Combining and benchmarking methods of foetal ECG extraction without maternal or scalp electrode data

A PCA/ICA based Fetal ECG Extraction from Mother Abdominal Recordings by Means of a Novel Data-driven Approach to Fetal ECG Quality Assessment

BACKGROUND

Fetal electrocardiography is a developing field that provides valuable information on the fetal health during pregnancy. By early diagnosis and treatment of fetal heart problems, more survival chance is given to the infant.

OBJECTIVE

MATERIALS AND METHODS

Here, we extract fetal ECG from maternal abdominal recordings and detect R-peaks in order to recognize fetal heart rate. On the next step, we find a better and more qualified extracted fetal ECG by using a novel approach.

RESULTS

In this paper, a PCA/ICA-based algorithm is proposed for extracting fetal ECG, and fetal R-peaks are detected as well. The method validates the quality of extracted ECGs and selects the best candidate fetal ECG to provide the required morphological ECG features such as fetal heart rate and RR interval for more clinical examinations. The method was evaluated using the dataset which was provided by PhysioNet/Computing in Cardiology Challenge 2013. The dataset consists of 75 recordings of 4-channel ECGs each containing 1-minute length for training and 100 similar recordings for testing.

CONCLUSION

When the proposed algorithm was applied to the test set, the scores of 85.853 bpm2 for fetal heart rate and an error of 9.725 ms RMS for fetal RR-interval estimation were obtained.

A Novel Technique for Fetal ECG Extraction Using Single-Channel Abdominal Recording

Non-invasive fetal electrocardiograms (FECGs) are an alternative method to standard means of fetal monitoring which permit long-term continual monitoring. However, in abdominal recording, the FECG amplitude is weak in the temporal domain and overlaps with the maternal electrocardiogram (MECG) in the spectral domain. Research in the area of non-invasive separations of FECG from abdominal electrocardiograms (AECGs) is in its infancy and several studies are currently focusing on this area. An adaptive noise canceller (ANC) is commonly used for cancelling interference in cases where the reference signal only correlates with an interference signal, and not with a signal of interest. However, results from some existing studies suggest that propagation of electrocardiogram (ECG) signals from the maternal heart to the abdomen is nonlinear, hence the adaptive filter approach may fail if the thoracic and abdominal MECG lack strict waveform similarity. In this study, singular value decomposition (SVD) and smooth window (SW) techniques are combined to build a reference signal in an ANC. This is to avoid the limitation that thoracic MECGs recorded separately must be similar to abdominal MECGs in waveform. Validation of the proposed method with r01 and r07 signals from a public dataset, and a self-recorded private dataset showed that the proposed method achieved F1 scores of 99.61%, 99.28% and 98.58%, respectively for the detection of fetal QRS. Compared with four other single-channel methods, the proposed method also achieved higher accuracy values of 99.22%, 98.57% and 97.21%, respectively. The findings from this study suggest that the proposed method could potentially aid accurate extraction of FECG from MECG recordings in both clinical and commercial applications.

Extraction of fetal ECG signal by an improved method using extended Kalman smoother framework from single channel abdominal ECG signal

This paper proposes a five-stage based methodology to extract the fetal electrocardiogram (FECG) from the single channel abdominal ECG using differential evolution (DE) algorithm, extended Kalman smoother (EKS) and adaptive neuro fuzzy inference system (ANFIS) framework. The heart rate of the fetus can easily be detected after estimation of the fetal ECG signal. The abdominal ECG signal contains fetal ECG signal, maternal ECG component, and noise. To estimate the fetal ECG signal from the abdominal ECG signal, removal of the noise and the maternal ECG component presented in it is necessary. The pre-processing stage is used to remove the noise from the abdominal ECG signal. The EKS framework is used to estimate the maternal ECG signal from the abdominal ECG signal. The optimized parameters of the maternal ECG components are required to develop the state and measurement equation of the EKS framework. These optimized maternal ECG parameters are selected by the differential evolution algorithm. The relationship between the maternal ECG signal and the available maternal ECG component in the abdominal ECG signal is nonlinear. To estimate the actual maternal ECG component present in the abdominal ECG signal and also to recognize this nonlinear relationship the ANFIS is used. Inputs to the ANFIS framework are the output of EKS and the pre-processed abdominal ECG signal. The fetal ECG signal is computed by subtracting the output of ANFIS from the pre-processed abdominal ECG signal. Non-invasive fetal ECG database and set A of 2013 physionet/computing in cardiology challenge database (PCDB) are used for validation of the proposed methodology. The proposed methodology shows a sensitivity of 94.21%, accuracy of 90.66%, and positive predictive value of 96.05% from the non-invasive fetal ECG database. The proposed methodology also shows a sensitivity of 91.47%, accuracy of 84.89%, and positive predictive value of 92.18% from the set A of PCDB.

Energy and Quality Evaluation for Compressive Sensing of Fetal Electrocardiogram Signals

This manuscript addresses the problem of non-invasive fetal Electrocardiogram (ECG) signal acquisition with low power/low complexity sensors. A sensor architecture using the Compressive Sensing (CS) paradigm is compared to a standard compression scheme using wavelets in terms of energy consumption vs. reconstruction quality, and, more importantly, vs. performance of fetal heart beat detection in the reconstructed signals. We show in this paper that a CS scheme based on reconstruction with an over-complete dictionary has similar reconstruction quality to one based on wavelet compression. We also consider, as a more important figure of merit, the accuracy of fetal beat detection after reconstruction as a function of the sensor power consumption. Experimental results with an actual implementation in a commercial device show that CS allows significant reduction of energy consumption in the sensor node, and that the detection performance is comparable to that obtained from original signals for compression ratios up to about 75%.

Evaluation of the fetal QT interval using non-invasive fetal ECG technology

Non-invasive fetal electrocardiography (NI-FECG) is a promising alternative continuous fetal monitoring method that has the potential to allow morphological analysis of the FECG. However, there are a number of challenges associated with the evaluation of morphological parameters from the NI-FECG, including low signal to noise ratio of the NI-FECG and methodological challenges for getting reference annotations and evaluating the accuracy of segmentation algorithms. This work aims to validate the measurement of the fetal QT interval in term laboring women using a NI-FECG electrocardiogram monitor. Fetal electrocardiogram data were recorded from 22 laboring women at term using the NI-FECG and an invasive fetal scalp electrode simultaneously. A total of 105 one-minute epochs were selected for analysis. Three pediatric electrophysiologists independently annotated individual waveforms and averaged waveforms from each epoch. The intervals measured on the averaged cycles taken from the NI-FECG and the fetal scalp electrode showed a close agreement; the root mean square error between all corresponding averaged NI-FECG and fetal scalp electrode beats was 13.6 ms, which is lower than the lowest adult root mean square error of 16.1 ms observed in related adult QT studies. These results provide evidence that NI-FECG technology enables accurate extraction of the fetal QT interval.

False alarm reduction in critical care

High false alarm rates in the ICU decrease quality of care by slowing staff response times while increasing patient delirium through noise pollution. The 2015 PhysioNet/Computing in Cardiology Challenge provides a set of 1250 multi-parameter ICU data segments associated with critical arrhythmia alarms, and challenges the general research community to address the issue of false alarm suppression using all available signals. Each data segment was 5 minutes long (for real time analysis), ending at the time of the alarm. For retrospective analysis, we provided a further 30 seconds of data after the alarm was triggered. A total of 750 data segments were made available for training and 500 were held back for testing. Each alarm was reviewed by expert annotators, at least two of whom agreed that the alarm was either true or false. Challenge participants were invited to submit a complete, working algorithm to distinguish true from false alarms, and received a score based on their program's performance on the hidden test set. This score was based on the percentage of alarms correct, but with a penalty that weights the suppression of true alarms five times more heavily than acceptance of false alarms. We provided three example entries based on well-known, open source signal processing algorithms, to serve as a basis for comparison and as a starting point for participants to develop their own code. A total of 38 teams submitted a total of 215 entries in this year's Challenge. This editorial reviews the background issues for this challenge, the design of the challenge itself, the key achievements, and the follow-up research generated as a result of the Challenge, published in the concurrent special issue of Physiological Measurement. Additionally we make some recommendations for future changes in the field of patient monitoring as a result of the Challenge.

Sequential Total Variation Denoising for the Extraction of Fetal ECG from Single-Channel Maternal Abdominal ECG

Fetal heart rate (FHR) is an important determinant of fetal health. Cardiotocography (CTG) is widely used for measuring the FHR in the clinical field. However, fetal movement and blood flow through the maternal blood vessels can critically influence Doppler ultrasound signals. Moreover, CTG is not suitable for long-term monitoring. Therefore, researchers have been developing algorithms to estimate the FHR using electrocardiograms (ECGs) from the abdomen of pregnant women. However, separating the weak fetal ECG signal from the abdominal ECG signal is a challenging problem. In this paper, we propose a method for estimating the FHR using sequential total variation denoising and compare its performance with that of other single-channel fetal ECG extraction methods via simulation using the Fetal ECG Synthetic Database (FECGSYNDB). Moreover, we used real data from PhysioNet fetal ECG databases for the evaluation of the algorithm performance. The R-peak detection rate is calculated to evaluate the performance of our algorithm. Our approach could not only separate the fetal ECG signals from the abdominal ECG signals but also accurately estimate the FHR.

A new method for QRS complex detection in multichannel ECG: Application to self-monitoring of fetal health

This paper proposes a new approach for QRS complex detection in multichannel ECG and presents its application to fetal QRS (fQRS) detection in signals acquired from maternal abdominal leads. The method exploits the characteristics of pseudo-periodicity and time shape of QRS, it consists of devising a quality index (QI) which synthesizes these characteristics and of finding the linear combination of the acquired ECGs, which maximizes this QI. In the application for fQRS detection two QIs are devised, one QI (mQI) for maternal ECG (mECG) and one QI (fQI) for fetal ECG (fECG). The method is completely unsupervised and based on the following steps: signal pre-processing; maternal QRS-enhanced signal extraction by finding the linear combination that maximize the mQI; detection of maternal QRSs; mECG component approximation and canceling by weighted Singular Value Decomposition (SVD); fQRS-enhanced signal extraction by finding the linear combination that maximize the fQI and fQRS detection. The proposed method was compared with our previously developed Independent Component Analysis (ICA) based method as well as with simple mECG canceling and simple ICA methods. The comparison was carried out by evaluating the performances of the procedures in fQRS detection. The new method outperformed the results of the other approaches on the annotated open set of the Computing in Cardiology Challenge 2013 database. The proposed method seems to be promising for its implementation on portable device and for use in self-monitoring of fetal health in pregnant women.

Fusion of detected multi-channel maternal electrocardiogram (ECG) R-wave peak locations

Background

Almost all promising non-invasive foetal ECG extraction methods involve accurately determining maternal ECG R-wave peaks. However, it is not easy to robustly detect accurate R-wave peaks of the maternal ECG component in an acquired abdominal ECG since it often has a low signal-to-noise ratio (SNR), sometimes containing a large foetal ECG component or other noises and interferences. This paper discusses, under the condition of acquiring multi-channel abdominal ECG signals, how to improve the robustness of maternal ECG R-wave peak detection.

Methods

On the basis of summarising the current single channel ECG R-wave peak detection methods, the paper proposed a specific fusion algorithm of detected multi-channel maternal ECG R-wave peak locations. The proposed entire algorithm was then tested using two databases; one database, created by us, was composed of 343 groups of 8-channel data collected from 78 pregnant women, and the other one, called the challenge database, was from the Physionet/Computing in Cardiology Challenge 2013, including 175 groups of 4-channel data. When using these databases, each group of data was classified into two parts, called the training part and the validation test part respectively; the training part was the first 8.192 s of each group of data and the validation test part was the next 8.192 s.

Results

To show the results, three evaluation parameters—sensitivity (Se), positive predictive value (PPV) and F1—are used. The validation test results for the database we collected are Se = 99.93 %, PPV = 99.98 %, and F1 = 99.95 %, while the results for the challenge database are Se = 99.91 %, PPV = 99.86 %, and F1 = 99.88 %.

Conclusion

The results of the test show that the robustness of our proposed whole fusion algorithm was superior to that of other outstanding algorithms for maternal R-wave detection, and is much better than that of single channel maternal R-wave detection algorithms.

Separation and Analysis of Fetal-ECG Signals From Compressed Sensed Abdominal ECG Recordings

OBJECTIVE

Analysis of fetal electrocardiogram (f-ECG) waveforms as well as fetal heart-rate (fHR) evaluation provide important information about the condition of the fetus during pregnancy. A continuous monitoring of f-ECG, for example using the technologies already applied for adults ECG tele-monitor-ing (e.g., Wireless Body Sensor Networks (WBSNs)), may increase early detection of fetal arrhythmias. In this study, we propose a novel framework, based on compressive sensing (CS) theory, for the compression and joint detection/classification of mother and fetal heart beats.

METHODS

Our scheme is based on the sparse representation of the components derived from independent component analysis (ICA), which we propose to apply directly in the compressed domain. Detection and classification is based on the activated atoms in a specifically designed reconstruction dictionary.

RESULTS

Validation of the proposed compression and detection framework has been done on two publicly available datasets, showing promising results (sensitivity S = 92.5 %, P += 92 % , F1 = 92.2 % for the Silesia dataset and S = 78 % , P += 77 %, F1 = 77.5 % for the Challenge dataset A, with average reconstruction quality PRD = 8.5 % and PRD = 7.5 %, respectively).

CONCLUSION

The experiments confirm that the proposed framework may be used for compression of abdominal f-ECG and to obtain real-time information of the fHR, providing a suitable solution for real time, very low-power f-ECG monitoring.

SIGNIFICANCE

To the authors' knowledge, this is the first time that a framework for the low-power CS compression of fetal abdominal ECG is proposed combined with a beat detector for an fHR estimation.

Logistic Regression-HSMM-Based Heart Sound Segmentation

The identification of the exact positions of the first and second heart sounds within a phonocardiogram (PCG), or heart sound segmentation, is an essential step in the automatic analysis of heart sound recordings, allowing for the classification of pathological events. While threshold-based segmentation methods have shown modest success, probabilistic models, such as hidden Markov models, have recently been shown to surpass the capabilities of previous methods. Segmentation performance is further improved when a priori information about the expected duration of the states is incorporated into the model, such as in a hidden semi-Markov model (HSMM). This paper addresses the problem of the accurate segmentation of the first and second heart sound within noisy real-world PCG recordings using an HSMM, extended with the use of logistic regression for emission probability estimation. In addition, we implement a modified Viterbi algorithm for decoding the most likely sequence of states, and evaluated this method on a large dataset of 10,172 s of PCG recorded from 112 patients (including 12,181 first and 11,627 second heart sounds). The proposed method achieved an average F1 score of 95.63 ± 0.85%, while the current state of the art achieved 86.28 ± 1.55% when evaluated on unseen test recordings. The greater discrimination between states afforded using logistic regression as opposed to the previous Gaussian distribution-based emission probability estimation as well as the use of an extended Viterbi algorithm allows this method to significantly outperform the current state-of-the-art method based on a two-sided paired t-test.

The PhysioNet/Computing in Cardiology Challenge 2015: Reducing False Arrhythmia Alarms in the ICU

High false alarm rates in the ICU decrease quality of care by slowing staff response times while increasing patient delirium through noise pollution. The 2015 Physio-Net/Computing in Cardiology Challenge provides a set of 1,250 multi-parameter ICU data segments associated with critical arrhythmia alarms, and challenges the general research community to address the issue of false alarm suppression using all available signals. Each data segment was 5 minutes long (for real time analysis), ending at the time of the alarm. For retrospective analysis, we provided a further 30 seconds of data after the alarm was triggered. A collection of 750 data segments was made available for training and a set of 500 was held back for testing. Each alarm was reviewed by expert annotators, at least two of whom agreed that the alarm was either true or false. Challenge participants were invited to submit a complete, working algorithm to distinguish true from false alarms, and received a score based on their program's performance on the hidden test set. This score was based on the percentage of alarms correct, but with a penalty that weights the suppression of true alarms five times more heavily than acceptance of false alarms. We provided three example entries based on well-known, open source signal processing algorithms, to serve as a basis for comparison and as a starting point for participants to develop their own code. A total of 38 teams submitted a total of 215 entries in this year's Challenge.

Robust detection of heart beats in multimodal data

This editorial reviews the background issues, the design, the key achievements, and the follow-up research generated as a result of the PhysioNet/Computing in Cardiology (CinC) Challenge 2014, published in the concurrent focus issue of Physiological Measurement. Our major focus was to accelerate the development and facilitate the comparison of robust methods for locating heart beats in long-term multi-channel recordings. A public (training) database consisting of 151 032 annotated beats was compiled from records that contained ECGs as well as pulsatile signals that directly reflect cardiac activity, and other signals that may have few or no observable markers of heart beats. A separate hidden test data set (consisting of 152 478 beats) is permanently stored at PhysioNet, and a public framework has been developed to provide researchers with the ability to continue to automatically score and compare the performance of their algorithms. A scoring criteria based on the averaging of gross sensitivity, gross positive predictivity, average sensitivity, and average positive predictivity is proposed. The top three scores (as of March 2015) on the hidden test data set were 93.64%, 91.50%, and 90.70%.

Multimodal heart beat detection using signal quality indices

The electrocardiogram (ECG) is a well studied signal from which many clinically relevant parameters can be derived, such as heart rate. A key component in the estimation of these parameters is the accurate detection of the R peak in the QRS complex. While corruption of the ECG by movement artefact or sensor failure can result in poor delineation of the R peak, use of synchronously measured signals could allow for resolution of the R peak even scenarios with poor quality ECG recordings. Robust estimation of R peak locations from multimodal signals facilitates real time monitoring and is likely to reduce false alarms due to inaccurate derived parameters.We propose a method which fuses R peaks detected on the ECG using an energy detector with those detected on the arterial blood pressure (ABP) waveform using the length transform. A signal quality index (SQI) for the two signals is then derived. The ECG SQI is based upon the agreement between two distinct peak detectors. The ABP SQI estimates the blood pressure at various phases in the cardiac cycle and only accepts the signal as good quality if the values are physiologically plausible. Detections from these two signals were merged by selecting the R peak detections from the signal with a higher SQI. The approach presented in this paper was evaluated on datasets provided for the Physionet/Computing in Cardiology Challenge 2014. The algorithm achieved a sensitivity of 95.1% and positive predictive value of 89.3% on an external evaluation set, and achieved a score of 91.5%.The method here demonstrated excellent performance across a variety of signal morphologies collected during clinical practice. Fusion of R peaks from other signals has the potential to provide informed estimates of the R peak location in situations where the ECG is noisy or completely absent. Source code for the algorithm is made available freely online.

Heart beat detection in multimodal physiological data using a hidden semi-Markov model and signal quality indices

Accurate heart beat detection in signals acquired from intensive care unit (ICU) patients is necessary for establishing both normality and detecting abnormal events. Detection is normally performed by analysing the electrocardiogram (ECG) signal, and alarms are triggered when parameters derived from this signal exceed preset or variable thresholds. However, due to noisy and missing data, these alarms are frequently deemed to be false positives, and therefore ignored by clinical staff. The fusion of features derived from other signals, such as the arterial blood pressure (ABP) or the photoplethysmogram (PPG), has the potential to reduce such false alarms. In order to leverage the highly correlated temporal nature of the physiological signals, a hidden semi-Markov model (HSMM) approach, which uses the intra- and inter-beat depolarization interval, was designed to detect heart beats in such data. Features based on the wavelet transform, signal gradient and signal quality indices were extracted from the ECG and ABP waveforms for use in the HSMM framework. The presented method achieved an overall score of 89.13% on the hidden/test data set provided by the Physionet/Computing in Cardiology Challenge 2014: Robust Detection of Heart Beats in Multimodal Data.

Non-invasive fetal ECG analysis

Despite the important advances achieved in the field of adult electrocardiography signal processing, the analysis of the non-invasive fetal electrocardiogram (NI-FECG) remains a challenge. Currently no gold standard database exists which provides labelled FECG QRS complexes (and other morphological parameters), and publications rely either on proprietary databases or a very limited set of data recorded from few (or more often, just one) individuals.The PhysioNet/Computing in Cardiology Challenge 2013 enables to tackle some of these limitations by releasing a set of NI-FECG data publicly to the scientific community in order to evaluate signal processing techniques for NI-FECG extraction. The Challenge aim was to encourage development of accurate algorithms for locating QRS complexes and estimating the QT interval in non-invasive FECG signals. Using carefully reviewed reference QRS annotations and QT intervals as a gold standard, based on simultaneous direct FECG when possible, the Challenge was designed to measure and compare the performance of participants' algorithms objectively. Multiple challenge events were designed to test basic FHR estimation accuracy, as well as accuracy in measurement of inter-beat (RR) and QT intervals needed as a basis for derivation of other FECG features.This editorial reviews the background issues, the design of the Challenge, the key achievements, and the follow-up research generated as a result of the Challenge, published in the concurrent special issue of Physiological Measurement.