Helical Foldamers Incorporating Photoswitchable Residues for Light-Mediated Modulation of Conformational Preference

Interfacing native and non-native peptides: using Affimers to recognise α-helix mimicking foldamers

Selection methods are used to identify Affimers that recognise α-helix mimicking N-alkylated aromatic oligoamides thus demonstrating foldamer and natural α-amino acid codes are compatible.

Conformational preferences and isomerization upon excitation/ionization of 2-methoxypyridine and 2-N-methylaminopyridine

Conformers from the rotations of the methyl group and the methoxy or methylamino group, namely staggered (s)/eclipsed (e)-cis/trans 2-methoxypyridine (2MOP) and 2-N-methylaminopyridine (2NMP), are studied using theoretical calculations in combination with one-color resonance-enhanced two-photon ionization (1C-R2PI) and mass-analyzed threshold ionization (MATI) spectroscopies. The calculations predict that, for cis 2MOP, trans 2MOP and trans 2NMP, only the s conformers are stable in the S₀, S₁ and D₀ states. However, for cis 2NMP, the stable conformer is staggered in the S₀ state but eclipsed in the S₁ and D₀ states, indicating an isomerization upon the excitation or ionization from the S₀ state. This is experimentally supported by the 1C-R2PI and MATI spectra of 2NMP. Due to the relative instability, the number density of trans 2MOP is too low in the sample to be detected. All the bands in the 1C-R2PI and MATI spectra of 2MOP are assigned to s-cis 2MOP. The energy differences between cis and trans conformers are derived from excitation and ionization energies, indicating another conformational isomerization: stable trans 2NMP in the S₀ and S₁ states but stable cis 2NMP in the D₀ state. For 2MOP, the so-called syn preference previously found for the S₀ state is also observed in the S₁ and D₀ states. The conformational preference and isomerization are discussed with natural bond orbital calculations and reduced density gradient analysis. For 2MOP, the syn preferences are mainly caused by the exchange repulsion among several σ-orbitals of the OCH₃ group and the pyridine ring. While the relative stabilities of the s and e conformers of cis 2MOP and cis 2NMP are simultaneously influenced by steric repulsion and orbital interactions.

Self-assembly of small-molecule fumaramides allows transmembrane chloride channel formation

Intermolecular hydrogen bonding of N¹,N⁴-dicyclohexylfumaramide favors the formation of self-assembled ion channels, which facilitates selective Cl⁻ transport across a lipid bilayer membrane.

Self-Assembly of Conjugated Metallopolymers with Tunable Length and Controlled Regiochemistry

Self-assembled materials can be designed to express useful optoelectronic properties; however, achieving structural control is a necessary precondition for the optimization of desired properties. Here we report a simple, metal-templated polymerization process that generates helical metallopolymer strands over 75 repeat units long (28 kDa) from a single bifunctional monomer and Cu^I . The resulting polymer consists of a double helix of two identical conjugated organic strands enclosing a central column of metal ions. The length of this metallopolymer can be controlled by adding monofunctional subcomponents to end-cap the conjugated ligands. The use of ditopic and bulky monotopic subcomponents, respectively, allows a head-to-head or head-to-tail double helix to be generated. Spectroscopic measurements of different polymer lengths demonstrate how control over polymer length leads to control over the electronic and luminescent properties of the resulting material, thereby enabling tunable white-light emission.

Diversity of Secondary Structure in Catalytic Peptides with β-Turn-Biased Sequences

X-ray crystallography has been applied to the structural analysis of a series of tetrapeptides that were previously assessed for catalytic activity in an atroposelective bromination reaction. Common to the series is a central Pro-Xaa sequence, where Pro is either l- or d-proline, which was chosen to favor nucleation of canonical β-turn secondary structures. Crystallographic analysis of 35 different peptide sequences revealed a range of conformational states. The observed differences appear not only in cases where the Pro-Xaa loop-region is altered, but also when seemingly subtle alterations to the flanking residues are introduced. In many instances, distinct conformers of the same sequence were observed, either as symmetry-independent molecules within the same unit cell or as polymorphs. Computational studies using DFT provided additional insight into the analysis of solid-state structural features. Select X-ray crystal structures were compared to the corresponding solution structures derived from measured proton chemical shifts, 3J-values, and 1H-1H-NOESY contacts. These findings imply that the conformational space available to simple peptide-based catalysts is more diverse than precedent might suggest. The direct observation of multiple ground state conformations for peptides of this family, as well as the dynamic processes associated with conformational equilibria, underscore not only the challenge of designing peptide-based catalysts, but also the difficulty in predicting their accessible transition states. These findings implicate the advantages of low-barrier interconversions between conformations of peptide-based catalysts for multistep, enantioselective reactions.

Dibenzazepinyl ureas as dual NMR and CD probes of helical screw-sense preference in conformationally equilibrating dynamic foldamers

Dibenzazepinyl ureas act as probes to allow conformational analysis of screw-sense preference in dynamic foldamers by both NMR and CD spectroscopy.

Photochromic switching behaviour of donor–acceptor Stenhouse adducts in organic solvents

We report photochromic donor–acceptor Stenhouse adducts (DASAs) capable of fully reversible photoisomerization with visible light in organic solvents including chloroform, acetonitrile and benzene.