51
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Tochitsky I, Kienzler MA, Isacoff E, Kramer RH. Restoring Vision to the Blind with Chemical Photoswitches. Chem Rev 2018; 118:10748-10773. [PMID: 29874052 DOI: 10.1021/acs.chemrev.7b00723] [Citation(s) in RCA: 89] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Degenerative retinal diseases such as retinitis pigmentosa (RP) and age-related macular degeneration (AMD) affect millions of people around the world and lead to irreversible vision loss if left untreated. A number of therapeutic strategies have been developed over the years to treat these diseases or restore vision to already blind patients. In this Review, we describe the development and translational application of light-sensitive chemical photoswitches to restore visual function to the blind retina and compare the translational potential of photoswitches with other vision-restoring therapies. This therapeutic strategy is enabled by an efficient fusion of chemical synthesis, chemical biology, and molecular biology and is broadly applicable to other biological systems. We hope this Review will be of interest to chemists as well as neuroscientists and clinicians.
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Affiliation(s)
- Ivan Tochitsky
- F.M. Kirby Neurobiology Center , Boston Children's Hospital , Boston , Massachusetts 02115 , United States.,Department of Neurobiology , Harvard Medical School , Boston , Massachusetts 02115 , United States
| | - Michael A Kienzler
- Department of Chemistry , University of Maine , Orono , Maine 04469 , United States
| | - Ehud Isacoff
- Department of Molecular and Cell Biology , University of California , Berkeley , California 94720 , United States.,Helen Wills Neuroscience Institute , University of California , Berkeley , California 94720 , United States.,Bioscience Division , Lawrence Berkeley National Laboratory , Berkeley , California 94720 , United States
| | - Richard H Kramer
- Department of Molecular and Cell Biology , University of California , Berkeley , California 94720 , United States.,Helen Wills Neuroscience Institute , University of California , Berkeley , California 94720 , United States
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52
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Bregestovski P, Maleeva G, Gorostiza P. Light-induced regulation of ligand-gated channel activity. Br J Pharmacol 2018; 175:1892-1902. [PMID: 28859250 PMCID: PMC5979632 DOI: 10.1111/bph.14022] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Revised: 06/21/2017] [Accepted: 07/03/2017] [Indexed: 12/25/2022] Open
Abstract
The control of ligand-gated receptors with light using photochromic compounds has evolved from the first handcrafted examples to accurate, engineered receptors, whose development is supported by rational design, high-resolution protein structures, comparative pharmacology and molecular biology manipulations. Photoswitchable regulators have been designed and characterized for a large number of ligand-gated receptors in the mammalian nervous system, including nicotinic acetylcholine, glutamate and GABA receptors. They provide a well-equipped toolbox to investigate synaptic and neuronal circuits in all-optical experiments. This focused review discusses the design and properties of these photoswitches, their applications and shortcomings and future perspectives in the field. LINKED ARTICLES This article is part of a themed section on Nicotinic Acetylcholine Receptors. To view the other articles in this section visit http://onlinelibrary.wiley.com/doi/10.1111/bph.v175.11/issuetoc.
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Affiliation(s)
- Piotr Bregestovski
- Aix Marseille Université, INSERM 1106 Institut de Neurosciences des SystèmesMarseilleFrance
- Department of PhysiologyKazan Medical State UniversityKazanRussia
| | - Galyna Maleeva
- Aix Marseille Université, INSERM 1106 Institut de Neurosciences des SystèmesMarseilleFrance
| | - Pau Gorostiza
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and TechnologyBarcelonaSpain
- ICREABarcelonaSpain
- CIBER‐BBNMadridSpain
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53
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DuBay KH, Iwan K, Osorio-Planes L, Geissler PL, Groll M, Trauner D, Broichhagen J. A Predictive Approach for the Optical Control of Carbonic Anhydrase II Activity. ACS Chem Biol 2018; 13:793-800. [PMID: 29357237 DOI: 10.1021/acschembio.7b00862] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Optogenetics and photopharmacology are powerful approaches to investigating biochemical systems. While the former is based on genetically encoded photoreceptors that utilize abundant chromophores, the latter relies on synthetic photoswitches that are either freely diffusible or covalently attached to specific bioconjugation sites, which are often native or engineered cysteines. The identification of suitable cysteine sites and appropriate linkers for attachment is generally a lengthy and cumbersome process. Herein, we describe an in silico screening approach that is designed to propose a small number of optimal combinations. By applying this computational approach to human carbonic anhydrase and a set of three photochromic tethered ligands, the number of potential site-ligand combinations was narrowed from over 750 down to 6, which we then evaluated experimentally. Two of these six combinations resulted in light-responsive human Carbonic Anhydrases (LihCAs), which were characterized with enzymatic activity assays, mass spectrometry, and X-ray crystallography. Our study also provides insights into the reactivity of cysteines toward maleimides and the hydrolytic stability of the adducts obtained.
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Affiliation(s)
- Kateri H DuBay
- Department of Chemistry , University of California at Berkeley , Berkeley , California 94720 , United States
| | - Katharina Iwan
- Department of Chemistry , Ludwig-Maximilian-University Munich and Munich Center for Integrated Protein Science (CIPSM) , Butenandtstrasse 5-13 , 83177 Munich , Germany
| | - Laura Osorio-Planes
- Institute of Chemical Research of Catalonia (ICIQ) , Av. Països Catalans, 16 , 43007 Tarragona , Spain
| | - Phillip L Geissler
- Department of Chemistry , University of California at Berkeley , Berkeley , California 94720 , United States
- Chemical Sciences, Physical Biosciences, and Materials Sciences Divisions , Lawrence Berkeley National Laboratory , Berkeley , California 94720 , United States
- Biophysics Graduate Group , University of California at Berkeley , Berkeley , California 94720 , United States
| | - Michael Groll
- Department of Chemistry , Technical University Munich and Munich Center for Integrated Protein Science (CIPSM) , Lichtenbergstr. 4 , 85747 Garching/Munich , Germany
| | - Dirk Trauner
- Department of Chemistry , Ludwig-Maximilian-University Munich and Munich Center for Integrated Protein Science (CIPSM) , Butenandtstrasse 5-13 , 83177 Munich , Germany
| | - Johannes Broichhagen
- Department of Chemistry , Ludwig-Maximilian-University Munich and Munich Center for Integrated Protein Science (CIPSM) , Butenandtstrasse 5-13 , 83177 Munich , Germany
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54
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Wang L, Li Q. Photochromism into nanosystems: towards lighting up the future nanoworld. Chem Soc Rev 2018; 47:1044-1097. [PMID: 29251304 DOI: 10.1039/c7cs00630f] [Citation(s) in RCA: 312] [Impact Index Per Article: 52.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The ability to manipulate the structure and function of promising nanosystems via energy input and external stimuli is emerging as an attractive paradigm for developing reconfigurable and programmable nanomaterials and multifunctional devices. Light stimulus manifestly represents a preferred external physical and chemical tool for in situ remote command of the functional attributes of nanomaterials and nanosystems due to its unique advantages of high spatial and temporal resolution and digital controllability. Photochromic moieties are known to undergo reversible photochemical transformations between different states with distinct properties, which have been extensively introduced into various functional nanosystems such as nanomachines, nanoparticles, nanoelectronics, supramolecular nanoassemblies, and biological nanosystems. The integration of photochromism into these nanosystems has endowed the resultant nanostructures or advanced materials with intriguing photoresponsive behaviors and more sophisticated functions. In this Review, we provide an account of the recent advancements in reversible photocontrol of the structures and functions of photochromic nanosystems and their applications. The important design concepts of such truly advanced materials are discussed, their fabrication methods are emphasized, and their applications are highlighted. The Review is concluded by briefly outlining the challenges that need to be addressed and the opportunities that can be tapped into. We hope that the review of the flourishing and vibrant topic with myriad possibilities would shine light on exploring the future nanoworld by encouraging and opening the windows to meaningful multidisciplinary cooperation of engineers from different backgrounds and scientists from the fields such as chemistry, physics, engineering, biology, nanotechnology and materials science.
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Affiliation(s)
- Ling Wang
- Liquid Crystal Institute and Chemical Physics Interdisciplinary Program, Kent State University, Kent, Ohio 44242, USA.
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55
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Zhao P, Bu Y. Azobenzene-bridged diradical janus nucleobases with photo-converted magnetic properties between antiferromagnetic and ferromagnetic couplings. J Comput Chem 2018; 39:1398-1405. [DOI: 10.1002/jcc.25207] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Revised: 02/10/2018] [Accepted: 02/15/2018] [Indexed: 12/20/2022]
Affiliation(s)
- Peiwen Zhao
- School of Chemistry and Chemical Engineering; Shandong University; Jinan 250100 People's Republic of China
| | - Yuxiang Bu
- School of Chemistry and Chemical Engineering; Shandong University; Jinan 250100 People's Republic of China
- School of Chemistry and Chemical Engineering; Qufu Normal University; Qufu 273165 People's Republic of China
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56
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Lin WC, Kramer RH. Light-Switchable Ion Channels and Receptors for Optogenetic Interrogation of Neuronal Signaling. Bioconjug Chem 2018; 29:861-869. [PMID: 29465988 DOI: 10.1021/acs.bioconjchem.7b00803] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Optogenetics is an emerging technique that enables precise and specific control of biological activities in defined space and time. This technique employs naturally occurring or engineered light-responsive proteins to manipulate the physiological processes of the target cells. To better elucidate the molecular bases of neural functions, substantial efforts have been made to confer light sensitivity onto ion channels and neurotransmitter receptors that mediate signaling events within and between neurons. The chemical strategies for engineering light-switchable channels/receptors and the neuronal implementation of these tools are discussed.
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Affiliation(s)
- Wan-Chen Lin
- Department of Molecular and Cell Biology , University of California, Berkeley , 121 Life Sciences Addition , Berkeley , California 94720 , United States
| | - Richard H Kramer
- Department of Molecular and Cell Biology , University of California, Berkeley , 121 Life Sciences Addition , Berkeley , California 94720 , United States
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57
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Abstract
The last few years have witnessed significant advances in the use of light as a stimulus to control biomolecular interactions. Great efforts have been devoted to the development of genetically encoded optobiological and small photochromic switches. Newly discovered small molecules now allow researchers to build molecular systems that are sensitive to a wider range of wavelengths of light than ever before with improved switching fidelities and increased lifetimes of the photoactivated states. Because these molecules are relatively small and adopt predictable conformations they are well suited as tools to interrogate cellular function in a spatially and temporally contolled fashion and for applications in photopharmacology.
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Affiliation(s)
- Robert J Mart
- School of Chemistry & Cardiff Catalysis Institute, Cardiff University, Park Place, Cardiff, CF10 3AT, UK.
| | - Rudolf K Allemann
- School of Chemistry & Cardiff Catalysis Institute, Cardiff University, Park Place, Cardiff, CF10 3AT, UK.
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58
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Xu C, Yu L, Gu FL, Zhu C. Probing the π → π* photoisomerization mechanism of trans-azobenzene by multi-state ab initio on-the-fly trajectory dynamics simulations. Phys Chem Chem Phys 2018; 20:23885-23897. [DOI: 10.1039/c8cp02767f] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Global nonadiabatic switching on-the-fly trajectory surface hopping simulations at the 5SA-CASSCF(6,6)/6-31G quantum level have been employed to probe the photoisomerization mechanism of trans-azobenzene upon ππ* excitation within four coupled singlet low-lying electronic states (S0, S1, S2, and S3).
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Affiliation(s)
- Chao Xu
- Key Laboratory of Theoretical Chemistry of Environment
- Ministry of Education
- School of Chemistry & Environment of South China Normal University
- Guangzhou 51006
- P. R. China
| | - Le Yu
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education
- College of Chemistry & Materials Science and Shaanxi Key Laboratory of Physico-Inorganic Chemistry
- Northwest University
- Xi’an 710069
- China
| | - Feng Long Gu
- Key Laboratory of Theoretical Chemistry of Environment
- Ministry of Education
- School of Chemistry & Environment of South China Normal University
- Guangzhou 51006
- P. R. China
| | - Chaoyuan Zhu
- Key Laboratory of Theoretical Chemistry of Environment
- Ministry of Education
- School of Chemistry & Environment of South China Normal University
- Guangzhou 51006
- P. R. China
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59
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Durand-de Cuttoli R, Mondoloni S, Mourot A. [Optically dissecting brain nicotinic receptor function with photo-controllable designer receptors]. Biol Aujourdhui 2017; 211:173-188. [PMID: 29236669 DOI: 10.1051/jbio/2017022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2017] [Indexed: 06/07/2023]
Abstract
Nicotinic acetylcholine receptors (nAChRs) are pentameric ligand-gated ion channels widely expressed in the central nervous system and the periphery. They play an important modulatory role in learning, memory and attention, and have been implicated in various diseases such as Alzheimer's disease, Parkinson's disease, epilepsy, schizophrenia and addiction. These receptors are activated by the endogenous neurotransmitter acetylcholine, or by nicotine, the alkaloid found in tobacco leaves. Both molecules open the ion channel and cause the movement of cations across the membrane, which directly affects neuronal excitability and synaptic plasticity. nAChRs are very heterogeneous in their subunit composition (α2-10 et β2-4), in their brain distribution (cortex, midbrain, striatum…) and in their sub-cellular localization (pre- vs post-synaptic, axonal, dendritic…). This heterogeneity highly contributes to the very diverse roles these receptors have in health and disease. The ability to activate or block a specific nAChR subtype, at a defined time and space within the brain, would greatly help obtaining a clearer picture of these various functions. To this aim, we are developing novel optogenetic pharmacology strategies for optically controlling endogenous nAChR isoforms within the mouse brain. The idea is to tether a chemical photoswitch on the surface of a cysteine-modified nAChR, and use light for rapidly and reversibly turning that receptor mutant on and off. Here we will discuss the history of optogenetic pharmacology, and the recent advances for the optical control of brain nicotinic receptors in vivo.
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Affiliation(s)
- Romain Durand-de Cuttoli
- Sorbonne Universités, UPMC Univ Paris 06, INSERM, CNRS, Neuroscience Paris Seine - Institut de Biologie Paris Seine (NPS - IBPS), 75005 Paris, France
| | - Sarah Mondoloni
- Sorbonne Universités, UPMC Univ Paris 06, INSERM, CNRS, Neuroscience Paris Seine - Institut de Biologie Paris Seine (NPS - IBPS), 75005 Paris, France
| | - Alexandre Mourot
- Sorbonne Universités, UPMC Univ Paris 06, INSERM, CNRS, Neuroscience Paris Seine - Institut de Biologie Paris Seine (NPS - IBPS), 75005 Paris, France
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60
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Lam PY, Mendu SK, Mills RW, Zheng B, Padilla H, Milan DJ, Desai BN, Peterson RT. A high-conductance chemo-optogenetic system based on the vertebrate channel Trpa1b. Sci Rep 2017; 7:11839. [PMID: 28928472 PMCID: PMC5605526 DOI: 10.1038/s41598-017-11791-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Accepted: 08/30/2017] [Indexed: 01/04/2023] Open
Abstract
Optogenetics is a powerful research approach that allows localized optical modulation of selected cells within an animal via the expression of genetically encoded photo-excitable ion channels. Commonly used optogenetic techniques rely on the expression of microbial opsin variants, which have many excellent features but suffer from various degrees of blue spectral overlap and limited channel conductance. Here, we expand the optogenetics toolbox in the form of a tunable, high-conductance vertebrate cation channel, zTrpa1b, coupled with photo-activated channel ligands, such as optovin and 4g6. Our results demonstrate that zTrpa1b/ligand pairing offers high light sensitivity, millisecond-scale response latency in vivo, as well as adjustable channel off latency. Exogenous in vivo expression of zTrpa1b in sensory neurons allowed subcellular photo-activation, enabling light-dependent motor control. zTrpa1b/ligand was also suitable for cardiomyocyte pacing, as shown in experiments performed on zebrafish hearts in vivo as well as in human stem cell-derived cardiomyocytes in vitro. Therefore, zTrpa1b/optovin represents a novel tool for flexible, high-conductance optogenetics.
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Affiliation(s)
- Pui-Ying Lam
- Cardiovascular Research Center, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA. .,Department of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA. .,Broad Institute, Cambridge, MA, 02142, USA. .,Department of Pharmacology and Toxicology, College of Pharmacy, University of Utah, Salt Lake City, UT, 84112, USA.
| | - Suresh K Mendu
- Department of Pharmacology, University of Virginia School of Medicine, Charlottesville, VA, 22908, USA
| | - Robert W Mills
- Cardiovascular Research Center, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA
| | - Baohui Zheng
- Cardiovascular Research Center, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA
| | - Hugo Padilla
- Cardiovascular Research Center, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA.,Department of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.,Broad Institute, Cambridge, MA, 02142, USA.,Department of Pharmacology and Toxicology, College of Pharmacy, University of Utah, Salt Lake City, UT, 84112, USA
| | - David J Milan
- Cardiovascular Research Center, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA
| | - Bimal N Desai
- Department of Pharmacology, University of Virginia School of Medicine, Charlottesville, VA, 22908, USA
| | - Randall T Peterson
- Cardiovascular Research Center, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA. .,Department of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA. .,Broad Institute, Cambridge, MA, 02142, USA. .,Department of Pharmacology and Toxicology, College of Pharmacy, University of Utah, Salt Lake City, UT, 84112, USA.
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61
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Leippe P, Koehler Leman J, Trauner D. Specificity and Speed: Tethered Photopharmacology. Biochemistry 2017; 56:5214-5220. [DOI: 10.1021/acs.biochem.7b00687] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Philipp Leippe
- Department
of Chemistry and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, Butenandtstrasse 5-13, 81377 Munich, Germany
| | - Julia Koehler Leman
- Center
for Computational Biology, Flatiron Institute, Simons Foundation, 162 Fifth Avenue, New York, New York 10010, United States
- Department
of Biology and Center for Genomics and Systems Biology, New York University, New York, New York 10003, United States
| | - Dirk Trauner
- Department
of Chemistry and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, Butenandtstrasse 5-13, 81377 Munich, Germany
- Department
of Chemistry, New York University, Silver Center, 100 Washington Square
East, Room 712, New York, New York 10003, United States
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62
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Mogaki R, Okuro K, Aida T. Adhesive Photoswitch: Selective Photochemical Modulation of Enzymes under Physiological Conditions. J Am Chem Soc 2017; 139:10072-10078. [DOI: 10.1021/jacs.7b05151] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Rina Mogaki
- Department
of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku,
Tokyo 113-8656, Japan
| | - Kou Okuro
- Department
of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku,
Tokyo 113-8656, Japan
| | - Takuzo Aida
- Department
of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku,
Tokyo 113-8656, Japan
- Riken Center for Emergent Matter Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
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63
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Kienzler MA, Isacoff EY. Precise modulation of neuronal activity with synthetic photoswitchable ligands. Curr Opin Neurobiol 2017; 45:202-209. [PMID: 28690101 DOI: 10.1016/j.conb.2017.05.021] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2017] [Revised: 05/22/2017] [Accepted: 05/23/2017] [Indexed: 12/15/2022]
Affiliation(s)
| | - Ehud Y Isacoff
- Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA; Helen Wills Neuroscience Institute, University of California, Berkeley, CA 94720, USA; Bioscience Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
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64
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Klippenstein V, Hoppmann C, Ye S, Wang L, Paoletti P. Optocontrol of glutamate receptor activity by single side-chain photoisomerization. eLife 2017; 6. [PMID: 28534738 PMCID: PMC5441875 DOI: 10.7554/elife.25808] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2017] [Accepted: 05/01/2017] [Indexed: 12/26/2022] Open
Abstract
Engineering light-sensitivity into proteins has wide ranging applications in molecular studies and neuroscience. Commonly used tethered photoswitchable ligands, however, require solvent-accessible protein labeling, face structural constrains, and are bulky. Here, we designed a set of optocontrollable NMDA receptors by directly incorporating single photoswitchable amino acids (PSAAs) providing genetic encodability, reversibility, and site tolerance. We identified several positions within the multi-domain receptor endowing robust photomodulation. PSAA photoisomerization at the GluN1 clamshell hinge is sufficient to control glycine sensitivity and activation efficacy. Strikingly, in the pore domain, flipping of a M3 residue within a conserved transmembrane cavity impacts both gating and permeation properties. Our study demonstrates the first detection of molecular rearrangements in real-time due to the reversible light-switching of single amino acid side-chains, adding a dynamic dimension to protein site-directed mutagenesis. This novel approach to interrogate neuronal protein function has general applicability in the fast expanding field of optopharmacology. DOI:http://dx.doi.org/10.7554/eLife.25808.001 Nerve cells communicate with each other by releasing chemicals, also known as neurotransmitters, from one cell to the next. Once released, these neurotransmitters bind to specific docking stations, called receptors, which are located on the surface of the neighboring cell. Due to changes in neurotransmitter release or the receptor number, the connections between neurons can either strengthen or weaken over time. This process, called synaptic plasticity, forms the basis of learning and memory. One of the key players in synaptic plasticity are NMDA receptors, and if these receptors are faulty, it can cause disorders such as schizophrenia or epilepsy. NMDAs are a large family of receptors that have many receptor subtypes, each with specific properties. Every subtype is composed of four varying subunits. It is still unclear how these different receptor subtypes contribute to synaptic plasticity and new methods are needed to resolve this puzzle. An emerging strategy to study brain receptors is to engineer them so that they can be controlled with light. One approach to provide light-sensitivity uses molecules that act as ‘light switches’. These switches change their shape when exposed to specific colors of light and this way, turn a receptor on or off. However, commonly used light switches are often very large, meaning that they can only be introduced at specific sites in a receptor, and have limited ability to change the shape of a receptor. Klippenstein et al. have now generated a small light switch molecule with the size of a single amino acid side-chain that, in theory, could replace any of the usual amino acids in the NMDA receptor. Different locations for the light switch were tested to identify those that changed the activity of the receptor. When the receptors were stimulated with light, the light switch changed its shape, which in turn influenced the shape of the receptor. This meant that, depending on which amino acid in the receptor had been replaced with the light switch, light could be used to control the receptor activity in different ways. This new approach of using integrated light switches allows NMDA receptors to be controlled in a fast and reversible manner using something as simple as a beam of light. Further research will use the toolset of light-controllable receptors to study how the different NMDA receptor subtypes affect synaptic plasticity in the normal and diseased brain. DOI:http://dx.doi.org/10.7554/eLife.25808.002
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Affiliation(s)
- Viktoria Klippenstein
- Institut de Biologie de l'École Normale Supérieure, Ecole Normale Supérieure, CNRS, INSERM, PSL Research University, Paris, France
| | - Christian Hoppmann
- Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, United States.,Cardiovascular Research Institute, University of California, San Francisco, San Francisco, United States
| | - Shixin Ye
- Institut de Biologie de l'École Normale Supérieure, Ecole Normale Supérieure, CNRS, INSERM, PSL Research University, Paris, France.,Laboratory of Computational and Quantitative Biology, Université Pierre-et-Marie-Curie, CNRS, Paris, France
| | - Lei Wang
- Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, United States.,Cardiovascular Research Institute, University of California, San Francisco, San Francisco, United States
| | - Pierre Paoletti
- Institut de Biologie de l'École Normale Supérieure, Ecole Normale Supérieure, CNRS, INSERM, PSL Research University, Paris, France
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65
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Sim JY, Haney MP, Park SI, McCall JG, Jeong JW. Microfluidic neural probes: in vivo tools for advancing neuroscience. LAB ON A CHIP 2017; 17:1406-1435. [PMID: 28349140 DOI: 10.1039/c7lc00103g] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Microfluidic neural probes hold immense potential as in vivo tools for dissecting neural circuit function in complex nervous systems. Miniaturization, integration, and automation of drug delivery tools open up new opportunities for minimally invasive implants. These developments provide unprecedented spatiotemporal resolution in fluid delivery as well as multifunctional interrogation of neural activity using combined electrical and optical modalities. Capitalizing on these unique features, microfluidic technology will greatly advance in vivo pharmacology, electrophysiology, optogenetics, and optopharmacology. In this review, we discuss recent advances in microfluidic neural probe systems. In particular, we will highlight the materials and manufacturing processes of microfluidic probes, device configurations, peripheral devices for fluid handling and packaging, and wireless technologies that can be integrated for the control of these microfluidic probe systems. This article summarizes various microfluidic implants and discusses grand challenges and future directions for further developments.
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Affiliation(s)
- Joo Yong Sim
- Electronics and Telecommunications Research Institute, Bio-Medical IT Convergence Research Department, Daejeon, 34129, Republic of Korea
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66
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Berlin S, Isacoff EY. Synapses in the spotlight with synthetic optogenetics. EMBO Rep 2017; 18:677-692. [PMID: 28396573 DOI: 10.15252/embr.201744010] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2017] [Revised: 03/02/2017] [Accepted: 03/09/2017] [Indexed: 12/15/2022] Open
Abstract
Membrane receptors and ion channels respond to various stimuli and relay that information across the plasma membrane by triggering specific and timed processes. These include activation of second messengers, allowing ion permeation, and changing cellular excitability, to name a few. Gaining control over equivalent processes is essential to understand neuronal physiology and pathophysiology. Recently, new optical techniques have emerged proffering new remote means to control various functions of defined neuronal populations by light, dubbed optogenetics. Still, optogenetic tools do not typically address the activity of receptors and channels native to neurons (or of neuronal origin), nor gain access to their signaling mechanisms. A related method-synthetic optogenetics-bridges this gap by endowing light sensitivity to endogenous neuronal receptors and channels by the appending of synthetic, light-receptive molecules, or photoswitches. This provides the means to photoregulate neuronal receptors and channels and tap into their native signaling mechanisms in select regions of the neurons, such as the synapse. This review discusses the development of synthetic optogenetics as a means to study neuronal receptors and channels remotely, in their natural environment, with unprecedented spatial and temporal precision, and provides an overview of tool design, mode of action, potential clinical applications and insights and achievements gained.
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Affiliation(s)
- Shai Berlin
- The Ruth and Bruce Rappaport Faculty of Medicine, Technion- Israel Institute of Technology, Haifa, Israel
| | - Ehud Y Isacoff
- Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA.,Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.,Physical Bioscience Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
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67
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Hu Y, Zou W, Julita V, Ramanathan R, Tabor RF, Nixon-Luke R, Bryant G, Bansal V, Wilkinson BL. Photomodulation of bacterial growth and biofilm formation using carbohydrate-based surfactants. Chem Sci 2016; 7:6628-6634. [PMID: 28567253 PMCID: PMC5450525 DOI: 10.1039/c6sc03020c] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Accepted: 08/03/2016] [Indexed: 01/06/2023] Open
Abstract
Naturally occurring and synthetic carbohydrate amphiphiles have emerged as a promising class of antimicrobial and antiadhesive agents that act through a number of dynamic and often poorly understood mechanisms. In this paper, we provide the first report on the application of azobenzene trans-cis photoisomerization for effecting spatial and temporal control over bacterial growth and biofilm formation using carbohydrate-based surfactants. Photocontrollable surface tension studies and small angle neutron scattering (SANS) revealed the diverse geometries and dimensions of self-assemblies (micelles) made possible through variation of the head group and UV-visible light irradiation. Using these light-addressable amphiphiles, we demonstrate optical control over the antibacterial activity and formation of biofilms against multi-drug resistant (MDR) Pseudomonas aeruginosa, methicillin-resistant Staphylococcus aureus (MRSA) and Gram-negative Escherichia coli. To probe the mechanism of bioactivity further, we evaluated the impact of trans-cis photoisomerization in these surfactants on bacterial motility and revealed photomodulated enhancement in swarming motility in P. aeruginosa. These light-responsive amphiphiles should attract significant interest as a new class of antibacterial agents and as investigational tools for probing the complex mechanisms underpinning bacterial adhesion and biofilm formation.
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Affiliation(s)
- Yingxue Hu
- School of Chemistry , Monash University , Victoria 3800 , Australia
| | - Wenyue Zou
- Ian Potter NanoBioSensing Facility , NanoBiotechnology Research Laboratory , School of Science , RMIT University , Victoria 3000 , Australia .
| | - Villy Julita
- School of Chemistry , Monash University , Victoria 3800 , Australia
| | - Rajesh Ramanathan
- Ian Potter NanoBioSensing Facility , NanoBiotechnology Research Laboratory , School of Science , RMIT University , Victoria 3000 , Australia .
| | - Rico F Tabor
- School of Chemistry , Monash University , Victoria 3800 , Australia
| | - Reece Nixon-Luke
- Centre for Molecular and Nanoscale Physics , School of Science , RMIT University , Victoria 3000 , Australia
| | - Gary Bryant
- Centre for Molecular and Nanoscale Physics , School of Science , RMIT University , Victoria 3000 , Australia
| | - Vipul Bansal
- Ian Potter NanoBioSensing Facility , NanoBiotechnology Research Laboratory , School of Science , RMIT University , Victoria 3000 , Australia .
| | - Brendan L Wilkinson
- School of Science and Technology , The University of New England , New South Wales 2351 , Australia .
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68
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Pianowski ZL, Karcher J, Schneider K. Photoresponsive self-healing supramolecular hydrogels for light-induced release of DNA and doxorubicin. Chem Commun (Camb) 2016; 52:3143-6. [PMID: 26804160 DOI: 10.1039/c5cc09633b] [Citation(s) in RCA: 74] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
An azobenzene-containing cyclic dipeptide PAP-DKP-Lys is a photoresponsive low-MW hydrogelator. The gelation process can be triggered with temperature, pH, light, and ionic strength. The resulting self-healing gels can encapsulate dsDNA or an anticancer drug doxorubicin, and release them in a light-dependent manner.
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Affiliation(s)
- Zbigniew L Pianowski
- Institut für Organische Chemie, Karlsruher Institut für Technologie, Fritz-Haber-Weg 6, D-76131 Karlsruhe, Germany and Institut für Toxikologie und Genetik, Karlsruher Institut für Technologie, Herman-von-Helmholtz Platz 1, D-76344 Eggenstein-Leopoldshafen, Germany.
| | - Johannes Karcher
- Institut für Organische Chemie, Karlsruher Institut für Technologie, Fritz-Haber-Weg 6, D-76131 Karlsruhe, Germany
| | - Knut Schneider
- Institut für Organische Chemie, Karlsruher Institut für Technologie, Fritz-Haber-Weg 6, D-76131 Karlsruhe, Germany
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69
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Both pre- and post-synaptic alterations contribute to aberrant cholinergic transmission in superior cervical ganglia of APP(-/-) mice. Neuropharmacology 2016; 110:493-502. [PMID: 27553120 DOI: 10.1016/j.neuropharm.2016.08.021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2015] [Revised: 07/28/2016] [Accepted: 08/17/2016] [Indexed: 12/20/2022]
Abstract
Though amyloid precursor protein (APP) can potentially be cleaved to generate the pathological amyloid β peptide (Aβ), APP itself plays an important role in regulating neuronal activity. APP deficiency causes functional impairment in cholinergic synaptic transmission and cognitive performance. However, the mechanisms underlying altered cholinergic synaptic transmission in APP knock-out mice (APP(-/-)) are poorly understood. In this study, we conducted in vivo extracellular recording to investigate cholinergic compound action potentials (CAPs) of the superior cervical ganglion (SCG) in APP(-/-) and littermate wild-type (WT) mice. Our results demonstrate that APP not only regulates presynaptic activity, but also affects postsynaptic function at cholinergic synapses in SCG. APP deficiency reduces the number of vesicles in presynaptic terminalsand attenuatesthe amplitude of CAPs, likely due to dysfunction of high-affinity choline transporters. Pharmacological and biochemical examination showed that postsynaptic responsesmediated by α4β2 and α7 nicotinic acetylcholine receptors are reduced in the absence of APP. Our research provides evidences on how APP regulates cholinergic function and therefore may help to identify potential therapeutic targets to treat cholinergic dysfunction associated with Alzheimer's disease pathogenesis.
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70
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Babii O, Afonin S, Garmanchuk LV, Nikulina VV, Nikolaienko TV, Storozhuk OV, Shelest DV, Dasyukevich OI, Ostapchenko LI, Iurchenko V, Zozulya S, Ulrich AS, Komarov IV. Direct Photocontrol of Peptidomimetics: An Alternative to Oxygen‐Dependent Photodynamic Cancer Therapy. Angew Chem Int Ed Engl 2016; 55:5493-6. [DOI: 10.1002/anie.201600506] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2016] [Revised: 02/17/2016] [Indexed: 12/21/2022]
Affiliation(s)
- Oleg Babii
- Institute of Organic Chemistry (IOC) Karlsruhe Institute of Technology (KIT) Fritz-Haber-Weg 6 76131 Karlsruhe Germany
| | - Sergii Afonin
- Institute of Biological Interfaces (IBG-2) KIT POB 3640 76021 Karlsruhe Germany
| | | | | | | | | | | | - Olga I. Dasyukevich
- Kavetsky Institute of Experimental Pathology, Oncology and Radiobiology National Academy of Sciences of Ukraine (NASU) vul. Vasylkivska 45 03022 Kyiv Ukraine
| | | | | | | | - Anne S. Ulrich
- Institute of Organic Chemistry (IOC) Karlsruhe Institute of Technology (KIT) Fritz-Haber-Weg 6 76131 Karlsruhe Germany
- Institute of Biological Interfaces (IBG-2) KIT POB 3640 76021 Karlsruhe Germany
| | - Igor V. Komarov
- Institute of High Technologies (IHT) Taras Shevchenko National University of Kyiv (TSNUK) vul. Volodymyrska 60 01601 Kyiv Ukraine
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71
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Babii O, Afonin S, Garmanchuk LV, Nikulina VV, Nikolaienko TV, Storozhuk OV, Shelest DV, Dasyukevich OI, Ostapchenko LI, Iurchenko V, Zozulya S, Ulrich AS, Komarov IV. Direct Photocontrol of Peptidomimetics: An Alternative to Oxygen‐Dependent Photodynamic Cancer Therapy. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201600506] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Oleg Babii
- Institute of Organic Chemistry (IOC) Karlsruhe Institute of Technology (KIT) Fritz-Haber-Weg 6 76131 Karlsruhe Germany
| | - Sergii Afonin
- Institute of Biological Interfaces (IBG-2) KIT POB 3640 76021 Karlsruhe Germany
| | | | | | | | | | | | - Olga I. Dasyukevich
- Kavetsky Institute of Experimental Pathology, Oncology and Radiobiology National Academy of Sciences of Ukraine (NASU) vul. Vasylkivska 45 03022 Kyiv Ukraine
| | | | | | | | - Anne S. Ulrich
- Institute of Organic Chemistry (IOC) Karlsruhe Institute of Technology (KIT) Fritz-Haber-Weg 6 76131 Karlsruhe Germany
- Institute of Biological Interfaces (IBG-2) KIT POB 3640 76021 Karlsruhe Germany
| | - Igor V. Komarov
- Institute of High Technologies (IHT) Taras Shevchenko National University of Kyiv (TSNUK) vul. Volodymyrska 60 01601 Kyiv Ukraine
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72
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Berlin S, Szobota S, Reiner A, Carroll EC, Kienzler MA, Guyon A, Xiao T, Trauner D, Isacoff EY. A family of photoswitchable NMDA receptors. eLife 2016; 5. [PMID: 26929991 PMCID: PMC4786437 DOI: 10.7554/elife.12040] [Citation(s) in RCA: 60] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2015] [Accepted: 01/31/2016] [Indexed: 02/07/2023] Open
Abstract
NMDA receptors, which regulate synaptic strength and are implicated in learning and memory, consist of several subtypes with distinct subunit compositions and functional properties. To enable spatiotemporally defined, rapid and reproducible manipulation of function of specific subtypes, we engineered a set of photoswitchable GluN subunits ('LiGluNs'). Photo-agonism of GluN2A or GluN2B elicits an excitatory drive to hippocampal neurons that can be shaped in time to mimic synaptic activation. Photo-agonism of GluN2A at single dendritic spines evokes spine-specific calcium elevation and expansion, the morphological correlate of LTP. Photo-antagonism of GluN2A alone, or in combination with photo-antagonism of GluN1a, reversibly blocks excitatory synaptic currents, prevents the induction of long-term potentiation and prevents spine expansion. In addition, photo-antagonism in vivo disrupts synaptic pruning of developing retino-tectal projections in larval zebrafish. By providing precise and rapidly reversible optical control of NMDA receptor subtypes, LiGluNs should help unravel the contribution of specific NMDA receptors to synaptic transmission, integration and plasticity.
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Affiliation(s)
- Shai Berlin
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States
| | - Stephanie Szobota
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States
| | - Andreas Reiner
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States
| | - Elizabeth C Carroll
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States
| | - Michael A Kienzler
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States
| | - Alice Guyon
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.,Institut de Pharmacologie Moléculaire et Cellulaire, Université de Nice Sophia Antipolis, Nice, France
| | - Tong Xiao
- Department of Chemistry, University of California, Berkeley, Berkeley, United States
| | - Dirk Trauner
- Department of Chemistry, Center of Integrated Protein Science, University of Munich, Munich, Germany
| | - Ehud Y Isacoff
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.,Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, United States.,Physical Bioscience Division, Lawrence Berkeley National Laboratory, Berkeley, United States
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73
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Jafari MR, Lakusta J, Lundgren RJ, Derda R. Allene Functionalized Azobenzene Linker Enables Rapid and Light-Responsive Peptide Macrocyclization. Bioconjug Chem 2016; 27:509-14. [DOI: 10.1021/acs.bioconjchem.6b00026] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Mohammad R. Jafari
- Department of Chemistry and ‡Alberta Glycomics
Centre, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
| | - Jenner Lakusta
- Department of Chemistry and ‡Alberta Glycomics
Centre, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
| | - Rylan J. Lundgren
- Department of Chemistry and ‡Alberta Glycomics
Centre, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
| | - Ratmir Derda
- Department of Chemistry and ‡Alberta Glycomics
Centre, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
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74
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Levitz J, Popescu AT, Reiner A, Isacoff EY. A Toolkit for Orthogonal and in vivo Optical Manipulation of Ionotropic Glutamate Receptors. Front Mol Neurosci 2016; 9:2. [PMID: 26869877 PMCID: PMC4735401 DOI: 10.3389/fnmol.2016.00002] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2015] [Accepted: 01/06/2016] [Indexed: 12/16/2022] Open
Abstract
The ability to optically manipulate specific neuronal signaling proteins with genetic precision paves the way for the dissection of their roles in brain function, behavior, and disease. Chemical optogenetic control with photoswitchable tethered ligands (PTLs) enables rapid, reversible and reproducible activation or block of specific neurotransmitter-gated receptors and ion channels in specific cells. In this study, we further engineered and characterized the light-activated GluK2 kainate receptor, LiGluR, to develop a toolbox of LiGluR variants. Low-affinity LiGluRs allow for efficient optical control of GluK2 while removing activation by native glutamate, whereas variant RNA edited versions enable the synaptic role of receptors with high and low Ca2+ permeability to be assessed and spectral variant photoswitches provide flexibility in illumination. Importantly, we establish that LiGluR works efficiently in the cortex of awake, adult mice using standard optogenetic techniques, thus opening the door to probing the role of specific synaptic receptors and cellular signals in the neural circuit operations of the mammalian brain in normal conditions and in disease. The principals developed in this study are widely relevant to the engineering and in vivo use of optically controllable proteins, including other neurotransmitter receptors.
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Affiliation(s)
- Joshua Levitz
- Department of Molecular and Cell Biology, University of California, Berkeley Berkeley, CA, USA
| | - Andrei T Popescu
- Department of Molecular and Cell Biology, University of California, Berkeley Berkeley, CA, USA
| | - Andreas Reiner
- Department of Molecular and Cell Biology, University of California, BerkeleyBerkeley, CA, USA; Department of Biology and Biotechnology, Ruhr-University BochumBochum, Germany
| | - Ehud Y Isacoff
- Department of Molecular and Cell Biology, University of California, BerkeleyBerkeley, CA, USA; Helen Wills Neuroscience Institute, University of California, BerkeleyBerkeley, CA, USA; Physical Bioscience Division, Lawrence Berkeley National LaboratoryBerkeley, CA, USA
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75
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Habermacher C, Martz A, Calimet N, Lemoine D, Peverini L, Specht A, Cecchini M, Grutter T. Photo-switchable tweezers illuminate pore-opening motions of an ATP-gated P2X ion channel. eLife 2016; 5:e11050. [PMID: 26808983 PMCID: PMC4739762 DOI: 10.7554/elife.11050] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Accepted: 10/27/2015] [Indexed: 11/13/2022] Open
Abstract
P2X receptors function by opening a transmembrane pore in response to extracellular ATP. Recent crystal structures solved in apo and ATP-bound states revealed molecular motions of the extracellular domain following agonist binding. However, the mechanism of pore opening still remains controversial. Here we use photo-switchable cross-linkers as ‘molecular tweezers’ to monitor a series of inter-residue distances in the transmembrane domain of the P2X2 receptor during activation. These experimentally based structural constraints combined with computational studies provide high-resolution models of the channel in the open and closed states. We show that the extent of the outer pore expansion is significantly reduced compared to the ATP-bound structure. Our data further reveal that the inner and outer ends of adjacent pore-lining helices come closer during opening, likely through a hinge-bending motion. These results provide new insight into the gating mechanism of P2X receptors and establish a versatile strategy applicable to other membrane proteins. DOI:http://dx.doi.org/10.7554/eLife.11050.001 Protein receptors in the cell membrane play an important role transmitting signals from outside to inside the cell. Members of the P2X family of receptors are ion channels that form pores through the membrane. When a molecule of ATP binds to the external region of the receptor, it activates it and causes the receptor to change from a closed to an open shape. Once opened, ions flow through the channel’s pore and trigger a response inside the cell. P2X receptors are found on most animal cells (including nerve cells) and are involved in both normal cellular activity and processes linked to disease, including inflammation and chronic pain. The P2X receptor has three parts or subunits, and each contributes to the channel’s pore. Recent research using a technique called X-ray crystallography has revealed how ATP binding causes shape changes in the external region of the receptor. But these three-dimensional structures did not reveal details of how the subunits move to open or close the channel’s pore. Habermacher et al. have now added light-sensitive linkers onto the P2X receptor in a way that meant that different colors of light could be used to force parts of the receptor to come closer together or move apart. This allowed the pore to be opened and closed in response to changes in light. Habermacher et al. then studied the behavior of these modified receptors within a natural membrane and found that the light stimulated movements were similar to those seen with ATP. When the behavior of the receptor and light-sensitive linkers was studied using computer simulations, it led to new models of the P2X pore in the open and closed state. In these models, the open channel was more tightly packed than in the previous structure and an unexpected hinge-bending movement was seen to accompany the opening of the channel. It is hoped that this new approach will also be useful for probing how other membrane proteins change their shape when activated. DOI:http://dx.doi.org/10.7554/eLife.11050.002
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Affiliation(s)
- Chloé Habermacher
- Université de Strasbourg, Faculté de Pharmacie, Illkirch, France.,Centre National de la Recherche Scientifique, Laboratoire de Conception et Application de Molécules Bioactives, Unité Mixte de Recherche 7199, Équipe de Chimie et Neurobiologie Moléculaire, Illkirch, France
| | - Adeline Martz
- Université de Strasbourg, Faculté de Pharmacie, Illkirch, France.,Centre National de la Recherche Scientifique, Laboratoire de Conception et Application de Molécules Bioactives, Unité Mixte de Recherche 7199, Équipe de Chimie et Neurobiologie Moléculaire, Illkirch, France
| | - Nicolas Calimet
- ISIS, Unité Mixte de Recherche 7006, Laboratoire d'Ingénierie des Fonctions Moléculaires, Strasbourg, France
| | - Damien Lemoine
- Université de Strasbourg, Faculté de Pharmacie, Illkirch, France.,Centre National de la Recherche Scientifique, Laboratoire de Conception et Application de Molécules Bioactives, Unité Mixte de Recherche 7199, Équipe de Chimie et Neurobiologie Moléculaire, Illkirch, France
| | - Laurie Peverini
- Université de Strasbourg, Faculté de Pharmacie, Illkirch, France.,Centre National de la Recherche Scientifique, Laboratoire de Conception et Application de Molécules Bioactives, Unité Mixte de Recherche 7199, Équipe de Chimie et Neurobiologie Moléculaire, Illkirch, France
| | - Alexandre Specht
- Université de Strasbourg, Faculté de Pharmacie, Illkirch, France.,Centre National de la Recherche Scientifique, Laboratoire de Conception et Application de Molécules Bioactives, Unité Mixte de Recherche 7199, Équipe de Chimie et Neurobiologie Moléculaire, Illkirch, France
| | - Marco Cecchini
- ISIS, Unité Mixte de Recherche 7006, Laboratoire d'Ingénierie des Fonctions Moléculaires, Strasbourg, France
| | - Thomas Grutter
- Université de Strasbourg, Faculté de Pharmacie, Illkirch, France.,Centre National de la Recherche Scientifique, Laboratoire de Conception et Application de Molécules Bioactives, Unité Mixte de Recherche 7199, Équipe de Chimie et Neurobiologie Moléculaire, Illkirch, France
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76
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Lemoine D, Durand-de Cuttoli R, Mourot A. Optogenetic Control of Mammalian Ion Channels with Chemical Photoswitches. Methods Mol Biol 2016; 1408:177-93. [PMID: 26965123 DOI: 10.1007/978-1-4939-3512-3_12] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
In neurons, ligand-gated ion channels decode the chemical signal of neurotransmitters into an electric response, resulting in a transient excitation or inhibition. Neurotransmitters act on multiple receptor types and subtypes, with spatially and temporally precise patterns. Hence, understanding the neural function of a given receptor requires methods for its targeted, rapid activation/inactivation in defined brain regions. To address this, we have developed a versatile optochemical genetic strategy, which allows the reversible control of defined receptor subtypes in designated cell types, with millisecond and micrometer precision. In this chapter, we describe the engineering of light-activated and -inhibited neuronal nicotinic acetylcholine receptors, as well as their characterization and use in cultured cells.
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Affiliation(s)
- Damien Lemoine
- Sorbonne Universités, UPMC Univ Paris 06, UM 119, 9 Quai St Bernard, 75005, Paris, France.,Neuroscience Paris Seine, CNRS, UMR 8246, 75005, Paris, France.,Neuroscience Paris Seine, INSERM, U1130, 75005, Paris, France
| | - Romain Durand-de Cuttoli
- Sorbonne Universités, UPMC Univ Paris 06, UM 119, 9 Quai St Bernard, 75005, Paris, France.,Neuroscience Paris Seine, CNRS, UMR 8246, 75005, Paris, France.,Neuroscience Paris Seine, INSERM, U1130, 75005, Paris, France
| | - Alexandre Mourot
- Sorbonne Universités, UPMC Univ Paris 06, UM 119, 9 Quai St Bernard, 75005, Paris, France. .,Neuroscience Paris Seine, CNRS, UMR 8246, 75005, Paris, France. .,Neuroscience Paris Seine, INSERM, U1130, 75005, Paris, France.
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77
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Duarte L, Khriachtchev L, Fausto R, Reva I. Photoisomerization of azobenzenes isolated in cryogenic matrices. Phys Chem Chem Phys 2016; 18:16802-11. [DOI: 10.1039/c6cp02583h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
E–E and E–Z isomerization reactions were studied in azobenzene and its 2,2′ OH- and CH3-derivatives isolated in cryogenic matrices.
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Affiliation(s)
- Luís Duarte
- Department of Chemistry
- University of Helsinki
- FI-00014 Helsinki
- Finland
| | | | - Rui Fausto
- Department of Chemistry
- University of Coimbra
- P-3004-535 Coimbra
- Portugal
| | - Igor Reva
- Department of Chemistry
- University of Coimbra
- P-3004-535 Coimbra
- Portugal
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78
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Abstract
Severe loss of photoreceptor cells in inherited or acquired retinal degenerative diseases can result in partial loss of sight or complete blindness. The optogenetic strategy for restoration of vision utilizes optogenetic tools to convert surviving inner retinal neurons into photosensitive cells; thus, light sensitivity is imparted to the retina after the death of photoreceptor cells. Proof-of-concept studies, especially those using microbial rhodopsins, have demonstrated restoration of light responses in surviving retinal neurons and visually guided behaviors in animal models. Significant progress has also been made in improving microbial rhodopsin-based optogenetic tools, developing virus-mediated gene delivery, and targeting specific retinal neurons and subcellular compartments of retinal ganglion cells. In this article, we review the current status of the field and outline further directions and challenges to the advancement of this strategy toward clinical application and improvement in the outcomes of restored vision.
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Affiliation(s)
- Zhuo-Hua Pan
- Department of Ophthalmology, Kresge Eye Institute, Wayne State University School of Medicine, Detroit, Michigan 48201; , , .,Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, Michigan 48201;
| | - Qi Lu
- Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, Michigan 48201;
| | - Anding Bi
- Department of Ophthalmology, Kresge Eye Institute, Wayne State University School of Medicine, Detroit, Michigan 48201; , ,
| | | | - Gary W Abrams
- Department of Ophthalmology, Kresge Eye Institute, Wayne State University School of Medicine, Detroit, Michigan 48201; , ,
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79
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Broichhagen J, Damijonaitis A, Levitz J, Sokol KR, Leippe P, Konrad D, Isacoff EY, Trauner D. Orthogonal Optical Control of a G Protein-Coupled Receptor with a SNAP-Tethered Photochromic Ligand. ACS CENTRAL SCIENCE 2015; 1:383-393. [PMID: 27162996 PMCID: PMC4827557 DOI: 10.1021/acscentsci.5b00260] [Citation(s) in RCA: 84] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2015] [Indexed: 05/30/2023]
Abstract
The covalent attachment of synthetic photoswitches is a general approach to impart light sensitivity onto native receptors. It mimics the logic of natural photoreceptors and significantly expands the reach of optogenetics. Here we describe a novel photoswitch design-the photoswitchable orthogonal remotely tethered ligand (PORTL)-that combines the genetically encoded SNAP-tag with photochromic ligands connected to a benzylguanine via a long flexible linker. We use the method to convert the G protein-coupled receptor mGluR2, a metabotropic glutamate receptor, into a photoreceptor (SNAG-mGluR2) that provides efficient optical control over the neuronal functions of mGluR2: presynaptic inhibition and control of excitability. The PORTL approach enables multiplexed optical control of different native receptors using distinct bioconjugation methods. It should be broadly applicable since SNAP-tags have proven to be reliable, many SNAP-tagged receptors are already available, and photochromic ligands on a long leash are readily designed and synthesized.
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Affiliation(s)
- Johannes Broichhagen
- Department
of Chemistry, Ludwig-Maximilians-Universität
München, Butenandtstrasse
5-13, 81377 München, Germany
- Munich Center for Integrated Protein Science, Butenandtstrasse 5-13, 81377 München, Germany
| | - Arunas Damijonaitis
- Department
of Chemistry, Ludwig-Maximilians-Universität
München, Butenandtstrasse
5-13, 81377 München, Germany
- Munich Center for Integrated Protein Science, Butenandtstrasse 5-13, 81377 München, Germany
| | - Joshua Levitz
- Department
of Molecular and Cell Biology, University
of California, Berkeley, California 94720, United States
| | - Kevin R. Sokol
- Department
of Chemistry, Ludwig-Maximilians-Universität
München, Butenandtstrasse
5-13, 81377 München, Germany
- Munich Center for Integrated Protein Science, Butenandtstrasse 5-13, 81377 München, Germany
| | - Philipp Leippe
- Department
of Chemistry, Ludwig-Maximilians-Universität
München, Butenandtstrasse
5-13, 81377 München, Germany
- Munich Center for Integrated Protein Science, Butenandtstrasse 5-13, 81377 München, Germany
| | - David Konrad
- Department
of Chemistry, Ludwig-Maximilians-Universität
München, Butenandtstrasse
5-13, 81377 München, Germany
- Munich Center for Integrated Protein Science, Butenandtstrasse 5-13, 81377 München, Germany
| | - Ehud Y. Isacoff
- Department
of Molecular and Cell Biology, University
of California, Berkeley, California 94720, United States
- Helen
Wills Neuroscience Institute, University
of California, Berkeley, California 94720, United States
- Physical
Bioscience Division, Lawrence Berkeley National
Laboratory, Berkeley, California 94720, United States
| | - Dirk Trauner
- Department
of Chemistry, Ludwig-Maximilians-Universität
München, Butenandtstrasse
5-13, 81377 München, Germany
- Munich Center for Integrated Protein Science, Butenandtstrasse 5-13, 81377 München, Germany
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80
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Dong M, Babalhavaeji A, Samanta S, Beharry AA, Woolley GA. Red-Shifting Azobenzene Photoswitches for in Vivo Use. Acc Chem Res 2015; 48:2662-70. [PMID: 26415024 DOI: 10.1021/acs.accounts.5b00270] [Citation(s) in RCA: 417] [Impact Index Per Article: 46.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Recently, there has been a great deal of interest in using the photoisomerization of azobenzene compounds to control specific biological targets in vivo. These azo compounds can be used as research tools or, in principle, could act as optically controlled drugs. Such "photopharmaceuticals" offer the prospect of targeted drug action and an unprecedented degree of temporal control. A key feature of azo compounds designed to photoswitch in vivo is the wavelength of light required to cause the photoisomerization. To pass through tissue such as the human hand, wavelengths in the red, far-red, or ideally near infrared region are required. This Account describes our attempts to produce such azo compounds. Introducing electron-donating or push/pull substituents at the para positions delocalizes the azobenzene chromophore and leads to long wavelength absorption but usually also lowers the thermal barrier to interconversion of the isomers. Fast thermal relaxation means it is difficult to produce a large steady state fraction of the cis isomer. Thus, specifically activating or inhibiting a biological process with the cis isomer would require an impractically bright light source. We have found that introducing substituents at all four ortho positions leads to azo compounds with a number of unusual properties that are useful for in vivo photoswitching. When the para substituents are amide groups, these tetra-ortho substituted azo compounds show unusually slow thermal relaxation rates and enhanced separation of n-π* transitions of cis and trans isomers compared to analogues without ortho substituents. When para positions are substituted with amino groups, ortho methoxy groups greatly stabilize the azonium form of the compounds, in which the azo group is protonated. Azonium ions absorb strongly in the red region of the spectrum and can reach into the near-IR. These azonium ions can exhibit robust cis-trans isomerization in aqueous solutions at neutral pH. By varying the nature of ortho substituents, together with the number and nature of meta and para substituents, long wavelength switching, stability to photobleaching, stability to hydrolysis, and stability to reduction by thiols can all be crafted into a photoswitch. Some of these newly developed photoswitches can be used in whole blood and show promise for effective use in vivo. It is hoped they can be combined with appropriate bioactive targets to realize the potential of photopharmacology.
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Affiliation(s)
- Mingxin Dong
- Department
of Chemistry, University of Toronto, 80 St. George St., Toronto, ON M5S
3H6, Canada
| | | | - Subhas Samanta
- Department
of Chemistry, University of Toronto, 80 St. George St., Toronto, ON M5S
3H6, Canada
- Department
of Chemistry, University of Pittsburgh, Chevron Science Center, 219 Parkman
Avenue, Pittsburgh, Pennsylvania 15260, United States
| | - Andrew A. Beharry
- Department
of Chemistry, University of Toronto, 80 St. George St., Toronto, ON M5S
3H6, Canada
- Department
of Chemistry, Stanford University, 333 Campus Drive, Mudd Building, Stanford, California 94305-4401, United States
| | - G. Andrew Woolley
- Department
of Chemistry, University of Toronto, 80 St. George St., Toronto, ON M5S
3H6, Canada
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81
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Xu Z, Shi L, Jiang D, Cheng J, Shao X, Li Z. Azobenzene Modified Imidacloprid Derivatives as Photoswitchable Insecticides: Steering Molecular Activity in a Controllable Manner. Sci Rep 2015; 5:13962. [PMID: 26434681 PMCID: PMC4593031 DOI: 10.1038/srep13962] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2014] [Accepted: 08/10/2015] [Indexed: 12/23/2022] Open
Abstract
Incorporating the photoisomerizable azobenzene into imidacloprid produced a photoswitchable insecticidal molecule as the first neonicotinoid example of remote control insecticide performance with spatiotemporal resolution. The designed photoswitchable insecticides showed distinguishable activity against Musca both in vivo and in vitro upon irradiation. Molecular docking study further suggested the binding difference of the two photoisomers. The generation of these photomediated insecticides provides novel insight into the insecticidal activity facilitating further investigation on the functions of insect nicotinic acetylcholine receptors and opens a novel way to control and study insect behavior on insecticide poisoning using light.
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Affiliation(s)
- Zhiping Xu
- Shanghai Key Laboratory of Chemical Biology, School of Pharmacy, East China University of Science and Technology, Shanghai, 200237, China
| | - Lina Shi
- Shanghai Key Laboratory of Chemical Biology, School of Pharmacy, East China University of Science and Technology, Shanghai, 200237, China
| | - Danping Jiang
- Shanghai Key Laboratory of Chemical Biology, School of Pharmacy, East China University of Science and Technology, Shanghai, 200237, China
| | - Jiagao Cheng
- Shanghai Key Laboratory of Chemical Biology, School of Pharmacy, East China University of Science and Technology, Shanghai, 200237, China
| | - Xusheng Shao
- Shanghai Key Laboratory of Chemical Biology, School of Pharmacy, East China University of Science and Technology, Shanghai, 200237, China
| | - Zhong Li
- Shanghai Key Laboratory of Chemical Biology, School of Pharmacy, East China University of Science and Technology, Shanghai, 200237, China.,Shanghai Collaborative Innovation Center for Biomanufacturing Technology, 130 Meilong Road, Shanghai 200237, China
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82
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Habermacher C, Dunning K, Chataigneau T, Grutter T. Molecular structure and function of P2X receptors. Neuropharmacology 2015; 104:18-30. [PMID: 26231831 DOI: 10.1016/j.neuropharm.2015.07.032] [Citation(s) in RCA: 79] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2015] [Revised: 07/23/2015] [Accepted: 07/26/2015] [Indexed: 12/22/2022]
Abstract
ATP-gated P2X receptors are trimeric ion channels selective to cations. Recent progress in the molecular biophysics of these channels enables a better understanding of their function. In particular, data obtained from biochemical, electrophysiogical and molecular engineering in the light of recent X-ray structures now allow delineation of the principles of ligand binding, channel opening and allosteric modulation. However, although a picture emerges as to how ATP triggers channel opening, there are a number of intriguing questions that remain to be answered, in particular how the pore itself opens in response to ATP and how the intracellular domain, for which structural information is limited, moves during activation. In this review, we provide a summary of functional studies in the context of the post-structure era, aiming to clarify our understanding of the way in which P2X receptors function in response to ATP binding, as well as the mechanism by which allosteric modulators are able to regulate receptor function. This article is part of the Special Issue entitled 'Purines in Neurodegeneration and Neuroregeneration'.
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Affiliation(s)
- Chloé Habermacher
- Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7199, Laboratoire de Conception et Application de Molécules Bioactives, Équipe de Chimie et Neurobiologie Moléculaire, F-67400, Illkirch, France; Université de Strasbourg, Faculté de Pharmacie, F-67400, Illkirch, France
| | - Kate Dunning
- Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7199, Laboratoire de Conception et Application de Molécules Bioactives, Équipe de Chimie et Neurobiologie Moléculaire, F-67400, Illkirch, France; Université de Strasbourg, Faculté de Pharmacie, F-67400, Illkirch, France
| | - Thierry Chataigneau
- Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7199, Laboratoire de Conception et Application de Molécules Bioactives, Équipe de Chimie et Neurobiologie Moléculaire, F-67400, Illkirch, France; Université de Strasbourg, Faculté de Pharmacie, F-67400, Illkirch, France
| | - Thomas Grutter
- Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7199, Laboratoire de Conception et Application de Molécules Bioactives, Équipe de Chimie et Neurobiologie Moléculaire, F-67400, Illkirch, France; Université de Strasbourg, Faculté de Pharmacie, F-67400, Illkirch, France.
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83
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Abstract
Light is a fascinating phenomenon that ties together physics, chemistry, and biology. It is unmatched in its ability to confer information with temporal and spatial precision and has been used to map objects on the scale of tens of nanometers (10(-8) m) to light years (10(16) m). This information, gathered through super-resolution microscopes or space-based telescopes, is ultimately funneled through the human visual system, which is a miracle in itself. It allows us to see the Andromeda galaxy at night, an object that is 2.5 million light years away and very dim, and ski the next day in bright sunlight at an intensity that is 12 orders of magnitude higher. Human vision is only one of many photoreceptive systems that have evolved on earth and are found in all kingdoms of life. These systems rely on molecular photoswitches, such as retinal or tetrapyrrols, which undergo transient bond isomerizations or bond formations upon irradiation. The set of chromophores that have been employed in Nature for this purpose is surprisingly small. Nevertheless, they control a wide variety of biological functions, which have recently been significantly increased through the rapid development of optogenetics. Optogenetics originated as an effort to control neural function with genetically encoded photoreceptors that use abundant chromophores, in particular retinal. It now covers a variety of cellular functions other than excitability and has revolutionized the control of biological pathways in neuroscience and beyond. Chemistry has provided a large repertoire of synthetic photoswitches with highly tunable properties. Like their natural counterparts, these chromophores can be attached to proteins to effectively put them under optical control. This approach has enabled a new type of synthetic photobiology that has gone under various names to distinguish it from optogenetics. We now call it photopharmacology. Here we trace our involvement in this field, starting with the first light-sensitive potassium channel (SPARK) and concluding with our most recent work on photoswitchable fatty acids. Instead of simply providing a historical account of our efforts, we discuss the design criteria that guided our choice of molecules and receptors. As such, we hope to provide a roadmap to success in photopharmacology and make a case as to why synthetic photoswitches, properly designed and made available through well-planned and efficient syntheses, should have a bright future in biology and medicine.
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Affiliation(s)
- Johannes Broichhagen
- Department
of Chemistry and
Center for Integrated Protein Science, Ludwig Maximilians University Munich, Butenandtstraße 5-13, 81377 Munich, Germany
| | - James Allen Frank
- Department
of Chemistry and
Center for Integrated Protein Science, Ludwig Maximilians University Munich, Butenandtstraße 5-13, 81377 Munich, Germany
| | - Dirk Trauner
- Department
of Chemistry and
Center for Integrated Protein Science, Ludwig Maximilians University Munich, Butenandtstraße 5-13, 81377 Munich, Germany
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84
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Optogenetic Vision Restoration Using Rhodopsin for Enhanced Sensitivity. Mol Ther 2015; 23:1562-71. [PMID: 26137852 PMCID: PMC4817926 DOI: 10.1038/mt.2015.121] [Citation(s) in RCA: 92] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2015] [Accepted: 06/22/2015] [Indexed: 12/26/2022] Open
Abstract
Retinal disease is one of the most active areas of gene therapy, with clinical trials ongoing in the United States for five diseases. There are currently no treatments for patients with late-stage disease in which photoreceptors have been lost. Optogenetic gene therapies are in development, but, to date, have suffered from the low light sensitivity of microbial opsins, such as channelrhodopsin and halorhodopsin, and azobenzene-based photoswitches. Several groups have shown that photoreceptive G-protein-coupled receptors (GPCRs) can be expressed heterologously, and photoactivate endogenous Gi/o signaling. We hypothesized such a GPCR could increase sensitivity due to endogenous signal amplification. We targeted vertebrate rhodopsin to retinal ON-bipolar cells of blind rd1 mice and observed restoration of: (i) light responses in retinal explants, (ii) visually-evoked potentials in visual cortex in vivo, and (iii) two forms of visually-guided behavior: innate light avoidance and discrimination of temporal light patterns in the context of fear conditioning. Importantly, both the light responses of the retinal explants and the visually-guided behavior occurred reliably at light levels that were two to three orders of magnitude dimmer than required for channelrhodopsin. Thus, gene therapy with native light-gated GPCRs presents a novel approach to impart light sensitivity for visual restoration in a useful range of illumination.
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85
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Damijonaitis A, Broichhagen J, Urushima T, Hüll K, Nagpal J, Laprell L, Schönberger M, Woodmansee DH, Rafiq A, Sumser MP, Kummer W, Gottschalk A, Trauner D. AzoCholine Enables Optical Control of Alpha 7 Nicotinic Acetylcholine Receptors in Neural Networks. ACS Chem Neurosci 2015; 6:701-7. [PMID: 25741856 DOI: 10.1021/acschemneuro.5b00030] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Nicotinic acetylcholine receptors (nAChRs) are essential for cellular communication in higher organisms. Even though a vast pharmacological toolset to study cholinergic systems has been developed, control of endogenous neuronal nAChRs with high spatiotemporal precision has been lacking. To address this issue, we have generated photoswitchable nAChR agonists and re-evaluated the known photochromic ligand, BisQ. Using electrophysiology, we found that one of our new compounds, AzoCholine, is an excellent photoswitchable agonist for neuronal α7 nAChRs, whereas BisQ was confirmed to be an agonist for the muscle-type nAChR. AzoCholine could be used to modulate cholinergic activity in a brain slice and in dorsal root ganglion neurons. In addition, we demonstrate light-dependent perturbation of behavior in the nematode, Caenorhabditis elegans.
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Affiliation(s)
- Arunas Damijonaitis
- Department
of Chemistry and Pharmacology, Ludwig-Maximilians-Universität München, Center of Integrated Protein Science Munich, Munich D-81377, Germany
| | - Johannes Broichhagen
- Department
of Chemistry and Pharmacology, Ludwig-Maximilians-Universität München, Center of Integrated Protein Science Munich, Munich D-81377, Germany
| | - Tatsuya Urushima
- Department
of Chemistry and Pharmacology, Ludwig-Maximilians-Universität München, Center of Integrated Protein Science Munich, Munich D-81377, Germany
| | - Katharina Hüll
- Department
of Chemistry and Pharmacology, Ludwig-Maximilians-Universität München, Center of Integrated Protein Science Munich, Munich D-81377, Germany
| | - Jatin Nagpal
- Buchmann
Institute for Molecular Life Sciences, Institute of Biochemistry, Johann Wolfgang Goethe-Universität, Frankfurt D-60438, Germany
| | - Laura Laprell
- Department
of Chemistry and Pharmacology, Ludwig-Maximilians-Universität München, Center of Integrated Protein Science Munich, Munich D-81377, Germany
| | - Matthias Schönberger
- Department
of Chemistry and Pharmacology, Ludwig-Maximilians-Universität München, Center of Integrated Protein Science Munich, Munich D-81377, Germany
| | - David H. Woodmansee
- Department
of Chemistry and Pharmacology, Ludwig-Maximilians-Universität München, Center of Integrated Protein Science Munich, Munich D-81377, Germany
| | - Amir Rafiq
- Institute
for Anatomy and Cell Biology, Justus-Liebig-Universität, German Center for Lung Research, Giessen D-35385, Germany
| | - Martin P. Sumser
- Department
of Chemistry and Pharmacology, Ludwig-Maximilians-Universität München, Center of Integrated Protein Science Munich, Munich D-81377, Germany
| | - Wolfgang Kummer
- Institute
for Anatomy and Cell Biology, Justus-Liebig-Universität, German Center for Lung Research, Giessen D-35385, Germany
| | - Alexander Gottschalk
- Buchmann
Institute for Molecular Life Sciences, Institute of Biochemistry, Johann Wolfgang Goethe-Universität, Frankfurt D-60438, Germany
| | - Dirk Trauner
- Department
of Chemistry and Pharmacology, Ludwig-Maximilians-Universität München, Center of Integrated Protein Science Munich, Munich D-81377, Germany
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86
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Van der Berg JP, Velema WA, Szymanski W, Driessen AJM, Feringa BL. Controlling the activity of quorum sensing autoinducers with light. Chem Sci 2015; 6:3593-3598. [PMID: 29511521 PMCID: PMC5659144 DOI: 10.1039/c5sc00215j] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2015] [Accepted: 04/25/2015] [Indexed: 01/19/2023] Open
Abstract
Bacteria use Quorum Sensing (QS) to organize into communities and synchronize gene expression. Here we report on a method to externally interfere with QS system using light.
Bacteria use a communication system, called quorum sensing (QS), to organize into communities and synchronize gene expression to promote virulence and secure survival. Here we report on a proof-of-principle for externally interfering with this bacterial communication system, using light. By employing photoswitchable small molecules, we were able to photocontrol the QS-related bioluminescence in an Escherichia coli reporter strain, and the expression of target QS genes and pyocyanin production in Pseudomonas aeruginosa.
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Affiliation(s)
- J P Van der Berg
- Molecular Microbiology , Groningen Biomolecular Sciences and Biotechnology Institute , University of Groningen , Nijenborgh 7, 9747 AG , Groningen , The Netherlands .
| | - W A Velema
- Center for Systems Chemistry , Stratingh Institute for Chemistry , University of Groningen , Nijenborgh 4, 9747 AG , Groningen , The Netherlands .
| | - W Szymanski
- Center for Systems Chemistry , Stratingh Institute for Chemistry , University of Groningen , Nijenborgh 4, 9747 AG , Groningen , The Netherlands . .,Department of Radiology , University of Groningen , University Medical Centre Groningen , Groningen , The Netherlands
| | - A J M Driessen
- Molecular Microbiology , Groningen Biomolecular Sciences and Biotechnology Institute , University of Groningen , Nijenborgh 7, 9747 AG , Groningen , The Netherlands .
| | - B L Feringa
- Center for Systems Chemistry , Stratingh Institute for Chemistry , University of Groningen , Nijenborgh 4, 9747 AG , Groningen , The Netherlands .
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87
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Broichhagen J, Frank JA, Johnston NR, Mitchell RK, Šmid K, Marchetti P, Bugliani M, Rutter GA, Trauner D, Hodson DJ. A red-shifted photochromic sulfonylurea for the remote control of pancreatic beta cell function. Chem Commun (Camb) 2015; 51:6018-21. [PMID: 25744824 DOI: 10.1039/c5cc01224d] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Azobenzene photoresponsive elements can be installed on sulfonylureas, yielding optical control over pancreatic beta cell function and insulin release. An obstacle to such photopharmacological approaches remains the use of ultraviolet-blue illumination. Herein, we synthesize and test a novel yellow light-activated sulfonylurea based on a heterocyclic azobenzene bearing a push-pull system.
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Affiliation(s)
- J Broichhagen
- Department of Chemistry and Center for Integrated Protein Science, LMU Munich, Munich, Germany.
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88
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QIN CG, LU CX, OUYANG GW, QIN K, ZHANG F, SHI HT, WANG XH. Progress of Azobenzene-based Photoswitchable Molecular Probes and Sensory Chips for Chemical and Biological Analysis. CHINESE JOURNAL OF ANALYTICAL CHEMISTRY 2015. [DOI: 10.1016/s1872-2040(15)60809-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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89
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Wang J, Zhang YM, Zhang XJ, Zhao XJ, Liu Y. Light-Controlled [3]Pseudorotaxane Based on Tetrasulfonated 1,5-Dinaphtho-32-Crown-8 and α-Cyclodextrin. ASIAN J ORG CHEM 2015. [DOI: 10.1002/ajoc.201402238] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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90
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Controlling ionotropic and metabotropic glutamate receptors with light: principles and potential. Curr Opin Pharmacol 2015; 20:135-43. [PMID: 25573450 DOI: 10.1016/j.coph.2014.12.008] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2014] [Revised: 12/08/2014] [Accepted: 12/08/2014] [Indexed: 01/24/2023]
Abstract
Light offers unique advantages for studying and manipulating biomolecules and the cellular processes that they control. Optical control of ionotropic and metabotropic glutamate receptors has garnered significant interest, since these receptors are central to signaling at neuronal synapses and only optical approaches provide the spatial and temporal resolution required to directly probe receptor function in cells and tissue. Following the classical method of glutamate photo-uncaging, recently developed methods have added other forms of remote control, including those with high molecular specificity and genetic targeting. These tools open the door to the direct optical control of synaptic transmission and plasticity, as well as the probing of native receptor function in intact neural circuits.
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91
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Wutz D, Falenczyk C, Kuzmanovic N, König B. Functionalization of photochromic dithienylmaleimides. RSC Adv 2015. [DOI: 10.1039/c5ra00015g] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
Synthetic routes for the functionalization of photochromic dithienylmaleimides at three different positions are reported.
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Affiliation(s)
- D. Wutz
- Institute of Organic Chemistry
- University of Regensburg
- D-93051 Regensburg
- Germany
| | - C. Falenczyk
- Institute of Organic Chemistry
- University of Regensburg
- D-93051 Regensburg
- Germany
| | - N. Kuzmanovic
- Institute of Organic Chemistry
- University of Regensburg
- D-93051 Regensburg
- Germany
| | - B. König
- Institute of Organic Chemistry
- University of Regensburg
- D-93051 Regensburg
- Germany
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92
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Mruk K, Kobertz WR. Bioreactive Tethers. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2015; 869:77-100. [DOI: 10.1007/978-1-4939-2845-3_5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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93
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Flipping the Photoswitch: Ion Channels Under Light Control. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2015; 869:101-17. [DOI: 10.1007/978-1-4939-2845-3_6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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94
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Restoration of visual function by expression of a light-gated mammalian ion channel in retinal ganglion cells or ON-bipolar cells. Proc Natl Acad Sci U S A 2014; 111:E5574-83. [PMID: 25489083 DOI: 10.1073/pnas.1414162111] [Citation(s) in RCA: 85] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Most inherited forms of blindness are caused by mutations that lead to photoreceptor cell death but spare second- and third-order retinal neurons. Expression of the light-gated excitatory mammalian ion channel light-gated ionotropic glutamate receptor (LiGluR) in retinal ganglion cells (RGCs) of the retina degeneration (rd1) mouse model of blindness was previously shown to restore some visual functions when stimulated by UV light. Here, we report restored retinal function in visible light in rodent and canine models of blindness through the use of a second-generation photoswitch for LiGluR, maleimide-azobenzene-glutamate 0 with peak efficiency at 460 nm (MAG0(460)). In the blind rd1 mouse, multielectrode array recordings of retinal explants revealed robust and uniform light-evoked firing when LiGluR-MAG0(460) was targeted to RGCs and robust but diverse activity patterns in RGCs when LiGluR-MAG0(460) was targeted to ON-bipolar cells (ON-BCs). LiGluR-MAG0(460) in either RGCs or ON-BCs of the rd1 mouse reinstated innate light-avoidance behavior and enabled mice to distinguish between different temporal patterns of light in an associative learning task. In the rod-cone dystrophy dog model of blindness, LiGluR-MAG0(460) in RGCs restored robust light responses to retinal explants and intravitreal delivery of LiGluR and MAG0(460) was well tolerated in vivo. The results in both large and small animal models of photoreceptor degeneration provide a path to clinical translation.
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95
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Acetylcholine, GABA and neuronal networks: a working hypothesis for compensations in the dystrophic brain. Brain Res Bull 2014; 110:1-13. [PMID: 25445612 DOI: 10.1016/j.brainresbull.2014.10.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2014] [Revised: 10/02/2014] [Accepted: 10/06/2014] [Indexed: 11/22/2022]
Abstract
Duchenne muscular dystrophy (DMD), a genetic disease arising from a mutation in the dystrophin gene, is characterized by muscle failure and is often associated with cognitive deficits. Studies of the dystrophic brain on the murine mdx model of DMD provide evidence of morphological and functional alterations in the central nervous system (CNS) possibly compatible with the cognitive impairment seen in DMD. However, while some of the alterations reported are a direct consequence of the absence of dystrophin, others seem to be associated only indirectly. In this review we reevaluate the literature in order to formulate a possible explanation for the cognitive impairments associated with DMD. We present a working hypothesis, demonstrated as an integrated neuronal network model, according to which within the cascade of events leading to cognitive impairments there are compensatory mechanisms aimed to maintain functional stability via perpetual adjustments of excitatory and inhibitory components. Such ongoing compensatory response creates continuous perturbations that disrupt neuronal functionality in terms of network efficiency. We have theorized that in this process acetylcholine and network oscillations play a central role. A better understating of these mechanisms could provide a useful diagnostic index of the disease's progression and, perhaps, the correct counterbalance of this process might help to prevent deterioration of the CNS in DMD. Furthermore, the involvement of compensatory mechanisms in the CNS could be extended beyond DMD and possibly help to clarify other physio-pathological processes of the CNS.
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96
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Optical control of insulin release using a photoswitchable sulfonylurea. Nat Commun 2014; 5:5116. [PMID: 25311795 PMCID: PMC4208094 DOI: 10.1038/ncomms6116] [Citation(s) in RCA: 95] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2014] [Accepted: 09/01/2014] [Indexed: 12/15/2022] Open
Abstract
Sulfonylureas are widely prescribed for the treatment of type 2 diabetes mellitus (T2DM). Through their actions on ATP-sensitive potassium (KATP) channels, sulfonylureas boost insulin release from the pancreatic beta cell mass to restore glucose homeostasis. A limitation of these compounds is the elevated risk of developing hypoglycemia and cardiovascular disease, both potentially fatal complications. Here, we describe the design and development of a photoswitchable sulfonylurea, JB253, which reversibly and repeatedly blocks KATP channel activity following exposure to violet-blue light. Using in situ imaging and hormone assays, we further show that JB253 bestows light sensitivity upon rodent and human pancreatic beta cell function. Thus, JB253 enables the optical control of insulin release and may offer a valuable research tool for the interrogation of KATP channel function in health and T2DM.
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97
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Giocomo LM. Large scale in vivo recordings to study neuronal biophysics. Curr Opin Neurobiol 2014; 32:1-7. [PMID: 25291296 DOI: 10.1016/j.conb.2014.09.009] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2014] [Accepted: 09/21/2014] [Indexed: 11/19/2022]
Abstract
Over the last several years, technological advances have enabled researchers to more readily observe single-cell membrane biophysics in awake, behaving animals. Studies utilizing these technologies have provided important insights into the mechanisms generating functional neural codes in both sensory and non-sensory cortical circuits. Crucial for a deeper understanding of how membrane biophysics control circuit dynamics however, is a continued effort to move toward large scale studies of membrane biophysics, in terms of the numbers of neurons and ion channels examined. Future work faces a number of theoretical and technical challenges on this front but recent technological developments hold great promise for a larger scale understanding of how membrane biophysics contribute to circuit coding and computation.
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Affiliation(s)
- Lisa M Giocomo
- Department of Neurobiology, Stanford University School of Medicine, 299 Campus Drive, Stanford, CA 94305, United States.
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98
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Beyer HM, Naumann S, Weber W, Radziwill G. Optogenetic control of signaling in mammalian cells. Biotechnol J 2014; 10:273-83. [DOI: 10.1002/biot.201400077] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2014] [Revised: 07/16/2014] [Accepted: 08/13/2014] [Indexed: 11/08/2022]
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99
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Broichhagen J, Trauner D. The in vivo chemistry of photoswitched tethered ligands. Curr Opin Chem Biol 2014; 21:121-7. [PMID: 25108802 DOI: 10.1016/j.cbpa.2014.07.008] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2014] [Accepted: 07/10/2014] [Indexed: 11/25/2022]
Abstract
Nature's photoreceptors are typically composed of a chromophore that is covalently bound to a receptor protein at the top of a signaling cascade. The protein can function as a G-protein coupled receptor (GPCR), an ion channel, or as an enzyme. This logic can be mimicked with synthetic photoswitches, such as azobenzenes, that are linked to naturally 'blind' transmembrane proteins using in vivo-chemistry. The resulting semisynthetic receptors can be employed to optically control cellular functions, especially in neurons, and influence the behavior of animals with the exquisite temporal and spatial precision of light.
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Affiliation(s)
- Johannes Broichhagen
- Department of Chemistry, Ludwig-Maximilian-University Munich, and Munich Center for Integrated Protein Science, Butenandtstrasse 5-13, Munich 81377, Germany
| | - Dirk Trauner
- Department of Chemistry, Ludwig-Maximilian-University Munich, and Munich Center for Integrated Protein Science, Butenandtstrasse 5-13, Munich 81377, Germany.
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100
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Schönberger M, Althaus M, Fronius M, Clauss W, Trauner D. Controlling epithelial sodium channels with light using photoswitchable amilorides. Nat Chem 2014; 6:712-9. [PMID: 25054942 DOI: 10.1038/nchem.2004] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2013] [Accepted: 06/12/2014] [Indexed: 11/09/2022]
Abstract
Amiloride is a widely used diuretic that blocks epithelial sodium channels (ENaCs). These heterotrimeric transmembrane proteins, assembled from β, γ and α or δ subunits, effectively control water transport across epithelia and sodium influx into non-epithelial cells. The functional role of δβγENaC in various organs, including the human brain, is still poorly understood and no pharmacological tools are available for the functional differentiation between α- and δ-containing ENaCs. Here we report several photoswitchable versions of amiloride. One compound, termed PA1, enables the optical control of ENaC channels, in particular the δβγ isoform, by switching between blue and green light, or by turning on and off blue light. PA1 was used to modify functionally δβγENaC in amphibian and mammalian cells. We also show that PA1 can be used to differentiate between δβγENaC and αβγENaC in a model for the human lung epithelium.
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Affiliation(s)
- Matthias Schönberger
- Department of Chemistry and Center for Integrated Protein Science, Ludwig Maximilians-Universität München, Butenandtstraße 5-13 (F4.086), 81377 Munich, Germany
| | - Mike Althaus
- Institute of Animal Physiology, Justus Liebig University Giessen, Heinrich-Buff-Ring 26, 35392 Giessen, Germany
| | - Martin Fronius
- 1] Institute of Animal Physiology, Justus Liebig University Giessen, Heinrich-Buff-Ring 26, 35392 Giessen, Germany [2] Department of Physiology, University of Otago, PO Box 913, Dunedin 9054, New Zealand
| | - Wolfgang Clauss
- Institute of Animal Physiology, Justus Liebig University Giessen, Heinrich-Buff-Ring 26, 35392 Giessen, Germany
| | - Dirk Trauner
- Department of Chemistry and Center for Integrated Protein Science, Ludwig Maximilians-Universität München, Butenandtstraße 5-13 (F4.086), 81377 Munich, Germany
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