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For: Yutin N, Colson P, Raoult D, Koonin EV. Mimiviridae: clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family. Virol J 2013;10:106. [PMID: 23557328 PMCID: PMC3620924 DOI: 10.1186/1743-422x-10-106] [Citation(s) in RCA: 87] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2013] [Accepted: 03/27/2013] [Indexed: 12/01/2022]  Open
Number Cited by Other Article(s)
51
Zhang W, Zhou J, Liu T, Yu Y, Pan Y, Yan S, Wang Y. Four novel algal virus genomes discovered from Yellowstone Lake metagenomes. Sci Rep 2015;5:15131. [PMID: 26459929 PMCID: PMC4602308 DOI: 10.1038/srep15131] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2015] [Accepted: 09/17/2015] [Indexed: 11/09/2022]  Open
52
Krupovic M, Kuhn JH, Fischer MG. A classification system for virophages and satellite viruses. Arch Virol 2015;161:233-47. [PMID: 26446887 DOI: 10.1007/s00705-015-2622-9] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2015] [Accepted: 09/21/2015] [Indexed: 11/28/2022]
53
Faustovirus, an asfarvirus-related new lineage of giant viruses infecting amoebae. J Virol 2015;89:6585-94. [PMID: 25878099 DOI: 10.1128/jvi.00115-15] [Citation(s) in RCA: 154] [Impact Index Per Article: 17.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
54
Assis FL, Bajrai L, Abrahao JS, Kroon EG, Dornas FP, Andrade KR, Boratto PVM, Pilotto MR, Robert C, Benamar S, Scola BL, Colson P. Pan-Genome Analysis of Brazilian Lineage A Amoebal Mimiviruses. Viruses 2015;7:3483-99. [PMID: 26131958 PMCID: PMC4517111 DOI: 10.3390/v7072782] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2015] [Revised: 06/15/2015] [Accepted: 06/18/2015] [Indexed: 12/03/2022]  Open
55
Filée J. Genomic comparison of closely related Giant Viruses supports an accordion-like model of evolution. Front Microbiol 2015;6:593. [PMID: 26136734 PMCID: PMC4468942 DOI: 10.3389/fmicb.2015.00593] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2015] [Accepted: 05/29/2015] [Indexed: 01/16/2023]  Open
56
Durzyńska J. Giant viruses: enfants terribles in the microbal world. Future Virol 2015. [DOI: 10.2217/fvl.15.27] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
57
Sharma V, Colson P, Chabrol O, Scheid P, Pontarotti P, Raoult D. Welcome to pandoraviruses at the 'Fourth TRUC' club. Front Microbiol 2015;6:423. [PMID: 26042093 PMCID: PMC4435241 DOI: 10.3389/fmicb.2015.00423] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2015] [Accepted: 04/21/2015] [Indexed: 01/21/2023]  Open
58
Yutin N, Kapitonov VV, Koonin EV. A new family of hybrid virophages from an animal gut metagenome. Biol Direct 2015;10:19. [PMID: 25909276 PMCID: PMC4409740 DOI: 10.1186/s13062-015-0054-9] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2015] [Accepted: 04/16/2015] [Indexed: 11/10/2022]  Open
59
Virus world as an evolutionary network of viruses and capsidless selfish elements. Microbiol Mol Biol Rev 2015;78:278-303. [PMID: 24847023 DOI: 10.1128/mmbr.00049-13] [Citation(s) in RCA: 160] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
60
Koonin EV, Krupovic M, Yutin N. Evolution of double-stranded DNA viruses of eukaryotes: from bacteriophages to transposons to giant viruses. Ann N Y Acad Sci 2015;1341:10-24. [PMID: 25727355 PMCID: PMC4405056 DOI: 10.1111/nyas.12728] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
61
Johannessen TV, Bratbak G, Larsen A, Ogata H, Egge ES, Edvardsen B, Eikrem W, Sandaa RA. Characterisation of three novel giant viruses reveals huge diversity among viruses infecting Prymnesiales (Haptophyta). Virology 2015;476:180-188. [DOI: 10.1016/j.virol.2014.12.014] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Revised: 11/13/2014] [Accepted: 12/08/2014] [Indexed: 01/05/2023]
62
Coelho J, Martins C, Ferreira F, Leitão A. African swine fever virus ORF P1192R codes for a functional type II DNA topoisomerase. Virology 2014;474:82-93. [PMID: 25463606 DOI: 10.1016/j.virol.2014.10.034] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2014] [Revised: 08/20/2014] [Accepted: 10/20/2014] [Indexed: 10/24/2022]
63
Forterre P, Krupovic M, Prangishvili D. Cellular domains and viral lineages. Trends Microbiol 2014;22:554-8. [PMID: 25129822 DOI: 10.1016/j.tim.2014.07.004] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2014] [Revised: 07/09/2014] [Accepted: 07/16/2014] [Indexed: 11/25/2022]
64
Aherfi S, La Scola B, Pagnier I, Raoult D, Colson P. The expanding family Marseilleviridae. Virology 2014;466-467:27-37. [PMID: 25104553 DOI: 10.1016/j.virol.2014.07.014] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2014] [Revised: 06/24/2014] [Accepted: 07/07/2014] [Indexed: 11/25/2022]
65
Yutin N, Wolf YI, Koonin EV. Origin of giant viruses from smaller DNA viruses not from a fourth domain of cellular life. Virology 2014;466-467:38-52. [PMID: 25042053 DOI: 10.1016/j.virol.2014.06.032] [Citation(s) in RCA: 124] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2014] [Revised: 06/14/2014] [Accepted: 06/21/2014] [Indexed: 11/27/2022]
66
Moniruzzaman M, LeCleir GR, Brown CM, Gobler CJ, Bidle KD, Wilson WH, Wilhelm SW. Genome of brown tide virus (AaV), the little giant of the Megaviridae, elucidates NCLDV genome expansion and host-virus coevolution. Virology 2014;466-467:60-70. [PMID: 25035289 DOI: 10.1016/j.virol.2014.06.031] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2014] [Revised: 06/19/2014] [Accepted: 06/21/2014] [Indexed: 10/25/2022]
67
Filée J. Multiple occurrences of giant virus core genes acquired by eukaryotic genomes: the visible part of the iceberg? Virology 2014;466-467:53-9. [PMID: 24998348 DOI: 10.1016/j.virol.2014.06.004] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2014] [Revised: 06/03/2014] [Accepted: 06/04/2014] [Indexed: 12/18/2022]
68
Acanthamoeba polyphaga mimivirus and other giant viruses: an open field to outstanding discoveries. Virol J 2014;11:120. [PMID: 24976356 PMCID: PMC4083134 DOI: 10.1186/1743-422x-11-120] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2014] [Accepted: 06/16/2014] [Indexed: 12/30/2022]  Open
69
Sharma V, Colson P, Giorgi R, Pontarotti P, Raoult D. DNA-dependent RNA polymerase detects hidden giant viruses in published databanks. Genome Biol Evol 2014;6:1603-10. [PMID: 24929085 PMCID: PMC4122926 DOI: 10.1093/gbe/evu128] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
70
Shapiro JA. Physiology of the read-write genome. J Physiol 2014;592:2319-41. [PMID: 24882816 PMCID: PMC4048091 DOI: 10.1113/jphysiol.2014.271130] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2014] [Accepted: 03/09/2014] [Indexed: 12/13/2022]  Open
71
Shapiro JA. Constraint and opportunity in genome innovation. RNA Biol 2014;11:186-96. [PMID: 24572460 PMCID: PMC4008547 DOI: 10.4161/rna.27506] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]  Open
72
Yoosuf N, Pagnier I, Fournous G, Robert C, Raoult D, La Scola B, Colson P. Draft genome sequences of Terra1 and Terra2 viruses, new members of the family Mimiviridae isolated from soil. Virology 2014;452-453:125-32. [PMID: 24606689 DOI: 10.1016/j.virol.2013.12.032] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Revised: 09/30/2013] [Accepted: 12/21/2013] [Indexed: 11/26/2022]
73
Martínez Martínez J, Swan BK, Wilson WH. Marine viruses, a genetic reservoir revealed by targeted viromics. ISME JOURNAL 2013;8:1079-88. [PMID: 24304671 DOI: 10.1038/ismej.2013.214] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2013] [Revised: 10/01/2013] [Accepted: 10/31/2013] [Indexed: 11/09/2022]
74
Yoosuf N, Pagnier I, Fournous G, Robert C, La Scola B, Raoult D, Colson P. Complete genome sequence of Courdo11 virus, a member of the family Mimiviridae. Virus Genes 2013;48:218-23. [PMID: 24293219 DOI: 10.1007/s11262-013-1016-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2013] [Accepted: 11/13/2013] [Indexed: 10/26/2022]
75
Redrejo-Rodríguez M, Salas ML. Repair of base damage and genome maintenance in the nucleo-cytoplasmic large DNA viruses. Virus Res 2013;179:12-25. [PMID: 24184318 DOI: 10.1016/j.virusres.2013.10.017] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2013] [Revised: 10/21/2013] [Accepted: 10/21/2013] [Indexed: 11/27/2022]
76
Yutin N, Koonin EV. Pandoraviruses are highly derived phycodnaviruses. Biol Direct 2013;8:25. [PMID: 24148757 PMCID: PMC3924356 DOI: 10.1186/1745-6150-8-25] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2013] [Accepted: 10/16/2013] [Indexed: 12/12/2022]  Open
77
Colson P, Fournous G, Diene SM, Raoult D. Codon usage, amino acid usage, transfer RNA and amino-acyl-tRNA synthetases in Mimiviruses. Intervirology 2013;56:364-75. [PMID: 24157883 DOI: 10.1159/000354557] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
78
Ngounga T, Pagnier I, Reteno DGI, Raoult D, La Scola B, Colson P. Real-time PCR systems targeting giant viruses of amoebae and their virophages. Intervirology 2013;56:413-23. [PMID: 24157887 DOI: 10.1159/000354563] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
79
Colson P, La Scola B, Raoult D. Giant viruses of amoebae as potential human pathogens. Intervirology 2013;56:376-85. [PMID: 24157884 DOI: 10.1159/000354558] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
80
Piacente F, Bernardi C, Marin M, Blanc G, Abergel C, Tonetti MG. Characterization of a UDP-N-acetylglucosamine biosynthetic pathway encoded by the giant DNA virus Mimivirus. Glycobiology 2013;24:51-61. [PMID: 24107487 DOI: 10.1093/glycob/cwt089] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
81
Koonin EV. A flea has smaller fleas that on him prey: giant viruses, their parasites and evolutionary networks. Future Virol 2013. [DOI: 10.2217/fvl.13.79] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
82
Koonin EV, Dolja VV. A virocentric perspective on the evolution of life. Curr Opin Virol 2013;3:546-57. [PMID: 23850169 PMCID: PMC4326007 DOI: 10.1016/j.coviro.2013.06.008] [Citation(s) in RCA: 147] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2013] [Revised: 06/12/2013] [Accepted: 06/13/2013] [Indexed: 01/12/2023]
83
Suárez C, Welsch S, Chlanda P, Hagen W, Hoppe S, Kolovou A, Pagnier I, Raoult D, Krijnse Locker J. Open membranes are the precursors for assembly of large DNA viruses. Cell Microbiol 2013;15:1883-95. [PMID: 23751082 DOI: 10.1111/cmi.12156] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2013] [Revised: 05/24/2013] [Accepted: 06/02/2013] [Indexed: 12/16/2022]
84
Yutin N, Raoult D, Koonin EV. Virophages, polintons, and transpovirons: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies. Virol J 2013;10:158. [PMID: 23701946 PMCID: PMC3671162 DOI: 10.1186/1743-422x-10-158] [Citation(s) in RCA: 84] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2013] [Accepted: 04/19/2013] [Indexed: 12/25/2022]  Open
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