51
|
Asakawa D, Chen LC, Hiraoka K. The analysis of industrial synthetic polymers by electrospray droplet impact/secondary ion mass spectrometry. JOURNAL OF MASS SPECTROMETRY : JMS 2009; 44:945-951. [PMID: 19266539 DOI: 10.1002/jms.1569] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Electrospray droplet impact (EDI)/secondary ion mass spectrometry (SIMS) is a new desorption/ionization technique for mass spectrometry in which highly charged water clusters produced from the atmospheric-pressure electrospray are accelerated in vacuum by several kV and impact the sample deposited on the metal substrate. In this study, several industrial synthetic polymers, e.g. polystyrene (PS) and polyethylene glycol (PEG) were analyzed by EDI/SIMS mass spectrometry. For higher molecular weight analytes, e.g. PS4000 and PEG4600, EDI/SIMS mass spectra could be obtained when cationization salts are added. For the polymers of lower molecular weights, e.g. PEG300 and PEG600, they could be readily detected as protonated ions without the addition of cationization agents. Anionized PS was also observed in the negative ion mode of operation when acetic acid was added to the charged droplet. Compared to matrix-assisted laser desorption/ionization (MALDI), ion signal distribution with lower background signals could be obtained particularly for the low-molecular weight polymers.
Collapse
Affiliation(s)
- Daiki Asakawa
- Clean Energy Research Center, University of Yamanashi, Takeda-4, Kofu, 400-8511, Japan
| | | | | |
Collapse
|
52
|
Paruch R, Rzeznik L, Czerwinski B, Garrison BJ, Winograd N, Postawa Z. Molecular dynamics simulations of sputtering of Langmuir-Blodgett multilayers by keV C(60) projectiles. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2009; 113:5641. [PMID: 20174461 PMCID: PMC2822397 DOI: 10.1021/jp809769q] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Coarse-grained molecular dynamics computer simulations are applied to investigate fundamental processes induced by an impact of keV C(60) projectile at an organic overlayer composed of long, well-organized linear molecules. The energy transfer pathways, sputtering yields, and the damage induced in the irradiated system, represented by a Langmuir-Blodgett (LB) multilayers composed from molecules of bariated arachidic acid, are investigated as a function of the kinetic energy and impact angle of the projectile and the thickness of the organic system. In particular, the unique challenges of depth profiling through a LB film vs. a more isotropic solid are discussed.The results indicate that the trajectories of projectile fragments and, consequently, the primary energy can be channeled by the geometrical structure of the overlayer. Although, a similar process is known from sputtering of single crystals by atomic projectiles, it has not been anticipated to occur during C(60) bombardment due to the large size of the projectile. An open and ordered molecular structure of LB films is responsible for such behavior. Both the extent of damage and the efficiency of sputtering depend on the kinetic energy, the impact angle, and the layer thickness. The results indicate that the best depth profiling conditions can be achieved with low-energy cluster projectiles irradiating the organic overlayer at large off-normal angles.
Collapse
Affiliation(s)
- R. Paruch
- Smoluchowski Institute of Physics, Jagiellonian University, ul. Reymonta 4, 30-059 Kraków, Poland
| | - L. Rzeznik
- Smoluchowski Institute of Physics, Jagiellonian University, ul. Reymonta 4, 30-059 Kraków, Poland
| | - B. Czerwinski
- Smoluchowski Institute of Physics, Jagiellonian University, ul. Reymonta 4, 30-059 Kraków, Poland
| | - B. J. Garrison
- Department of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA
| | - N. Winograd
- Department of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA
| | - Z. Postawa
- Smoluchowski Institute of Physics, Jagiellonian University, ul. Reymonta 4, 30-059 Kraków, Poland
| |
Collapse
|
53
|
Garrison BJ, Postawa Z, Ryan KE, Vickerman JC, Webb RP, Winograd N. Internal energy of molecules ejected due to energetic C60 bombardment. Anal Chem 2009; 81:2260-7. [PMID: 19228010 PMCID: PMC2666284 DOI: 10.1021/ac802399m] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The early stages of C(60) bombardment of octane and octatetraene crystals are modeled using molecular dynamics simulations with incident energies of 5-20 keV. Using the AIREBO potential, which allows for chemical reactions in hydrocarbon molecules, we are able to investigate how the projectile energy is partitioned into changes in potential and kinetic energy as well as how much energy flows into reacted molecules and internal energy. Several animations have been included to illustrate the bombardment process. The results show that the material near the edge of the crater can be ejected with low internal energies and that ejected molecules maintain their internal energies in the plume, in contrast to a collisional cooling mechanism previously proposed. In addition, a single C(60) bombardment was able to create many free and reacted H atoms which may aid in the ionization of molecules upon subsequent bombardment events.
Collapse
Affiliation(s)
- Barbara J Garrison
- Department of Chemistry, 104 Chemistry Building, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
| | | | | | | | | | | |
Collapse
|
54
|
Three-dimensional depth profiling of molecular structures. Anal Bioanal Chem 2009; 393:1835-42. [PMID: 19153718 DOI: 10.1007/s00216-008-2596-5] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2008] [Revised: 12/10/2008] [Accepted: 12/16/2008] [Indexed: 10/21/2022]
Abstract
Molecular time of flight secondary ion mass spectrometry (ToF-SIMS) imaging and cluster ion beam erosion are combined to perform a three-dimensional chemical analysis of molecular films. The resulting dataset allows a number of artifacts inherent in sputter depth profiling to be assessed. These artifacts arise from lateral inhomogeneities of either the erosion rate or the sample itself. Using a test structure based on a trehalose film deposited on Si, we demonstrate that the "local" depth resolution may approach values which are close to the physical limit introduced by the information depth of the (static) ToF-SIMS method itself.
Collapse
|
55
|
ASAKAWA D, HASHIMOTO Y, HIRAOKA K. Determination of Dynamic Ranges for Quantitative Analysis Using Electrospray Droplet Impact Ionization and Matrix-Assisted Laser Desorption Ionization. ACTA ACUST UNITED AC 2009. [DOI: 10.5702/massspec.57.81] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
56
|
Kozole J, Willingham D, Winograd N. The effect of incident angle on the C(60) bombardment of molecular solids. APPLIED SURFACE SCIENCE 2008; 255:1068-1070. [PMID: 19554201 PMCID: PMC2700760 DOI: 10.1016/j.apsusc.2008.05.254] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
The effect of incident angle on the quality of SIMS molecular depth profiling using C(60) (+) was investigated. Cholesterol films of ~300 nm thickness on Si were employed as a model and were eroded using 40 keV C(60) (+) at an incident angle of 40° and 73° with respect to the surface normal. The erosion process was characterized by determining at each angle the relative amount of chemical damage, the total sputtering yield of cholesterol molecules, and the interface width between the film and the Si substrate. The results show that there is less molecule damage at an angle of incidence of 73° and that the total sputtering yield is largest at an angle of incidence of 40°. The measurements suggest reduced damage is not necessarily dependent upon enhanced yields and that depositing the incident energy nearer the surface by using glancing angles is most important. The interface width parameter supports this idea by indicating that at the 73° incident angle, C(60) (+) produces a smaller altered layer depth. Overall, the results show that 73° incidence is the better angle for molecular depth profiling using 40 keV C(60) (+).
Collapse
Affiliation(s)
- Joseph Kozole
- Department of Chemistry, Penn State University, University Park, PA 16802, United States
| | - David Willingham
- Department of Chemistry, Penn State University, University Park, PA 16802, United States
| | - Nicholas Winograd
- Department of Chemistry, Penn State University, University Park, PA 16802, United States
| |
Collapse
|
57
|
Nieuwjaer N, Poleunis C, Delcorte A, Bertrand P. Depth profiling of polymer samples using Ga+
and C60
+
ion beams. SURF INTERFACE ANAL 2008. [DOI: 10.1002/sia.2931] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
|
58
|
Zheng L, Wucher A, Winograd N. Depth resolution during C60+ profiling of multilayer molecular films. Anal Chem 2008; 80:7363-71. [PMID: 18778034 PMCID: PMC2880170 DOI: 10.1021/ac801056f] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Time-of-flight secondary ion mass spectrometry is utilized to characterize the response of Langmuir-Blodgett (LB) multilayers under the bombardment by buckminsterfullerene primary ions. The LB multilayers are formed by barium arachidate and barium dimyristoyl phosphatidate on a Si substrate. The unique sputtering properties of the C60 ion beam result in successful molecular depth profiling of both the single component and multilayers of alternating chemical composition. At cryogenic (liquid nitrogen) temperatures, the high mass signals of both molecules remain stable under sputtering, while at room temperature, they gradually decrease with primary ion dose. The low temperature also leads to a higher average sputter yield of molecules. Depth resolution varies from 20 to 50 nm and can be reduced further by lowering the primary ion energy or by using glancing angles of incidence of the primary ion beam.
Collapse
Affiliation(s)
- Leiliang Zheng
- Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| | - Andreas Wucher
- Physics Department, University of Duisburg–Essen, Duisburg, 47048 Germany
| | - Nicholas Winograd
- Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| |
Collapse
|
59
|
Kozole J, Wucher A, Winograd N. Energy deposition during molecular depth profiling experiments with cluster ion beams. Anal Chem 2008; 80:5293-301. [PMID: 18549239 PMCID: PMC2553714 DOI: 10.1021/ac8002962] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The role of the location of energy deposition during cluster ion bombardment on the quality of molecular depth profiling was examined by varying the incident angle geometry. Cholesterol films approximately 300 nm in thickness deposited onto silicon substrates were eroded using 40-keV C60(+) at incident angles ranging from 5 degrees to 73 degrees with respect to the surface normal. The erosion process was evaluated by determining at each incident angle the total sputtering yield of cholesterol molecules, the damage cross section of the cholesterol molecules, the altered layer thickness within the solid, the sputter yield decay in the quasi-steady-state sputter regime, and the interface width between the cholesterol film and the silicon substrate. The results show that the total sputtering yield is largest relative to the product of the damage cross section and the altered layer thickness at 73 degrees incidence, suggesting that the amount of chemical damage accumulated is least when glancing incident geometries are used. Moreover, the signal decay in the quasi-steady-state sputter regime is observed to be smallest at off-normal and glancing incident geometries. To elucidate the signal decay at near-normal incidence, an extension to an erosion model is introduced in which a fluence-dependent decay in sputter yield is incorporated for the quasi-steady-state regime. Last, interface width calculations indicate that at glancing incidence the damaged depth within the solid is smallest. Collectively, the measurements suggest that decreased chemical damage is not necessarily dependent upon an increased sputter yield or a decreased damage cross section but instead dependent upon depositing the incident energy nearer the solid surface resulting in a smaller altered layer thickness. Hence, glancing incident angles are best suited for maintaining chemical information during molecular depth profiling using 40-keV C60(+).
Collapse
Affiliation(s)
- Joseph Kozole
- Department of Chemistry, Penn State University, 104 Chemistry Building, University Park, Pennsylvania 16802, USA
| | | | | |
Collapse
|
60
|
Garrison BJ, Postawa Z. Computational view of surface based organic mass spectrometry. MASS SPECTROMETRY REVIEWS 2008; 27:289-315. [PMID: 18421766 DOI: 10.1002/mas.20165] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Surface based mass spectrometric approaches fill an important niche in the mass analysis portfolio of tools. The particular niche depends on both the underlying physics and chemistry of molecule ejection as well as experimental characteristics. In this article, we use molecular dynamics computer simulations to elucidate the fundamental processes giving rise to ejection of organic molecules in atomic and cluster secondary ion mass spectrometry (SIMS), massive cluster impact (MCI) mass spectrometry, and matrix-assisted laser desorption ionization (MALDI) mass spectrometry. This review is aimed at graduate students and experimental researchers.
Collapse
Affiliation(s)
- Barbara J Garrison
- Department of Chemistry, Penn State University, 104 Chemistry Building, University Park, Pennsylvania 16802, USA.
| | | |
Collapse
|
61
|
Milillo TM, Gardella JA. Spatial Analysis of Time of Flight−Secondary Ion Mass Spectrometric Images by Ordinary Kriging and Inverse Distance Weighted Interpolation Techniques. Anal Chem 2008; 80:4896-905. [DOI: 10.1021/ac702640v] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tammy M. Milillo
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260
| | - Joseph A. Gardella
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260
| |
Collapse
|
62
|
Ryan KE, Garrison BJ. Energy deposition control during cluster bombardment: a molecular dynamics view. Anal Chem 2008; 80:5302-6. [PMID: 18522431 DOI: 10.1021/ac800287k] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Molecular dynamics simulations are performed to model C60 and Au3 bombardment of a molecular solid, benzene, in order to understand the energy deposition placement as a function of incident kinetic energy and incident angle. Full simulations are performed for 5 keV projectiles, and the yields are calculated. For higher energies, 20 and 40 keV, the mesoscale energy deposition footprint model is employed to predict trends in yield. The damage accumulation is discussed in relationship to the region where energy is deposited to the sample. The simulations show that the most favorable conditions for increasing the ejection yield and decreasing the damage accumulation are when most of the projectile energy is deposited in the near-surface region. For molecular organic solids, grazing angles are the best choice for achieving these conditions.
Collapse
Affiliation(s)
- Kathleen E Ryan
- Department of Chemistry, 104 Chemistry Building, Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | | |
Collapse
|
63
|
Zheng L, Wucher A, Winograd N. Chemically alternating Langmuir-Blodgett thin films as a model for molecular depth profiling by mass spectrometry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2008; 19:96-102. [PMID: 18293488 PMCID: PMC2553707 DOI: 10.1016/j.jasms.2007.10.020] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Langmuir-Blodgett multilayers of alternating barium arachidate and barium dimyristoyl phosphatidate are characterized by secondary ion mass spectrometry employing a 40 keV buckminsterfullerene (C60) ion source. These films exhibit well-defined structures with minimal chemical mixing between layers, making them an intriguing platform to study fundamental issues associated with molecular depth profiling. The experiments were performed using three different substrates of 306 nm, 177 nm, and 90 nm in thickness, each containing six subunits with alternating chemistry. The molecular subunits are successfully resolved for the 306 nm and 177 nm films by cluster ion depth profiling at cryogenic temperatures. In the depth profile, very little degradation was found for the molecular ion signal of the underneath layers compared with that of the top layer, indicating that the formation of chemical damage is removed as rapidly as it is formed. The resolving power decreases as the thickness of the alternating subunits decrease, allowing a depth resolution of 20 to 25 nm to be achieved. The results show the potential of LB films as an experimental model system for studying fundamental features of molecular depth profiling.
Collapse
Affiliation(s)
- Leiliang Zheng
- Department of Chemistry, The Pennsylvania State University, University Park 16802, USA.
| | | | | |
Collapse
|
64
|
MORI K, HIRAOKA K. Internal Energy Transfer to Secondary Ions in Electrospray Droplet Impact/Secondary Ion Mass Spectrometry. ACTA ACUST UNITED AC 2008. [DOI: 10.5702/massspec.56.33] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
65
|
Biddulph GX, Piwowar AM, Fletcher JS, Lockyer NP, Vickerman JC. Properties of C84 and C24H12 molecular ion sources for routine TOF-SIMS analysis. Anal Chem 2007; 79:7259-66. [PMID: 17822312 DOI: 10.1021/ac071442x] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
C84+ and coronene (C24H12+) have been studied as primary ions for use in secondary ion mass spectrometry. A representative range of samples has been used to compare the effectiveness of each primary ion with the existing C60+, Au+, and Au3+ primary ions. It was found that C84 is the most effective primary ion providing higher secondary ion yields and a high molecular to fragment ion ratio. Coronene had a performance similar to C60. Coronene and C60 primary ions were also used to extend a previous study of matrix suppression/enhancement effects. The C60 was found to ameliorate this effect, possibly due to the increase in protonation in polyatomic sputtering, and coronene was found to further reduce suppression showing evidence of a chemical effect.
Collapse
Affiliation(s)
- Gregory X Biddulph
- Manchester Interdisciplinary Biocentre, University of Manchester, Manchester, M1 7DN, UK
| | | | | | | | | |
Collapse
|
66
|
Abstract
Imaging mass spectrometry combines the chemical specificity and parallel detection of mass spectrometry with microscopic imaging capabilities. The ability to simultaneously obtain images from all analytes detected, from atomic to macromolecular ions, allows the analyst to probe the chemical organization of a sample and to correlate this with physical features. The sensitivity of the ionization step, sample preparation, the spatial resolution, and the speed of the technique are all important parameters that affect the type of information obtained. Recently, significant progress has been made in each of these steps for both secondary ion mass spectrometry (SIMS) and matrix-assisted laser desorption/ionization (MALDI) imaging of biological samples. Examples demonstrating localization of proteins in tumors, a reduction of lamellar phospholipids in the region binding two single celled organisms, and sub-cellular distributions of several biomolecules have all contributed to an increasing upsurge in interest in imaging mass spectrometry. Here we review many of the instrumental developments and methodological approaches responsible for this increased interest, compare and contrast the information provided by SIMS and MALDI imaging, and discuss future possibilities.
Collapse
Affiliation(s)
- Liam A McDonnell
- FOM Institute for Atomic and Molecular Physics, Kruislaan 407, 1098 SJ Amsterdam, The Netherlands
| | | |
Collapse
|
67
|
Fletcher JS, Conlan XA, Jones EA, Biddulph G, Lockyer NP, Vickerman JC. TOF-SIMS analysis using C60. Effect of impact energy on yield and damage. Anal Chem 2007; 78:1827-31. [PMID: 16536417 DOI: 10.1021/ac051624w] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
C60 has been shown to give increased sputter yields and, hence, secondary ions when used as a primary particle in SIMS analysis. In addition, for many samples, there is also a reduction in damage accumulation following continued bombardment with the ion beam. In this paper, we report a study of the impact energy (up to 120 keV) of C60 on the secondary ion yield from a number of samples with consideration of any variation in yield response over mass ranges up to m/z 2000. Although increased impact energy is expected to produce a corresponding increase in sputter yield/rate, it is important to investigate any increase in sample damage with increasing energy and, hence, efficiency of the ion beams. On our test samples including a metal, along with organic samples, there is a general increase in secondary ion yield of high-mass species with increasing impact energy. A corresponding reduction in the formation of low-mass fragments is also observed. Depth profiling of organic samples demonstrates that when using C60, there does not appear to be any increase in damage evident in the mass spectra as the impact energy is increased.
Collapse
Affiliation(s)
- John S Fletcher
- Surface Analysis Research Centre, School of Chemical Engineering and Analytical Science, The University of Manchester, Manchester M60 1QD, UK.
| | | | | | | | | | | |
Collapse
|
68
|
Delcorte A, Yunus S, Wehbe N, Nieuwjaer N, Poleunis C, Felten A, Houssiau L, Pireaux JJ, Bertrand P. Metal-assisted secondary ion mass spectrometry using atomic (Ga+, In+) and fullerene projectiles. Anal Chem 2007; 79:3673-89. [PMID: 17417819 DOI: 10.1021/ac062406l] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The advantages and drawbacks of using either monatomic or buckminsterfullerene primary ions for metal-assisted secondary ion mass spectrometry (MetA-SIMS) are investigated using a series of organic samples including additive molecules, polyolefins, and small peptides. Gold deposition is mostly performed by sputter-coating, and in some cases, the results are compared to those of thermal evaporation (already used in a previous article: Delcorte, A.; Médard, N.; Bertrand, P. Anal. Chem. 2002, 74, 4955). The microstructure of the gold-covered sample surfaces is assessed by scanning and transmission electron microscopies. The merits of the different sets of experimental conditions are established via the analysis of fragment and parent-like ion yields. For most of the analyzed samples, the highest yields of fragment and parent-like ions are already reached with the sole use of C60+ projectiles. Metallization of the sample does not lead to a significant additional enhancement. For polyethylene and polypropylene, however, gold metallization associated with Ga+/In+ projectiles appears to be the only way to observe large cationized, sample-specific chain segments (m/z approximately 1000-2000). A detailed study of the polypropylene mass spectra as a function of gold coverage shows that the dynamics of yield enhancement by metal nanoparticles is strongly dependent on the choice of the projectile, e.g., a pronounced increase with Ga+ and a slow decay with C60+. The cases of Irganox 1010, a polymer antioxidant, and leucine enkephalin, a small peptide, allow us to investigate the specific influence of the experimental conditions on the emission of parent(like) ions such as M+, (M + Na)+, and (M + Au)+. The results show a dependence on both the type of sample and the considered secondary ion. Using theoretical and experimental arguments, the discussion identifies some of the mechanisms underlying the general trends observed in the results. Guidelines concerning the choice of the experimental conditions for MetA-SIMS are provided.
Collapse
Affiliation(s)
- A Delcorte
- PCPM, Université Catholique de Louvain, Croix du Sud 1, B-1348 Louvain-la-Neuve, Belgium.
| | | | | | | | | | | | | | | | | |
Collapse
|
69
|
Smiley EJ, Winograd N, Garrison BJ. Effect of cluster size in kiloelectronvolt cluster bombardment of solid benzene. Anal Chem 2007; 79:494-9. [PMID: 17222012 DOI: 10.1021/ac061531u] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Emission of benzene molecules by 5-keV cluster bombardment of a range of carbon projectiles from C6H6 to C180 is studied by a coarse-grained molecular dynamics (MD) technique. This approach permits calculations that are not feasible using more complicated potential energy functions, particularly as the interesting physics associated with the ion impact event approaches the mesoscale. These calculations show that the highest ejection yields are associated with clusters that deposit their incident energy 15-20 A below the surface. The highest yield for the projectiles is produced by the C20 and C60 projectiles. The results from the MD simulations are also compared favorably to an analytical model based on fluid dynamics to describe the energy deposition. The analytical model is then utilized to extend the range of the calculations to higher incident energies. The issue of the relative amount of chemical fragmentation and intact molecular desorption is also examined for the benzene crystal. These results show that damage accumulation at high-incident fluence should not be problematic and that it should be possible to perform molecular depth profiling via secondary ion mass spectrometry experiments. In general, the approach presented here illustrates the power of combining a simplified MD method with analytical strategies for describing a length scale that is difficult to achieve with traditional MD calculations.
Collapse
Affiliation(s)
- Edward J Smiley
- Department of Chemistry, 104 Chemistry Building, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | | | | |
Collapse
|
70
|
Asakawa D, Fujimaki S, Hashimoto Y, Mori K, Hiraoka K. Study on ion formation in electrospray droplet impact secondary ion mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2007; 21:1579-86. [PMID: 17428014 DOI: 10.1002/rcm.3004] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
A new type of cluster secondary ion mass spectrometry (SIMS), named electrospray droplet impact (EDI), has been developed in our laboratory. In general, rather strong negative ions as well as positive ions can be generated by EDI compared with conventional SIMS. In this work, various aspects of ion formation in EDI are investigated. The Brønsted bases (proton acceptor) and acids (proton donor) mixed in the analyte samples enhanced the signal intensities of deprotonated molecules (negative ions) and protonated molecules (positive ions), respectively, for analytes. This suggests the occurrence of heterogeneous proton transfer reactions (i.e. M + M' --> [M+H](+) + [M'-H](-)) in the shockwave-heated selvedge of the colliding interface between the water droplet and the solid sample deposited on the metal substrate. EDI-SIMS shows a remarkable tolerance to the large excess of salts present in samples. The mechanism for desorption/ionization in EDI is much simpler than those for MALDI and SIMS because only very thin sample layers take part in the shockwave-heated selvedge and complicated higher-order reactions are largely suppressed.
Collapse
Affiliation(s)
- Daiki Asakawa
- Clean Energy Research Center, University of Yamanashi, Kofu, Japan
| | | | | | | | | |
Collapse
|
71
|
McDonnell LA, Heeren RMA, de Lange RPJ, Fletcher IW. Higher sensitivity secondary ion mass spectrometry of biological molecules for high resolution, chemically specific imaging. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2006; 17:1195-202. [PMID: 16769220 DOI: 10.1016/j.jasms.2006.05.003] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2006] [Revised: 05/05/2006] [Accepted: 05/05/2006] [Indexed: 05/10/2023]
Abstract
To expand the role of high spatial resolution secondary ion mass spectrometry (SIMS) in biological studies, numerous developments have been reported in recent years for enhancing the molecular ion yield of high mass molecules. These include both surface modification, including matrix-enhanced SIMS and metal-assisted SIMS, and polyatomic primary ions. Using rat brain tissue sections and a bismuth primary ion gun able to produce atomic and polyatomic primary ions, we report here how the sensitivity enhancements provided by these developments are additive. Combined surface modification and polyatomic primary ions provided approximately 15.8 times more signal than using atomic primary ions on the raw sample, whereas surface modification and polyatomic primary ions yield approximately 3.8 and approximately 8.4 times more signal. This higher sensitivity is used to generate chemically specific images of higher mass biomolecules using a single molecular ion peak.
Collapse
Affiliation(s)
- Liam A McDonnell
- FOM Institute for Atomic and Molecular Physics, Amsterdam, The Netherlands
| | | | | | | |
Collapse
|
72
|
Hiraoka K, Mori K, Asakawa D. Fundamental aspects of electrospray droplet impact/SIMS. JOURNAL OF MASS SPECTROMETRY : JMS 2006; 41:894-902. [PMID: 16770831 DOI: 10.1002/jms.1048] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
A new ionization method, electrospray droplet impact ionization (EDI), has been developed for matrix-free secondary-ion mass spectrometry (SIMS). The charged droplets formed by electrospraying 1 M acetic acid aqueous solution are sampled through an orifice with a diameter of 400 microm into the first vacuum chamber, transported into a quadrupole ion guide, and accelerated by 10 kV after exiting the ion guide. The droplets impact on a dry solid sample (no matrix used) deposited on a stainless steel substrate. The secondary ions formed by the impact are transported to a second quadrupole ion guide and mass-analyzed by an orthogonal time-of-flight mass spectrometer (TOF-MS). Ten pmol of gramicidin S could be detected with the presence of as much as 10 nmol of NaCl. The ion signal for arginine disappeared with decrease in the substrate temperature below 150 K owing to the formation of ice film over the sample surface. While 10 fmol of gramicidin S could be detected for 30 min, the ionization/desorption efficiency for EDI becomes smaller with an increase in the molecular weight (MW) of a biological sample. The largest protein samples detected to date are cytochrome c and lysozyme. The high sensitivity for EDI is due to the fact that samples only a few monolayers thick are subject to desorption/ionization by EDI, with little fragmentation. A coherent phonon excitation may be the main mechanism for the desorption/ionization of the solid sample.
Collapse
Affiliation(s)
- Kenzo Hiraoka
- Clean Energy Research Center, University of Yamanashi, Takeda-4, Kofu 400-8510, Japan.
| | | | | |
Collapse
|
73
|
Szakal C, Kozole J, Russo MF, Garrison BJ, Winograd N. Surface sensitivity in cluster-ion-induced sputtering. PHYSICAL REVIEW LETTERS 2006; 96:216104. [PMID: 16803256 DOI: 10.1103/physrevlett.96.216104] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2006] [Indexed: 05/10/2023]
Abstract
The ion beam-induced removal of thin water ice films condensed onto Ag and bombarded by energetic Au, Au2, Au3, and C60 projectiles is examined both experimentally and with molecular dynamics computer simulations. For water overlayers of thicknesses greater than 10 A, the yields of sputtered Ag+ secondary ions decay exponentially with increasing ice thickness, revealing characteristic decay lengths of 24, 20, 18, and 7.0 A, respectively. It is shown that these values manifest the characteristic depths of projectile energy loss, rather than escape depths of the sputtered Ag atoms through the water ice overlayer. Computer simulations show that the mechanism of ejection involves the sweeping away of overlayer water molecules, allowing for an unimpeded escape of ejected Ag atoms. The relevance of these data with respect to surface sensitivity in secondary ion mass spectrometry is discussed.
Collapse
Affiliation(s)
- Christopher Szakal
- Department of Chemistry, Penn State University, 104 Chemistry Building, University Park, Pennsylvania 16802, USA
| | | | | | | | | |
Collapse
|
74
|
Senosiain JP, Klippenstein SJ, Miller JA. Pathways and Rate Coefficients for the Decomposition of Vinoxy and Acetyl Radicals. J Phys Chem A 2006; 110:5772-81. [PMID: 16640371 DOI: 10.1021/jp054934r] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The potential in the vicinity of the stationary points on the surface for the decomposition of ground-state vinoxy and acetyl radicals has been calculated using the RQCISD(T) method extrapolated to the infinite-basis set limit. Rate coefficients for the decomposition pathways of these two radicals were computed using the master equation and variational transition state theory. Agreement between our calculated rate coefficients for H + CH(2)CO <--> CH(3) + CO and experimental data is very good, without the need for empirical adjustments to the ab initio energy barriers. Multireference configuration-interaction calculations indicate two competitive channels for vinoxy decomposition, with the channel leading to H + CH(2)CO being preferred at photodissociation energies. However, at typical combustion conditions, vinoxy decomposes primarily to CO and methyl. In contrast, decomposition of acetyl shows only one decomposition channel, leading to CO and methyl. The implications of a low-lying exit channel for the calculation of theoretical rate coefficients are discussed briefly.
Collapse
Affiliation(s)
- Juan P Senosiain
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94551-0969, USA.
| | | | | |
Collapse
|
75
|
Abstract
Peptide-doped trehalose thin films have been characterized by bombardment with energetic cluster ion beams of C60+ and Aux+ (x = 1, 2, 3). The aim of these studies is to acquire information about the molecular sputtering process of the peptide and trehalose by measurement of secondary ion mass spectra during erosion. This system is important since uniform thin films of approximately 300 nm thickness can be reproducibly prepared on a Si substrate, allowing detailed characterization of the resulting depth profile with different projectiles. The basic form of the molecular ion intensity as a function of ion dose is described by a simple analytical model. The model includes parameters such as the molecular sputtering yield, the damage cross section of the trehalose or the peptide, and the thickness of a surface layer altered by the projectile. The results show that favorable conditions for successful molecular depth profiling are achieved when the total sputtering yield is high and the altered layer thickness is low. Successful molecular depth profiles are achieved with all of the cluster projectiles, although the degree of chemical damage accumulation was slightly lower with C60. With C60 bombardment, the altered layer thickness of about 20 nm and the damage cross section of about 5 nm2 are physically consistent with predictions of molecular dynamics calculations available for similar chemical systems. In general, the model presented should provide guidance in optimizing experimental parameters for maximizing the information content of molecular depth profiling experiments with complex molecular thin film substrates.
Collapse
Affiliation(s)
- Juan Cheng
- Chemistry Department, Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802, USA
| | | | | |
Collapse
|
76
|
Michel R, Castner DG. Advances in time-of-flight secondary ion mass spectrometry analysis of protein films. SURF INTERFACE ANAL 2006. [DOI: 10.1002/sia.2382] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
77
|
Fletcher JS, Lockyer NP, Vickerman JC. C60, Buckminsterfullerene: its impact on biological ToF-SIMS analysis. SURF INTERFACE ANAL 2006. [DOI: 10.1002/sia.2461] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
78
|
Wojciechowski IA, Garrison BJ. Sputtering of Water Ice Induced by C60 Bombardment: Onset of Plume Formation. J Phys Chem A 2005; 110:1389-92. [PMID: 16435799 DOI: 10.1021/jp054512h] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The interaction of a 5 keV C(60) projectile with amorphous water ice is studied using molecular dynamics computer simulations. The energetic C(60) molecule causes large-scale collisional events in the subsurface region, involving more than 10(4) water molecules in a time of less than 3 ps. The energy deposited in the sample is sufficiently large to turn the ice into a superheated and superdense gas. The gas is expelled into the vacuum, leading to the formation of a flow that manifests itself in the angular and velocity distributions of emitted water molecules.
Collapse
Affiliation(s)
- I A Wojciechowski
- Department of Chemistry, Penn State University, University Park, Pennsylvania 16802, USA
| | | |
Collapse
|
79
|
Sun S, Szakal C, Winograd N, Wucher A. Energetic ion bombardment of Ag surfaces by C60+ and Ga+ projectiles. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2005; 16:1677-86. [PMID: 16099165 DOI: 10.1016/j.jasms.2005.06.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2005] [Revised: 06/14/2005] [Accepted: 06/16/2005] [Indexed: 05/04/2023]
Abstract
The ion bombardment-induced release of particles from a metal surface is investigated using energetic fullerene cluster ions as projectiles. The total sputter yield as well as partial yields of neutral and charged monomers and clusters leaving the surface are measured and compared with corresponding data obtained with atomic projectile ions of similar impact kinetic energy. It is found that all yields are enhanced by about one order of magnitude under bombardment with the C60+ cluster projectiles compared with Ga+ ions. In contrast, the electronic excitation processes determining the secondary ion formation probability are unaffected. The kinetic energy spectra of sputtered particles exhibit characteristic differences which reflect the largely different nature of the sputtering process for both types of projectiles. In particular, it is found that under C60+ impact (1) the energy spectrum of sputtered atoms peaks at significantly lower kinetic energies than for Ga+ bombardment and (2) the velocity spectra of monomers and dimers are virtually identical, a finding which is in pronounced contrast to all published data obtained for atomic projectiles. The experimental findings are in reasonable agreement with recent molecular dynamics simulations.
Collapse
Affiliation(s)
- Shixin Sun
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | | | | | | |
Collapse
|
80
|
Postawa Z, Czerwinski B, Winograd N, Garrison BJ. Microscopic Insights into the Sputtering of Thin Organic Films on Ag{111} Induced by C60 and Ga Bombardment. J Phys Chem B 2005; 109:11973-9. [PMID: 16852476 DOI: 10.1021/jp050821w] [Citation(s) in RCA: 84] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Molecular dynamics computer simulations have been employed to model the bombardment of Ag{111} covered with three layers of C6H6 by 15 keV Ga and C60 projectiles. The study is aimed toward examining the mechanism by which molecules are desorbed from surfaces by energetic cluster ion beams and toward elucidating the differences between cluster bombardment and atom bombardment. The results show that the impact of the cluster on the benzene-covered surface leads to molecular desorption during the formation of a mesoscopic scale impact crater via a catapulting mechanism. Because of the high yield of C6H6 with both Ga and C60, the yield enhancement is observed to be consistent with related experimental observations. Specific energy and angle distributions are shown to be associated with the catapult mechanism.
Collapse
Affiliation(s)
- Zbigniew Postawa
- Smoluchowski Institute of Physics, Jagiellonian University, Krakow, Poland.
| | | | | | | |
Collapse
|
81
|
Abstract
A buckminsterfullerene ion source is employed to characterize peptide-doped trehalose thin films. The experiments are designed to utilize the unique sputtering properties of cluster ion beams for molecular depth profiling. The results show that trehalose films with high uniformity can be prepared on Si by a spin-coating technique. Bombardment of the film with C60+ results in high quality time-of-flight secondary ion mass spectrometry spectra, even during ion doses of up to 3 x 10(14) ions/cm2. This result is in contrast to atomic bombardment experiments in which the dose of incident ions must be kept below 10(12) ions/cm2 so as to retain mass spectral information. Moreover, since the films are of uniform thickness, it is possible to depth-profile through the film and into the Si substrate. This experimental protocol allows the yield of trehalose molecular equivalents and the degree of interface mixing to be evaluated in detail. When doped with a variety of small peptides up to a molecular weight of m/z 500, we find that the peptide molecular ion intensity remains stable under continuous C60+ bombardment, although some decrease in intensity is observed. The results are interpreted in terms of a model whereby the high trehalose yield and low damage depth of the C60 projectile combine to prevent damage accumulation. In general, the peptide-trehalose system provides a valuable model for evaluating the parameters that lead to effective 3-dimensional characterization of biomaterials.
Collapse
Affiliation(s)
- Juan Cheng
- Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802, USA
| | | |
Collapse
|
82
|
Wojciechowski IA, Garrison BJ. Collision-Induced Dissociation of Water into Ions. J Phys Chem B 2005; 109:2894-8. [PMID: 16851302 DOI: 10.1021/jp046192s] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A modification of the central force model (CFM) that describes the dissociation of water molecules into OH- and H+ ions is proposed for molecular dynamics simulations of energetic particle bombardment of water ice. The model keeps all the properties of the CFM but permits charge exchange between oxygen and hydrogen atoms when the water molecule starts to dissociate after collision with an energetic projectile. The reaction products, therefore, have the correct integer charges, -1 and +1 for hydroxyl and a proton. The threshold for the ionic dissociation is corrected to be at the right value, 17.2 eV, in a vacuum. Using the proposed model, total cross-sections for ionic dissociation as functions of the projectile energy are estimated for Ar and C projectiles colliding with water molecules in a vacuum and water ice. Carbon projectiles are demonstrated to produce more dissociated ions at energies lower than 300 eV. Argon projectiles are more effective in breaking the molecules at higher energies.
Collapse
Affiliation(s)
- Igor A Wojciechowski
- Department of Chemistry, 104 Chemistry Building, Penn State University, University Park, Pennsylvania 16802, USA
| | | |
Collapse
|
83
|
Wucher A, Sun S, Szakal C, Winograd N. Molecular Depth Profiling of Histamine in Ice Using a Buckminsterfullerene Probe. Anal Chem 2004; 76:7234-42. [PMID: 15595864 DOI: 10.1021/ac049641t] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We employ a buckminsterfullerene ion source to probe the distribution of histamine molecules at the water-ice/vacuum interface. The experiments utilize secondary ion mass spectrometry to detect molecular ions that are desorbed from a frozen aqueous histamine solution. The results show that this cluster ion probe induces an extraordinarily high sputter yield of 2400 ice molecules per impact event as determined by a quartz crystal microbalance. As a consequence of this high yield, we show that it is possible to produce molecular depth profiles of the top several hundred nanometers below the ice surface without destruction of the molecular ion signal by accumulation of beam-induced chemical damage. Similar profiles are reported for desorbed neutral molecular fragments by utilizing a high-power femtosecond-pulsed laser for photoionization. While this type of information could not be achieved using atomic projectiles, it is possible to remove the damage induced by such projectiles by subsequent cluster bombardment. These experiments are particularly important for organic surface analysis since they suggest that cluster ion probes may successfully be employed to remove overlayers that may mask the desired molecular information in static secondary ion mass spectral analysis.
Collapse
Affiliation(s)
- Andreas Wucher
- Department of Chemistry, The Pennsylvania State University, 184 MRI Building, University Park, Pennsylvania 16802, USA.
| | | | | | | |
Collapse
|
84
|
Sostarecz AG, McQuaw CM, Wucher A, Winograd N. Depth Profiling of Langmuir−Blodgett Films with a Buckminsterfullerene Probe. Anal Chem 2004; 76:6651-8. [PMID: 15538789 DOI: 10.1021/ac0492665] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Bombardment with C60+ primary ions of monolayer and multilayer barium arachidate Langmuir-Blodgett (LB) films is investigated. The behavior of cluster versus atomic (Ga+) bombardment is monitored by the barium-cationized arachidate ion (mass-to-charge ratio (m/z) 449) and a characteristic fragment ion (m/z 209) using 1-, 7-, and 15-layer model systems. The removal rate of material from the films is shown to be on the order of several hundred molecules per C60 impact, a value 100-fold larger than Ga+ impact. The enhancement in secondary ion yield is also shown to be larger for the 15-layer film (400x) than for the monolayer film (100x). Moreover, most of the increase in yield is shown to be associated with ejection of sputtered species rather than an increase in ionization probability. High yields associated with cluster bombardment are also shown to be amenable to depth profiling experiments in which the two ions can be monitored as the film is being removed. In this modality, chemical damage associated with bombardment is removed before it can accumulate on the surface. Due to the similarity of fatty acid LB films to cellular membranes, these results suggest that C60+ primary ion beams may improve the prospects for TOF-SIMS studies of biological systems.
Collapse
Affiliation(s)
- Audra G Sostarecz
- Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802, USA
| | | | | | | |
Collapse
|