51
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Xu TY, Zhang SL, Dong GQ, Liu XZ, Wang X, Lv XQ, Qian QJ, Zhang RY, Sheng CQ, Miao CY. Discovery and characterization of novel small-molecule inhibitors targeting nicotinamide phosphoribosyltransferase. Sci Rep 2015; 5:10043. [PMID: 26040985 PMCID: PMC4603696 DOI: 10.1038/srep10043] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2014] [Accepted: 03/26/2015] [Indexed: 01/15/2023] Open
Abstract
Nicotinamide phosphoribosyltransferase (NAMPT) is a promising anticancer target. Using high throughput screening system targeting NAMPT, we obtained a potent NAMPT inhibitor MS0 (China Patent ZL201110447488.9) with excellent in vitro activity (IC50 = 9.87 ± 1.15nM) and anti-proliferative activity against multiple human cancer cell lines including stem-like cancer cells. Structure-activity relationship studies yielded several highly effective analogues. These inhibitors specifically bound NAMPT, rather than downstream NMNAT. We provided the first chemical case using cellular thermal shift assay to explain the difference between in vitro and cellular activity; MS7 showed best in vitro activity (IC50 = 0.93 ± 0.29 nM) but worst cellular activity due to poor target engagement in living cells. Site-directed mutagenesis studies identified important residues for NAMPT catalytic activity and inhibitor binding. The present findings contribute to deep understanding the action mode of NAMPT inhibitors and future development of NAMPT inhibitors as anticancer agents.
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Affiliation(s)
| | | | | | | | | | | | - Qi-Jun Qian
- Eastern Hepatobiliary Surgical Hospital &Institute, Second Military Medical University, Shanghai, China
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52
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Bielitza M, Belorgey D, Ehrhardt K, Johann L, Lanfranchi DA, Gallo V, Schwarzer E, Mohring F, Jortzik E, Williams DL, Becker K, Arese P, Elhabiri M, Davioud-Charvet E. Antimalarial NADPH-Consuming Redox-Cyclers As Superior Glucose-6-Phosphate Dehydrogenase Deficiency Copycats. Antioxid Redox Signal 2015; 22:1337-51. [PMID: 25714942 PMCID: PMC4410756 DOI: 10.1089/ars.2014.6047] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/10/2014] [Revised: 01/28/2015] [Accepted: 02/24/2015] [Indexed: 12/21/2022]
Abstract
AIMS Early phagocytosis of glucose-6-phosphate dehydrogenase (G6PD)-deficient erythrocytes parasitized by Plasmodium falciparum were shown to protect G6PD-deficient populations from severe malaria. Here, we investigated the mechanism of a novel antimalarial series, namely 3-[substituted-benzyl]-menadiones, to understand whether these NADPH-consuming redox-cyclers, which induce oxidative stress, mimic the natural protection of G6PD deficiency. RESULTS We demonstrated that the key benzoylmenadione metabolite of the lead compound acts as an efficient redox-cycler in NADPH-dependent methaemoglobin reduction, leading to the continuous formation of reactive oxygen species, ferrylhaemoglobin, and subsequent haemichrome precipitation. Structure-activity relationships evidenced that both drug metabolites and haemoglobin catabolites contribute to potentiate drug effects and inhibit parasite development. Disruption of redox homeostasis by the lead benzylmenadione was specifically induced in Plasmodium falciparum parasitized erythrocytes and not in non-infected cells, and was visualized via changes in the glutathione redox potential of living parasite cytosols. Furthermore, the redox-cycler shows additive and synergistic effects in combination with compounds affecting the NADPH flux in vivo. INNOVATION The lead benzylmenadione 1c is the first example of a novel redox-active agent that mimics the behavior of a falciparum parasite developing inside a G6PD-deficient red blood cell (RBC) giving rise to malaria protection, and it exerts specific additive effects that are inhibitory to parasite development, without harm for non-infected G6PD-sufficient or -deficient RBCs. CONCLUSION This strategy offers an innovative perspective for the development of future antimalarial drugs for G6PD-sufficient and -deficient populations.
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Affiliation(s)
- Max Bielitza
- UMR 7509 Centre National de la Recherche Scientifique and University of Strasbourg, European School of Chemistry, Polymers and Materials (ECPM), Strasbourg, France
| | - Didier Belorgey
- UMR 7509 Centre National de la Recherche Scientifique and University of Strasbourg, European School of Chemistry, Polymers and Materials (ECPM), Strasbourg, France
| | - Katharina Ehrhardt
- UMR 7509 Centre National de la Recherche Scientifique and University of Strasbourg, European School of Chemistry, Polymers and Materials (ECPM), Strasbourg, France
- Department of Infectiology, University of Heidelberg, Heidelberg, Germany
| | - Laure Johann
- UMR 7509 Centre National de la Recherche Scientifique and University of Strasbourg, European School of Chemistry, Polymers and Materials (ECPM), Strasbourg, France
| | - Don Antoine Lanfranchi
- UMR 7509 Centre National de la Recherche Scientifique and University of Strasbourg, European School of Chemistry, Polymers and Materials (ECPM), Strasbourg, France
| | - Valentina Gallo
- Department of Oncology, University of Torino Medical School, Torino, Italy
| | - Evelin Schwarzer
- Department of Oncology, University of Torino Medical School, Torino, Italy
| | - Franziska Mohring
- Biochemistry and Molecular Biology, Interdisciplinary Research Center (IFZ), Justus Liebig University of Giessen, Giessen, Germany
| | - Esther Jortzik
- Biochemistry and Molecular Biology, Interdisciplinary Research Center (IFZ), Justus Liebig University of Giessen, Giessen, Germany
| | - David L. Williams
- Department of Immunology/Microbiology, Rush University Medical Center, Chicago, Illinois
| | - Katja Becker
- Biochemistry and Molecular Biology, Interdisciplinary Research Center (IFZ), Justus Liebig University of Giessen, Giessen, Germany
| | - Paolo Arese
- Department of Oncology, University of Torino Medical School, Torino, Italy
| | - Mourad Elhabiri
- UMR 7509 Centre National de la Recherche Scientifique and University of Strasbourg, European School of Chemistry, Polymers and Materials (ECPM), Strasbourg, France
| | - Elisabeth Davioud-Charvet
- UMR 7509 Centre National de la Recherche Scientifique and University of Strasbourg, European School of Chemistry, Polymers and Materials (ECPM), Strasbourg, France
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53
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Nampt/PBEF/visfatin upregulation in colorectal tumors, mirrored in normal tissue and whole blood of colorectal cancer patients, is associated with metastasis, hypoxia, IL1β, and anemia. BIOMED RESEARCH INTERNATIONAL 2015; 2015:523930. [PMID: 26075243 PMCID: PMC4444566 DOI: 10.1155/2015/523930] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2015] [Revised: 04/20/2015] [Accepted: 04/23/2015] [Indexed: 12/30/2022]
Abstract
Targeting Nampt/PBEF/visfatin is considered a promising anticancer strategy, yet little is known about its association with colorectal cancer (CRC). We quantified Nampt/PBEF/visfatin expression in bowel and blood (mRNA and protein), referring it to CRC advancement and inflammatory, angiogenic, hypoxia, and proliferation indices. Tumor Nampt/PBEF/visfatin upregulation was associated with metastasis, anemia, tumor location, HIF1α, and inflammatory and angiogenic indices, of which HIF1α, IL1β, and anemia explained 70% in Nampt/PBEF/visfatin variability. Nampt/PBEF/visfatin expression in nontumor tissue, both mRNA and protein, increased in patients with metastatic disease and mild anemia, and, on transcriptional level, correlated with HIF1α, IL1β, IL8, CCL2, and CCL4 expression. Whole blood Nampt/PBEF/visfatin tended to be elevated in patients with metastatic cancer or anemia and correlated with inflammatory indices, of which IL1β, IL8, and hematocrit explained 60% of its variability. Circulating visfatin was associated with lymph node metastasis and inflammatory and angiogenic indices. In vitro experiments on SW620 cells demonstrated Nampt/PBEF/visfatin downregulation in response to serum withdrawal but its upregulation in response to serum induction and hypoxia. Stimulation with recombinant visfatin did not provide growth advantage. Summarizing, our results link Nampt/PBEF/visfatin with tumor metastatic potential and point at inflammation and hypoxia as key inducers of its upregulation in CRC.
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54
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Marletta AS, Massarotti A, Orsomando G, Magni G, Rizzi M, Garavaglia S. Crystal structure of human nicotinic acid phosphoribosyltransferase. FEBS Open Bio 2015; 5:419-28. [PMID: 26042198 PMCID: PMC4442680 DOI: 10.1016/j.fob.2015.05.002] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2015] [Revised: 04/30/2015] [Accepted: 05/01/2015] [Indexed: 01/04/2023] Open
Abstract
Human NaPRTase is a functional dimer. The structural bases for FK866 lack of inhibition of human NaPRTas were identified. Na, Nam and QA phosphoribosyltransferases share a conserved fold. Na, Nam and QA phosphoribosyltransferases show distinctive traits in the active site. Human and Enterococcus faecalis NaPRTase are highly structurally conserved.
Nicotinic acid phosphoribosyltransferase (EC 2.4.2.11) (NaPRTase) is the rate-limiting enzyme in the three-step Preiss–Handler pathway for the biosynthesis of NAD. The enzyme catalyzes the conversion of nicotinic acid (Na) and 5-phosphoribosyl-1-pyrophosphate (PRPP) to nicotinic acid mononucleotide (NaMN) and pyrophosphate (PPi). Several studies have underlined the importance of NaPRTase for NAD homeostasis in mammals, but no crystallographic data are available for this enzyme from higher eukaryotes. Here, we report the crystal structure of human NaPRTase that was solved by molecular replacement at a resolution of 2.9 Å in its ligand-free form. Our structural data allow the assignment of human NaPRTase to the type II phosphoribosyltransferase subfamily and reveal that the enzyme consists of two domains and functions as a dimer with the active site located at the interface of the monomers. The substrate-binding mode was analyzed by molecular docking simulation and provides hints into the catalytic mechanism. Moreover, structural comparison of human NaPRTase with the other two human type II phosphoribosyltransferases involved in NAD biosynthesis, quinolinate phosphoribosyltransferase and nicotinamide phosphoribosyltransferase, reveals that while the three enzymes share a conserved overall structure, a few distinctive structural traits can be identified. In particular, we show that NaPRTase lacks a tunnel that, in nicotinamide phosphoribosiltransferase, represents the binding site of its potent and selective inhibitor FK866, currently used in clinical trials as an antitumoral agent.
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Key Words
- FK866
- NAD biosynthesis
- NAD, nicotinamide adenine dinucleotide
- NMN, nicotinamide mononucleotide
- NMNAT, nicotinamide mononucleotide adenylyltransferase
- Na, nicotinic acid
- NaAD, nicotinic acid dinucleotide
- NaMN, nicotinic acid mononucleotide
- NaPRTase, nicotinic acid phosphoribosyltransferase
- NamR, nicotinamide riboside
- Nicotinic Acid
- PRPP, 5-phosphoribosyl-1-pyrophosphate
- Phosphoribosyltransferase
- Preiss–Handler pathway
- QA, quinolinic acid
- Recycling NAD pathway
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Affiliation(s)
- Ada Serena Marletta
- Department of Pharmaceutical Sciences, University of Piemonte Orientale, Largo Donegani 2, 28100 Novara, Italy
| | - Alberto Massarotti
- Department of Pharmaceutical Sciences, University of Piemonte Orientale, Largo Donegani 2, 28100 Novara, Italy
| | - Giuseppe Orsomando
- Department of Clinical Sciences, Section of Biochemistry, Polytechnic University of Marche, Via Ranieri 67, 60131 Ancona, Italy
| | - Giulio Magni
- Department of Clinical Sciences, Section of Biochemistry, Polytechnic University of Marche, Via Ranieri 67, 60131 Ancona, Italy
| | - Menico Rizzi
- Department of Pharmaceutical Sciences, University of Piemonte Orientale, Largo Donegani 2, 28100 Novara, Italy
| | - Silvia Garavaglia
- Department of Pharmaceutical Sciences, University of Piemonte Orientale, Largo Donegani 2, 28100 Novara, Italy
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55
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Chakrabarti G, Gerber DE, Boothman DA. Expanding antitumor therapeutic windows by targeting cancer-specific nicotinamide adenine dinucleotide phosphate-biogenesis pathways. Clin Pharmacol 2015; 7:57-68. [PMID: 25870517 PMCID: PMC4381889 DOI: 10.2147/cpaa.s79760] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Nicotinamide adenine dinucleotide phosphate (NADPH) biogenesis is an essential mechanism by which both normal and cancer cells maintain redox balance. While antitumor approaches to treat cancers through elevated reactive oxygen species (ROS) are not new ideas, depleting specific NADPH-biogenesis pathways that control recovery and repair pathways are novel, viable approaches to enhance cancer therapy. However, to elicit efficacious therapies exploiting NADPH-biogenic pathways, it is crucial to understand and specifically define the roles of NADPH-biogenesis pathways used by cancer cells for survival or recovery from cell stress. It is equally important to select NADPH-biogenic pathways that are expendable or not utilized in normal tissue to avoid unwanted toxicity. Here, we address recent literature that demonstrates specific tumor-selective NADPH-biogenesis pathways that can be exploited using agents that target specific cancer cell pathways normally not utilized in normal cells. Defining NADPH-biogenesis profiles of specific cancer-types should enable novel strategies to exploit these therapeutic windows for increased efficacy against recalcitrant neoplastic disease, such as pancreatic cancers. Accomplishing the goal of using ROS as a weapon against cancer cells will also require agents, such as NQO1 bioactivatable drugs, that selectively induce elevated ROS levels in cancer cells, while normal cells are protected.
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Affiliation(s)
- Gaurab Chakrabarti
- Department of Pharmacology, UT Southwestern Medical Center, Dallas, TX, USA ; Department of Radiation Oncology, UT Southwestern Medical Center, Dallas, TX, USA ; Harold C Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA
| | - David E Gerber
- Division of Hematology and Oncology, UT Southwestern Medical Center, Dallas, TX, USA ; Harold C Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA
| | - David A Boothman
- Department of Pharmacology, UT Southwestern Medical Center, Dallas, TX, USA ; Department of Radiation Oncology, UT Southwestern Medical Center, Dallas, TX, USA ; Harold C Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA
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56
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Zak M, Liederer BM, Sampath D, Yuen PW, Bair KW, Baumeister T, Buckmelter AJ, Clodfelter KH, Cheng E, Crocker L, Fu B, Han B, Li G, Ho YC, Lin J, Liu X, Ly J, O'Brien T, Reynolds DJ, Skelton N, Smith CC, Tay S, Wang W, Wang Z, Xiao Y, Zhang L, Zhao G, Zheng X, Dragovich PS. Identification of nicotinamide phosphoribosyltransferase (NAMPT) inhibitors with no evidence of CYP3A4 time-dependent inhibition and improved aqueous solubility. Bioorg Med Chem Lett 2014; 25:529-41. [PMID: 25556090 DOI: 10.1016/j.bmcl.2014.12.026] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2014] [Accepted: 12/09/2014] [Indexed: 10/24/2022]
Abstract
Herein we report the optimization efforts to ameliorate the potent CYP3A4 time-dependent inhibition (TDI) and low aqueous solubility exhibited by a previously identified lead compound from our NAMPT inhibitor program (1, GNE-617). Metabolite identification studies pinpointed the imidazopyridine moiety present in 1 as the likely source of the TDI signal, and replacement with other bicyclic systems was found to reduce or eliminate the TDI finding. A strategy of reducing the number of aromatic rings and/or lowering cLogD7.4 was then employed to significantly improve aqueous solubility. These efforts culminated in the discovery of 42, a compound with no evidence of TDI, improved aqueous solubility, and robust efficacy in tumor xenograft studies.
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Affiliation(s)
- Mark Zak
- Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA.
| | | | - Deepak Sampath
- Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA
| | - Po-Wai Yuen
- Pharmaron Beijing Co. Ltd, 6 Taihe Road, BDA, Beijing 100176, PR China
| | - Kenneth W Bair
- Forma Therapeutics Inc., 500 Arsenal Street, Watertown, MA 02472, USA
| | - Timm Baumeister
- Forma Therapeutics Inc., 500 Arsenal Street, Watertown, MA 02472, USA
| | | | - Karl H Clodfelter
- Forma Therapeutics Inc., 500 Arsenal Street, Watertown, MA 02472, USA
| | - Eric Cheng
- Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA
| | - Lisa Crocker
- Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA
| | - Bang Fu
- Pharmaron Beijing Co. Ltd, 6 Taihe Road, BDA, Beijing 100176, PR China
| | - Bingsong Han
- Forma Therapeutics Inc., 500 Arsenal Street, Watertown, MA 02472, USA
| | - Guangkun Li
- Pharmaron Beijing Co. Ltd, 6 Taihe Road, BDA, Beijing 100176, PR China
| | - Yen-Ching Ho
- Forma Therapeutics Inc., 500 Arsenal Street, Watertown, MA 02472, USA
| | - Jian Lin
- Forma Therapeutics Inc., 500 Arsenal Street, Watertown, MA 02472, USA
| | - Xiongcai Liu
- Pharmaron Beijing Co. Ltd, 6 Taihe Road, BDA, Beijing 100176, PR China
| | - Justin Ly
- Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA
| | - Thomas O'Brien
- Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA
| | | | | | - Chase C Smith
- Forma Therapeutics Inc., 500 Arsenal Street, Watertown, MA 02472, USA
| | - Suzanne Tay
- Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA
| | - Weiru Wang
- Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA
| | - Zhongguo Wang
- Forma Therapeutics Inc., 500 Arsenal Street, Watertown, MA 02472, USA
| | - Yang Xiao
- Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA
| | - Lei Zhang
- Pharmaron Beijing Co. Ltd, 6 Taihe Road, BDA, Beijing 100176, PR China
| | - Guiling Zhao
- Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA
| | - Xiaozhang Zheng
- Forma Therapeutics Inc., 500 Arsenal Street, Watertown, MA 02472, USA
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57
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Zabka TS, Singh J, Dhawan P, Liederer BM, Oeh J, Kauss MA, Xiao Y, Zak M, Lin T, McCray B, La N, Nguyen T, Beyer J, Farman C, Uppal H, Dragovich PS, O'Brien T, Sampath D, Misner DL. Retinal toxicity, in vivo and in vitro, associated with inhibition of nicotinamide phosphoribosyltransferase. Toxicol Sci 2014; 144:163-72. [PMID: 25505128 DOI: 10.1093/toxsci/kfu268] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Nicotinamide phosphoribosyltransferase (NAMPT) is a pleiotropic protein with intra- and extra-cellular functions as an enzyme, cytokine, growth factor, and hormone. NAMPT is of interest for oncology, because it catalyzes the rate-limiting step in the salvage pathway to generate nicotinamide adenine dinucleotide (NAD), which is considered a universal energy- and signal-carrying molecule involved in cellular energy metabolism and many homeostatic functions. This manuscript describes NAMPT inhibitor-induced retinal toxicity that was identified in rodent safety studies. This toxicity had a rapid onset and progression and initially targeted the photoreceptor and outer nuclear layers. Using in vivo safety and efficacy rodent studies, human and mouse cell line potency data, human and rat retinal pigmented epithelial cell in vitro systems, and rat mRNA expression data of NAMPT, nicotinic acid phosphoribosyltransferase, and nicotinamide mononucleotide adenylyltransferease (NMNAT) in several tissues from rat including retina, we demonstrate that the retinal toxicity is on-target and likely human relevant. We demonstrate that this toxicity is not mitigated by coadministration of nicotinic acid (NA), which can enable NAD production through the NAMPT-independent pathway. Further, modifying the physiochemical properties of NAMPT inhibitors could not sufficiently reduce retinal exposure. Our work highlights opportunities to leverage appropriately designed efficacy studies to identify known and measurable safety findings to screen compounds more rapidly and reduce animal use. It also demonstrates that in vitro systems with the appropriate cell composition and relevant biology and toxicity endpoints can provide tools to investigate mechanism of toxicity and the human translation of nonclinical safety concerns.
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Affiliation(s)
- Tanja S Zabka
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Jatinder Singh
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Preeti Dhawan
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Bianca M Liederer
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Jason Oeh
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Mara A Kauss
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Yang Xiao
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Mark Zak
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Tori Lin
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Bobbi McCray
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Nghi La
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Trung Nguyen
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Joseph Beyer
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Cynthia Farman
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Hirdesh Uppal
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Peter S Dragovich
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Thomas O'Brien
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Deepak Sampath
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
| | - Dinah L Misner
- *Safety Assessment, Genentech, South San Francisco, California 94080, DMPK, Genentech, South San Francisco, California 94080, In-Vivo Pharmacology, Genentech, South San Francisco, California 94080, Translational Oncology, Genentech, South San Francisco, California 94080, Discovery Chemistry, Genentech, South San Francisco, California 94080
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58
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Del Nagro C, Xiao Y, Rangell L, Reichelt M, O'Brien T. Depletion of the central metabolite NAD leads to oncosis-mediated cell death. J Biol Chem 2014; 289:35182-92. [PMID: 25355314 DOI: 10.1074/jbc.m114.580159] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
Depletion of the central metabolite NAD in cells results in broad metabolic defects leading to cell death and is a proposed novel therapeutic strategy in oncology. There is, however, a limited understanding of the underlying mechanisms that connect disruption of this central metabolite with cell death. Here we utilize GNE-617, a small molecule inhibitor of NAMPT, a rate-limiting enzyme required for NAD generation, to probe the pathways leading to cell death following NAD depletion. In all cell lines examined, NAD was rapidly depleted (average t½ of 8.1 h) following NAMPT inhibition. Concurrent with NAD depletion, there was a decrease in both cell proliferation and motility, which we attribute to reduced activity of NAD-dependent deacetylases because cells fail to deacetylate α-tubulin-K40 and histone H3-K9. Following depletion of NAD by >95%, cells lose the ability to regenerate ATP. Cell lines with a slower rate of ATP depletion (average t½ of 45 h) activate caspase-3 and show evidence of apoptosis and autophagy, whereas cell lines with rapid depletion ATP (average t½ of 32 h) do not activate caspase-3 or show signs of apoptosis or autophagy. However, the predominant form of cell death in all lines is oncosis, which is driven by the loss of plasma membrane homeostasis once ATP levels are depleted by >20-fold. Thus, our work illustrates the sequence of events that occurs in cells following depletion of a key metabolite and reveals that cell death caused by a loss of NAD is primarily driven by the inability of cells to regenerate ATP.
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Affiliation(s)
| | - Yang Xiao
- From the Departments of Translational Oncology and
| | - Linda Rangell
- Pathology, Genentech Inc., South San Francisco, California 94080
| | - Mike Reichelt
- Pathology, Genentech Inc., South San Francisco, California 94080
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59
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Soncini D, Caffa I, Zoppoli G, Cea M, Cagnetta A, Passalacqua M, Mastracci L, Boero S, Montecucco F, Sociali G, Lasigliè D, Damonte P, Grozio A, Mannino E, Poggi A, D'Agostino VG, Monacelli F, Provenzani A, Odetti P, Ballestrero A, Bruzzone S, Nencioni A. Nicotinamide phosphoribosyltransferase promotes epithelial-to-mesenchymal transition as a soluble factor independent of its enzymatic activity. J Biol Chem 2014; 289:34189-204. [PMID: 25331943 DOI: 10.1074/jbc.m114.594721] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Boosting NAD(+) biosynthesis with NAD(+) intermediates has been proposed as a strategy for preventing and treating age-associated diseases, including cancer. However, concerns in this area were raised by observations that nicotinamide phosphoribosyltransferase (NAMPT), a key enzyme in mammalian NAD(+) biosynthesis, is frequently up-regulated in human malignancies, including breast cancer, suggesting possible protumorigenic effects for this protein. We addressed this issue by studying NAMPT expression and function in human breast cancer in vivo and in vitro. Our data indicate that high NAMPT levels are associated with aggressive pathological and molecular features, such as estrogen receptor negativity as well as HER2-enriched and basal-like PAM50 phenotypes. Consistent with these findings, we found that NAMPT overexpression in mammary epithelial cells induced epithelial-to-mesenchymal transition, a morphological and functional switch that confers cancer cells an increased metastatic potential. However, importantly, NAMPT-induced epithelial-to-mesenchymal transition was found to be independent of NAMPT enzymatic activity and of the NAMPT product nicotinamide mononucleotide. Instead, it was mediated by secreted NAMPT through its ability to activate the TGFβ signaling pathway via increased TGFβ1 production. These findings have implications for the design of therapeutic strategies exploiting NAD(+) biosynthesis via NAMPT in aging and cancer and also suggest the potential of anticancer agents designed to specifically neutralize extracellular NAMPT. Notably, because high levels of circulating NAMPT are found in obese and diabetic patients, our data could also explain the increased predisposition to cancer of these subjects.
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Affiliation(s)
| | | | - Gabriele Zoppoli
- the Institut Jules Bordet, Université Libre de Bruxelles, 1000 Brussels, Belgium, the Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892
| | - Michele Cea
- From the Department of Internal Medicine, the Jerome Lipper Multiple Myeloma Center, Dana-Farber Cancer Institute, Harvard Medical School, Boston Novartis Institutes for BioMedical Research, Cambridge, Massachusetts 02139
| | - Antonia Cagnetta
- the Jerome Lipper Multiple Myeloma Center, Dana-Farber Cancer Institute, Harvard Medical School, Boston Novartis Institutes for BioMedical Research, Cambridge, Massachusetts 02139
| | - Mario Passalacqua
- Department of Experimental Medicine, Section of Biochemistry, and Italian Institute of Biostructures and Biosystems, University of Genoa, 16132 Genoa, Italy
| | - Luca Mastracci
- Department of Integrated Surgical and Diagnostic Sciences, Pathology Unit, University of Genoa, 16132 Genoa, Italy, the Istituto di Ricovero e Cura a Carattere Scientifico Azienda Ospedaliera Universitaria San Martino-Istituto Scientifico Tumori, Istituto Nazionale per la Ricerca sul Cancro, 16132 Genoa, Italy
| | - Silvia Boero
- the Istituto di Ricovero e Cura a Carattere Scientifico Azienda Ospedaliera Universitaria San Martino-Istituto Scientifico Tumori, Istituto Nazionale per la Ricerca sul Cancro, 16132 Genoa, Italy
| | - Fabrizio Montecucco
- From the Department of Internal Medicine, the Division of Cardiology, Foundation for Medical Researches, Department of Medical Specialties, University of Geneva, 1211 Geneva, Switzerland
| | - Giovanna Sociali
- Department of Experimental Medicine, Section of Biochemistry, and Center of Excellence for Biomedical Research, and
| | | | | | - Alessia Grozio
- Department of Experimental Medicine, Section of Biochemistry, and Center of Excellence for Biomedical Research, and
| | - Elena Mannino
- Department of Experimental Medicine, Section of Biochemistry, and Center of Excellence for Biomedical Research, and
| | - Alessandro Poggi
- the Istituto di Ricovero e Cura a Carattere Scientifico Azienda Ospedaliera Universitaria San Martino-Istituto Scientifico Tumori, Istituto Nazionale per la Ricerca sul Cancro, 16132 Genoa, Italy
| | - Vito G D'Agostino
- the Laboratory of Genomic Screening, Centre for Integrative Biology, University of Trento, 38123 Trento, Italy, and
| | | | - Alessandro Provenzani
- the Laboratory of Genomic Screening, Centre for Integrative Biology, University of Trento, 38123 Trento, Italy, and
| | - Patrizio Odetti
- From the Department of Internal Medicine, the Istituto di Ricovero e Cura a Carattere Scientifico Azienda Ospedaliera Universitaria San Martino-Istituto Scientifico Tumori, Istituto Nazionale per la Ricerca sul Cancro, 16132 Genoa, Italy
| | - Alberto Ballestrero
- From the Department of Internal Medicine, the Istituto di Ricovero e Cura a Carattere Scientifico Azienda Ospedaliera Universitaria San Martino-Istituto Scientifico Tumori, Istituto Nazionale per la Ricerca sul Cancro, 16132 Genoa, Italy
| | - Santina Bruzzone
- Department of Experimental Medicine, Section of Biochemistry, and Center of Excellence for Biomedical Research, and
| | - Alessio Nencioni
- From the Department of Internal Medicine, the Istituto di Ricovero e Cura a Carattere Scientifico Azienda Ospedaliera Universitaria San Martino-Istituto Scientifico Tumori, Istituto Nazionale per la Ricerca sul Cancro, 16132 Genoa, Italy,
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60
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Adams DJ, Ito D, Rees MG, Seashore-Ludlow B, Puyang X, Ramos AH, Cheah JH, Clemons PA, Warmuth M, Zhu P, Shamji AF, Schreiber SL. NAMPT is the cellular target of STF-31-like small-molecule probes. ACS Chem Biol 2014; 9:2247-54. [PMID: 25058389 PMCID: PMC4201331 DOI: 10.1021/cb500347p] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
![]()
The small-molecule probes STF-31
and its analogue compound 146 were discovered while searching for
compounds that kill VHL-deficient renal cell carcinoma cell lines
selectively and have been reported to act via direct inhibition of
the glucose transporter GLUT1. We profiled the sensitivity of 679
cancer cell lines to STF-31 and found that the pattern of response
is tightly correlated with sensitivity to three different inhibitors
of nicotinamide phosphoribosyltransferase (NAMPT). We also performed
whole-exome next-generation sequencing of compound 146-resistant HCT116
clones and identified a recurrent NAMPT-H191R mutation. Ectopic expression
of NAMPT-H191R conferred resistance to both STF-31 and compound 146
in cell lines. We further demonstrated that both STF-31 and compound
146 inhibit the enzymatic activity of NAMPT in a biochemical assay
in vitro. Together, our cancer-cell profiling and genomic approaches
identify NAMPT inhibition as a critical mechanism by which STF-31-like
compounds inhibit cancer cells.
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Affiliation(s)
| | - Daisuke Ito
- H3 Biomedicine, Inc., 300 Technology Square, Cambridge, Massachusetts 02139, United States
| | | | | | - Xiaoling Puyang
- H3 Biomedicine, Inc., 300 Technology Square, Cambridge, Massachusetts 02139, United States
| | - Alex H. Ramos
- H3 Biomedicine, Inc., 300 Technology Square, Cambridge, Massachusetts 02139, United States
| | | | | | - Markus Warmuth
- H3 Biomedicine, Inc., 300 Technology Square, Cambridge, Massachusetts 02139, United States
| | - Ping Zhu
- H3 Biomedicine, Inc., 300 Technology Square, Cambridge, Massachusetts 02139, United States
| | | | - Stuart L. Schreiber
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
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61
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NAMPT and NAPRT1: novel polymorphisms and distribution of variants between normal tissues and tumor samples. Sci Rep 2014; 4:6311. [PMID: 25201160 PMCID: PMC4158320 DOI: 10.1038/srep06311] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2014] [Accepted: 08/19/2014] [Indexed: 12/21/2022] Open
Abstract
Nicotinamide phosphoribosyltransferase (NAMPT) and nicotinate phosphoribosyltransferase domain containing 1 (NAPRT1) are the main human NAD salvage enzymes. NAD regulates energy metabolism and cell signaling, and the enzymes that control NAD availability are linked to pathologies such as cancer and neurodegeneration. Here, we have screened normal and tumor samples from different tissues and populations of origin for mutations in human NAMPT and NAPRT1, and evaluated their potential pathogenicity. We have identified several novel polymorphisms and showed that NAPRT1 has a greater genetic diversity than NAMPT, where any alteration can have a greater functional impact. Some variants presented different frequencies between normal and tumor samples that were most likely related to their population of origin. The novel mutations described that affect protein structure or expression levels can be functionally relevant and should be considered in a disease context. Particularly, mutations that decrease NAPRT1 expression can predict the usefulness of Nicotinic Acid in tumor treatments with NAMPT inhibitors.
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62
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Giannetti AM, Zheng X, Skelton NJ, Wang W, Bravo BJ, Bair KW, Baumeister T, Cheng E, Crocker L, Feng Y, Gunzner-Toste J, Ho YC, Hua R, Liederer BM, Liu Y, Ma X, O'Brien T, Oeh J, Sampath D, Shen Y, Wang C, Wang L, Wu H, Xiao Y, Yuen PW, Zak M, Zhao G, Zhao Q, Dragovich PS. Fragment-based identification of amides derived from trans-2-(pyridin-3-yl)cyclopropanecarboxylic acid as potent inhibitors of human nicotinamide phosphoribosyltransferase (NAMPT). J Med Chem 2014; 57:770-92. [PMID: 24405419 DOI: 10.1021/jm4015108] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Potent, trans-2-(pyridin-3-yl)cyclopropanecarboxamide-containing inhibitors of the human nicotinamide phosphoribosyltransferase (NAMPT) enzyme were identified using fragment-based screening and structure-based design techniques. Multiple crystal structures were obtained of initial fragment leads, and this structural information was utilized to improve the biochemical and cell-based potency of the associated molecules. Many of the optimized compounds exhibited nanomolar antiproliferative activities against human tumor lines in in vitro cell culture experiments. In a key example, a fragment lead (13, KD = 51 μM) was elaborated into a potent NAMPT inhibitor (39, NAMPT IC50 = 0.0051 μM, A2780 cell culture IC50 = 0.000 49 μM) which demonstrated encouraging in vivo efficacy in an HT-1080 mouse xenograft tumor model.
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Affiliation(s)
- Anthony M Giannetti
- Genentech, Inc. , 1 DNA Way, South San Francisco, California 94080, United States
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63
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Ginet V, Puyal J, Rummel C, Aubry D, Breton C, Cloux AJ, Majjigapu SR, Sordat B, Vogel P, Bruzzone S, Nencioni A, Duchosal MA, Nahimana A. A critical role of autophagy in antileukemia/lymphoma effects of APO866, an inhibitor of NAD biosynthesis. Autophagy 2014; 10:603-17. [PMID: 24487122 DOI: 10.4161/auto.27722] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
APO866, an inhibitor of NAD biosynthesis, exhibits potent antitumor properties in various malignancies. Recently, it has been shown that APO866 induces apoptosis and autophagy in human hematological cancer cells, but the role of autophagy in APO866-induced cell death remains unclear. Here, we report studies on the molecular mechanisms underlying APO866-induced cell death with emphasis on autophagy. Treatment of leukemia and lymphoma cells with APO866 induced both autophagy, as evidenced by an increase in autophagosome formation and in SQSTM1/p62 degradation, but also increased caspase activation as revealed by CASP3/caspase 3 cleavage. As an underlying mechanism, APO866-mediated autophagy was found to deplete CAT/catalase, a reactive oxygen species (ROS) scavenger, thus promoting ROS production and cell death. Inhibition of autophagy by ATG5 or ATG7 silencing prevented CAT degradation, ROS production, caspase activation, and APO866-induced cell death. Finally, supplementation with exogenous CAT also abolished APO866 cytotoxic activity. Altogether, our results indicated that autophagy is essential for APO866 cytotoxic activity on cells from hematological malignancies and also indicate an autophagy-dependent CAT degradation, a novel mechanism for APO866-mediated cell killing. Autophagy-modulating approaches could be a new way to enhance the antitumor activity of APO866 and related agents.
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Affiliation(s)
- Vanessa Ginet
- Department of Fundamental Neurosciences; Faculty of Biology and Medicine; University of Lausanne; Lausanne, Switzerland
| | - Julien Puyal
- Department of Fundamental Neurosciences; Faculty of Biology and Medicine; University of Lausanne; Lausanne, Switzerland
| | - Coralie Rummel
- Department of Fundamental Neurosciences; Faculty of Biology and Medicine; University of Lausanne; Lausanne, Switzerland
| | - Dominique Aubry
- Service and Central Laboratory of Hematology; University Hospital of Lausanne; Lausanne, Switzerland
| | - Caroline Breton
- Service and Central Laboratory of Hematology; University Hospital of Lausanne; Lausanne, Switzerland
| | - Anne-Julie Cloux
- Service and Central Laboratory of Hematology; University Hospital of Lausanne; Lausanne, Switzerland
| | - Somi R Majjigapu
- Laboratory of Glycochemistry and Asymmetric Synthesis; Swiss Federal Institute of Technology (EPFL); Batochime, Lausanne, Switzerland
| | - Bernard Sordat
- Laboratory of Glycochemistry and Asymmetric Synthesis; Swiss Federal Institute of Technology (EPFL); Batochime, Lausanne, Switzerland
| | - Pierre Vogel
- Laboratory of Glycochemistry and Asymmetric Synthesis; Swiss Federal Institute of Technology (EPFL); Batochime, Lausanne, Switzerland
| | - Santina Bruzzone
- Department of Experimental Medicine; Section of Biochemistry; University of Genoa; Genoa, Italy
| | - Alessio Nencioni
- Department of Internal Medicine; University of Genoa; Genoa, Italy
| | - Michel A Duchosal
- Service and Central Laboratory of Hematology; University Hospital of Lausanne; Lausanne, Switzerland
| | - Aimable Nahimana
- Service and Central Laboratory of Hematology; University Hospital of Lausanne; Lausanne, Switzerland
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64
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Zheng X, Baumeister T, Buckmelter AJ, Caligiuri M, Clodfelter KH, Han B, Ho YC, Kley N, Lin J, Reynolds DJ, Sharma G, Smith CC, Wang Z, Dragovich PS, Oh A, Wang W, Zak M, Wang Y, Yuen PW, Bair KW. Discovery of potent and efficacious cyanoguanidine-containing nicotinamide phosphoribosyltransferase (Nampt) inhibitors. Bioorg Med Chem Lett 2014; 24:337-43. [DOI: 10.1016/j.bmcl.2013.11.006] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2013] [Revised: 11/01/2013] [Accepted: 11/05/2013] [Indexed: 11/16/2022]
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65
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Song J, Ke SF, Zhou CC, Zhang SL, Guan YF, Xu TY, Sheng CQ, Wang P, Miao CY. Nicotinamide Phosphoribosyltransferase Is Required for the Calorie Restriction-Mediated Improvements in Oxidative Stress, Mitochondrial Biogenesis, and Metabolic Adaptation. J Gerontol A Biol Sci Med Sci 2013; 69:44-57. [DOI: 10.1093/gerona/glt122] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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66
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Zheng X, Bauer P, Baumeister T, Buckmelter AJ, Caligiuri M, Clodfelter KH, Han B, Ho YC, Kley N, Lin J, Reynolds DJ, Sharma G, Smith CC, Wang Z, Dragovich PS, Gunzner-Toste J, Liederer BM, Ly J, O'Brien T, Oh A, Wang L, Wang W, Xiao Y, Zak M, Zhao G, Yuen PW, Bair KW. Structure-based discovery of novel amide-containing nicotinamide phosphoribosyltransferase (nampt) inhibitors. J Med Chem 2013; 56:6413-33. [PMID: 23859118 DOI: 10.1021/jm4008664] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Crystal structures of several urea- and thiourea-derived compounds in complex with the nicotinamide phosphoribosyltransferase (Nampt) protein were utilized to design a potent amide-containing inhibitor bearing an aza-indole moiety (7, Nampt BC IC50 = 9.0 nM, A2780 cell proliferation IC50 = 10 nM). The Nampt-7 cocrystal structure was subsequently obtained and enabled the design of additional amide-containing inhibitors which incorporated various other fused 6,5-heterocyclic moieties and biaryl sulfone or sulfonamide motifs. Additional modifications of these molecules afforded many potent biaryl sulfone-containing Nampt inhibitors which also exhibited favorable in vitro ADME properties (microsomal and hepatocyte stability, MDCK permeability, plasma protein binding). An optimized compound (58) was a potent inhibitor of multiple cancer cell lines (IC50 <10 nM vs U251, HT1080, PC3, MiaPaCa2, and HCT116 lines), displayed acceptable mouse PK properties (F = 41%, CL = 52.4 mL/min/kg), and exhibited robust efficacy in a U251 mouse xenograft model.
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Affiliation(s)
- Xiaozhang Zheng
- Forma Therapeutics, Inc., 500 Arsenal Street, Watertown, Massachusetts 02472, United States.
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67
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Zheng X, Bauer P, Baumeister T, Buckmelter AJ, Caligiuri M, Clodfelter KH, Han B, Ho YC, Kley N, Lin J, Reynolds DJ, Sharma G, Smith CC, Wang Z, Dragovich PS, Oh A, Wang W, Zak M, Gunzner-Toste J, Zhao G, Yuen PW, Bair KW. Structure-based identification of ureas as novel nicotinamide phosphoribosyltransferase (Nampt) inhibitors. J Med Chem 2013; 56:4921-37. [PMID: 23617784 DOI: 10.1021/jm400186h] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Nicotinamide phosphoribosyltransferase (Nampt) is a promising anticancer target. Virtual screening identified a thiourea analogue, compound 5, as a novel highly potent Nampt inhibitor. Guided by the cocrystal structure of 5, SAR exploration revealed that the corresponding urea compound 7 exhibited similar potency with an improved solubility profile. These studies also indicated that a 3-pyridyl group was the preferred substituent at one inhibitor terminus and also identified a urea moiety as the optimal linker to the remainder of the inhibitor structure. Further SAR optimization of the other inhibitor terminus ultimately yielded compound 50 as a urea-containing Nampt inhibitor which exhibited excellent biochemical and cellular potency (enzyme IC50 = 0.007 μM; A2780 IC50 = 0.032 μM). Compound 50 also showed excellent in vivo antitumor efficacy when dosed orally in an A2780 ovarian tumor xenograft model (TGI of 97% was observed on day 17).
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Affiliation(s)
- Xiaozhang Zheng
- Forma Therapeutics, Inc., 500 Arsenal Street, Watertown, Massachusetts 02472, USA.
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68
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van Horssen R, Willemse M, Haeger A, Attanasio F, Güneri T, Schwab A, Stock CM, Buccione R, Fransen JAM, Wieringa B. Intracellular NAD(H) levels control motility and invasion of glioma cells. Cell Mol Life Sci 2013; 70:2175-90. [PMID: 23307072 PMCID: PMC11113314 DOI: 10.1007/s00018-012-1249-1] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2012] [Revised: 11/29/2012] [Accepted: 12/17/2012] [Indexed: 12/15/2022]
Abstract
Oncogenic transformation involves reprogramming of cell metabolism, whereby steady-state levels of intracellular NAD(+) and NADH can undergo dramatic changes while ATP concentration is generally well maintained. Altered expression of nicotinamide phosphoribosyltransferase (NAMPT), the rate-limiting enzyme of NAD(+)-salvage, accompanies the changes in NAD(H) during tumorigenesis. Here, we show by genetic and pharmacological inhibition of NAMPT in glioma cells that fluctuation in intracellular [NAD(H)] differentially affects cell growth and morphodynamics, with motility/invasion capacity showing the highest sensitivity to [NAD(H)] decrease. Extracellular supplementation of NAD(+) or re-expression of NAMPT abolished the effects. The effects of NAD(H) decrease on cell motility appeared parallel coupled with diminished pyruvate-lactate conversion by lactate dehydrogenase (LDH) and with changes in intracellular and extracellular pH. The addition of lactic acid rescued and knockdown of LDH-A replicated the effects of [NAD(H)] on motility. Combined, our observations demonstrate that [NAD(H)] is an important metabolic component of cancer cell motility. Nutrient or drug-mediated modulation of NAD(H) levels may therefore represent a new option for blocking the invasive behavior of tumors.
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Affiliation(s)
- Remco van Horssen
- Department of Cell Biology, Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical Centre, PO Box 9101, 6500 HB, Nijmegen, The Netherlands.
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69
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Subamolide a induces mitotic catastrophe accompanied by apoptosis in human lung cancer cells. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE 2013; 2013:828143. [PMID: 23533526 PMCID: PMC3595678 DOI: 10.1155/2013/828143] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/12/2012] [Revised: 12/28/2012] [Accepted: 01/23/2013] [Indexed: 12/21/2022]
Abstract
This study investigated the anticancer effects of subamolide A (Sub-A), isolated from Cinnamomum subavenium, on human nonsmall cell lung cancer cell lines A549 and NCI-H460. Treatment of cancer cells with Sub-A resulted in decreased cell viability of both lung cancer cell lines. Sub-A induced lung cancer cell death by triggering mitotic catastrophe with apoptosis. It triggered oxidant stress, indicated by increased cellular reactive oxygen species (ROS) production and decreased glutathione level. The elevated ROS triggered the activation of ataxia-telangiectasia mutation (ATM), which further enhanced the ATF3 upregulation and subsequently enhanced p53 function by phosphorylation at Serine 15 and Serine 392. The antioxidant, EUK8, significantly decreased mitotic catastrophe by inhibiting ATM activation, ATF3 expression, and p53 phosphorylation. The reduction of ATM and ATF3 expression by shRNA decreased Sub-A-mediated p53 phosphorylation and mitotic catastrophe. Sub-A also caused a dramatic 70% reduction in tumor size in an animal model. Taken together, cell death of lung cancer cells in response to Sub-A is dependent on ROS generation, which triggers mitotic catastrophe followed by apoptosis. Therefore, Sub-A may be a novel anticancer agent for the treatment of nonsmall cell lung cancer.
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70
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Sun X, Ai M, Wang Y, Shen S, Gu Y, Jin Y, Zhou Z, Long Y, Yu Q. Selective induction of tumor cell apoptosis by a novel P450-mediated reactive oxygen species (ROS) inducer methyl 3-(4-nitrophenyl) propiolate. J Biol Chem 2013; 288:8826-37. [PMID: 23382387 DOI: 10.1074/jbc.m112.429316] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
Induction of tumor cell apoptosis has been recognized as a valid anticancer strategy. However, therapeutic selectivity between tumor and normal cells has always been a challenge. Here, we report a novel anti-cancer compound methyl 3-(4-nitrophenyl) propiolate (NPP) preferentially induces apoptosis in tumor cells through P450-catalyzed reactive oxygen species (ROS) production. A compound sensitivity study on multiple cell lines shows that tumor cells with high basal ROS levels, low antioxidant capacities, and p53 mutations are especially sensitive to NPP. Knockdown of p53 sensitized non-transformed cells to NPP-induced cell death. Additionally, by comparing NPP with other ROS inducers, we show that the susceptibility of tumor cells to the ROS-induced cell death is influenced by the mode, amount, duration, and perhaps location of ROS production. Our studies not only discovered a unique anticancer drug candidate but also shed new light on the understanding of ROS generation and function and the potential application of a ROS-promoting strategy in cancer treatment.
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Affiliation(s)
- Xiaoxiao Sun
- Departments of Pharmacology, Chinese Academy of Sciences, 555 Zhchongzhi Road, Shanghai, China 201203
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