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Catalytic strategies of the non-heme iron dependent oxygenases and their roles in plant biology. Curr Opin Chem Biol 2016; 31:126-35. [PMID: 27015291 PMCID: PMC4879150 DOI: 10.1016/j.cbpa.2016.02.017] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Revised: 02/25/2016] [Accepted: 02/26/2016] [Indexed: 12/18/2022]
Abstract
Current evidence for iron-oxo reactive intermediates is reviewed. In crystallo intermediates detected in a native extradiol dioxygenase reaction. Carotenoid cleavage dioxygenases catalyse strigolactone biosynthesis. Identification of plant cysteine oxidases involved in the plant hypoxic response. Applications of enzyme manipulation to plant biology and agriculture are discussed.
Non-heme iron-dependent oxygenases catalyse the incorporation of O2 into a wide range of biological molecules and use diverse strategies to activate their substrates. Recent kinetic studies, including in crystallo, have provided experimental support for some of the intermediates used by different subclasses of this enzyme family. Plant non-heme iron-dependent oxygenases have diverse and important biological roles, including in growth signalling, stress responses and secondary metabolism. Recently identified roles include in strigolactone biosynthesis, O-demethylation in morphine biosynthesis and regulating the stability of hypoxia-responsive transcription factors. We discuss current structural and mechanistic understanding of plant non-heme iron oxygenases, and how their chemical/genetic manipulation could have agricultural benefit, for example, for improved yield, stress tolerance or herbicide development.
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Romdhane S, Devers-Lamrani M, Martin-Laurent F, Calvayrac C, Rocaboy-Faquet E, Riboul D, Cooper JF, Barthelmebs L. Isolation and characterization of Bradyrhizobium sp. SR1 degrading two β-triketone herbicides. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2016; 23:4138-4148. [PMID: 25903192 DOI: 10.1007/s11356-015-4544-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2015] [Accepted: 04/13/2015] [Indexed: 06/04/2023]
Abstract
In this study, a bacterial strain able to use sulcotrione, a β-triketone herbicide, as sole source of carbon and energy was isolated from soil samples previously treated with this herbicide. Phylogenetic study based on16S rRNA gene sequence showed that the isolate has 100 % of similarity with several Bradyrhizobium and was accordingly designated as Bradyrhizobium sp. SR1. Plasmid profiling revealed the presence of a large plasmid (>50 kb) in SR1 not cured under nonselective conditions. Its transfer to Escherichia coli by electroporation failed to induce β-triketone degrading capacity, suggesting that degrading genes possibly located on this plasmid cannot be expressed in E. coli or that they are not plasmid borne. The evaluation of the SR1 ability to degrade various synthetic (mesotrione and tembotrione) and natural (leptospermone) triketones showed that this strain was also able to degrade mesotrione. Although SR1 was able to entirely dissipate both herbicides, degradation rate of sulcotrione was ten times higher than that of mesotrione, showing a greater affinity of degrading-enzyme system to sulcotrione. Degradation pathway of sulcotrione involved the formation of 2-chloro-4-mesylbenzoic acid (CMBA), previously identified in sulcotrione degradation, and of a new metabolite identified as hydroxy-sulcotrione. Mesotrione degradation pathway leads to the accumulation of 4-methylsulfonyl-2-nitrobenzoic acid (MNBA) and 2-amino-4 methylsulfonylbenzoic acid (AMBA), two well-known metabolites of this herbicide. Along with the dissipation of β-triketones, one could observe the decrease in 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibition, indicating that toxicity was due to parent molecules, and not to the formed metabolites. This is the first report of the isolation of bacterial strain able to transform two β-triketones.
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Affiliation(s)
- Sana Romdhane
- Biocapteurs Analyses Environnement (BAE), University of Perpignan Via Domitia, 66860, Perpignan, France
- Laboratoire de Chimie des Biomolécules et de l'Environnement-CRIOBE-USR 3278 CNRS EPHE, University of Perpignan Via Domitia, 66860, Perpignan, France
- INRA, UMR 1347 Agroécologie, Pole Ecoldur, 17 rue Sully, BP 86510, 21065, Dijon Cedex, France
| | - Marion Devers-Lamrani
- INRA, UMR 1347 Agroécologie, Pole Ecoldur, 17 rue Sully, BP 86510, 21065, Dijon Cedex, France
| | - Fabrice Martin-Laurent
- INRA, UMR 1347 Agroécologie, Pole Ecoldur, 17 rue Sully, BP 86510, 21065, Dijon Cedex, France
| | - Christophe Calvayrac
- Laboratoire de Chimie des Biomolécules et de l'Environnement-CRIOBE-USR 3278 CNRS EPHE, University of Perpignan Via Domitia, 66860, Perpignan, France
| | - Emilie Rocaboy-Faquet
- Biocapteurs Analyses Environnement (BAE), University of Perpignan Via Domitia, 66860, Perpignan, France
| | - David Riboul
- INPT, ENSIACET, Université de Toulouse, 31432, Toulouse, France
- Laboratoire de Génie Chimique (LGC UMR 5503), CNRS, 4 allée Emile Monso, BP 84234, 31432, Toulouse, France
| | - Jean-François Cooper
- Laboratoire de Chimie des Biomolécules et de l'Environnement-CRIOBE-USR 3278 CNRS EPHE, University of Perpignan Via Domitia, 66860, Perpignan, France
| | - Lise Barthelmebs
- Biocapteurs Analyses Environnement (BAE), University of Perpignan Via Domitia, 66860, Perpignan, France.
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Affiliation(s)
- Robert Edwards
- School of Agriculture, Food and Rural Development Newcastle University, Newcastle NE1 7RU United Kingdom
| | - Matthew Hannah
- Bayer CropScience NV, Innovation Center-Trait Discovery 9052 Ghent, Belgium
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