Quantitative self-assembly of a purely organic three-dimensional catenane in water

Discovery of an all-donor aromatic [2]catenane

We report herein the first all-donor aromatic [2]catenane formed through dynamic combinatorial chemistry, using single component libraries. The building block is a benzo[1,2-b:4,5-b′]dithiophene derivative, a π-donor molecule, with cysteine appendages that allow for disulfide exchange. The hydrophobic effect plays an essential role in the formation of the all-donor [2]catenane. The design of the building block allows the formation of a quasi-fused pentacyclic core, which enhances the stacking interactions between the cores. The [2]catenane has chiro-optical and fluorescent properties, being also the first known DCC-disulphide-based interlocked molecule to be fluorescent.

An all-donor [2]catenane has been synthesised via dynamic combinatorial chemistry. It features stacked benzodithiophenes which are quasi-pentacyclic through hydrogen bonding.

Woven Polymer Networks via the Topological Transformation of a [2]Catenane

Weaving technology has been widely used to manufacture macroscopic fabrics to meet the artistic and practical needs of humanity for thousands of years. However, the fabrication of molecular fabrics with fascinating topologies and unique mechanical properties represents a significant challenge. Herein, we describe a topological transformation strategy to construct woven polymer networks (WPNs) at the molecular level via ring-opening metathesis polymerization (ROMP) of a zinc-template [2]catenane. The key feature of this approach is the exploitation of the pre-existing catenane crossing points that maintain the dense woven structure and the flexible alkyl chains on the [2]catenane that synergistically work with the crossing points to modulate the physicochemical and mechanical properties of the woven materials. As a result, the WPN possesses a certain degree of flexibility and stretchability, as well as high thermostability and mechanical robustness. Furthermore, we could remove the zinc ions to endow the WPN with more degrees of freedom and then enhance its mechanical behaviors by remetalation. This study not only provides a novel strategy toward woven materials with intriguing structural features and emergent mechanical adaptivities, but also highlights that mechanically interlocked molecules could offer unique opportunities for the construction of smart supramolecular materials with peculiar interlaced topologies at the molecular scale.

Self-assembled poly-catenanes from supramolecular toroidal building blocks

Mechanical interlocking of molecules (catenation) is a nontrivial challenge in modern synthetic chemistry and materials science^1,2. One strategy to achieve catenation is the design of pre-annular molecules that are capable of both efficient cyclization and of pre-organizing another precursor to engage in subsequent interlocking^3-9. This task is particularly difficult when the annular target is composed of a large ensemble of molecules, that is, when it is a supramolecular assembly. However, the construction of such unprecedented assemblies would enable the visualization of nontrivial nanotopologies through microscopy techniques, which would not only satisfy academic curiosity but also pave the way to the development of materials with nanotopology-derived properties. Here we report the synthesis of such a nanotopology using fibrous supramolecular assemblies with intrinsic curvature. Using a solvent-mixing strategy, we kinetically organized a molecule that can elongate into toroids with a radius of about 13 nanometres. Atomic force microscopy on the resulting nanoscale toroids revealed a high percentage of catenation, which is sufficient to yield 'nanolympiadane'¹⁰, a nanoscale catenane composed of five interlocked toroids. Spectroscopic and theoretical studies suggested that this unusually high degree of catenation stems from the secondary nucleation of the precursor molecules around the toroids. By modifying the self-assembly protocol to promote ring closure and secondary nucleation, a maximum catenation number of 22 was confirmed by atomic force microscopy.

Size-selective Catalytic Polymer Acylation with a Molecular Tetrahedron

Selective catalysis at the molecular level represents a cornerstone of chemical synthesis. However, it still remains an open question how to elevate tunable catalysis to larger length scales to functionalize whole polymer chains in a selective manner. We now report a hydrazone-linked tetrahedron with wide openings, which acts as a catalyst to size-selectively functionalize polydisperse polymer mixtures. Our experimental and computational evidence supports a dual role of the hydrazone-linked tetrahedron. To accelerate functionalization of the polymer substrates, the tetrahedron (i) unfolds the polymer substrates and/or breaks the polymer aggregates as well as (ii) enables target sites (amino groups) on the polymers to coordinate with catalytic units (triglyme) attached to the tetrahedron. With the tetrahedron as the catalyst, we find that the reactivity of the shorter polymers increases selectively. Our findings enable the possibility to engineer hydrolytically stable molecular polyhedra as organocatalysts for size-selective polymer modification.

A hydrogen-bonded polymer constructed from mechanically interlocked, suit[1]ane monomers

A T-shaped 2,4,7-substituted benzimidazolium “axle” with two ester functionalities and a 24-membered crown ether “wheel” with appendages containing terminal olefin groups were threaded — axle through wheel — to form a [2]pseudorotaxane. Grubbs’ ring-closing metathesis (RCM) was then used to form a third loop and create a bicyclic cage that fully encapsulates the axle and permanently interlocks the two molecular components creating a suit[1]ane. There are no bulky groups on the axle to prevent unthreading, but the axle is trapped due to the cage-like nature of the newly created polyether host. After hydrolysis of the esters groups to carboxylic acids, this novel mechanically interlocked molecule (MIM) polymerizes in the solid state. The structure of the resulting supramolecular polymer was determined by single-crystal X-ray diffraction and contains linear one-dimensional tapes of suit[1]ane monomers linked by intermolecular hydrogen bonding between the carboxylic acid groups.

A cyclic bis[2]catenane metallacage

Catenated cages represent chemistry’s challenging synthetic targets because a three-dimensional assembly is necessary for their formation. Herein, a cyclic bis[2]catenane is constructed through the coordination-driven self-assembly of the interlocked bis-metallacage, by the 90° Pt(II) heteroligation of the endo-functionalized double-bridged tweezer bearing pyridyl moieties and the tetra-carboxylated linker. NMR spectrometry, X-ray crystallography and mass spectrometry confirm the formation of a cyclic bis[2]catenane with “∞”-shaped topology via a 14-component self-assembly. Particularly, reversibly responsive transformation between the bis[2]catenane and the bis-metallacage can be realized by guest exchange, concentration effect and solvent effect. This work represents a novel example of a cyclic cage-based [2]catenane oligomer.

Catenated cages are challenging synthetic targets in chemistry. Here, the authors employ a multi-component coordination strategy using a Pt(II) heteroligation to construct a cyclic bis[2]catenane metallacage, which could be reversibly transformed between the catenated structure and the bis-metallacage.

An S10-Symmetric 5-Fold Interlocked [2]Catenane

The reaction of sym-pentakis(4-aminothiophenyl)corannulene with 2-formyl-6-methylpyridine and Cu^I or 2-formyl-1,10-phenanthroline and M^II (M = Co, Zn) yields an S₁₀-symmetric 5-fold interlocked [2]catenane of two interpenetrating [Cu^I₅L₂]⁵⁺ cages or D₅-symmetric [M^II₅L₂]¹⁰⁺ cages, respectively. The new structures were characterized by X-ray crystallography, NMR spectroscopy, and mass spectrometry. Density functional theory computations point to dispersive energies on par with traditional covalent bond energies. Subcomponent exchange reactions favored formation of the [Co^II₅L₂]¹⁰⁺ cage over the [Cu^I₁₀L₄]¹⁰⁺ catenane. The single cage and catenane each cocrystallized with a corannulene guest to form a bowl-in-bowl substructure.

Host-Guest Recognition and Fluorescence of a Tetraphenylethene-Based Octacationic Cage

We report the synthesis and characterization of a three-dimensional tetraphenylethene-based octacationic cage that shows host-guest recognition of polycyclic aromatic hydrocarbons (e.g. coronene) in organic media and water-soluble dyes (e.g. sulforhodamine 101) in aqueous media through CH⋅⋅⋅π, π-π, and/or electrostatic interactions. The cage⊃coronene exhibits a cuboid internal cavity with a size of approximately 17.2×11.0×6.96 ų and a "hamburger"-type host-guest complex, which is hierarchically stacked into 1D nanotubes and a 3D supramolecular framework. The free cage possesses a similar cavity in the crystalline state. Furthermore, a host-guest complex formed between the octacationic cage and sulforhodamine 101 had a higher absolute quantum yield (Φ_F =28.5 %), larger excitation-emission gap (Δλ_ex-em =211 nm), and longer emission lifetime (τ=7.0 ns) as compared to the guest (Φ_F =10.5 %; Δλ_ex-em =11 nm; τ=4.9 ns), and purer emission (Δλ_FWHM =38 nm) as compared to the host (Δλ_FWHM =111 nm).

Augmented polyhydrazone formation in water by template-assisted polymerization using dual-purpose supramolecular templates

Template-assisted polymerization using donor–acceptor supramolecular templates results in higher M_w and M_n values, decreased critical hydrogelation concentrations, and increased gel recovery velocity following shear-induced breakdown.

Thinking outside the "Blue Box": from molecular to supramolecular pH-responsiveness

We present herein the development of a new polycationic cyclophane: the "red box", second in a series of hydrazone-based analogues of the well-known organic receptor cyclobis(paraquat-p-phenylene)cyclophane ("blue box"). The macrocycle has been prepared in an excellent yield in aqueous media, and shows both a remarkable pH-responsiveness and unusual hydrolytic stability of the two hydrazone C[double bond, length as m-dash]N bonds, associated with charge delocalization of the amine lone pair. Whilst in aqueous media the "red box" is able to complex a variety of aromatic substrates, both in its acidic and basic form, in organic media the cyclophane is only able to capture those in the acidic form, resulting in supramolecular pH-responsiveness.

Polymorphs of 2,4,6-tris(4-pyridyl)-1,3,5-triazine and their mechanical properties

The second polymorph of the compound 2,4,6-tris(4-pyridyl)-1,3,5-triazine (TPT) is reported, TPT-II, which crystallizes in space group I2/a. Its higher density and more efficient space filling indicate the lower entropy of TPT-II, while its slightly lower melting point indicates its weaker intermolecular interactions. The conditions of the crystallization experiments for TPT-I and TPT-II are the dominant factors that determine the final crystalline products. The crystals of TPT-II are long needles. They exhibit bending behaviour along the crystallographic b direction when a mechanical force is imposed perpendicular to it, and regain their original shape after the external stress is removed. The elasticity of the single crystals is interpreted in terms of intermolecular interactions and an energy framework analysis.

Dynamically Reversible Iron Oxide Nanoparticle Assemblies for Targeted Amplification of T1-Weighted Magnetic Resonance Imaging of Tumors

Smart magnetic resonance (MR) contrast agents, by which MR contrast can be selectively enhanced under acidic tumor microenvironment, are anticipated to significantly improve the diagnostic accuracy. Here, we report pH-sensitive iron oxide nanoparticle assemblies (IONAs) that are cross-linked by small-molecular aldehyde derivative ligands. The dynamic formation and cleavage of hydrazone linkages in neutral and acidic environments, respectively, allow the reversible response of the nanoassemblies to pH variations. At neutral pH, IONAs are structurally robust due to the cross-linking by the strong hydrazone bonds. In acidic tumor microenvironment, the hydrazone bonds are cleaved so that the IONAs are quickly disassembled into a large number of hydrophilic extremely small-sized iron oxide nanoparticles (ESIONs). As a result, significantly enhanced T1MR contrast is achieved, as confirmed by the measurement of r1 values at different pH conditions. Such acidity-targeting MR signal amplification by the pH-sensitive IONAs was further validated in vivo, demonstrating a novel T1 magnetic resonance imaging (MRI) strategy for highly sensitive imaging of acidic tumors.

Construction and interconversion of anion-coordination-based ('aniono') grids and double helicates modulated by counter-cations

‘Aniono’ double helicates and grids were constructed using PO₄^3– anions and a bis–tris(urea) ligand and interconverted by changing the counter-cation.

Supramolecular assembly of well-defined discrete architectures has been of great interest due to the tunable properties of these structures in functional materials and bio-mimicking. While metal-coordination-driven assembly has been extensively studied, anion-coordination-driven assembly (ACDA) is just emerging for constructing complex supramolecular structures. Herein two A_2nL_2n (A = anion, L = ligand; n = 1 or 2) ‘aniono’-supramolecular assemblies, i.e. double helicates and the first anion grid, have been constructed based on the coordination between phosphate (PO₄^3–) anion and a bis–tris(urea) ligand. Moreover, the aniono-grid and double helicate motifs can be readily interconverted under ambient conditions by simply changing the counter-cation. These results redefine the power and scope of ACDA, which may represent a new approach in the assembly of well-defined architectures in parallel with the metal coordination-driven assembly of metallo-supramolecules.

Organic Imine Cages: Molecular Marriage and Applications

Imine condensation has been known to chemists for more than a century and is used extensively to synthesize large organic cages of defined shapes and sizes. Surprisingly, in the context of the synthetic methods for organic imine cages (OICs), a self-sorting/self-selection (molecular marriage) process has been overlooked over the years. Such processes are omnipresent in nature, from the creation of galaxies to the formation of the smallest building blocks of life (the cell). Such processes have the incredible ability to guide a system toward the formation of a specific product or products out of a collection of equally probable multiple possibilities. This Minireview sheds light on new opportunities in cage design offered by the self-sorting/self-selection protocol in OICs. Recent efforts to explore organic cages for various exciting new applications are discussed; for example, for detection of harmful small organic molecules, as templates for nucleation of metal nanoparticles (MNPs), and as proton-conducting materials.

Solvent-Switched Schiff-Base Macrocycles: Self-Sorting and Self-Assembly-Dependent Unconventional Organic Particles

Organic reaction is a powerful and versatile tool for the creation of various new substrates and materials. However, there have been few reports of the direct fabrication of organic particles by organic reactions. Herein, we report that water as a co-solvent can efficiently switch a [2 + 2] macrocycle (3) to a [1 + 1] macrocycle (4) in a Schiff-base reaction from the same precursors at room temperature. Unexpectedly, a series of tunable organic micro/nanoparticles, including solid microspheres, core-shell spheres, and vesicles, could be directly precipitated in one-step from the reaction medium with high yield. X-ray structure analysis and other characterizations indicated that social self-sorting and narcissistic self-sorting of the macrocyclic frameworks of 3 and 4 through noncovalent interactions play crucial roles in the formation of such organic particles. Most interestingly, the facile and mild fabrication conditions of the particles allowed us to accurately and in situ monitor their intermediate formation by controlling the reaction time. This work thus provides an advancement of the fabrication of tunable organic particles.

Cation-based Structural Tuning of Pyridine Dipyrrolate Cages and Morphological Control over Their Self-assembly

Different pyridine dipyrrolate cages including cage-based dimers and polymers may be fabricated in a controlled manner from the same two starting materials, namely, an angular ligand 1 and Zn(acac)₂, by changing the counter cation source. With tetrabutylammonium (TBA⁺) and dimethyl viologen (DMV²⁺), Cage-3 and Cage-5 are produced. In these cages, two ligands act as bridges and serve to connect together two cage subunits to produce higher order ensembles. In Cage-3 and Cage-5, the TBA⁺ and DMV²⁺ counter cations lie outside the cavities of the respective cages. This stands in contrast to what is seen with a previously reported system, Cage-1, wherein dimethylammonium (DMA⁺) counter cations reside within the cage cavity. When the counter cations are tetraethylammonium (TEA⁺) and bis(cyclopentadienyl) cobalt(III) (Cp₂Co⁺), polymeric cage materials, PC-1 and PC-2, are formed, respectively. The counter cations thus serve not only to balance charge but also to tune the structural features as a whole. The organic cations used in the present study also act to modulate the further assembly of individual cages. The present cation-based tuning emerges as a new method for a fine-tuning of the multidimensional morphology of self-assembled inorganic materials.

Ultramacrocyclization via selective catenation in water

A set of two cyclic [2]catenane dimers were self-assembled in aqueous media via selective hydrazone condensation, by means of either one-pot or post-functionalization procedures.

Stabilization of an intramolecular hydrogen-bond block in an s-triazine insensitive high-energy material

A unique intramolecular hydrogen-bond block was stabilized in s-triazine insensitive high-energy materials with face-to-face stacking.

Controllable Self-Assembly of Pills and Cages via Imine Condensation for Silver Cation Detection

By condensing a trisamino linker with one of the two analogous bisaldehyde ligands, pills and tetrahedrons could be self-assembled. The self-assembled preference could be controlled by tuning the reaction conditions, including the size of side chain, concentration, and temperature. Coordination of silver cation quenches the fluorescence of the fluorene moieties on the pill, opening up opportunities for Ag⁺ cation detection.

Programmable Multicomponent Self-Assembly Based on Aromatic Amino Acids

Construction of integrated self-assembly with ordered structures from two or more organic building blocks is currently a challenge, since it suffers from intrinsic systematic complexity and diverse competitive pathways. Here, it is reported that aromatic amino acid building units can be incorporated into two- or three-component coassembly driven primarily by hydrogen bonding interactions without the assistance of metal-ligand and macrocycle-based host-guest interactions. The key strategy is to employ a C₃ -symmetric molecule with alternative hydrogen bonding donor/acceptor sites that are able to bind either carboxylic acid or pyridine appended building units. Aromatic amino acids, C₃ -symmetric compound, and bipyridine unit constitute a unique ternary mutual binding system, where three coassembly pathways including two pairwise formations and one ternary combination are unveiled, giving rise to two- and three-component self-assemblies with ordered structures, respectively. The pathway complexity lies in the structural parameter of aromatic amino acids, which can be programmable by controlling substituents at the α-position of amino acids.

Dynamic Covalent Self-Assembly Based on Oxime Condensation

Oxime, whose dynamic nature was reported to be switchable between ON/OFF by tuning the acidity, is employed in a novel type of dynamic covalent approach that is amenable to use in water for self-assembly of purely organic molecules with complex topology. In strongly acidic conditions, the dynamic nature of oxime is turned ON, allowing occurrence of error-checking and therefore a catenane and a macrocycle self-assembled in high yields. In neutral conditions, oxime ceases to be dynamic, which helps to trap the self-assembled products even when the driving forces of their formation are removed. We envision that this switchable behaviour might help, at least partially, to resolve a commonly encountered drawback of dynamic covalent chemistry, namely that the intrinsic stability of the self-assembled products containing dynamic bonds, such as imine or hydrazone, are often jeopardized by their reversible nature.