51
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Cao Y, Gong Z, Quan HT. Thermodynamics of information processing based on enzyme kinetics: An exactly solvable model of an information pump. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:062117. [PMID: 26172671 DOI: 10.1103/physreve.91.062117] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Indexed: 06/04/2023]
Abstract
Motivated by the recent proposed models of the information engine [Proc. Natl. Acad. Sci. USA 109, 11641 (2012)] and the information refrigerator [Phys. Rev. Lett. 111, 030602 (2013)], we propose a minimal model of the information pump and the information eraser based on enzyme kinetics. This device can either pump molecules against the chemical potential gradient by consuming the information to be encoded in the bit stream or (partially) erase the information initially encoded in the bit stream by consuming the Gibbs free energy. The dynamics of this model is solved exactly, and the "phase diagram" of the operation regimes is determined. The efficiency and the power of the information machine is analyzed. The validity of the second law of thermodynamics within our model is clarified. Our model offers a simple paradigm for the investigating of the thermodynamics of information processing involving the chemical potential in small systems.
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Affiliation(s)
- Yuansheng Cao
- School of Physics, Peking University, Beijing 100871, China
| | - Zongping Gong
- School of Physics, Peking University, Beijing 100871, China
| | - H T Quan
- School of Physics, Peking University, Beijing 100871, China
- Collaborative Innovation Center of Quantum Matter, Beijing 100871, China
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52
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Barato AC, Seifert U. Thermodynamic uncertainty relation for biomolecular processes. PHYSICAL REVIEW LETTERS 2015; 114:158101. [PMID: 25933341 DOI: 10.1103/physrevlett.114.158101] [Citation(s) in RCA: 319] [Impact Index Per Article: 35.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2014] [Indexed: 05/18/2023]
Abstract
Biomolecular systems like molecular motors or pumps, transcription and translation machinery, and other enzymatic reactions, can be described as Markov processes on a suitable network. We show quite generally that, in a steady state, the dispersion of observables, like the number of consumed or produced molecules or the number of steps of a motor, is constrained by the thermodynamic cost of generating it. An uncertainty ε requires at least a cost of 2k(B)T/ε2 independent of the time required to generate the output.
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Affiliation(s)
- Andre C Barato
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Udo Seifert
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
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53
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Kanazawa K, Sano TG, Sagawa T, Hayakawa H. Minimal model of stochastic athermal systems: origin of non-Gaussian noise. PHYSICAL REVIEW LETTERS 2015; 114:090601. [PMID: 25793791 DOI: 10.1103/physrevlett.114.090601] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2014] [Indexed: 06/04/2023]
Abstract
For a wide class of stochastic athermal systems, we derive Langevin-like equations driven by non-Gaussian noise, starting from master equations and developing a new asymptotic expansion. We found an explicit condition whereby the non-Gaussian properties of the athermal noise become dominant for tracer particles associated with both thermal and athermal environments. Furthermore, we derive an inverse formula to infer microscopic properties of the athermal bath from the statistics of the tracer particle. We apply our formulation to a granular motor under viscous friction and analytically obtain the angular velocity distribution function. Our theory demonstrates that the non-Gaussian Langevin equation is the minimal model of athermal systems.
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Affiliation(s)
- Kiyoshi Kanazawa
- Yukawa Institute for Theoretical Physics, Kyoto University, Kitashirakawa-oiwake cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Tomohiko G Sano
- Yukawa Institute for Theoretical Physics, Kyoto University, Kitashirakawa-oiwake cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Takahiro Sagawa
- Department of Basic Science, The University of Tokyo, Komaba, Meguro-ku 153-8902, Japan
| | - Hisao Hayakawa
- Yukawa Institute for Theoretical Physics, Kyoto University, Kitashirakawa-oiwake cho, Sakyo-ku, Kyoto 606-8502, Japan
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54
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Mishima H, Oshima H, Yasuda S, Kinoshita M. Statistical thermodynamics for functionally rotating mechanism of the multidrug efflux transporter AcrB. J Phys Chem B 2015; 119:3423-33. [PMID: 25633129 DOI: 10.1021/jp5120724] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
AcrB, a homotrimer, is the pivotal part of a multidrug efflux pump. A "functionally rotating" picture has been proposed for the drug transport by AcrB, but its mechanism remains unresolved. Here, we investigate the energetics of the whole functional rotation cycle using our theoretical methods. We find that the packing efficiency of AcrB is ununiform, and this ununiformity plays imperative roles primarily through the solvent-entropy effect. When a proton binds to or dissociates from a protomer, the packing properties of this protomer and its two interfaces are perturbed overall in the direction that the solvent translational entropy is lowered. The packing properties of the other two protomers are then reorganized with the recovery or maintenance of closely packed interfaces, so that the solvent-entropy loss can be compensated. The functional structural change by an isolated protomer would cause a seriously large free-energy increase. By forming a trimer, any free-energy increase caused by a protomer is always canceled out by the free-energy decrease brought by the other two protomers via the mechanism mentioned above. The functional structural rotation is thus accomplished using the free-energy decrease arising from the transfer of only a single proton per cycle. The similarities to F1-ATPase are also discussed.
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Affiliation(s)
- Hirokazu Mishima
- Graduate School of Energy Science and ‡Institute of Advanced Energy, Kyoto University , Uji, Kyoto 611-0011, Japan
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55
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Zimmermann E, Seifert U. Effective rates from thermodynamically consistent coarse-graining of models for molecular motors with probe particles. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:022709. [PMID: 25768533 DOI: 10.1103/physreve.91.022709] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Indexed: 06/04/2023]
Abstract
Many single-molecule experiments for molecular motors comprise not only the motor but also large probe particles coupled to it. The theoretical analysis of these assays, however, often takes into account only the degrees of freedom representing the motor. We present a coarse-graining method that maps a model comprising two coupled degrees of freedom which represent motor and probe particle to such an effective one-particle model by eliminating the dynamics of the probe particle in a thermodynamically and dynamically consistent way. The coarse-grained rates obey a local detailed balance condition and reproduce the net currents. Moreover, the average entropy production as well as the thermodynamic efficiency is invariant under this coarse-graining procedure. Our analysis reveals that only by assuming unrealistically fast probe particles, the coarse-grained transition rates coincide with the transition rates of the traditionally used one-particle motor models. Additionally, we find that for multicyclic motors the stall force can depend on the probe size. We apply this coarse-graining method to specific case studies of the F(1)-ATPase and the kinesin motor.
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Affiliation(s)
- Eva Zimmermann
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Udo Seifert
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
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56
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Kawaguchi K, Sasa SI, Sagawa T. Nonequilibrium dissipation-free transport in F₁-ATPase and the thermodynamic role of asymmetric allosterism. Biophys J 2015; 106:2450-7. [PMID: 24896124 DOI: 10.1016/j.bpj.2014.04.034] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2013] [Revised: 04/23/2014] [Accepted: 04/25/2014] [Indexed: 11/30/2022] Open
Abstract
F1-ATPase (or F1), the highly efficient and reversible biochemical engine, has motivated physicists as well as biologists to imagine the design principles governing machines in the fluctuating world. Recent experiments have clarified yet another interesting property of F1; the dissipative heat inside the motor is very small, irrespective of the velocity of rotation and energy transport. Conceptual interest is devoted to the fact that the amount of internal dissipation is not simply determined by the sequence of equilibrium pictures, but also relies on the rotational-angular dependence of nucleotide affinity, which is a truly nonequilibrium aspect. We propose that the totally asymmetric allosteric model (TASAM), where adenosine triphosphate (ATP) binding to F1 is assumed to have low dependence on the angle of the rotating shaft, produces results that are most consistent with the experiments. Theoretical analysis proves the crucial role of two time scales in the model, which explains the universal mechanism to produce the internal dissipation-free feature. The model reproduces the characteristic torque dependence of the rotational velocity of F1 and predicts that the internal dissipation upon the ATP synthesis direction rotation becomes large at the low nucleotide condition.
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Affiliation(s)
- Kyogo Kawaguchi
- Department of Physics, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.
| | - Shin-Ichi Sasa
- Department of Physics, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Takahiro Sagawa
- Department of Basic Science, The University of Tokyo, Meguro-ku, Tokyo 153-8902, Japan
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57
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Nakayama Y, Kawaguchi K. Invariance of steady-state thermodynamics between different scales of description. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:012115. [PMID: 25679578 DOI: 10.1103/physreve.91.012115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2014] [Indexed: 06/04/2023]
Abstract
By considering general Markov stochastic dynamics and its coarse graining, we study the framework of stochastic thermodynamics for the original and reduced descriptions corresponding to different scales. We are especially concerned with the case where the irreversible entropy production has a finite difference between the scales. We find that the sum of the increment of the nonequilibrium entropy and the excess part of the entropy production, which are key quantities in the construction of steady-state thermodynamics, is essentially kept invariant with respect to the change in the scales of description. This general result justifies experimental approaches toward steady-state thermodynamics based on coarse-grained variables. We demonstrate our result in a mesoscopic heat engine system.
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Affiliation(s)
- Yohei Nakayama
- Department of Physics, The University of Tokyo, Bunkyo, Tokyo 113-0033, Japan
| | - Kyogo Kawaguchi
- Department of Physics, The University of Tokyo, Bunkyo, Tokyo 113-0033, Japan
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58
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Lipfert J, van Oene MM, Lee M, Pedaci F, Dekker NH. Torque spectroscopy for the study of rotary motion in biological systems. Chem Rev 2014; 115:1449-74. [PMID: 25541648 DOI: 10.1021/cr500119k] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Jan Lipfert
- Department of Physics, Nanosystems Initiative Munich, and Center for NanoScience (CeNS), Ludwig-Maximilian-University Munich , Amalienstrasse 54, 80799 Munich, Germany
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59
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Watanabe R, Minagawa Y, Noji H. Thermodynamic analysis of F1-ATPase rotary catalysis using high-speed imaging. Protein Sci 2014; 23:1773-9. [PMID: 25262814 DOI: 10.1002/pro.2559] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2014] [Accepted: 09/23/2014] [Indexed: 11/05/2022]
Abstract
F1-ATPase (F1) is a rotary motor protein fueled by ATP hydrolysis. Although the mechanism for coupling rotation and catalysis has been well studied, the molecular details of individual reaction steps remain elusive. In this study, we performed high-speed imaging of F1 rotation at various temperatures using the total internal reflection dark-field (TIRDF) illumination system, which allows resolution of the F1 catalytic reaction into elementary reaction steps with a high temporal resolution of 72 µs. At a high concentration of ATP, F1 rotation comprised distinct 80° and 40° substeps. The 80° substep, which exhibited significant temperature dependence, is triggered by the temperature-sensitive reaction, whereas the 40° substep is triggered by ATP hydrolysis and the release of inorganic phosphate (Pi). Then, we conducted Arrhenius analysis of the reaction rates to obtain the thermodynamic parameters for individual reaction steps, that is, ATP binding, ATP hydrolysis, Pi release, and TS reaction. Although all reaction steps exhibited similar activation free energy values, ΔG(‡) = 53-56 kJ mol(-1), the contributions of the enthalpy (ΔH(‡)), and entropy (ΔS(‡)) terms were significantly different; the reaction steps that induce tight subunit packing, for example, ATP binding and TS reaction, showed high positive values of both ΔH(‡) and ΔS(‡). The results may reflect modulation of the excluded volume as a function of subunit packing tightness at individual reaction steps, leading to a gain or loss in water entropy.
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Affiliation(s)
- Rikiya Watanabe
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, Bunkyo-ku, Tokyo, 113-8656, Japan; PRESTO, JST, Bunkyo-ku, Tokyo, 113-8656, Japan
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60
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F-subunit reinforces torque generation in V-ATPase. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2014; 43:415-22. [DOI: 10.1007/s00249-014-0973-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2014] [Revised: 05/15/2014] [Accepted: 05/29/2014] [Indexed: 01/05/2023]
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61
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Moro L, di Giosia M, Calvaresi M, Bakalis E, Zerbetto F. Operations and thermodynamics of an artificial rotary molecular motor in solution. Chemphyschem 2014; 15:1834-40. [PMID: 24850308 DOI: 10.1002/cphc.201400061] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2014] [Revised: 04/04/2014] [Indexed: 11/11/2022]
Abstract
A general framework is provided that makes possible the estimation of time-dependent properties of a stochastic system moving far from equilibrium. The process is investigated and discussed in general terms of nonequilibrium thermodynamics. The approach is simple and can be exploited to gain insight into the dynamics of any molecular-level machine. As a case study, the dynamics of an artificial molecular rotary motor, similar to the inversion of a helix, which drives the motor from a metastable state to equilibrium, are examined. The energy path that the motor walks was obtained from the results of atomistic calculations. The motor undergoes unidirectional rotation and its entropy, internal energy, free energy, and net exerted force are given as a function of time, starting from the solution of Smoluchowski's equation. The rather low value of the organization index, that is, the ratio of the work done by the particle against friction during the unidirectional motion per available free energy, reveals that the motion is mainly subject to randomness, and the amount of energy converted to heat due to the directional motion is very small.
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Affiliation(s)
- Lorenzo Moro
- Dipartimento di Chimica "G. Ciamician", Universita di Bologna, Via F. Selmi 2, 40126 Bologna (Italy)
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62
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Characterization of the temperature-sensitive reaction of F1-ATPase by using single-molecule manipulation. Sci Rep 2014; 4:4962. [PMID: 24825532 PMCID: PMC4019956 DOI: 10.1038/srep04962] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2014] [Accepted: 04/24/2014] [Indexed: 11/08/2022] Open
Abstract
F1-ATPase (F1) is a rotary motor protein that couples ATP hydrolysis to mechanical rotation with high efficiency. In our recent study, we observed a highly temperature-sensitive (TS) step in the reaction catalyzed by a thermophilic F1 that was characterized by a rate constant remarkably sensitive to temperature and had a Q10 factor of 6-19. Since reactions with high Q10 values are considered to involve large conformational changes, we speculated that the TS reaction plays a key role in the rotation of F1. To clarify the role of the TS reaction, in this study, we conducted a stall and release experiment using magnetic tweezers, and assessed the torque generated during the TS reaction. The results indicate that the TS reaction generates the same amount of rotational torque as does ATP binding, but more than that generated during ATP hydrolysis. Thus, we confirmed that the TS reaction contributes significantly to the rotation of F1.
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63
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Lippiello E, Baiesi M, Sarracino A. Nonequilibrium fluctuation-dissipation theorem and heat production. PHYSICAL REVIEW LETTERS 2014; 112:140602. [PMID: 24765939 DOI: 10.1103/physrevlett.112.140602] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2013] [Indexed: 06/03/2023]
Abstract
We use a relationship between response and correlation function in nonequilibrium systems to establish a connection between the heat production and the deviations from the equilibrium fluctuation-dissipation theorem. This scheme extends the Harada-Sasa formulation [Phys. Rev. Lett. 95, 130602 (2005)], obtained for Langevin equations in steady states, as it also holds for transient regimes and for discrete jump processes involving small entropic changes. Moreover, a general formulation includes two times and the new concepts of two-time work, kinetic energy, and of a two-time heat exchange that can be related to a nonequilibrium “effective temperature.” Numerical simulations of a chain of anharmonic oscillators and of a model for a molecular motor driven by adenosine triphosphate hydrolysis illustrate these points.
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Affiliation(s)
- E Lippiello
- Department of Mathematics and Physics, Second University of Naples, Via Vivaldi 43, 81100 Caserta, Italy
| | - M Baiesi
- Department of Physics and Astronomy, University of Padua, Via Marzolo 8, I-35131 Padova, Italy and INFN, Sezione di Padova, Via Marzolo 8, I-35131 Padova, Italy
| | - A Sarracino
- ISC-CNR and Dipartimento di Fisica, Università "Sapienza", piazzale A. Moro 2, 00185 Rome, Italy and Laboratoire de Physique Théorique de la Matière Condensée, CNRS UMR 7600, case courrier 121, Université Paris 6, 4 Place Jussieu, 75255 Paris Cedex, France
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64
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Hayashi K, Pack CG, Sato MK, Mouri K, Kaizu K, Takahashi K, Okada Y. Viscosity and drag force involved in organelle transport: investigation of the fluctuation dissipation theorem. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2013; 36:136. [PMID: 24297312 DOI: 10.1140/epje/i2013-13136-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2013] [Accepted: 11/06/2013] [Indexed: 06/02/2023]
Abstract
We observed the motion of an organelle transported by motor proteins in cells using fluorescence microscopy. Particularly, among organelles, the mitochondria in PC12 cells were studied. A mitochondrion was dragged at a constant speed for several seconds without pausing. We investigated the fluctuation dissipation theorem for this constant drag motion by comparing it with the motion of Brownian beads that were incorporated into the cells by an electroporation method. We estimated the viscosity value inside cells from the diffusion coefficients of the beads. Then the viscosity value obtained by using the beads was found to be slightly lower than that obtained from the diffusion coefficient for the organelle motion via the Einstein relation. This discrepancy indicates the violation of the Einstein relation for the organelle motion.
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Affiliation(s)
- K Hayashi
- School of Engineering, Tohoku University, Sendai, Japan,
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65
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Challis KJ, Jack MW. Thermal fluctuation statistics in a molecular motor described by a multidimensional master equation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 88:062136. [PMID: 24483415 DOI: 10.1103/physreve.88.062136] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2013] [Indexed: 06/03/2023]
Abstract
We present a theoretical investigation of thermal fluctuation statistics in a molecular motor. Energy transfer in the motor is described using a multidimensional discrete master equation with nearest-neighbor hopping. In this theory, energy transfer leads to statistical correlations between thermal fluctuations in different degrees of freedom. For long times, the energy transfer is a multivariate diffusion process with constant drift and diffusion. The fluctuations and drift align in the strong-coupling limit enabling a one-dimensional description along the coupled coordinate. We derive formal expressions for the probability distribution and simulate single trajectories of the system in the near- and far-from-equilibrium limits both for strong and weak coupling. Our results show that the hopping statistics provide an opportunity to distinguish different operating regimes.
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Affiliation(s)
- K J Challis
- Scion, 49 Sala Street, Private Bag 3020, Rotorua 3046, New Zealand
| | - M W Jack
- Scion, 49 Sala Street, Private Bag 3020, Rotorua 3046, New Zealand
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66
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Toyabe S, Muneyuki E. Information-to-free-energy conversion: Utilizing thermal fluctuations. Biophysics (Nagoya-shi) 2013; 9:107-12. [PMID: 27493548 PMCID: PMC4629685 DOI: 10.2142/biophysics.9.107] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2013] [Accepted: 06/26/2013] [Indexed: 12/02/2022] Open
Abstract
Maxwell’s demon is a hypothetical creature that can convert information to free energy. A debate that has lasted for more than 100 years has revealed that the demon’s operation does not contradict the laws of thermodynamics; hence, the demon can be realized physically. We briefly review the first experimental demonstration of Maxwell’s demon of Szilard’s engine type that converts information to free energy. We pump heat from an isothermal environment by using the information about the thermal fluctuations of a Brownian particle and increase the particle’s free energy.
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Affiliation(s)
- Shoichi Toyabe
- Systems Biophysics, Faculty of Physics, Ludwig-Maximilians-University Munich, Munich 80799, Germany
| | - Eiro Muneyuki
- Department of Physics, Faculty of Science and Engineering, Chuo University, Kasuga, Tokyo 112-8551, Japan
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67
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Kanada R, Sasaki K. Energetics of the single-headed kinesin KIF1A. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 88:022711. [PMID: 24032868 DOI: 10.1103/physreve.88.022711] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2012] [Revised: 06/10/2013] [Indexed: 06/02/2023]
Abstract
KIF1A is a single-headed molecular motor that moves processively and unidirectionally along a microtubule by using the chemical energy released by hydrolyzing adenosine triphosphate (ATP) into adenosine diphosphate (ADP) and inorganic phosphate (P(i)). Although the movement of KIF1A seems to have successfully been explained by a simple Brownian motor model of the flashing ratchet type, this model is not suited to discuss the energetics of KIF1A. We introduce an elaborated model of the ratchet type to investigate how the chemical free energy is converted into mechanical work by taking account of the binding and release of reactant (ATP) and product (ADP and P(i)) molecules to and from the motor. The efficiency of energy transduction, the power output, and other quantities are calculated from the analytically obtained steady-state solution of the Fokker-Planck equations. It turns out that the concentrations of the reactant and product molecules that optimize both the efficiency and the power are close to those in the cell.
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Affiliation(s)
- Ryo Kanada
- Cybermedia Center, Osaka University, Toyonaka 560-0043, Japan and Department of Biophysics Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
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68
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Kawaguchi K, Nakayama Y. Fluctuation theorem for hidden entropy production. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 88:022147. [PMID: 24032814 DOI: 10.1103/physreve.88.022147] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2012] [Indexed: 06/02/2023]
Abstract
Elimination of seemingly unnecessary variables in Markovian models may cause a difference in the value of irreversible entropy production between the original and reduced dynamics. We show that such difference, which we call the hidden entropy production, obeys an integral fluctuation theorem if all variables are time-reversal invariant, or if the density function is symmetric with respect to the change of sign of the time-reversal antisymmetric variables. The theorem has wide applicability, since the proposed condition is mostly satisfied in the case where the hidden fast variables are equilibrated. The main consequence of this theorem is that the entropy production decreases by the coarse-graining procedure. By contrast, in the case where a stochastic process is obtained by coarse-graining a deterministic and reversible dynamics, the entropy production may increase, implying that the integral fluctuation theorem should not hold for such reductions. We reveal, with an explicit example, that the nonequilibrated time-reversal antisymmetric variables play a crucial role in distinguishing these two cases, thus guaranteeing the consistency of the presented theorem.
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Affiliation(s)
- Kyogo Kawaguchi
- Department of Physics, The University of Tokyo, Hongo 7-3-1, Tokyo 113-0033, Japan
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69
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Toyabe S, Muneyuki E. Experimental thermodynamics of single molecular motor. Biophysics (Nagoya-shi) 2013; 9:91-8. [PMID: 27493546 PMCID: PMC4629675 DOI: 10.2142/biophysics.9.91] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2013] [Accepted: 06/12/2013] [Indexed: 12/01/2022] Open
Abstract
Molecular motor is a nano-sized chemical engine that converts chemical free energy to mechanical motions. Hence, the energetics is as important as kinetics in order to understand its operation principle. We review experiments to evaluate the thermodynamic properties of a rotational F1-ATPase motor (F1-motor) at a single-molecule level. We show that the F1-motor achieves 100% thermo dynamic efficiency at the stalled state. Furthermore, the motor reduces the internal irreversible heat inside the motor to almost zero and achieves a highly-efficient free energy transduction close to 100% during rotations far from quasistatic process. We discuss the mechanism of how the F1-motor achieves such a high efficiency, which highlights the remarkable property of the nano-sized engine F1-motor.
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Affiliation(s)
- Shoichi Toyabe
- Systems Biophysics, Faculty of Physics, Ludwig-Maximilians-University Munich, Munich 80799, Germany
| | - Eiro Muneyuki
- Department of Physics, Faculty of Science and Engineering, Chuo University, Kasuga, Tokyo 112-8551, Japan
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70
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Tutu H, Nagata S. Robust unidirectional rotation in three-tooth Brownian rotary ratchet systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:022144. [PMID: 23496496 DOI: 10.1103/physreve.87.022144] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2012] [Indexed: 06/01/2023]
Abstract
We apply a simple Brownian ratchet model to an artificial molecular rotary system mounted in a biological membrane, in which the rotor always maintains unidirectional rotation in response to a linearly polarized weak ac field. Because the rotor and stator compose a ratchet system, we describe the motion of the rotor tip with the Langevin equation for a particle in a two-dimensional three-tooth ratchet potential of threefold symmetry. Unidirectional rotation can be induced under the field and optimized by stochastic resonance, wherein the mean angular momentum (MAM) of the rotor exhibits a bell-shaped curve for the noise strength. We obtain analytical expressions for the MAM and power loss from the corresponding Fokker-Planck equation, via a Markov transition model for coarse-grained states (six-state model). The MAM expression reveals a significant effect depending on the chirality of the ratchet potential: in achiral cases, the MAM approximately vanishes with respect to the polarization angle φ of the field; in chiral cases, the MAM does not crucially depend on φ, but depends on the direction of the ratchet; i.e., the parity of the unidirectional rotation is inherent in the ratchet structure. This feature is useful for artificial rotary systems to maintain robust unidirectional rotation independent of the mounting condition.
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Affiliation(s)
- Hiroki Tutu
- Department of Applied Analysis and Complex Dynamical Systems, Graduate School of Informatics, Kyoto University, Kyoto 606-8501, Japan
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71
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Seifert U. Stochastic thermodynamics, fluctuation theorems and molecular machines. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2012; 75:126001. [PMID: 23168354 DOI: 10.1088/0034-4885/75/12/126001] [Citation(s) in RCA: 1182] [Impact Index Per Article: 98.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Stochastic thermodynamics as reviewed here systematically provides a framework for extending the notions of classical thermodynamics such as work, heat and entropy production to the level of individual trajectories of well-defined non-equilibrium ensembles. It applies whenever a non-equilibrium process is still coupled to one (or several) heat bath(s) of constant temperature. Paradigmatic systems are single colloidal particles in time-dependent laser traps, polymers in external flow, enzymes and molecular motors in single molecule assays, small biochemical networks and thermoelectric devices involving single electron transport. For such systems, a first-law like energy balance can be identified along fluctuating trajectories. For a basic Markovian dynamics implemented either on the continuum level with Langevin equations or on a discrete set of states as a master equation, thermodynamic consistency imposes a local-detailed balance constraint on noise and rates, respectively. Various integral and detailed fluctuation theorems, which are derived here in a unifying approach from one master theorem, constrain the probability distributions for work, heat and entropy production depending on the nature of the system and the choice of non-equilibrium conditions. For non-equilibrium steady states, particularly strong results hold like a generalized fluctuation-dissipation theorem involving entropy production. Ramifications and applications of these concepts include optimal driving between specified states in finite time, the role of measurement-based feedback processes and the relation between dissipation and irreversibility. Efficiency and, in particular, efficiency at maximum power can be discussed systematically beyond the linear response regime for two classes of molecular machines, isothermal ones such as molecular motors, and heat engines such as thermoelectric devices, using a common framework based on a cycle decomposition of entropy production.
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Affiliation(s)
- Udo Seifert
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
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72
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Lander B, Mehl J, Blickle V, Bechinger C, Seifert U. Noninvasive measurement of dissipation in colloidal systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:030401. [PMID: 23030854 DOI: 10.1103/physreve.86.030401] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2012] [Indexed: 06/01/2023]
Abstract
According to Harada and Sasa [Phys. Rev. Lett. 95, 130602 (2005)], heat production generated in a nonequilibrium steady state can be inferred from measuring response and correlation functions. In many colloidal systems, however, it is a nontrivial task to determine response functions, whereas details about spatial steady state trajectories are easily accessible. Using a simple conditional averaging procedure, we show how this fact can be exploited to reliably evaluate average heat production. We test this method using Brownian dynamics simulations, and apply it to experimental data of an interacting driven colloidal system.
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Affiliation(s)
- B Lander
- II. Institut für Theoretische Physik, Universität Stuttgart, Pfaffenwaldring 57, 70550 Stuttgart, Germany
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73
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Kanazawa K, Sagawa T, Hayakawa H. Stochastic energetics for non-Gaussian processes. PHYSICAL REVIEW LETTERS 2012; 108:210601. [PMID: 23003229 DOI: 10.1103/physrevlett.108.210601] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2011] [Revised: 02/17/2012] [Indexed: 06/01/2023]
Abstract
By introducing a new stochastic integral, we investigate the energetics of classical stochastic systems driven by non-Gaussian white noises. In particular, we introduce a decomposition of the total energy difference into the work and the heat for each trajectory, and derive a formula to calculate the heat from experimental data on the dynamics. We apply our formulation and results to a Langevin system driven by a Poisson noise.
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Affiliation(s)
- Kiyoshi Kanazawa
- Yukawa Institute for Theoretical Physics, Kyoto University, Sakyo-ku, Kyoto, Japan
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74
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Komoriya Y, Ariga T, Iino R, Imamura H, Okuno D, Noji H. Principal role of the arginine finger in rotary catalysis of F1-ATPase. J Biol Chem 2012; 287:15134-42. [PMID: 22403407 DOI: 10.1074/jbc.m111.328153] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
F(1)-ATPase (F(1)) is an ATP-driven rotary motor wherein the γ subunit rotates against the surrounding α(3)β(3) stator ring. The 3 catalytic sites of F(1) reside on the interface of the α and β subunits of the α(3)β(3) ring. While the catalytic residues predominantly reside on the β subunit, the α subunit has 1 catalytically critical arginine, termed the arginine finger, with stereogeometric similarities with the arginine finger of G-protein-activating proteins. However, the principal role of the arginine finger of F(1) remains controversial. We studied the role of the arginine finger by analyzing the rotation of a mutant F(1) with a lysine substitution of the arginine finger. The mutant showed a 350-fold longer catalytic pause than the wild-type; this pause was further lengthened by the slowly hydrolyzed ATP analog ATPγS. On the other hand, the mutant F(1) showed highly unidirectional rotation with a coupling ratio of 3 ATPs/turn, the same as wild-type, suggesting that cooperative torque generation by the 3 β subunits was not impaired. The hybrid F(1) carrying a single copy of the α mutant revealed that the reaction step slowed by the mutation occurs at +200° from the binding angle of the mutant subunit. Thus, the principal role of the arginine finger is not to mediate cooperativity among the catalytic sites, but to enhance the rate of the ATP cleavage by stabilizing the transition state of ATP hydrolysis. Lysine substitution also caused frequent pauses because of severe ADP inhibition, and a slight decrease in ATP-binding rate.
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Affiliation(s)
- Yoshihito Komoriya
- Graduate School of Frontier Bioscience, Osaka University, 1-3 Yamadaoka, Suita, Osaka 565-0871, Japan
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75
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Sagawa T, Ueda M. Nonequilibrium thermodynamics of feedback control. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:021104. [PMID: 22463150 DOI: 10.1103/physreve.85.021104] [Citation(s) in RCA: 85] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2011] [Revised: 12/13/2011] [Indexed: 05/10/2023]
Abstract
We establish a general theory of feedback control on classical stochastic thermodynamic systems and generalize nonequilibrium equalities such as the fluctuation theorem and the Jarzynski equality in the presence of feedback control with multiple measurements. Our results are generalizations of the previous relevant works to the situations with general measurements and multiple heat baths. The obtained equalities involve additional terms that characterize the information obtained by measurements or the efficacy of feedback control. A generalized Szilard engine and a feedback-controlled ratchet are shown to satisfy the derived equalities.
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76
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Abreu D, Seifert U. Thermodynamics of genuine nonequilibrium states under feedback control. PHYSICAL REVIEW LETTERS 2012; 108:030601. [PMID: 22400724 DOI: 10.1103/physrevlett.108.030601] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2011] [Indexed: 05/31/2023]
Abstract
For genuine nonequilibrium states that even at fixed external control parameter exhibit dissipation, we extend the Hatano-Sasa equality to processes with feedback control. The resulting bound on the maximal extractable work is substantially sharper than what would follow from applying the Sagawa-Ueda equality to transitions involving such states. For repeated measurements at short enough intervals, the power thus extracted can even exceed the average cost of driving as demonstrated explicitly with a simple, analytically solvable example.
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Affiliation(s)
- David Abreu
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
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77
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78
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Perez-Carrasco R, Sancho JM. Molecular motors in conservative and dissipative regimes. Phys Rev E 2011; 84:041915. [PMID: 22181183 DOI: 10.1103/physreve.84.041915] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2011] [Revised: 08/30/2011] [Indexed: 11/07/2022]
Abstract
We present a theoretical study of a rotatory molecular motor under a conservative torque regime. We show that conservative and dissipative regimes present a different observable phenomenology. Our approach starts with a preliminary deterministic calculation of the motor cycle, which is complemented with stochastic simulations of a Langevin equation under a flashing ratchet potential. Finally, by using parameter values obtained from independent experimental information, our theoretical predictions are compared with experimental data of the F(1)-ATPase motor of the Bacillus PS3.
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Affiliation(s)
- R Perez-Carrasco
- Departament d'Estructura i Constituents de la Matèria, Universitat de Barcelona, Carrer Martí i Franquès 1, E-08028 Barcelona, Spain
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79
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Tutu H, Hoshino Y. Design of two-tooth unidirectional rotary-ratchet molecular machines driven by linearly polarized ac fields. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 84:061119. [PMID: 22304052 DOI: 10.1103/physreve.84.061119] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2011] [Revised: 11/21/2011] [Indexed: 05/31/2023]
Abstract
An artificial molecular rotor system mounted in a biological membrane, which can unidirectionally rotate in response to weak pumping from a linearly polarized ac field, is modeled. The dynamics of the rotor unit are described by the Langevin equation for a particle in a two-dimensional bistable potential with a two-tooth ratchet structure. This model reveals effects due to the two-dimensionality of the ratchet and the polarization of the applied field. First, we demonstrate that a unidirectional rotation appears with stochastic resonance exhibiting a bell-shaped peak for noise intensity in the mean angular momentum (MAM) of the rotor. An analytical expression for the MAM, (L), is obtained on the basis of a four-state Markov approximation. Second, a significant effect due to torsional nonlinearity (representing the ratchet-like structure) in the potential geometry is quantified: in the absence of torsion, the MAM depends on the polarization angle φ of the applied field as (L) sin(2φ), whereas in the presence of torsion, an additional bias appears in the MAM as (L)(bias + sin(2φ)). It is found that this effect can be used to make the rotor system robustly maintain rotation in a single direction independent of the mounting conditions. Possible designs for an artificial molecular rotor system using the torsion effect are discussed.
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Affiliation(s)
- Hiroki Tutu
- Department of Applied Analysis and Complex Dynamical Systems, Graduate School of Informatics, Kyoto University, Kyoto 606-8501, Japan
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80
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Nemoto T, Sasa SI. Thermodynamic formula for the cumulant generating function of time-averaged current. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 84:061113. [PMID: 22304046 DOI: 10.1103/physreve.84.061113] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2011] [Revised: 11/02/2011] [Indexed: 05/31/2023]
Abstract
The cumulant generating function of time-averaged current is studied from an operational viewpoint. Specifically, for interacting Brownian particles under nonequilibrium conditions, we show that the first derivative of the cumulant generating function is equal to the expectation value of the current in a modified system with an extra force added, where the modified system is characterized by a variational principle. The formula reminds us of Einstein's fluctuation theory in equilibrium statistical mechanics. Furthermore, since the formula leads to the fluctuation-dissipation relation when the linear response regime is focused on, it is regarded as an extension of the linear response theory to that valid beyond the linear response regime. The formula is also related to previously known theories such as the Donsker-Varadhan theory, the additivity principle, and the least dissipation principle, but it is not derived from them. Examples of its application are presented for a driven Brownian particle on a ring subject to a periodic potential.
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Affiliation(s)
- Takahiro Nemoto
- Department of Pure and Applied Sciences, University of Tokyo, Tokyo 153-8902, Japan
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81
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Abstract
F(1)-ATPase is a nanosized biological energy transducer working as part of F(o)F(1)-ATP synthase. Its rotary machinery transduces energy between chemical free energy and mechanical work and plays a central role in the cellular energy transduction by synthesizing most ATP in virtually all organisms. However, information about its energetics is limited compared to that of the reaction scheme. Actually, fundamental questions such as how efficiently F(1)-ATPase transduces free energy remain unanswered. Here, we demonstrated reversible rotations of isolated F(1)-ATPase in discrete 120° steps by precisely controlling both the external torque and the chemical potential of ATP hydrolysis as a model system of F(o)F(1)-ATP synthase. We found that the maximum work performed by F(1)-ATPase per 120° step is nearly equal to the thermodynamical maximum work that can be extracted from a single ATP hydrolysis under a broad range of conditions. Our results suggested a 100% free-energy transduction efficiency and a tight mechanochemical coupling of F(1)-ATPase.
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82
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Miyazaki M, Harada T. Go-and-Back method: Effective estimation of the hidden motion of proteins from single-molecule time series. J Chem Phys 2011; 134:135104. [DOI: 10.1063/1.3574396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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83
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Nemoto T, Sasa SI. Variational formula for experimental determination of high-order correlations of current fluctuations in driven systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 83:030105. [PMID: 21517437 DOI: 10.1103/physreve.83.030105] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2010] [Revised: 12/09/2010] [Indexed: 05/30/2023]
Abstract
For Brownian motion of a single-particle subject to a tilted periodic potential on a ring, we propose a formula for experimentally determining the cumulant generating function of time-averaged current without measurements of current fluctuations. We first derive this formula phenomenologically on the basis of two key relations: a fluctuation relation associated with Onsager's principle of the least-energy dissipation in a sufficiently local region and an additivity relation by which spatially inhomogeneous fluctuations can be properly considered. We then derive the formula without any phenomenological assumptions. We also demonstrate its practical advantage by numerical experiments.
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Affiliation(s)
- Takahiro Nemoto
- Department of Basic Science, The University of Tokyo, Tokyo 153-8902, Japan
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84
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Seifert U. Stochastic thermodynamics of single enzymes and molecular motors. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2011; 34:26. [PMID: 21400047 DOI: 10.1140/epje/i2011-11026-7] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2010] [Accepted: 02/17/2011] [Indexed: 05/18/2023]
Abstract
For a single enzyme or molecular motor operating in an aqueous solution of non-equilibrated solute concentrations, a thermodynamic description is developed on the level of an individual trajectory of transitions between states. The concept of internal energy, intrinsic entropy and free energy for states follows from a microscopic description using one assumption on time scale separation. A first-law energy balance then allows the unique identification of the heat dissipated in one transition. Consistency with the second law on the ensemble level enforces both stochastic entropy as third contribution to the entropy change involved in one transition and the local detailed balance condition for the ratio between forward and backward rates for any transition. These results follow without assuming weak coupling between the enzyme and the solutes, ideal solution behavior or mass action law kinetics. The present approach highlights both the crucial role of the intrinsic entropy of each state and the physically questionable role of chemiostats for deriving the first law for molecular motors subject to an external force under realistic conditions.
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Affiliation(s)
- U Seifert
- Institut für Theoretische Physik, Universität Stuttgart, Germany.
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85
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Yoshidome T, Ito Y, Ikeguchi M, Kinoshita M. Rotation Mechanism of F1-ATPase: Crucial Importance of the Water Entropy Effect. J Am Chem Soc 2011; 133:4030-9. [PMID: 21348521 DOI: 10.1021/ja109594y] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Takashi Yoshidome
- Institute of Advanced Energy, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Yuko Ito
- Graduate School of Nanobioscience, Yokohama City University, 1-7-29, Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan
| | - Mitsunori Ikeguchi
- Graduate School of Nanobioscience, Yokohama City University, 1-7-29, Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan
| | - Masahiro Kinoshita
- Institute of Advanced Energy, Kyoto University, Uji, Kyoto 611-0011, Japan
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86
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Seifert U. Efficiency of autonomous soft nanomachines at maximum power. PHYSICAL REVIEW LETTERS 2011; 106:020601. [PMID: 21405215 DOI: 10.1103/physrevlett.106.020601] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2010] [Indexed: 05/07/2023]
Abstract
We consider nanosized artificial or biological machines working in steady state enforced by imposing nonequilibrium concentrations of solutes or by applying external forces, torques, or electric fields. For unicyclic and strongly coupled multicyclic machines, efficiency at maximum power is not bounded by the linear response value 1/2. For strong driving, it can even approach the thermodynamic limit 1. Quite generally, such machines fall into three different classes characterized, respectively, as "strong and efficient," "strong and inefficient," and "balanced." For weakly coupled multicyclic machines, efficiency at maximum power has lost any universality even in the linear response regime.
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Affiliation(s)
- Udo Seifert
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
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