Unravelling interspecies interactions across heterogeneities in complex biofilm communities

More than words: the chemistry behind the interactions in the plant holobiont

Plants and microbes have evolved sophisticated ways to communicate and coexist. The simplest interactions that occur in plant-associated habitats, i.e., those involved in disease detection, depend on the production of microbial pathogenic and virulence factors and the host's evolved immunological response. In contrast, microbes can also be beneficial for their host plants in a number of ways, including fighting pathogens and promoting plant growth. In order to clarify the mechanisms directly involved in these various plant-microbe interactions, we must still deepen our understanding of how these interkingdom communication systems, which are constantly modulated by resident microbial activity, are established and, most importantly, how their effects can span physically separated plant compartments. Efforts in this direction have revealed a complex and interconnected network of molecules and associated metabolic pathways that modulate plant-microbe and microbe-microbe communication pathways to regulate diverse ecological responses. Once sufficiently understood, these pathways will be biotechnologically exploitable, for example, in the use of beneficial microbes in sustainable agriculture. The aim of this review is to present the latest findings on the dazzlingly diverse arsenal of molecules that efficiently mediate specific microbe-microbe and microbe-plant communication pathways during plant development and on different plant organs.

Antibiotic susceptibility of cystic fibrosis lung microbiome members in a multispecies biofilm

The lungs of cystic fibrosis (CF) patients are often chronically colonized by multiple microbial species that can form biofilms, including the major CF pathogen Pseudomonas aeruginosa. Herewith, lower microbial diversity in CF airways is typically associated with worse health outcomes. In an attempt to treat CF lung infections patients are frequently exposed to antibiotics, which may affect microbial diversity. This study aimed at understanding if common antibiotics that target P. aeruginosa influence microbial diversity. To this end, a microaerophilic multispecies biofilm model of frequently co-isolated members of the CF lung microbiome (Pseudomonas aeruginosa, Staphylococcus aureus, Streptococcus anginosus, Achromobacter xylosoxidans, Rothia mucilaginosa, and Gemella haemolysans) was exposed to antipseudomonal antibiotics. We found that antibiotics that affected several dominant species (i.e. ceftazidime, tobramycin) resulted in higher species evenness compared to colistin, which is only active against P. aeruginosa. Furthermore, susceptibility of individual species in the multispecies biofilm following antibiotic treatment was compared to that of the respective single-species biofilms, showing no differences. Adding three anaerobic species (Prevotella melaninogenica, Veillonella parvula, and Fusobacterium nucleatum) to the multispecies biofilm did not influence antibiotic susceptibility. In conclusion, our study demonstrates antibiotic-dependent effects on microbial community diversity of multispecies biofilms comprised of CF microbiome members.

Biofilm formation potential and chlorine resistance of typical bacteria isolated from drinking water distribution systems

Biofilms are the main carrier of microbial communities throughout drinking water distribution systems (DWDSs), and strongly affect the safety of drinking water. Understanding biofilm formation potential and chlorine resistance is necessary for exploring future disinfection strategies and preventing water-borne diseases. This study investigated biofilm formation of five bacterial strains isolated from a simulated DWDS at different incubation times (24 h, 48 h, and 72 h), then evaluated chlorine resistance of 72 h incubated biofilms under chlorine concentrations of 0.3, 0.6, 1, 2, 4, and 10 mg L⁻¹. All five bacterial strains had biofilm formation potential when incubated for 72 h. The biofilm formation potential of Acinetobacter sp. was stronger than that of Bacillus cereus, Microbacterium sp. and Sphingomonas sp. were moderate, and that of Acidovorax sp. was weak. In contrast, the order of chlorine resistance was Bacillus sp. > Sphingomonas sp. > Microbacterium sp. > Acidovorax sp. > Acinetobacter sp. Thus, the chlorine resistance of a single-species biofilm has little relation with the biofilm formation potential. The biofilm biomass is not a major factor affecting chlorine resistance. Moreover, the chlorine resistance of a single-species biofilm is highly related to the physiological state of bacterial cells, such as their ability to form spores or secrete extracellular polymeric substances, which could reduce the sensitivity of the single-species biofilm to a disinfectant or otherwise protect the biofilm.

Biofilms are the main carrier of microbial communities throughout drinking water distribution systems (DWDSs), and strongly affect the safety of drinking water.