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For: Inagaki F, Tsunogai U, Suzuki M, Kosaka A, Machiyama H, Takai K, Nunoura T, Nealson KH, Horikoshi K. Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes. Appl Environ Microbiol 2005;70:7445-55. [PMID: 15574947 PMCID: PMC535202 DOI: 10.1128/aem.70.12.7445-7455.2004] [Citation(s) in RCA: 106] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
51
Jensen S, Neufeld JD, Birkeland NK, Hovland M, Murrell JC. Methane assimilation and trophic interactions with marine Methylomicrobium in deep-water coral reef sediment off the coast of Norway. FEMS Microbiol Ecol 2008;66:320-30. [PMID: 18811651 DOI: 10.1111/j.1574-6941.2008.00575.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]  Open
52
Teske A, Biddle JF. Analysis of Deep Subsurface Microbial Communities by Functional Genes andGenomics. MODERN APPROACHES IN SOLID EARTH SCIENCES 2008. [DOI: 10.1007/978-1-4020-8306-8_5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
53
Spatial Distribution of the Subseafloor Life: Diversity and Biogeography. MODERN APPROACHES IN SOLID EARTH SCIENCES 2008. [DOI: 10.1007/978-1-4020-8306-8_4] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
54
Methylotrophy in freshwater Beggiatoa alba strains. Appl Environ Microbiol 2008;74:5575-8. [PMID: 18621874 DOI: 10.1128/aem.00379-08] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
55
Planktonic and sediment-associated aerobic methanotrophs in two seep systems along the North American margin. Appl Environ Microbiol 2008;74:3985-95. [PMID: 18487407 DOI: 10.1128/aem.00069-08] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
56
Park SJ, Park BJ, Rhee SK. Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments. Extremophiles 2008;12:605-15. [PMID: 18465082 DOI: 10.1007/s00792-008-0165-7] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2008] [Accepted: 04/07/2008] [Indexed: 11/27/2022]
57
Nunoura T, Oida H, Miyazaki J, Miyashita A, Imachi H, Takai K. Quantification of mcrA by fluorescent PCR in methanogenic and methanotrophic microbial communities. FEMS Microbiol Ecol 2008;64:240-7. [PMID: 18318714 DOI: 10.1111/j.1574-6941.2008.00451.x] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
58
Thauer RK, Shima S. Methane as fuel for anaerobic microorganisms. Ann N Y Acad Sci 2007;1125:158-70. [PMID: 18096853 DOI: 10.1196/annals.1419.000] [Citation(s) in RCA: 160] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
59
Hua NP, Kanekiyo A, Fujikura K, Yasuda H, Naganuma T. Halobacillus profundi sp. nov. and Halobacillus kuroshimensis sp. nov., moderately halophilic bacteria isolated from a deep-sea methane cold seep. Int J Syst Evol Microbiol 2007;57:1243-1249. [PMID: 17551037 DOI: 10.1099/ijs.0.64817-0] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
60
Duperron S, Sibuet M, MacGregor BJ, Kuypers MMM, Fisher CR, Dubilier N. Diversity, relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus mussel species from cold seeps in the Gulf of Mexico. Environ Microbiol 2007;9:1423-38. [PMID: 17504480 DOI: 10.1111/j.1462-2920.2007.01259.x] [Citation(s) in RCA: 119] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
61
Lösekann T, Knittel K, Nadalig T, Fuchs B, Niemann H, Boetius A, Amann R. Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano, Barents Sea. Appl Environ Microbiol 2007;73:3348-62. [PMID: 17369343 PMCID: PMC1907091 DOI: 10.1128/aem.00016-07] [Citation(s) in RCA: 301] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
62
Lloyd KG, Lapham L, Teske A. An anaerobic methane-oxidizing community of ANME-1b archaea in hypersaline Gulf of Mexico sediments. Appl Environ Microbiol 2006;72:7218-30. [PMID: 16980428 PMCID: PMC1636178 DOI: 10.1128/aem.00886-06] [Citation(s) in RCA: 186] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2006] [Accepted: 09/01/2006] [Indexed: 11/20/2022]  Open
63
Juottonen H, Galand PE, Yrjälä K. Detection of methanogenic Archaea in peat: comparison of PCR primers targeting the mcrA gene. Res Microbiol 2006;157:914-21. [PMID: 17070673 DOI: 10.1016/j.resmic.2006.08.006] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2006] [Revised: 07/21/2006] [Accepted: 08/29/2006] [Indexed: 10/24/2022]
64
Nunoura T, Oida H, Toki T, Ashi J, Takai K, Horikoshi K. Quantification of mcrA by quantitative fluorescent PCR in sediments from methane seep of the Nankai Trough. FEMS Microbiol Ecol 2006;57:149-57. [PMID: 16819958 DOI: 10.1111/j.1574-6941.2006.00101.x] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]  Open
65
Nealson K. Lakes of liquid CO2 in the deep sea. Proc Natl Acad Sci U S A 2006;103:13903-4. [PMID: 16971489 PMCID: PMC1599885 DOI: 10.1073/pnas.0606709103] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
66
Inagaki F, Kuypers MMM, Tsunogai U, Ishibashi JI, Nakamura KI, Treude T, Ohkubo S, Nakaseama M, Gena K, Chiba H, Hirayama H, Nunoura T, Takai K, Jørgensen BB, Horikoshi K, Boetius A. Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system. Proc Natl Acad Sci U S A 2006;103:14164-9. [PMID: 16959888 PMCID: PMC1599929 DOI: 10.1073/pnas.0606083103] [Citation(s) in RCA: 127] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
67
Coleman NV, Bui NB, Holmes AJ. Soluble di-iron monooxygenase gene diversity in soils, sediments and ethene enrichments. Environ Microbiol 2006;8:1228-39. [PMID: 16817931 DOI: 10.1111/j.1462-2920.2006.01015.x] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
68
Yan T, Ye Q, Zhou J, Zhang CL. Diversity of functional genes for methanotrophs in sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico. FEMS Microbiol Ecol 2006;57:251-9. [PMID: 16867143 DOI: 10.1111/j.1574-6941.2006.00122.x] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]  Open
69
Eller G, Deines P, Grey J, Richnow HH, Krüger M. Methane cycling in lake sediments and its influence on chironomid larval delta13C. FEMS Microbiol Ecol 2006;54:339-50. [PMID: 16332332 DOI: 10.1016/j.femsec.2005.04.006] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2005] [Revised: 04/19/2005] [Accepted: 04/20/2005] [Indexed: 11/29/2022]  Open
70
Alain K, Holler T, Musat F, Elvert M, Treude T, Krüger M. Microbiological investigation of methane- and hydrocarbon-discharging mud volcanoes in the Carpathian Mountains, Romania. Environ Microbiol 2006;8:574-90. [PMID: 16584470 DOI: 10.1111/j.1462-2920.2005.00922.x] [Citation(s) in RCA: 114] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
71
Arakawa S, Sato T, Sato R, Zhang J, Gamo T, Tsunogai U, Hirota A, Yoshida Y, Usami R, Inagaki F, Kato C. Molecular phylogenetic and chemical analyses of the microbial mats in deep-sea cold seep sediments at the northeastern Japan Sea. Extremophiles 2006;10:311-9. [PMID: 16642262 DOI: 10.1007/s00792-005-0501-0] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2005] [Accepted: 11/23/2005] [Indexed: 10/24/2022]
72
Inagaki F, Nunoura T, Nakagawa S, Teske A, Lever M, Lauer A, Suzuki M, Takai K, Delwiche M, Colwell FS, Nealson KH, Horikoshi K, D'Hondt S, Jørgensen BB. Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proc Natl Acad Sci U S A 2006;103:2815-20. [PMID: 16477011 PMCID: PMC1413818 DOI: 10.1073/pnas.0511033103] [Citation(s) in RCA: 338] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
73
Reed AJ, Lutz RA, Vetriani C. Vertical distribution and diversity of bacteria and archaea in sulfide and methane-rich cold seep sediments located at the base of the Florida Escarpment. Extremophiles 2006;10:199-211. [PMID: 16465452 DOI: 10.1007/s00792-005-0488-6] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2005] [Accepted: 10/26/2005] [Indexed: 11/30/2022]
74
Takishita K, Tsuchiya M, Reimer JD, Maruyama T. Molecular evidence demonstrating the basidiomycetous fungus Cryptococcus curvatus is the dominant microbial eukaryote in sediment at the Kuroshima Knoll methane seep. Extremophiles 2005;10:165-9. [PMID: 16341819 DOI: 10.1007/s00792-005-0495-7] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2005] [Accepted: 11/10/2005] [Indexed: 10/25/2022]
75
Shima S, Thauer RK. Methyl-coenzyme M reductase and the anaerobic oxidation of methane in methanotrophic Archaea. Curr Opin Microbiol 2005;8:643-8. [PMID: 16242993 DOI: 10.1016/j.mib.2005.10.002] [Citation(s) in RCA: 133] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2005] [Accepted: 10/06/2005] [Indexed: 11/18/2022]
76
Gainutdinova EA, Eshinimaev BT, Tsyrenzhapova IS, Dagurova OP, Suzina NE, Khmelenina VN, Namsaraev BB, Trotsenko YA. Aerobic Methanotrophic Communities in the Bottom Sediments of Lake Baikal. Microbiology (Reading) 2005. [DOI: 10.1007/s11021-005-0093-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
77
Inagaki F, Okada H, Tsapin AI, Nealson KH. Microbial survival: the paleome: a sedimentary genetic record of past microbial communities. ASTROBIOLOGY 2005;5:141-153. [PMID: 15815165 DOI: 10.1089/ast.2005.5.141] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
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