected in the oxidized form of xanthine oxidase.

Synthesis and structures of bis(dithiolene)-tungsten(IV) complexes related to the active sites of tungstoenzymes

Recent protein crystallographic results on tungsten enzymes and primary sequence relationships between certain molybdenum and tungsten enzymes provoke interest in the generalized bis(dithiolene) complexes [WIV(QR)(S2C2R'2)2]1- and [WVIO(QR)(S2C2R'2)2]1- (Q = O, S, Se) as minimal representations of enzyme sites. The existence and stability of W(IV) complexes have been explored by synthesis. Reaction of [W(CO)2(S2C2Me2)2] (1) with PhO- results in complete CO substitution to give [W(OPh)(S2C2Me2)2]1- (2). Reaction of 1 with PhQ- affords the monocarbonyls [W(CO)(QPh)(S2C2Me2)2]1- (Q = S (3), Se (5)). The use of sterically demanding 2,4,6-Pri3C6H2Q- also yields monocarbonyls, [W(CO)(QC6H2-2,4,6-Pri3)(S2C2Me2)2]1- (Q = S (4), Se (6)). The X-ray structures of square pyramidal 2 and trigonal prismatic 3-6 (with unidentate ligands cis) are described. The tendency to substitute one or both carbonyl ligands in 1 in the formation of [MIV(QAr)(S2C2Me2)2]1- and [MIV(CO)(QAr)(SeC2Me2)2]1- with M = Mo and W is related to the M-Q bond length and ligand steric demands. The results demonstrate a stronger binding of CO by W(IV) than Mo(IV), a behavior previously demonstrated by thermodynamic and kinetic features of zerovalent carbonyl complexes. Complexes 3-6 can be reversibly reduced to W(III) at approximately -1.5 V versus SCE. On the basis of the potential for 2(-2.07 V), monocarbonyl ligation stabilizes W(III) by approximately 500 mV. This work is part of a parallel investigation of the chemistry of bis(dithiolene)-molybdenum (Lim, B. S.; Donahue, J. P.; Holm, R. H. Inorg. Chem. 2000, 39, 263) and -tungsten complexes related to enzyme active sites.

Generation and biomimetic chemistry of tungsten-dithiolene complexes containing the hydrotris(3,5-dimethylpyrazol-1-yl)borate ligand

Reactions of bis(thio)-W(VI) complexes, LWS2X (L = hydrotris (3,5-dimethylpyrazol-1-yl)borate, X = monoanion), with alkynes produce dithiolene complexes, LWX(dithiolene). The synthesis and characterization of orange LW(OPh){S2C2(CO2Me)2} (1) and burgundyred LW(SePh) {S2C2(Ph)(2-quinoxalinyl)} (2) and the X-ray crystal structure of 1.0.5CH2Cl2, are described in detail. Crystals of 1.0.5CH2Cl2 are orthorhombic, space group Pbcn, with a = 29.826(6), b = 13.291(4), c = 16.078(4) A, V = 6373(5) A3, and Z = 8. The six-coordinate, distorted-octahedral complex features a tridentate L ligand, a monodentate phenoxide ligand, and a bidentate dithiolene ligand. The short W-S bonds (2.267(4) and 2.279(4) A) and the parameters associated with the phenoxide ligand (W-O = 1.850(8) A, W-O-C = 146(1) degree), point to a considerable degree of W-ligand multiple bonding in the [W(OPh)(dithiolene)]+ unit. For 2, W-Se and average W-S distances of 2.49(2) A and 2.30(2) A, respectively, have been obtained from EXAFS studies. The formation of yellow 3,3'-dithiobis[2-(phenyl)thieno[2,3-b]quinoxaline] (3) upon oxidation of 2 supports the likely generation of urothione upon oxidative degradation of molybdopterin-containing tungsten enzymes from hyperthermophilic organisms.

Crystal structure of the first dissimilatory nitrate reductase at 1.9 A solved by MAD methods

BACKGROUND

The periplasmic nitrate reductase (NAP) from the sulphate reducing bacterium Desulfovibrio desulfuricans ATCC 27774 is induced by growth on nitrate and catalyses the reduction of nitrate to nitrite for respiration. NAP is a molybdenum-containing enzyme with one bis-molybdopterin guanine dinucleotide (MGD) cofactor and one [4Fe-4S] cluster in a single polypeptide chain of 723 amino acid residues. To date, there is no crystal structure of a nitrate reductase.

RESULTS

The first crystal structure of a dissimilatory (respiratory) nitrate reductase was determined at 1.9 A resolution by multiwavelength anomalous diffraction (MAD) methods. The structure is folded into four domains with an alpha/beta-type topology and all four domains are involved in cofactor binding. The [4Fe-4S] centre is located near the periphery of the molecule, whereas the MGD cofactor extends across the interior of the molecule interacting with residues from all four domains. The molybdenum atom is located at the bottom of a 15 A deep crevice, and is positioned 12 A from the [4Fe-4S] cluster. The structure of NAP reveals the details of the catalytic molybdenum site, which is coordinated to two MGD cofactors, Cys140, and a water/hydroxo ligand. A facile electron-transfer pathway through bonds connects the molybdenum and the [4Fe-4S] cluster.

CONCLUSIONS

The polypeptide fold of NAP and the arrangement of the cofactors is related to that of Escherichia coli formate dehydrogenase (FDH) and distantly resembles dimethylsulphoxide reductase. The close structural homology of NAP and FDH shows how small changes in the vicinity of the molybdenum catalytic site are sufficient for the substrate specificity.

Crystal structure of formate dehydrogenase H: catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster

Formate dehydrogenase H from Escherichia coli contains selenocysteine (SeCys), molybdenum, two molybdopterin guanine dinucleotide (MGD) cofactors, and an Fe4S4 cluster at the active site and catalyzes the two-electron oxidation of formate to carbon dioxide. The crystal structures of the oxidized [Mo(VI), Fe4S4(ox)] form of formate dehydrogenase H (with and without bound inhibitor) and the reduced [Mo(IV), Fe4S4(red)] form have been determined, revealing a four-domain alphabeta structure with the molybdenum directly coordinated to selenium and both MGD cofactors. These structures suggest a reaction mechanism that directly involves SeCys140 and His141 in proton abstraction and the molybdenum, molybdopterin, Lys44, and the Fe4S4 cluster in electron transfer.