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For: Toyabe S, Okamoto T, Watanabe-Nakayama T, Taketani H, Kudo S, Muneyuki E. Nonequilibrium energetics of a single F1-ATPase molecule. Phys Rev Lett 2010;104:198103. [PMID: 20867002 DOI: 10.1103/physrevlett.104.198103] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2010] [Indexed: 05/07/2023]
Number Cited by Other Article(s)
51
Cao Y, Gong Z, Quan HT. Thermodynamics of information processing based on enzyme kinetics: An exactly solvable model of an information pump. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;91:062117. [PMID: 26172671 DOI: 10.1103/physreve.91.062117] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Indexed: 06/04/2023]
52
Barato AC, Seifert U. Thermodynamic uncertainty relation for biomolecular processes. PHYSICAL REVIEW LETTERS 2015;114:158101. [PMID: 25933341 DOI: 10.1103/physrevlett.114.158101] [Citation(s) in RCA: 319] [Impact Index Per Article: 35.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2014] [Indexed: 05/18/2023]
53
Kanazawa K, Sano TG, Sagawa T, Hayakawa H. Minimal model of stochastic athermal systems: origin of non-Gaussian noise. PHYSICAL REVIEW LETTERS 2015;114:090601. [PMID: 25793791 DOI: 10.1103/physrevlett.114.090601] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2014] [Indexed: 06/04/2023]
54
Mishima H, Oshima H, Yasuda S, Kinoshita M. Statistical thermodynamics for functionally rotating mechanism of the multidrug efflux transporter AcrB. J Phys Chem B 2015;119:3423-33. [PMID: 25633129 DOI: 10.1021/jp5120724] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
55
Zimmermann E, Seifert U. Effective rates from thermodynamically consistent coarse-graining of models for molecular motors with probe particles. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;91:022709. [PMID: 25768533 DOI: 10.1103/physreve.91.022709] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Indexed: 06/04/2023]
56
Kawaguchi K, Sasa SI, Sagawa T. Nonequilibrium dissipation-free transport in F₁-ATPase and the thermodynamic role of asymmetric allosterism. Biophys J 2015;106:2450-7. [PMID: 24896124 DOI: 10.1016/j.bpj.2014.04.034] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2013] [Revised: 04/23/2014] [Accepted: 04/25/2014] [Indexed: 11/30/2022]  Open
57
Nakayama Y, Kawaguchi K. Invariance of steady-state thermodynamics between different scales of description. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;91:012115. [PMID: 25679578 DOI: 10.1103/physreve.91.012115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2014] [Indexed: 06/04/2023]
58
Lipfert J, van Oene MM, Lee M, Pedaci F, Dekker NH. Torque spectroscopy for the study of rotary motion in biological systems. Chem Rev 2014;115:1449-74. [PMID: 25541648 DOI: 10.1021/cr500119k] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
59
Watanabe R, Minagawa Y, Noji H. Thermodynamic analysis of F1-ATPase rotary catalysis using high-speed imaging. Protein Sci 2014;23:1773-9. [PMID: 25262814 DOI: 10.1002/pro.2559] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2014] [Accepted: 09/23/2014] [Indexed: 11/05/2022]
60
F-subunit reinforces torque generation in V-ATPase. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2014;43:415-22. [DOI: 10.1007/s00249-014-0973-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2014] [Revised: 05/15/2014] [Accepted: 05/29/2014] [Indexed: 01/05/2023]
61
Moro L, di Giosia M, Calvaresi M, Bakalis E, Zerbetto F. Operations and thermodynamics of an artificial rotary molecular motor in solution. Chemphyschem 2014;15:1834-40. [PMID: 24850308 DOI: 10.1002/cphc.201400061] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2014] [Revised: 04/04/2014] [Indexed: 11/11/2022]
62
Characterization of the temperature-sensitive reaction of F1-ATPase by using single-molecule manipulation. Sci Rep 2014;4:4962. [PMID: 24825532 PMCID: PMC4019956 DOI: 10.1038/srep04962] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2014] [Accepted: 04/24/2014] [Indexed: 11/08/2022]  Open
63
Lippiello E, Baiesi M, Sarracino A. Nonequilibrium fluctuation-dissipation theorem and heat production. PHYSICAL REVIEW LETTERS 2014;112:140602. [PMID: 24765939 DOI: 10.1103/physrevlett.112.140602] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2013] [Indexed: 06/03/2023]
64
Hayashi K, Pack CG, Sato MK, Mouri K, Kaizu K, Takahashi K, Okada Y. Viscosity and drag force involved in organelle transport: investigation of the fluctuation dissipation theorem. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2013;36:136. [PMID: 24297312 DOI: 10.1140/epje/i2013-13136-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2013] [Accepted: 11/06/2013] [Indexed: 06/02/2023]
65
Challis KJ, Jack MW. Thermal fluctuation statistics in a molecular motor described by a multidimensional master equation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013;88:062136. [PMID: 24483415 DOI: 10.1103/physreve.88.062136] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2013] [Indexed: 06/03/2023]
66
Toyabe S, Muneyuki E. Information-to-free-energy conversion: Utilizing thermal fluctuations. Biophysics (Nagoya-shi) 2013;9:107-12. [PMID: 27493548 PMCID: PMC4629685 DOI: 10.2142/biophysics.9.107] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2013] [Accepted: 06/26/2013] [Indexed: 12/02/2022]  Open
67
Kanada R, Sasaki K. Energetics of the single-headed kinesin KIF1A. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013;88:022711. [PMID: 24032868 DOI: 10.1103/physreve.88.022711] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2012] [Revised: 06/10/2013] [Indexed: 06/02/2023]
68
Kawaguchi K, Nakayama Y. Fluctuation theorem for hidden entropy production. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013;88:022147. [PMID: 24032814 DOI: 10.1103/physreve.88.022147] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2012] [Indexed: 06/02/2023]
69
Toyabe S, Muneyuki E. Experimental thermodynamics of single molecular motor. Biophysics (Nagoya-shi) 2013;9:91-8. [PMID: 27493546 PMCID: PMC4629675 DOI: 10.2142/biophysics.9.91] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2013] [Accepted: 06/12/2013] [Indexed: 12/01/2022]  Open
70
Tutu H, Nagata S. Robust unidirectional rotation in three-tooth Brownian rotary ratchet systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013;87:022144. [PMID: 23496496 DOI: 10.1103/physreve.87.022144] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2012] [Indexed: 06/01/2023]
71
Seifert U. Stochastic thermodynamics, fluctuation theorems and molecular machines. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2012;75:126001. [PMID: 23168354 DOI: 10.1088/0034-4885/75/12/126001] [Citation(s) in RCA: 1182] [Impact Index Per Article: 98.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
72
Lander B, Mehl J, Blickle V, Bechinger C, Seifert U. Noninvasive measurement of dissipation in colloidal systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012;86:030401. [PMID: 23030854 DOI: 10.1103/physreve.86.030401] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2012] [Indexed: 06/01/2023]
73
Kanazawa K, Sagawa T, Hayakawa H. Stochastic energetics for non-Gaussian processes. PHYSICAL REVIEW LETTERS 2012;108:210601. [PMID: 23003229 DOI: 10.1103/physrevlett.108.210601] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2011] [Revised: 02/17/2012] [Indexed: 06/01/2023]
74
Komoriya Y, Ariga T, Iino R, Imamura H, Okuno D, Noji H. Principal role of the arginine finger in rotary catalysis of F1-ATPase. J Biol Chem 2012;287:15134-42. [PMID: 22403407 DOI: 10.1074/jbc.m111.328153] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
75
Sagawa T, Ueda M. Nonequilibrium thermodynamics of feedback control. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012;85:021104. [PMID: 22463150 DOI: 10.1103/physreve.85.021104] [Citation(s) in RCA: 85] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2011] [Revised: 12/13/2011] [Indexed: 05/10/2023]
76
Abreu D, Seifert U. Thermodynamics of genuine nonequilibrium states under feedback control. PHYSICAL REVIEW LETTERS 2012;108:030601. [PMID: 22400724 DOI: 10.1103/physrevlett.108.030601] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2011] [Indexed: 05/31/2023]
77
Sagawa T. Thermodynamics of Information Processing in Small Systems*). ACTA ACUST UNITED AC 2012. [DOI: 10.1143/ptp.127.1] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
78
Perez-Carrasco R, Sancho JM. Molecular motors in conservative and dissipative regimes. Phys Rev E 2011;84:041915. [PMID: 22181183 DOI: 10.1103/physreve.84.041915] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2011] [Revised: 08/30/2011] [Indexed: 11/07/2022]
79
Tutu H, Hoshino Y. Design of two-tooth unidirectional rotary-ratchet molecular machines driven by linearly polarized ac fields. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011;84:061119. [PMID: 22304052 DOI: 10.1103/physreve.84.061119] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2011] [Revised: 11/21/2011] [Indexed: 05/31/2023]
80
Nemoto T, Sasa SI. Thermodynamic formula for the cumulant generating function of time-averaged current. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011;84:061113. [PMID: 22304046 DOI: 10.1103/physreve.84.061113] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2011] [Revised: 11/02/2011] [Indexed: 05/31/2023]
81
Thermodynamic efficiency and mechanochemical coupling of F1-ATPase. Proc Natl Acad Sci U S A 2011;108:17951-6. [PMID: 21997211 DOI: 10.1073/pnas.1106787108] [Citation(s) in RCA: 127] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
82
Miyazaki M, Harada T. Go-and-Back method: Effective estimation of the hidden motion of proteins from single-molecule time series. J Chem Phys 2011;134:135104. [DOI: 10.1063/1.3574396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
83
Nemoto T, Sasa SI. Variational formula for experimental determination of high-order correlations of current fluctuations in driven systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011;83:030105. [PMID: 21517437 DOI: 10.1103/physreve.83.030105] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2010] [Revised: 12/09/2010] [Indexed: 05/30/2023]
84
Seifert U. Stochastic thermodynamics of single enzymes and molecular motors. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2011;34:26. [PMID: 21400047 DOI: 10.1140/epje/i2011-11026-7] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2010] [Accepted: 02/17/2011] [Indexed: 05/18/2023]
85
Yoshidome T, Ito Y, Ikeguchi M, Kinoshita M. Rotation Mechanism of F1-ATPase: Crucial Importance of the Water Entropy Effect. J Am Chem Soc 2011;133:4030-9. [PMID: 21348521 DOI: 10.1021/ja109594y] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
86
Seifert U. Efficiency of autonomous soft nanomachines at maximum power. PHYSICAL REVIEW LETTERS 2011;106:020601. [PMID: 21405215 DOI: 10.1103/physrevlett.106.020601] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2010] [Indexed: 05/07/2023]
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