51
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Arostegui MC, Shero MR, Frank LR, Berquist RM, Braun CD. An enigmatic pelagic fish with internalized red muscle: A future regional endotherm or forever an ectotherm? JOURNAL OF FISH BIOLOGY 2023; 102:1311-1326. [PMID: 36911991 DOI: 10.1111/jfb.15375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Accepted: 03/08/2023] [Indexed: 06/09/2023]
Abstract
Ectothermy and endothermy in extant fishes are defined by distinct integrated suites of characters. Although only ⁓0.1% of fishes are known to have endothermic capacity, recent discoveries suggest that there may still be uncommon pelagic fish species with yet to be discovered endothermic traits. Among the most rarely encountered marine fishes, the louvar Luvarus imperialis is a remarkable example of adaptive evolution as the only extant pelagic species in the order Acanthuriformes (including surgeonfishes, tangs, unicornfishes and Moorish idol). Magnetic resonance imaging and gross necropsy did not yield evidence of cranial or visceral endothermy but revealed a central-posterior distribution of myotomal red muscle that is a mixture of the character states typifying ectotherms (lateral-posterior) and red muscle endotherms (central-anterior). Dissection of a specimen confirmed, and an osteological proxy supported, that L. imperialis has not evolved the vascular rete that is vital to retaining heat in the red muscle. The combination of presumably relying on caudal propulsion while exhibiting internal red muscle without associated retia is unique to L. imperialis among all extant fishes, raising the macroevolutionary question of whether this species - in geologic timescales - will remain an ectotherm or evolve red muscle endothermy.
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Affiliation(s)
- Martin C Arostegui
- Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
| | - Michelle R Shero
- Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
| | - Lawrence R Frank
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, CA, USA
| | - Rachel M Berquist
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, CA, USA
| | - Camrin D Braun
- Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
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52
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Nakamoto M, Sakamoto T. Improvement of the ayu (Plecoglossus altivelis) draft genome using Hi-C sequencing. BMC Res Notes 2023; 16:92. [PMID: 37254197 DOI: 10.1186/s13104-023-06362-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Accepted: 05/19/2023] [Indexed: 06/01/2023] Open
Abstract
OBJECTIVE The ayu or sweetfish Plecoglossus altivelis is ray-finned fish that is widely distributed in East Asia. The genome size of ayu was estimated at approximately 420 Mb. Previously, we reported on ayu draft genome assembly by whole-genome shotgun using Illumina short reads and PacBio long reads; however, the assembly was not to chromosome level. Therefore, to improve the draft genome sequence of ayu to chromosome level, we performed in situ Hi-C sequencing as a source of linkage information. RESULTS The ayu genome assembly yielded 28 large scaffolds that corresponded to the karyotype of ayu (n = 28). The resulting ayu genome assembly has a N50 scaffold length of 17.0 Mb, improved from 4.3 Mb. The high-quality reference genome will be helpful for phylogenetic research on bony fishes and for breeding programs in ayu aquaculture.
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Affiliation(s)
- Masatoshi Nakamoto
- Department of Marine Biosciences, Tokyo University of Marine Science and Technology, Tokyo, 108-8477, Japan
| | - Takashi Sakamoto
- Department of Marine Biosciences, Tokyo University of Marine Science and Technology, Tokyo, 108-8477, Japan.
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53
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Kawaguchi M, Chang WS, Tsuchiya H, Kinoshita N, Miyaji A, Kawahara-Miki R, Tomita K, Sogabe A, Yorifuji M, Kono T, Kaneko T, Yasumasu S. Orphan gene expressed in flame cone cells uniquely found in seahorse epithelium. Cell Tissue Res 2023:10.1007/s00441-023-03779-1. [PMID: 37227506 DOI: 10.1007/s00441-023-03779-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 04/26/2023] [Indexed: 05/26/2023]
Abstract
The seahorse is one of the most unique teleost fishes in its morphology. The body is surrounded by bony plates and spines, and the male fish possess a brooding organ, called the brood pouch, on their tail. The surfaces of the brood pouch and the spines are surrounded by characteristic so-called flame cone cells. Based on our histological observations, flame cone cells are present in the seahorse Hippocampus abdominalis, but not in the barbed pipefish Urocampus nanus or the seaweed pipefish Syngnathus schlegeli, both of which belong to the same family as the seahorse. In the flame cone cells, we observed expression of an "orphan gene" lacking homologs in other lineages. This gene, which we named the proline-glycine rich (pgrich) gene, codes for an amino acid sequence composed of repetitive units. In situ hybridization and immunohistochemical analyses detected pgrich-positive signals from the flame cone cells. Based on a survey of the genome sequences of 15 teleost species, the pgrich gene is only found from some species of Syngnathiformes (namely, the genera Syngnathus and Hippocampus). The amino acid sequence of the seahorse PGrich is somewhat similar to the sequence deduced from the antisense strand of elastin. Furthermore, there are many transposable elements around the pgrich gene. These results suggest that the pgrich gene may have originated from the elastin gene with the involvement of transposable elements and obtained its novel function in the flame cone cells during the evolution of the seahorse.
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Affiliation(s)
- Mari Kawaguchi
- Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, Chiyoda-ku, Tokyo, Japan.
| | - Wen-Shan Chang
- Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, Chiyoda-ku, Tokyo, Japan
| | - Hazuki Tsuchiya
- Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, Chiyoda-ku, Tokyo, Japan
| | - Nana Kinoshita
- Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, Chiyoda-ku, Tokyo, Japan
| | - Akira Miyaji
- Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, Chiyoda-ku, Tokyo, Japan
| | - Ryouka Kawahara-Miki
- Genome Research Center, NODAI Research Institute, Tokyo University of Agriculture, Setagaya-Ku, Tokyo, Japan
| | - Kenji Tomita
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Atsushi Sogabe
- Department of Biology, Faculty of Agriculture and Life Science, Hirosaki University, Bunkyo, Hirosaki, Aomori, 036-8561, Japan
| | - Makiko Yorifuji
- Sesoko Station, Tropical Biosphere Research Center, University of the Ryukyus, Sesoko, Motobu, Okinawa, 905-0227, Japan
- Demonstration Laboratory, Marine Ecology Research Institute, Arahama, Kashiwazaki, Niigata, 945-0017, Japan
| | - Tomohiro Kono
- Genome Research Center, NODAI Research Institute, Tokyo University of Agriculture, Setagaya-Ku, Tokyo, Japan
- Department of Bioscience, Tokyo University of Agriculture, Setagaya-Ku, Tokyo, Japan
| | - Toyoji Kaneko
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Shigeki Yasumasu
- Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, Chiyoda-ku, Tokyo, Japan
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54
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López-Romero FA, Stumpf S, Kamminga P, Böhmer C, Pradel A, Brazeau MD, Kriwet J. Shark mandible evolution reveals patterns of trophic and habitat-mediated diversification. Commun Biol 2023; 6:496. [PMID: 37156994 PMCID: PMC10167336 DOI: 10.1038/s42003-023-04882-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Accepted: 04/27/2023] [Indexed: 05/10/2023] Open
Abstract
Environmental controls of species diversity represent a central research focus in evolutionary biology. In the marine realm, sharks are widely distributed, occupying mainly higher trophic levels and varied dietary preferences, mirrored by several morphological traits and behaviours. Recent comparative phylogenetic studies revealed that sharks present a fairly uneven diversification across habitats, from reefs to deep-water. We show preliminary evidence that morphological diversification (disparity) in the feeding system (mandibles) follows these patterns, and we tested hypotheses linking these patterns to morphological specialisation. We conducted a 3D geometric morphometric analysis and phylogenetic comparative methods on 145 specimens representing 90 extant shark species using computed tomography models. We explored how rates of morphological evolution in the jaw correlate with habitat, size, diet, trophic level, and taxonomic order. Our findings show a relationship between disparity and environment, with higher rates of morphological evolution in reef and deep-water habitats. Deep-water species display highly divergent morphologies compared to other sharks. Strikingly, evolutionary rates of jaw disparity are associated with diversification in deep water, but not in reefs. The environmental heterogeneity of the offshore water column exposes the importance of this parameter as a driver of diversification at least in the early part of clade history.
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Affiliation(s)
- Faviel A López-Romero
- University of Vienna, Faculty of Earth Sciences, Geography and Astronomy, Department of Palaeontology, Evolutionary Morphology Research Group, Josef-Holaubek-Platz 2, 1190, Vienna, Austria.
- University of Vienna, Vienna Doctoral School of Ecology and Evolution (VDSEE), Djerassiplatz 1, 1030, Vienna, Austria.
| | - Sebastian Stumpf
- University of Vienna, Faculty of Earth Sciences, Geography and Astronomy, Department of Palaeontology, Evolutionary Morphology Research Group, Josef-Holaubek-Platz 2, 1190, Vienna, Austria
| | - Pepijn Kamminga
- Naturalis Biodiversity Center, Darwinweg 2, 2333 CR, Leiden, The Netherlands
| | - Christine Böhmer
- MECADEV UMR 7179 CNRS/MNHN, Département Adaptations du Vivant, Muséum National d'Histoire Naturelle, CP 55, 57 rue Cuvier, 75231, Paris, France
- Department für Geo- und Umweltwissenschaften und GeoBio-Center, Ludwig-Maximilians-Universität München, Richard-Wagner-Straße 10, 80333, München, Germany
- Zoologisches Institut, Christian-Albrechts-Universität zu Kiel, Am Botanischen Garten 1-9, 24118, Kiel, Germany
| | - Alan Pradel
- CR2P, Centre de Recherche en Paléontologie - Paris, Muséum National d'Histoire Naturelle-Sorbonne Université-CNRS, CP 38, 57 rue Cuvier, F75231, Paris, Cedex 05, France
| | - Martin D Brazeau
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, SL5 7PY, London, UK
- The Natural History Museum, Cromwell Road, London, SW7 5BD, UK
| | - Jürgen Kriwet
- University of Vienna, Faculty of Earth Sciences, Geography and Astronomy, Department of Palaeontology, Evolutionary Morphology Research Group, Josef-Holaubek-Platz 2, 1190, Vienna, Austria
- University of Vienna, Vienna Doctoral School of Ecology and Evolution (VDSEE), Djerassiplatz 1, 1030, Vienna, Austria
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55
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Janzen FH, Pérez-Rodríguez R, Domínguez-Domínguez O, Hendrickson DA, Sabaj MH, Blouin-Demers G. Phylogenetic relationships of the North American catfishes (Ictaluridae, Siluriformes): Investigating the origins and parallel evolution of the troglobitic species. Mol Phylogenet Evol 2023; 182:107746. [PMID: 36849094 DOI: 10.1016/j.ympev.2023.107746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 02/09/2023] [Accepted: 02/22/2023] [Indexed: 02/27/2023]
Abstract
Insular habitats have played an important role in developing evolutionary theory, including natural selection and island biogeography. Caves are insular habitats that place extreme selective pressures on organisms due to the absence of light and food scarcity. Therefore, cave organisms present an excellent opportunity for studying colonization and speciation in response to the unique abiotic conditions that require extreme adaptations. One vertebrate family, the North American catfishes (Ictaluridae), includes four troglobitic species that inhabit the karst region bordering the western Gulf of Mexico. The phylogenetic relationships of these species have been contentious, and conflicting hypotheses have been proposed to explain their origins. The purpose of our study was to construct a time-calibrated phylogeny of Ictaluridae using first-occurrence fossil data and the largest molecular dataset on the group to date. We test the hypothesis that troglobitic ictalurids have evolved in parallel, thus resulting from repeated cave colonization events. We found that Prietella lundbergi is sister to surface-dwelling Ictalurus and that Prietella phreatophila + Trogloglanis pattersoni are sister to surface-dwelling Ameiurus, suggesting that ictalurids colonized subterranean habitats at least twice in evolutionary history. The sister relationship between Prietella phreatophila and Trogloglanis pattersoni may indicate that these two species diverged from a common ancestor following a subterranean dispersal event between Texas and Coahuila aquifers. We recovered Prietella as a polyphyletic genus and recommend P. lundbergi be removed from this genus. With respect to Ameiurus, we found evidence for a potentially undescribed species sister to A. platycephalus, which warrants further investigation of Atlantic and Gulf slope Ameiurus species. In Ictalurus, we identified shallow divergence between I. dugesii and I. ochoterenai, I. australis and I. mexicanus, and I. furcatus and I. meridionalis, indicating a need to reexamine the validity of each species. Lastly, we propose minor revisions to the intrageneric classification of Noturus including the restriction of subgenus Schilbeodes to N. gyrinus (type species), N. lachneri, N. leptacanthus, and N. nocturnus.
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Affiliation(s)
- Francesco H Janzen
- Department of Biology, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada.
| | | | | | - Dean A Hendrickson
- Biodiversity Center, Texas Natural History Collections, University of Texas at Austin, Austin, TX 78758, United States
| | - Mark H Sabaj
- The Academy of Natural Sciences of Drexel University, Philadelphia, PA 19103, United States
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56
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White LJ, Russell AJ, Pizzey AR, Dasmahapatra KK, Pownall ME. The Presence of Two MyoD Genes in a Subset of Acanthopterygii Fish Is Associated with a Polyserine Insert in MyoD1. J Dev Biol 2023; 11:jdb11020019. [PMID: 37218813 DOI: 10.3390/jdb11020019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 04/20/2023] [Accepted: 04/26/2023] [Indexed: 05/24/2023] Open
Abstract
The MyoD gene was duplicated during the teleost whole genome duplication and, while a second MyoD gene (MyoD2) was subsequently lost from the genomes of some lineages (including zebrafish), many fish lineages (including Alcolapia species) have retained both MyoD paralogues. Here we reveal the expression patterns of the two MyoD genes in Oreochromis (Alcolapia) alcalica using in situ hybridisation. We report our analysis of MyoD1 and MyoD2 protein sequences from 54 teleost species, and show that O. alcalica, along with some other teleosts, include a polyserine repeat between the amino terminal transactivation domains (TAD) and the cysteine-histidine rich region (H/C) in MyoD1. The evolutionary history of MyoD1 and MyoD2 is compared to the presence of this polyserine region using phylogenetics, and its functional relevance is tested using overexpression in a heterologous system to investigate subcellular localisation, stability, and activity of MyoD proteins that include and do not include the polyserine region.
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Affiliation(s)
- Lewis J White
- Biology Department, University of York, York YO10 5DD, UK
| | | | | | | | - Mary E Pownall
- Biology Department, University of York, York YO10 5DD, UK
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57
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Khensuwan S, Sassi FDMC, Moraes RLR, Jantarat S, Seetapan K, Phintong K, Thongnetr W, Kaewsri S, Jumrusthanasan S, Supiwong W, Rab P, Tanomtong A, Liehr T, Cioffi MB. Chromosomes of Asian Cyprinid Fishes: Genomic Differences in Conserved Karyotypes of 'Poropuntiinae' (Teleostei, Cyprinidae). Animals (Basel) 2023; 13:ani13081415. [PMID: 37106978 PMCID: PMC10135121 DOI: 10.3390/ani13081415] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Revised: 04/13/2023] [Accepted: 04/19/2023] [Indexed: 04/29/2023] Open
Abstract
The representatives of cyprinid lineage 'Poropuntiinae' with 16 recognized genera and around 100 species form a significant part of Southeast Asian ichthyofauna. Cytogenetics are valuable when studying fish evolution, especially the dynamics of repetitive DNAs, such as ribosomal DNAs (5S and 18S) and microsatellites, that can vary between species. Here, karyotypes of seven 'poropuntiin' species, namely Cosmochilus harmandi, Cyclocheilichthys apogon, Hypsibarbus malcomi, H. wetmorei, Mystacoleucus chilopterus, M. ectypus, and Puntioplties proctozysron occurring in Thailand were examined using conventional and molecular cytogenetic protocols. Variable numbers of uni- and bi-armed chromosomes indicated widespread chromosome rearrangements with a stable diploid chromosome number (2n) of 50. Examination with fluorescence in situ hybridization using major and minor ribosomal probes showed that Cosmochilus harmandi, Cyclocheilichthys apogon, and Puntioplites proctozystron all had one chromosomal pair with 5S rDNA sites. However, more than two sites were found in Hypsibarbus malcolmi, H. wetmorei, Mystacoleucus chilopterus, and M. ectypus. The number of chromosomes with 18S rDNA sites varied amongst their karyotypes from one to three; additionally, comparative genomic hybridization and microsatellite patterns varied among species. Our results reinforce the trend of chromosomal evolution in cyprinifom fishes, with major chromosomal rearrangements, while conserving their 2n.
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Affiliation(s)
- Sudarat Khensuwan
- Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen 40002, Thailand
| | - Francisco de M C Sassi
- Departamento de Genética e Evolução, Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luiz Km. 235, C.P. 676, São Carlos 13565-905, Brazil
| | - Renata L R Moraes
- Departamento de Genética e Evolução, Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luiz Km. 235, C.P. 676, São Carlos 13565-905, Brazil
| | - Sitthisak Jantarat
- Department of Science, Faculty of Science and Technology, Prince of Songkla University, Pattani 94000, Thailand
| | - Kriengkrai Seetapan
- School of Agriculture and Natural Resources, University of Phayao, Tumbol Maeka, Muang, Phayao 56000, Thailand
| | - Krit Phintong
- Department of Fundamental Science, Faculty of Science and Technology, Surindra Rajabhat University, Muang, Surin 32000, Thailand
| | - Weera Thongnetr
- Division of Biology, Department of Science, Faculty of Science and Technology, Rajamangala University of Technology Krungthep, Bangkok 10120, Thailand
| | - Sarawut Kaewsri
- Program in Biology, Faculty of Science, Buriram Rajabhat University, Muang, Buriram 31000, Thailand
| | - Sarun Jumrusthanasan
- Program in Biology, Faculty of Science, Buriram Rajabhat University, Muang, Buriram 31000, Thailand
| | - Weerayuth Supiwong
- Faculty of Applied Science and Engineering, Khon Kaen University, Nong Khai Campus, Muang, Nong Khai 43000, Thailand
| | - Petr Rab
- Laboratory of Fish Genetics, Institute of Animal Physiology and Genetics, Czech Academy of Sciences, Rumburská 89, 277 21 Liběchov, Czech Republic
| | - Alongklod Tanomtong
- Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen 40002, Thailand
| | - Thomas Liehr
- Institute of Human Genetics, University Hospital Jena, 07747 Jena, Germany
| | - Marcelo B Cioffi
- Departamento de Genética e Evolução, Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luiz Km. 235, C.P. 676, São Carlos 13565-905, Brazil
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58
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Ahnelt H, Macek O, Robitzch V. A new species of Schindleria (Teleostei: Gobiiformes: Gobiidae) from the Red Sea (Saudi Arabia) with a specialized caudal-fin complex. VERTEBRATE ZOOLOGY 2023. [DOI: 10.3897/vz.73.e97515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/09/2023]
Abstract
Species of the gobiid genus Schindleria are among the smallest and fastest reproducing vertebrates of the oceans. We describe a new species, Schindleria qizma, from the Red Sea, Saudi Arabia. It is an extreme example of progenesis, within the already paedomorphic genus, with morphological traits clearly differentiating it from its congeners. Schindleria qizma has a unique, unflexed notochord with a straight urostyle of which the tip is inserted into the hypural cartilage, rather than the typical flexed notochord with an upturned urostyle of the other species of Schindleria. Schindleria qizma belongs to the short dorsal-fin type of Schindleria. It is further characterized by an elongated but relatively deep body; a short dorsal fin originating just slightly anterior to the anal fin (predorsal-fin length 59.4% of SL vs. preanal-fin length 60.2% of SL); a head continuously increasing in depth posteriorly with a straight dorsal profile; a short snout (18.6% of head length); large eyes (34.4% of head length); a short pectoral-radial plate (6.3% of SL); 13 dorsal-fin rays; 11 anal-fin rays; 0–2 procurrent rays (where the last procurrent ray is short, if present); an anal fin with the first anal-fin ray situated opposite the second dorsal-fin ray; toothless oral jaws; females with few (10–11, total) but very large (4.6% of SL) eggs and with a conspicuous urogenital papilla characterized by a wide urogenital opening flanked by two long, bilobed projections; a dorsally pigmented swim-bladder; blackish, iridescent eyes, capped by a silvery layer with irregular rows of black dots or blotches; and no additional external pigmentation on its body, at least in preserved specimens.
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59
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Afifi MAM, Sarhan M, Khalaf-Allah HM, Alabssawy AN, Abbas MMM, Abdel-Hamid F, El-Tabakh MAM. DNA barcoding supports life stages of wrasse fish, Novaculichthys taeniourus (Family Labridae) in the Hurghada Red Sea, Egypt. ZOOL ANZ 2023. [DOI: 10.1016/j.jcz.2023.03.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/08/2023]
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60
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Paschoal F, Couto JV, Pereira FB, Luque JL. A new species of Colobomatus Hesse, 1873 (Copepoda: Philichthyidae) parasitic in the interorbital canals of the Caitipa mojarra Diapterus rhombeus (Cuvier, 1829) (Actinopterygii: Gerreidae) from Sepetiba Bay, southeastern Brazil. Syst Parasitol 2023; 100:111-120. [PMID: 36329377 DOI: 10.1007/s11230-022-10074-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Accepted: 10/20/2022] [Indexed: 11/06/2022]
Abstract
A new species of parasitic copepod, Colobomatus deborae n. sp., belonging to the cyclopoid family Philichthyidae Vogt, 1877, is proposed based on adult female specimens collected from the interorbital canals of the Caitipa mojarra Diapterus rhombeus (Cuvier) (Gerreidae) from Sepetiba Bay, off the State of Rio de Janeiro, southeastern Brazil. The new species closely resembles six species of Colobomatus Hesse, 1873, but differs from these close congeners based on the combination of the following characters: lateral cephalic processes forked basally with sharp tips, midventral cephalic process representing about one third of the length of the laterals, thoracic processes forked and caudal rami with a pair of unequal processes. Together with the new species described in the present study, the philichthyid fauna of Brazil rises to 10 species reported from 14 Brazilian marine fish species. This is also the third report of Colobomatus in a gerreid fish, but the first species found parasitizing the genus Diapterus.
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Affiliation(s)
- Fabiano Paschoal
- Programa de Pós-Graduação em Biodiversidade e Conservação, Departamento de Oceanografia e Limnologia, Universidade Federal do Maranhão, Av. dos Portugueses, 1966, Bacanga, São Luís, MA, 65080-805, Brazil.
| | - João Victor Couto
- Programa de Pós-Graduação em Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antonio Carlos, 6627, Pampulha, Belo Horizonte, MG, 31270-901, Brazil
| | - Felipe Bisaggio Pereira
- Programa de Pós-Graduação em Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antonio Carlos, 6627, Pampulha, Belo Horizonte, MG, 31270-901, Brazil
| | - José Luis Luque
- Departamento de Parasitologia Animal, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ, 23897-000, Brazil
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61
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Wilson AB, Whittington CM, Meyer A, Scobell SK, Gauthier ME. Prolactin and the evolution of male pregnancy. Gen Comp Endocrinol 2023; 334:114210. [PMID: 36646326 DOI: 10.1016/j.ygcen.2023.114210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 11/04/2022] [Accepted: 01/11/2023] [Indexed: 01/15/2023]
Abstract
Prolactin (PRL) is a multifunctional hormone of broad physiological importance, and is involved in many aspects of fish reproduction, including the regulation of live birth (viviparity) and both male and female parental care. Previous research suggests that PRL also plays an important reproductive role in syngnathid fishes (seahorses, pipefish and seadragons), a group with a highly derived reproductive strategy, male pregnancy - how the PRL axis has come to be co-opted for male pregnancy remains unclear. We investigated the molecular evolution and expression of the genes for prolactin and its receptor (PRLR) in an evolutionarily diverse sampling of syngnathid fishes to explore how the co-option of PRL for male pregnancy has impacted its evolution, and to clarify whether the PRL axis is also involved in regulating reproductive function in species with more rudimentary forms of male pregnancy. In contrast to the majority of teleost fishes, all syngnathid fishes tested carry single copies of PRL and PRLR that cluster genetically within the PRL1 and PRLRa lineages of teleosts, respectively. PRL1 gene expression in seahorses and pipefish is restricted to the pituitary, while PRLRa is expressed in all tissues, including the brood pouch of species with both rudimentary and complex brooding structures. Pituitary PRL1 expression remains stable throughout pregnancy, but PRLRa expression is specifically upregulated in the male brood pouch during pregnancy, consistent with the higher affinity of pouch tissues for PRL hormone during embryonic incubation. Finally, immunohistochemistry of brood pouch tissues reveals that both PRL1 protein and PRLRa and Na+/K+ ATPase-positive cells line the inner pouch epithelium, suggesting that pituitary-derived PRL1 may be involved in brood pouch osmoregulation during pregnancy. Our data provide a unique molecular perspective on the evolution and expression of prolactin and its receptor during male pregnancy, and provide the foundation for further manipulative experiments exploring the role of PRL in this unique form of reproduction.
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Affiliation(s)
- Anthony B Wilson
- Department of Biology, Brooklyn College, 2900 Bedford Avenue, Brooklyn, NY 11210, United States; The Graduate Center, City University of New York, 365 Fifth Avenue, New York, NY 10016, United States; Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich 8057, Switzerland; Department of Biology, University of Konstanz, Universitätsstrasse 10, 78457, Germany.
| | - Camilla M Whittington
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich 8057, Switzerland; Sydney School of Veterinary Science, University of Sydney, Sydney 2006, Australia; School of Life and Environmental Sciences, University of Sydney, Sydney 2006, Australia
| | - Axel Meyer
- Department of Biology, University of Konstanz, Universitätsstrasse 10, 78457, Germany
| | - Sunny K Scobell
- Department of Biology, Brooklyn College, 2900 Bedford Avenue, Brooklyn, NY 11210, United States
| | - Marie-Emilie Gauthier
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich 8057, Switzerland
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62
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Rodrigues-Oliveira IH, Pasa R, Menegidio FB, Kavalco KF. Characterization of six new complete mitochondrial genomes of Chiasmodontidae (Scombriformes, Percomorpha) and considerations about the phylogenetic relationships of the family. Genomics Inform 2023; 21:e10. [PMID: 37037468 PMCID: PMC10085734 DOI: 10.5808/gi.22041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Accepted: 01/14/2023] [Indexed: 04/03/2023] Open
Abstract
The fishes of the Chiasmodontidae family, known as swallower fishes, are species adapted to live in deep seas. Several studies have shown the proximity of this family to Tetragonuridae and Amarsipidae. However, the phylogenetic position of this clade related to other Pelagiaria groups remains uncertain even when phylogenomic studies are employed. Since the low number of published mitogenomes, our study aimed to assemble six new mitochondrial genomes of Chiasmodontidae from database libraries to expand the discussion regarding the phylogeny of this group within Scombriformes. As expected, the composition and organization of mitogenomes were stable among the analyzed species, although we detected repetitive sequences in the D-loop of species of the genus Kali not seen in Chiasmodon, Dysalotus, and Pseudoscopelus. Our phylogeny incorporating 51 mitogenomes from several families of Scombriformes, including nine chiasmodontids, recovered interfamilial relationships well established in previous studies, including a clade containing Chiasmodontidae, Amarsipidae, and Tetragonuridae. However, phylogenetic relationships between larger clades remain unclear, with disagreements between different phylogenomic studies. We argue that such inconsistencies are not only due to biases and limitations in the data but mainly to complex biological events in the adaptive irradiation of Scombriformes after the Cretaceous-Paleogene extinction event.
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Affiliation(s)
- Igor Henrique Rodrigues-Oliveira
- Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, Brazil
- Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil
- Laboratory of Bioinformatics and Genomics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil
- Corresponding author: E-mail:
| | - Rubens Pasa
- Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil
- Laboratory of Bioinformatics and Genomics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil
| | - Fabiano Bezerra Menegidio
- Technological Research Center, University of Mogi das Cruzes, Mogi das Cruzes 08780-911, Brazil
- Integrated Biotechnology Center, University of Mogi das Cruzes, Mogi das Cruzes 08780-911, Brazil
| | - Karine Frehner Kavalco
- Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil
- Laboratory of Bioinformatics and Genomics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil
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63
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Dichiera AM, De Anda V, Gilmour KM, Baker BJ, Esbaugh AJ. Functional divergence of teleost carbonic anhydrase 4. Comp Biochem Physiol A Mol Integr Physiol 2023; 277:111368. [PMID: 36642322 DOI: 10.1016/j.cbpa.2023.111368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 12/14/2022] [Accepted: 01/10/2023] [Indexed: 01/15/2023]
Abstract
The functional role of membrane-bound carbonic anhydrases (CAs) has been of keen interest in the past decade, and in particular, studies have linked CA in red muscle, heart, and eye to enhanced tissue oxygen extraction in bony fishes (teleosts). However, the number of purported membrane-bound CA isoforms in teleosts, combined with the imperfect system of CA isoform nomenclature, present roadblocks for ascribing physiological functions to particular CA isoforms across different teleost lineages. Here we developed an organizational framework for membrane-bound CAs in teleosts, providing the latest phylogenetic analysis of extant CA4 and CA4-like isoforms. Our data confirm that there are three distinct isoforms of CA4 (a, b, and c) that are conserved across major teleost lineages, with the exception of CA4c gene being lost in salmonids. Tissue distribution analyses suggest CA4a functions in oxygen delivery across teleost lineages, while CA4b may be specialized for renal acid-base balance and ion regulation. This work provides an important foundation for researchers to elucidate the functional significance of CA4 isoforms in fishes.
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Affiliation(s)
- Angelina M Dichiera
- Department of Zoology, The University of British Columbia, Vancouver, BC V6T 1Z4, Canada.
| | - Valerie De Anda
- Marine Science Institute, The University of Texas at Austin, Port Aransas, TX 78373, USA. https://twitter.com/val_deanda
| | | | - Brett J Baker
- Marine Science Institute, The University of Texas at Austin, Port Aransas, TX 78373, USA; Department of Integrative Biology, The University of Texas at Austin, Austin, TX 78712, USA. https://twitter.com/archaeal
| | - Andrew J Esbaugh
- Marine Science Institute, The University of Texas at Austin, Port Aransas, TX 78373, USA
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64
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Musilova Z, Cortesi F. The evolution of the green-light-sensitive visual opsin genes (RH2) in teleost fishes. Vision Res 2023; 206:108204. [PMID: 36868011 DOI: 10.1016/j.visres.2023.108204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2022] [Revised: 01/14/2023] [Accepted: 02/09/2023] [Indexed: 03/05/2023]
Abstract
Vertebrates have four visual cone opsin classes that mediate sensitivity from ultraviolet to red wavelengths of light. The rhodopsin-like 2 (RH2) opsin is sensitive to the central mostly green part of the spectrum. While lost in some terrestrial vertebrates (mammals), the RH2 opsin gene has proliferated during the evolution of teleost fishes. Here, we investigated the genomes of 132 extant teleosts and found between zero and eight RH2 gene copies per species. The RH2 gene shows a dynamic evolutionary history with repeated gene duplications, gene losses, and gene conversions affecting entire orders, families, and species. At least four ancestral duplications provided the substrate for today's RH2 diversity, with duplications occurring in the common ancestors of Clupeocephala (twice), Neoteleostei, and likely Acanthopterygii as well. Despite these evolutionary dynamics, we identified conserved RH2 synteny in two main gene clusters; the slc6A13/synpr cluster is highly conserved within Percomorpha and also present across most teleosts, including Otomorpha, Euteleostei and in parts in tarpons (Elopomorpha), and the mutSH5 cluster, which is specific for Otomorpha. When comparing the number of visual opsin genes (SWS1, SWS2, RH2, LWS, and total cone opsins) with habitat depth, we found that deeper-dwelling species had less (or none) long-wavelength-sensitive opsins. Using retinal/eye transcriptomes in a phylogenetic representative dataset of 32 species, we show that if present in the genome, RH2 is expressed in most fishes except for some species within the tarpons, characins, and gobies (and Osteoglossomorpha and some other characin species have lost the gene). Those species instead express a green-shifted long-wavelength-sensitive LWS opsin. Our study applies modern genomic and transcriptomic tools within a comparative framework to elucidate the evolutionary history of the visual sensory system in teleost fishes.
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Affiliation(s)
- Zuzana Musilova
- Department of Zoology, Faculty of Science, Charles University, Vinicna, 7, 12844 Prague, Czech Republic.
| | - Fabio Cortesi
- School of Biological Sciences and Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia.
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65
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Fajardo D, Saint Jean R, Lyons PJ. Acquisition of new function through gene duplication in the metallocarboxypeptidase family. Sci Rep 2023; 13:2512. [PMID: 36781897 PMCID: PMC9925722 DOI: 10.1038/s41598-023-29800-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Accepted: 02/10/2023] [Indexed: 02/15/2023] Open
Abstract
Gene duplication is a key first step in the process of expanding the functionality of a multigene family. In order to better understand the process of gene duplication and its role in the formation of new enzymes, we investigated recent duplication events in the M14 family of proteolytic enzymes. Within vertebrates, four of 23 M14 genes were frequently found in duplicate form. While AEBP1, CPXM1, and CPZ genes were duplicated once through a large-scale, likely whole-genome duplication event, the CPO gene underwent many duplication events within fish and Xenopus lineages. Bioinformatic analyses of enzyme specificity and conservation suggested a greater amount of neofunctionalization and purifying selection in CPO paralogs compared with other CPA/B enzymes. To examine the functional consequences of evolutionary changes on CPO paralogs, the four CPO paralogs from Xenopus tropicalis were expressed in Sf9 and HEK293T cells. Immunocytochemistry showed subcellular distribution of Xenopus CPO paralogs to be similar to that of human CPO. Upon activation with trypsin, the enzymes demonstrated differential activity against three substrates, suggesting an acquisition of new function following duplication and subsequent mutagenesis. Characteristics such as gene size and enzyme activation mechanisms are possible contributors to the evolutionary capacity of the CPO gene.
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Affiliation(s)
- Daniel Fajardo
- Department of Biology, Andrews University, Berrien Springs, MI, 49104, USA
| | - Ritchie Saint Jean
- Department of Biology, Andrews University, Berrien Springs, MI, 49104, USA
| | - Peter J Lyons
- Department of Biology, Andrews University, Berrien Springs, MI, 49104, USA.
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66
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Rees L, König D, Jaźwińska A. Regeneration of the dermal skeleton and wound epidermis formation depend on BMP signaling in the caudal fin of platyfish. Front Cell Dev Biol 2023; 11:1134451. [PMID: 36846592 PMCID: PMC9946992 DOI: 10.3389/fcell.2023.1134451] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 01/24/2023] [Indexed: 02/11/2023] Open
Abstract
Fin regeneration has been extensively studied in zebrafish, a genetic model organism. Little is known about regulators of this process in distant fish taxa, such as the Poeciliidae family, represented by the platyfish. Here, we used this species to investigate the plasticity of ray branching morphogenesis following either straight amputation or excision of ray triplets. This approach revealed that ray branching can be conditionally shifted to a more distal position, suggesting non-autonomous regulation of bone patterning. To gain molecular insights into regeneration of fin-specific dermal skeleton elements, actinotrichia and lepidotrichia, we localized expression of the actinodin genes and bmp2 in the regenerative outgrowth. Blocking of the BMP type-I receptor suppressed phospho-Smad1/5 immunoreactivity, and impaired fin regeneration after blastema formation. The resulting phenotype was characterized by the absence of bone and actinotrichia restoration. In addition, the wound epidermis displayed extensive thickening. This malformation was associated with expanded Tp63 expression from the basal epithelium towards more superficial layers, suggesting abnormal tissue differentiation. Our data add to the increasing evidence for the integrative role of BMP signaling in epidermal and skeletal tissue formation during fin regeneration. This expands our understanding of common mechanisms guiding appendage restoration in diverse clades of teleosts.
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Affiliation(s)
- Lana Rees
- Department of Biology, University of Fribourg, Fribourg, Switzerland
| | - Désirée König
- Department of Biology, University of Fribourg, Fribourg, Switzerland
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Henderson S, Dunne EM, Fasey SA, Giles S. The early diversification of ray-finned fishes (Actinopterygii): hypotheses, challenges and future prospects. Biol Rev Camb Philos Soc 2023; 98:284-315. [PMID: 36192821 PMCID: PMC10091770 DOI: 10.1111/brv.12907] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 09/12/2022] [Accepted: 09/14/2022] [Indexed: 01/12/2023]
Abstract
Actinopterygii makes up half of living vertebrate diversity, and study of fossil members during their Palaeozoic rise to dominance has a long history of descriptive work. Although research interest into Palaeozoic actinopterygians has increased in recent years, broader patterns of diversity and diversity dynamics remain critically understudied. Past studies have investigated macroevolutionary trends in Palaeozoic actinopterygians in a piecemeal fashion, variably using existing compendia of vertebrates or literature-based searches. Here, we present a comprehensive occurrence-based dataset of actinopterygians spanning the whole of the Palaeozoic. We use this to produce the first through-Palaeozoic trends in genus and species counts for Actinopterygii. Diversity through time generally tracks metrics for sampling, while major taxonomic problems pervading the Palaeozoic actinopterygian record obscure diversity trends. Many described species are concentrated in several particularly problematic 'waste-basket' genera, hiding considerable morphological and taxonomic diversity. This taxonomic confusion also feeds into a limited understanding of phylogenetic relationships. A heavy sampling bias towards Europe and North America exists in both occurrence databases and available phylogenetic matrices, with other regions underrepresented despite yielding important data. Scrutiny of the extent to which spatial biases influence the actinopterygian record is lacking, as is research on other forms of bias. Low richness in some time periods may be linked to geological biases, while the effects of taphonomic biases on Palaeozoic actinopterygians have not yet been investigated. Efforts are already underway both to redescribe poorly defined taxa and to describe taxa from underrepresented regions, helping to address taxonomic issues and accuracy of occurrence data. New methods of sampling standardisation utilising up-to-date occurrence databases will be critical in teasing apart biological changes in diversity and those resulting from bias. Lastly, continued phylogenetic work will enable the use of phylogenetic comparative methods to elucidate the origins of actinopterygian biogeography and subsequent patterns of radiation throughout their rise to dominate aquatic faunas.
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Affiliation(s)
- Struan Henderson
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Emma M Dunne
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.,GeoZentrum Nordbayern, Friedrich-Alexander Universität Erlangen-Nürnberg (FAU), Loewenichstraße 28, Erlangen, 91054, Germany
| | - Sophie A Fasey
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Sam Giles
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.,Department of Earth Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD, UK
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68
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López-Solano A, Nester TL, Perea S, Doadrio I. Complete mitochondrial genome of the Spanish toothcarp, Aphanius iberus (Valenciennes, 1846) (Actinopterygii, Aphaniidae) and its phylogenetic position within the Cyprinodontiformes order. Mol Biol Rep 2023; 50:2953-2962. [PMID: 36650373 PMCID: PMC10042920 DOI: 10.1007/s11033-022-08236-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Accepted: 12/22/2022] [Indexed: 01/19/2023]
Abstract
BACKGROUND The Spanish toothcarp (Aphanius iberus Valenciennes, 1846) is a small fish endemic to the eastern coastline of the Iberian Peninsula and is currently listed as "Endangered" (category IUCN: EN). It mainly inhabits brackish waters which can exhibit large fluctuations in temperature and salinity throughout the year. The genetics of A. iberus are not well-known since most studies have only evaluated the genetic structure of the species under a conservation framework in order to identify its potential conservation units. Different phylogenetic relationships of Aphanius have been published based on some particular genes. In the present study, the entire mitochondrial genome of A. iberus was obtained for the first time in the context of an A. iberus reference genome and a hypothesis regarding its phylogenetic position was considered. METHODS AND RESULTS The mitogenome (a circular doble-stranded DNA sequence of 16,708 bp) was reconstructed and aligned against 83 Cyprinodontiformes and two outgroup taxa to identify the phylogenetic position of A. iberus. PartitionFinder was first used to test for the best evolutionary model and the phylogenetic analyses were performed using two methods: Maximun-Likelihood Approximation (IQ-Tree) and Bayesian inference (MrBayes). Our results show that A. iberus forms a sister group with Orestias ascotanensis, a cyprinodontiform species native to South America. CONCLUSIONS The results were congruent with the traditional morphometric reconstructed trees and with a geological vicariant hypothesis involving Cyprinodontiformes where Aphaniidae is shown as a monophyletic family separated from the family Cyprinodontidae. The information gathered from this study is not only valuable for improving our understanding of the evolutionary history of A. iberus, but for future genomic studies involving the species.
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Affiliation(s)
- Alfonso López-Solano
- Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales (CSIC), Madrid, Spain.
| | - Tessa Lynn Nester
- Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales (CSIC), Madrid, Spain
| | - Silvia Perea
- Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales (CSIC), Madrid, Spain.,Departamento de Zoología, Instituto de Biología, Universidad Nacional Autónoma de México, Tercer Circuito Exterior S/N, C.P. 04510, Ciudad de Mexico, Mexico
| | - Ignacio Doadrio
- Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales (CSIC), Madrid, Spain
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69
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Carnicer C, Lima LB, Pelicice FM, Lima-Junior DP. Global trends, biases and gaps in the scientific literature about freshwater fish eggs and larvae. JOURNAL OF FISH BIOLOGY 2023; 102:83-95. [PMID: 36209499 DOI: 10.1111/jfb.15242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 10/04/2022] [Indexed: 06/16/2023]
Abstract
Syntheses of knowledge are important to reveal trends, biases and gaps in the scientific literature, indicating main data shortfalls and research needs. In this regard, the authors conducted a broad systematic review on the literature about freshwater fish eggs and larvae to investigate (a) temporal trends in the global scientific production, (b) the scope and habitat types, (c) the spatial distribution of studies, (d) the fish species contemplated and their respective conservation status and (e) the factors associated with the spatial distribution of studies. They analysed 654 studies published between 1950 and 2020. The number of studies has increased over time, but with a weak trend. Most studies investigated basic questions about biology and ecology and were carried out chiefly in rivers and lakes. These studies covered 95 freshwater ecoregions (22.3% of all ecoregions) and recorded 871 fish species (4.8% of all freshwater fish currently described). Most species were assessed by the IUCN and classified into six threat categories, but approximately 35% were not evaluated. The main drivers affecting the spatial distribution of studies were ecoregion area, road density, river volume and the number of hydroelectric plants. Results point to significant biases and gaps in the global scientific literature on fish eggs and larvae, especially associated with habitat type, spatial distribution and target species, emphasizing the need to address specific topics. Such biases and gaps indicate the existence of important data shortfalls, which compromise management and conservation planning, as information on fish eggs and larvae is basic and critical for the assessment of fish recruitment and population dynamics.
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Affiliation(s)
- Cleide Carnicer
- Programa de Pós-graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso - UNEMAT, Nova Xavantina, Mato Grosso, Brazil
- Laboratório de Ecologia e Conservação de Ecossistemas Aquáticos, Universidade Federal de Mato Grosso, Pontal do Araguaia, Mato Grosso, Brazil
| | - Luciano B Lima
- Laboratório de Ecologia e Conservação de Ecossistemas Aquáticos, Universidade Federal de Mato Grosso, Pontal do Araguaia, Mato Grosso, Brazil
| | - Fernando Mayer Pelicice
- Núcleo de Estudos Ambientais, Universidade Federal do Tocantins, Porto Nacional, Tocantins, Brazil
| | - Dilermando Pereira Lima-Junior
- Programa de Pós-graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso - UNEMAT, Nova Xavantina, Mato Grosso, Brazil
- Laboratório de Ecologia e Conservação de Ecossistemas Aquáticos, Universidade Federal de Mato Grosso, Pontal do Araguaia, Mato Grosso, Brazil
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70
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Macate IE, Bessa-Silva A, Caires RA, Vallinoto M, Giarrizzo T, Angulo A, Ruiz-Campos G, Sampaio I, Guimarães-Costa A. Phylogenetic relationships of sleeper gobies (Eleotridae: Gobiiformes: Gobioidei), with comments on the position of the miniature genus Microphilypnus. Sci Rep 2022; 12:22162. [PMID: 36550282 PMCID: PMC9780216 DOI: 10.1038/s41598-022-26555-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Accepted: 12/16/2022] [Indexed: 12/24/2022] Open
Abstract
Microphilypnus and Leptophilypnion are miniaturized genera within the family Eleotridae. The evolutionary relationships among these taxa are still poorly understood, and molecular analyses are restricted to mitochondrial genes, which have not been conclusive. We compiled both mitochondrial and nuclear genes to study the phylogenetic position of Microphilypnus and the evolutionary history and relationships of eleotrids. We propose that Microphilypnus and Leptophilypnus (a non-miniature genus) are not sister groups as suggested by previous studies, but rather separate lineages that arose in the early Eocene, with Leptophilypnus recovered as a sister group to the other analyzed eleotrids. In fact, Microphilypnus is currently associated with the Neotropical clade Guavina/Dormitator/Gobiomorus. We also identified a well-supported clade that indicated Gobiomorus and Hemieleotris as paraphyletic groups, besides a close relationship among Calumia godeffroyi, Bunaka gyrinoides, Eleotris and Erotelis species. This is the first comprehensive report about the evolutionary relationships in members of the family Eleotridae, including multiloci and multispecies approaches. Therefore, we provided new insights about the phylogenetic position of some taxa absent in previous studies, such as the miniature genus Microphilypnus and a recently described species of Eleotris from South America.
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Affiliation(s)
- Isadola Eusébio Macate
- grid.271300.70000 0001 2171 5249Laboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, campus de Bragança, Alameda Leandro Ribeiro, 68600-000 Bragança, Pará Brazil
| | - Adam Bessa-Silva
- grid.271300.70000 0001 2171 5249Laboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, campus de Bragança, Alameda Leandro Ribeiro, 68600-000 Bragança, Pará Brazil ,grid.5808.50000 0001 1503 7226CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661 Vairão, Portugal
| | - Rodrigo Antunes Caires
- grid.11899.380000 0004 1937 0722Laboratório de Diversidade, Ecologia e Distribuição de Peixes, Instituto Oceanografico da Universidade de São Paulo, Praça do Oceanografico, Butantã, 05508-120, São Paulo, Brazil
| | - Marcelo Vallinoto
- grid.271300.70000 0001 2171 5249Laboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, campus de Bragança, Alameda Leandro Ribeiro, 68600-000 Bragança, Pará Brazil ,grid.5808.50000 0001 1503 7226CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661 Vairão, Portugal
| | - Tommaso Giarrizzo
- grid.271300.70000 0001 2171 5249Laboratório de Biologia Pesqueira - Manejo de Recursos Aquáticos, Universidade Federal do Pará, Campus do Guamá, Av. Perimetral. 2651, Belém, Pará Brazil
| | - Arturo Angulo
- grid.412889.e0000 0004 1937 0706Museo de Zoología, Escuela de Biología, Universidad de Costa Rica, San Pedro de Montes de Oca, San José, Costa Rica ,grid.412889.e0000 0004 1937 0706Centro de Investigación en Biodiversidad y Ecología Tropical, Museo de Zoología, Universidad de Costa Rica, San Pedro de Montes de Oca, San José, 11501–2060 Costa Rica
| | - Gorgonio Ruiz-Campos
- grid.412852.80000 0001 2192 0509Facultad de Ciencias, Universidad Autónoma de Baja California, 22860 Ensenada, Baja California Mexico
| | - Iracilda Sampaio
- grid.271300.70000 0001 2171 5249Laboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, campus de Bragança, Alameda Leandro Ribeiro, 68600-000 Bragança, Pará Brazil
| | - Aurycéia Guimarães-Costa
- grid.271300.70000 0001 2171 5249Laboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, campus de Bragança, Alameda Leandro Ribeiro, 68600-000 Bragança, Pará Brazil
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Vaz DFB, Hilton EJ. Skeletal ontogeny of the Plainfin Midshipman, Porichthys notatus (Percomorphacea: Batrachoidiformes). J Anat 2022; 242:447-494. [PMID: 36524549 PMCID: PMC9919480 DOI: 10.1111/joa.13794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Revised: 11/08/2022] [Accepted: 11/09/2022] [Indexed: 12/23/2022] Open
Abstract
Batrachoidiformes are benthic fishes that utilize the undersides of rocks as spawning nests. Their larvae are attached to the nest and nourished by a large yolk sac. The evolutionary shift from feeding, free-swimming larvae to sedentary larvae that are reliant on their yolk sac for nutrition can lead to changes in skeletal development. Batrachoidiformes also have many morphological specializations, such as five pectoral-fin radials (versus four in other acanthomorphs) that are of uncertain homology, the determination of which may have phylogenetic implications. A larval series of Porichthys notatus was collected and its skeletal ontogeny is described. In P. notatus the ossification of the pharyngeal toothplates occurs relatively later than in percomorphs with free-swimming larvae. The posterior basibranchial copula cartilage (= fourth basibranchial) in Porichthys notatus has a unique development among fishes: it initially develops as a paired element at 6.8-7.1 mm NL before fusing posteriorly and forming single median cartilage at 7.4 mm SL. Cartilages of hypobranchial four are transitory, being observed in two specimens of 6.8 and 7.3 mm NL before fusing with ceratobranchial four. The previously identified dorsalmost pectoral radial is a bone formed by a hypertrophied propterygium that ossifies later in development. The earliest stages of P. notatus have three dorsal spines, but during late larval development, the growth of the third dorsal spine is interrupted. The development of P. notatus is compared and discussed in context to that of other acanthomorph.
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Affiliation(s)
- Diego F. B. Vaz
- Museum of Comparative ZoologyHarvard UniversityCambridgeMassachusettsUSA,Guam Ecosystems Collaboratorium Biorepository, Guam EPSCoRMarine Laboratory, University of GuamMangilaoGuamUSA
| | - Eric J. Hilton
- Department of Fisheries ScienceVirginia Institute of Marine Science, William & MaryGloucester PointVirginiaUSA
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Benkaroun J, Bergmann SM, Römer-Oberdörfer A, Demircan MD, Tamer C, Kachh GR, Weidmann M. New Insights into Lymphocystis Disease Virus Genome Diversity. Viruses 2022; 14:v14122741. [PMID: 36560745 PMCID: PMC9781669 DOI: 10.3390/v14122741] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 12/02/2022] [Accepted: 12/05/2022] [Indexed: 12/14/2022] Open
Abstract
Lymphocystis disease viruses (LCDVs) are viruses that infect bony fish which has been found in different locations across the globe. Four virus species have been classified by the International Committee on Taxonomy of Viruses (ICTV), despite remarkable discrepancies in genome size. Whole genome sequencing and phylogenetic analysis of LCDVs from wild fish from the North Sea and partial sequences from gilthead sea bream of an aquafarm located in the Aegean Sea in Turkey confirm that the LCDV1 genome at 100 kb is approximately half the size of the genomes of LCDV2-4. Since the fish species, of which LCDV1 was isolated, differ taxonomically at the order level, co-speciation can be excluded as the driver of the adaptation of the genome of this nucleocytoplasmic large DNA virus, but may represent an adaptation to the lifestyle of this demersal fish in the northeast Atlantic.
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Affiliation(s)
- Jessica Benkaroun
- Institute of Aquaculture, University of Stirling, Stirling FK9 4LA, Scotland, UK
| | - Sven M. Bergmann
- Institute of Infectology, Friedrich-Loffler-Institute (FLI), Federal Research Institute for Animal Health, 17493 Greifswald, Germany
- Jockey Club College of Veterinary Medicine, City University of Hong Kong, Hong Kong
| | - Angela Römer-Oberdörfer
- Institute of Infectology, Friedrich-Loffler-Institute (FLI), Federal Research Institute for Animal Health, 17493 Greifswald, Germany
| | | | - Cüneyt Tamer
- Department of Virology, Faculty of Veterinary Medicine, Ondokuz Mayis University, 55200 Samsun, Turkey
| | | | - Manfred Weidmann
- Institute of Aquaculture, University of Stirling, Stirling FK9 4LA, Scotland, UK
- Medizinische Hochschule Brandenburg Theodor Fontane, 01968 Senftenberg, Germany
- Correspondence:
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73
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Identification of fish species through tRNA-based primer design. BMC Bioinformatics 2022; 22:633. [PMID: 36474163 PMCID: PMC9724258 DOI: 10.1186/s12859-022-04717-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 05/05/2022] [Indexed: 12/12/2022] Open
Abstract
BACKGROUND The correct establishment of the barcode classification system for fish can facilitate biotaxonomists to distinguish fish species, and it can help the government to verify the authenticity of the ingredients of fish products or identify unknown fish related samples. The Cytochrome c oxidation I (COI) gene sequence in the mitochondria of each species possesses unique characteristics, which has been widely used as barcodes in identifying species in recent years. Instead of using COI gene sequences for primer design, flanking tRNA segments of COI genes from 2618 complete fish mitochondrial genomes were analyzed to discover suitable primers for fish classification at taxonomic family level. The minimal number of primer sets is designed to effectively distinguish various clustered groups of fish species for identification applications. Sequence alignment analysis and cross tRNA segment comparisons were applied to check and ensure the primers for each cluster group are exclusive. RESULTS Two approaches were applied to improve primer design and re-cluster fish species. The results have shown that exclusive primers for 2618 fish species were successfully discovered through in silico analysis. In addition, we applied sequence alignment analysis to confirm that each pair of primers can successfully identify all collected fish species at the taxonomic family levels. CONCLUSIONS This study provided a practical strategy to discover unique primers for each fishery species and a comprehensive list of exclusive primers for extracting COI barcode sequences of all known fishery species. Various applications of verification of fish products or identification of unknown fish species could be effectively achieved.
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74
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Ito T, Morita M, Okuno S, Inaba K, Shiba K, Munehara H, Koya Y, Homma M, Awata S. Fertilization modes and the evolution of sperm characteristics in marine fishes: Paired comparisons of externally and internally fertilizing species. Ecol Evol 2022; 12:e9562. [PMID: 36479029 PMCID: PMC9720005 DOI: 10.1002/ece3.9562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2022] [Revised: 10/28/2022] [Accepted: 11/04/2022] [Indexed: 12/12/2022] Open
Abstract
Fertilization mode may affect sperm characteristics, such as morphology, velocity, and motility. However, there is little information on how fertilization mode affects sperm evolution because several factors (e.g., sperm competition) are intricately intertwined when phylogenetically distant species are compared. Here, we investigated sperm characteristics by comparing seven externally and four internally fertilizing marine fishes from three different groups containing close relatives, considering sperm competition levels. The sperm head was significantly slenderer in internal fertilizers than in external fertilizers, suggesting that a slender head is advantageous for swimming in viscous ovarian fluid or in narrow spaces of the ovary. In addition, sperm motility differed between external and internal fertilizers; sperm of external fertilizers were only motile in seawater, whereas sperm of internal fertilizers were only motile in an isotonic solution. These results suggest that sperm motility was adapted according to fertilization mode. By contrast, total sperm length and sperm velocity were not associated with fertilization mode, perhaps because of the different levels of sperm competition. Relative testis mass (an index of sperm competition level) was positively correlated with sperm velocity and negatively correlated with the ratio of sperm head length to total sperm length. These findings suggest that species with higher levels of sperm competition have faster sperm with longer flagella relative to the head length. These results contradict the previous assumption that the evolution of internal fertilization increases the total sperm length. In addition, copulatory behavior with internal insemination may involve a large genital morphology, but this is not essential in fish, suggesting the existence of various sperm transfer methods. Although the power of our analyses is not strong because of the limited number of species, we propose a new scenario of sperm evolution in which internal fertilization would increase sperm head length, but not total sperm length, and change sperm motility.
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Affiliation(s)
- Takeshi Ito
- Department of Biology, Graduate School of ScienceOsaka Metropolitan UniversityOsakaJapan,Department of Biology and Geosciences, Graduate School of ScienceOsaka City UniversityOsakaJapan
| | - Masaya Morita
- Sesoko Station, Tropical Biosphere Research CenterUniversity of the RyukyusMotobuJapan
| | - Seiya Okuno
- Department of Biology, Graduate School of ScienceOsaka Metropolitan UniversityOsakaJapan,Department of Biology and Geosciences, Graduate School of ScienceOsaka City UniversityOsakaJapan
| | - Kazuo Inaba
- Shimoda Marine Research CenterUniversity of TsukubaShimodaJapan
| | - Kogiku Shiba
- Shimoda Marine Research CenterUniversity of TsukubaShimodaJapan
| | - Hiroyuki Munehara
- Usujiri Fisheries Station, Field Science Center for Northern BiosphereHokkaido UniversityHakodateJapan
| | - Yasunori Koya
- Department of Biology, Faculty of EducationGifu UniversityGifuJapan
| | | | - Satoshi Awata
- Department of Biology, Graduate School of ScienceOsaka Metropolitan UniversityOsakaJapan,Department of Biology and Geosciences, Graduate School of ScienceOsaka City UniversityOsakaJapan
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75
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Identification of Potentially Tolerated Fish Species by Multiplex IgE Testing of a Multinational Fish-Allergic Patient Cohort. THE JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY. IN PRACTICE 2022; 10:3284-3292. [PMID: 36002102 DOI: 10.1016/j.jaip.2022.08.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 08/10/2022] [Accepted: 08/10/2022] [Indexed: 12/14/2022]
Abstract
BACKGROUND Although recent studies indicated that many fish-allergic patients may safely consume certain fish species, no clinical guidelines are available for identification of the exact species tolerated by specific patients. OBJECTIVE To investigate whether multiplex immunoglobulin E (IgE) testing reveals potentially tolerated fish through absence of IgE to parvalbumin (PV) and extracts from specific species. METHODS Sera from 263 clinically well-defined fish-allergic patients from Austria, China, Denmark, Luxembourg, Norway, and Spain were used in a research version of the ALEX2 multiplex IgE quantification assay. Specific IgE to PVs from 10 fish species (9 bony and 1 cartilaginous), and to extracts from 7 species was quantified. The IgE signatures of individual patients and patient groups were analyzed using SPSS and R. RESULTS Up to 38% of the patients were negative to cod PV, the most commonly used molecule in fish allergy diagnosis. Forty-five patients (17%) tested negative to PVs but positive to the respective fish extracts, underlining the requirement for extracts for accurate diagnosis. Between 60% (Spain) and 90% (Luxembourg) of the patients were negative to PV and extracts from ray, a cartilaginous fish, indicating its potential tolerance. Up to 21% of the patients were negative to at least 1 bony fish species. Of the species analyzed, negativity to mackerel emerged as the best predictive marker of negativity to additional bony fish, such as herring and swordfish. CONCLUSIONS Parvalbumins and extracts from multiple fish species relevant for consumption should be used in fish-allergy diagnosis, which may help identify potentially tolerated species for individual patients.
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76
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Moore GI, Wakefield CB, DiBattista JD, Newman SJ. Hyporthodus griseofasciatus (Perciformes: Epinephelidae), a new species of deep-water grouper from the west coast of Australia. JOURNAL OF FISH BIOLOGY 2022; 101:1540-1556. [PMID: 36307378 DOI: 10.1111/jfb.15231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
A new species of deep-water epinephelid fish is described from the west coast of Australia based on 14 specimens, 99-595 mm standard length. Hyporthodus griseofasciatus sp. nov. is endemic to Western Australia from Barrow Island to Two Peoples Bay in depths of 76-470 m. It has a series of eight grey bands alternating with eight brown bands along the body and the soft dorsal, soft anal and caudal fin margins are pale cream to white. It is distinguished from its nearest congener, H. ergastularius, by the presence of a star-like pattern of radiating lines on the head versus an overall brownish colour in the latter as well as significant differences in the quantitative analyses of 25 morphological characters. The two species have allopatric distributions on either side of the Australian continent. H. griseofasciatus is distinguished from H. octofasciatus by several grey bands being distinctly narrower than other grey bands (vs. all grey bands subequal in the latter) and the presence of broad white margins on the dorsal, caudal and anal fins (vs. narrow or absent in the latter). Some scale counts appear to also differ. Analyses of mitochondrial cytochrome oxidase subunit 1 sequences revealed reciprocally monophyletic clades with fixed differences and genetic distances typical of recently diverged species of fishes.
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Affiliation(s)
- Glenn I Moore
- Collections and Research, Western Australian Museum, Welshpool, Western Australia, Australia
- School of Biological Sciences, University of Western Australia, Nedlands, Western Australia, Australia
| | - Corey B Wakefield
- Western Australian Fisheries and Marine Research Laboratories, Department of Primary Industries and Regional Development, Government of Western Australia, North Beach, Western Australia, Australia
- School of Molecular and Life Sciences, Curtin University, Perth, Western Australia, Australia
| | - Joseph D DiBattista
- School of Molecular and Life Sciences, Curtin University, Perth, Western Australia, Australia
- Australian Museum Research Institute, Sydney, New South Wales, Australia
| | - Stephen J Newman
- Western Australian Fisheries and Marine Research Laboratories, Department of Primary Industries and Regional Development, Government of Western Australia, North Beach, Western Australia, Australia
- School of Molecular and Life Sciences, Curtin University, Perth, Western Australia, Australia
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77
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Chang HJ, Mok HK, Fine ML, Soong K, Chen YY, Chen TY. Vocal repertoire and sound characteristics in the variegated cardinalfish, Fowleria variegata (Pisces: Apogonidae). THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2022; 152:3716. [PMID: 36586836 DOI: 10.1121/10.0016441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 11/21/2022] [Indexed: 06/17/2023]
Abstract
The variegated cardinalfish Fowleria variegata produces grunt and hoot calls during agonistic and courtship interactions. Both sounds are tonal and occur as single and multiunit calls. Grunts are of short duration with variable frequency spectra. Hoots are longer, have a higher fundamental frequency, and a more developed harmonic structure. Agonistic grunt calls and short hoot calls (1-2 hoots) are produced during chases and when striking an individual or a mirror. Grunts are produced primarily in male-female and mirror-image encounters, and short hoot calls are produced primarily in male-male interactions. During the reproductive period, long hoot calls (three and four hoots) are the main sound type in a mix-sexed tank and at Dongsha Atoll. These are likely produced by males because isolated females are silent, and isolated males emit long hoot calls. Courtship interactions are mostly silent, and males are silent after capturing eggs for oral brooding. Tank sounds peak at dusk to early evening with a smaller peak at noon, although there are dusk and dawn peaks at Dongsha Atoll. Tank sounds exhibit a semilunar rhythm with peaks at the new and full moon. Other cardinalfish species from the atoll produce grunts but not hoot calls.
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Affiliation(s)
- Hai-Jin Chang
- Department of Oceanography, National Sun Yat-sen University, 70 Lienhai Rd., Kaohsiung 80424, Taiwan
| | - Hin-Kiu Mok
- Department of Oceanography, National Sun Yat-sen University, 70 Lienhai Rd., Kaohsiung 80424, Taiwan
| | - Michael L Fine
- Department of Biology, Virginia Commonwealth University, Richmond, Virginia 23284-2012, USA
| | - Keryea Soong
- Department of Oceanography, National Sun Yat-sen University, 70 Lienhai Rd., Kaohsiung 80424, Taiwan
| | - Yu-Yun Chen
- Nature Science, General Education Center, Aletheia University, 32, Zhen-Li St., Tamsui Dist., New Taipei City 25103, Taiwan
| | - Te-Yu Chen
- Department of Oceanography, National Sun Yat-sen University, 70 Lienhai Rd., Kaohsiung 80424, Taiwan
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78
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Pereira FB, González-Solís D. Review of the parasitic nematodes of marine fishes from off the American continent. Parasitology 2022; 149:1928-1941. [PMID: 36076284 PMCID: PMC11010509 DOI: 10.1017/s0031182022001287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 08/29/2022] [Accepted: 08/31/2022] [Indexed: 12/29/2022]
Abstract
The ichthyofauna of the Atlantic and Pacific coasts off the American continent is very rich. Consequently, a high biodiversity of nematodes parasitizing these vertebrates is also expected. Currently, data on nematode parasites of marine fish off the Americas are fragmented. A review of all adult nematode species reported parasitizing marine fish from off the American continent is herein presented, as well as comments on their patterns of diversity, life cycles and advances in the taxonomic and phylogenetic knowledge. A total of 209 valid species, 19 species inquirendae and 6 dubious records have been recorded, the majority from the fish taxa Eupercaria and Perciformes. The families Sciaenidae, Serranidae and Lutjanidae, as well as the tropical and temperate Atlantic waters, exhibited the highest records of parasitic nematodes. The Cucullanidae, Philometridae and Cystidicolidae were the most speciose families of nematodes, which may be related to technological advances and relatively recent efforts of taxonomists, resulting in description of new taxa and the resolution of taxonomic problems. Numerous taxonomic questions still need resolution and, even though genetic data have been important for this process, the database is very scarce. This is the first review on all currently known nematode species parasitizing marine fish off the Americas and may serve as an important basis of reference for future approaches on these organisms.
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Affiliation(s)
- Felipe B. Pereira
- Department of Parasitology, Institute of Biological Sciences, Federal University of Minas Gerais, Av. Antonio Carlos, 6627, Pampulha, CEP 31270-901, Belo Horizonte, MG, Brazil
| | - David González-Solís
- El Colegio de la Frontera Sur, Unidad Chetumal, Av. Centenario km 5.5, C.P. 77014, Chetumal, Quintana Roo, Mexico
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79
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Tanaka Y, Miura H, Tamura K, Abe G. Morphological evolution and diversity of pectoral fin skeletons in teleosts. ZOOLOGICAL LETTERS 2022; 8:13. [PMID: 36435818 PMCID: PMC9701400 DOI: 10.1186/s40851-022-00198-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 10/10/2022] [Indexed: 06/16/2023]
Abstract
The Teleostei class has the most species of the fishes. Members of this group have pectoral fins, enabling refined movements in the water. Although teleosts live in a diverse set of environments, the skeletal pattern of pectoral fins in teleosts is considered to show little morphological variability. Here, in order to elucidate variations in pectoral fin skeletons and to identify their evolutionary processes, we compared the pectoral fin skeletons from 27 species of teleosts. We identified several variations and a diversity of pectoral fin skeletal patterns within some teleost groups. Taken together with previous reports on teleost skeletons, our findings reveal that in the course of teleost evolution, there are a mixture of conserved and non-conserved components in the pectoral fin skeletons of teleosts, and that teleosts may have experienced the variation and conservation of the number and shape of the proximal radials, the loss of the mesocoracoid, and the change in the distal radial-fin ray relationship.
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Affiliation(s)
- Yoshitaka Tanaka
- Department of Ecological Developmental Adaptability Life Sciences, Graduate School of Life Sciences, Tohoku University. Aobayama Aoba-Ku, Sendai, 980-8578, Japan.
| | - Hiroki Miura
- Asamushi Aquarium. Asamushi, Aomori, 039-3501, Japan
| | - Koji Tamura
- Department of Ecological Developmental Adaptability Life Sciences, Graduate School of Life Sciences, Tohoku University. Aobayama Aoba-Ku, Sendai, 980-8578, Japan
| | - Gembu Abe
- Division of Developmental Biology, Department of Functional Morphology, School of Life Science, Faculty of Medicine, Tottori University, Nishi-Cho 86, Yonago, 683-8503, Japan.
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80
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Lupše N, Kłodawska M, Truhlářová V, Košátko P, Kašpar V, Bitja Nyom AR, Musilova Z. Developmental changes of opsin gene expression in ray-finned fishes (Actinopterygii). Proc Biol Sci 2022; 289:20221855. [DOI: 10.1098/rspb.2022.1855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
Fish often change their habitat and trophic preferences during development. Dramatic functional differences between embryos, larvae, juveniles and adults also concern sensory systems, including vision. Here, we focus on the photoreceptors (rod and cone cells) in the retina and their gene expression profiles during development. Using comparative transcriptomics on 63 species, belonging to 23 actinopterygian orders, we report general developmental patterns of opsin expression, mostly suggesting an increased importance of the rod opsin (
RH1
) gene and the long-wavelength-sensitive cone opsin, and a decreasing importance of the shorter wavelength-sensitive cone opsin throughout development. Furthermore, we investigate in detail ontogenetic changes in 14 selected species (from Polypteriformes, Acipenseriformes, Cypriniformes, Aulopiformes and Cichliformes), and we report examples of expanded cone opsin repertoires, cone opsin switches (mostly within
RH2
) and increasing rod : cone ratio as evidenced by the opsin and phototransduction cascade genes. Our findings provide molecular support for developmental stage-specific visual palettes of ray-finned fishes and shifts between, which most likely arose in response to ecological, behavioural and physiological factors.
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Affiliation(s)
- Nik Lupše
- Department of Zoology, Faculty of Science, Charles University, Vinicna 7, 12844 Prague, Czech Republic
| | - Monika Kłodawska
- Department of Zoology, Faculty of Science, Charles University, Vinicna 7, 12844 Prague, Czech Republic
| | - Veronika Truhlářová
- Department of Zoology, Faculty of Science, Charles University, Vinicna 7, 12844 Prague, Czech Republic
| | - Prokop Košátko
- Department of Zoology, Faculty of Science, Charles University, Vinicna 7, 12844 Prague, Czech Republic
| | - Vojtěch Kašpar
- Faculty of Fisheries and Protection of Waters, South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Research Institute of Fish Culture and Hydrobiology, University of South Bohemia in České Budějovice, Zátiší 728/II, 389 25 Vodňany, Czech Republic
| | - Arnold Roger Bitja Nyom
- Department of Management of Fisheries and Aquatic Ecosystems, University of Douala, Douala P.O. Box 7236, Cameroon
- Department of Biological Sciences, University of Ngaoundéré, Ngaoundéré P.O. Box 454, Cameroon
| | - Zuzana Musilova
- Department of Zoology, Faculty of Science, Charles University, Vinicna 7, 12844 Prague, Czech Republic
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81
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Chuctaya J, Meza-Vargas V, Faustino-Fuster DR, Hidalgo M, Ortega H. Lista de especies de peces de la cuenca del Río Ucayali, Perú. REVISTA PERUANA DE BIOLOGÍA 2022. [DOI: 10.15381/rpb.v29i4.20049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
En este trabajo se presenta una lista actualizada de los registros de especies de peces de la cuenca del río Ucayali, Perú, provenientes de datos publicados y no publicados. Los resultados muestran que la cuenca del Ucayali presenta una ictiofauna rica y diversificada con el registro de 734 especies distribuidas en 15 órdenes, 49 familias y 292 géneros. La Ictiofauna está compuesta por peces miniatura (4%), peces pequeños (39%), medianos (41%), grandes (13%) y gigantes (3%). Los grupos dominantes son los Characiformes (312 especies, 43.0 %), Siluriformes (270 especies, 36.8%), Gymnotiformes (51 especies, 6.9%), y Cichliformes (50 especies, 6.8%). Parte de la ictiofauna es compartida con cuencas adyacentes como Marañón, y Amazonas peruano, principalmente en la región de confluencia, lo que contribuye a la notable diversidad de peces en la cuenca. Se observó una alta riqueza de especies con distribución restricta de los géneros Orestias, Astroblepus, Trichomycterus, Hemibrycon, entre otras especies, que ocurren en la región de cabeceras. Estimativos de riqueza de especies considerando su distribución por cada 100 m de altitud, indican que la cuenca del Ucayali esta subestimada, esperándose encontrar hasta 1125 especies. Los resultados aquí presentados son antecedentes que coadyuvaran a la toma de decisiones con fines de conservación y desarrollo sustentable en la región amazónica.
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82
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Shaughnessy CA, Jensen MF, Dores RM. A basal actinopterygian melanocortin receptor: Molecular and functional characterization of an Mc2r ortholog from the Senegal bichir (Polypterus senegalus). Gen Comp Endocrinol 2022; 328:114105. [PMID: 35973587 DOI: 10.1016/j.ygcen.2022.114105] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Revised: 08/09/2022] [Accepted: 08/11/2022] [Indexed: 12/14/2022]
Abstract
In bony vertebrates, melanocortin 2 receptor (Mc2r) specifically binds adrenocorticotropic hormone (ACTH) and is responsible for mediating anterior pituitary signaling that stimulates corticosteroid production in the adrenal gland/interrenal cells. In bony fishes Mc2r requires the chaperoning of an accessory protein (Mrap1) to traffic to the membrane surface and bind ACTH. Here, we evaluated the structure and pharmacological properties of Mc2r from the Senegal bichir (Polypterus senegalus), which represents the most basal bony fish from which an Mc2r has been pharmacologically studied to date. In our experiments, cDNA constructs of the Mc2r from the Senegal bichir (sbMc2r) and various vertebrate Mrap1s were heterologously co-expressed in Chinese hamster ovary (CHO) cells, stimulated by ACTH or melanocyte-stimulating hormone (α-MSH) ligands, and assessed using a luciferase reporter gene assay. When expressed without an Mrap1, sbMc2r was not activated by ACTH. When co-expressed with Mrap1 from either chicken (Gallus gallus) or bowfin (Amia calva), sbMc2r could be activated in a dose-dependent manner by ACTH, but not α-MSH. Co-expression of sbMrap2 with sbMc2r resulted in no detectable activation of the receptor. Collectively, these results demonstrate that sbMc2r has pharmacological properties similar to those of Mc2rs of later-evolved bony fishes, such as Mrap1 dependence and ACTH selectivity, indicating that these qualities of Mc2r function are ancestral to all bony fish Mc2rs.
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Affiliation(s)
| | - Mary F Jensen
- Department of Biological Sciences, University of Denver, Denver, CO
| | - Robert M Dores
- Department of Biological Sciences, University of Denver, Denver, CO
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83
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Schedel FDB, Musilova Z, Indermaur A, Bitja‐Nyom AR, Salzburger W, Schliewen UK. Towards the phylogenetic placement of the enigmatic African genus Prolabeops Schultz, 1941. JOURNAL OF FISH BIOLOGY 2022; 101:1333-1342. [PMID: 36053860 PMCID: PMC9826184 DOI: 10.1111/jfb.15205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 08/24/2022] [Indexed: 06/15/2023]
Abstract
The small cyprinid genus Prolabeops Schultz, 1941 is restricted to the Nyong and Sanaga River systems in Cameroon. In the past, the genus had been suggested to be either a member of the Labeoninae, Torinae or the Smiliogastrinae mainly on the basis of morphological similarities, and it is nowadays considered as incertae sedis within the Cypriniformes. This study provides the first attempt to reveal the phylogenetic position of Prolabeops using molecular data. For this purpose, the authors sequenced a large fraction of the mitochondrial genome (c. 13,600 bp), including all mitochondrial protein coding genes, of two Prolabeops melanhypopterus specimens and an additional four Enteromius specimens. The large-scale phylogenetic analysis was based on an alignment including all mitochondrial protein coding genes of 902 specimens representing c. 899 cypriniform species. Prolabeops was clearly recovered within the African Smiliogastrinae, forming a weakly supported clade together with Enteromius jae, Enteromius hulstaerti and Barboides gracilis. The study data underline the urgent need of a thorough taxonomic revision of the small African barbs collectively placed in the genus Enteromius.
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Affiliation(s)
- Frederic D. B. Schedel
- Zoological InstituteUniversity of BaselBaselSwitzerland
- Faculty of Biology, Division of Evolutionary BiologyLMU MunichMartinsriedGermany
| | - Zuzana Musilova
- Department of Zoology, Faculty of ScienceCharles UniversityPragueCzech Republic
| | | | - Arnold Roger Bitja‐Nyom
- Department of Biological SciencesUniversity of NgaoundéréNgaoundéréCameroon
- Department of Management of Fisheries and Aquatic EcosystemsUniversity of DoualaDoualaCameroon
| | | | - Ulrich K. Schliewen
- Department of IchthyologySNSB‐Bavarian State Collection Zoology (ZSM)MunichGermany
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84
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Alternating regimes of shallow and deep-sea diversification explain a species-richness paradox in marine fishes. Proc Natl Acad Sci U S A 2022; 119:e2123544119. [PMID: 36252009 PMCID: PMC9618140 DOI: 10.1073/pnas.2123544119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The deep sea contains a surprising diversity of life, including iconic fish groups such as anglerfishes and lanternfishes. Still, >65% of marine teleost fish species are restricted to the photic zone <200 m, which comprises less than 10% of the ocean's total volume. From a macroevolutionary perspective, this paradox may be explained by three hypotheses: 1) shallow water lineages have had more time to diversify than deep-sea lineages, 2) shallow water lineages have faster rates of speciation than deep-sea lineages, or 3) shallow-to-deep sea transition rates limit deep-sea richness. Here we use phylogenetic comparative methods to test among these three non-mutually exclusive hypotheses. While we found support for all hypotheses, the disparity in species richness is better described as the uneven outcome of alternating phases that favored shallow or deep diversification over the past 200 million y. Shallow marine teleosts became incredibly diverse 100 million y ago during a period of warm temperatures and high sea level, suggesting the importance of reefs and epicontinental settings. Conversely, deep-sea colonization and speciation was favored during brief episodes when cooling temperatures increased the efficiency of the ocean's carbon pump. Finally, time-variable ecological filters limited shallow-to-deep colonization for much of teleost history, which helped maintain higher shallow richness. A pelagic lifestyle and large jaws were associated with early deep-sea colonists, while a demersal lifestyle and a tapered body plan were typical of later colonists. Therefore, we also suggest that some hallmark characteristics of deep-sea fishes evolved prior to colonizing the deep sea.
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85
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Zatti SA, Marinho AMR, Adriano EA, Maia AAM. Integrative Taxonomy Reveals a Panmictic Population of Henneguya longisporoplasma n. sp. (Cnidaria: Myxozoa) in the Amazon Basin. Acta Parasitol 2022; 67:1644-1656. [DOI: 10.1007/s11686-022-00615-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Accepted: 09/01/2022] [Indexed: 11/01/2022]
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86
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Rawson JRG, Esteve-Altava B, Porro LB, Dutel H, Rayfield EJ. Early tetrapod cranial evolution is characterized by increased complexity, constraint, and an offset from fin-limb evolution. SCIENCE ADVANCES 2022; 8:eadc8875. [PMID: 36083907 PMCID: PMC9462696 DOI: 10.1126/sciadv.adc8875] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 07/26/2022] [Indexed: 06/15/2023]
Abstract
The developmental underpinnings and functional consequences of modifications to the limbs during the origin of the tetrapod body plan are increasingly well characterized, but less is understood about the evolution of the tetrapod skull. Decrease in skull bone number has been hypothesized to promote morphological and functional diversification in vertebrate clades, but its impact during the initial rise of tetrapods is unknown. Here, we test this by quantifying topological changes to cranial anatomy in fossil and living taxa bracketing the fin-to-limb transition using anatomical network analysis. We find that bone loss across the origin of tetrapods is associated not only with increased complexity of bone-to-bone contacts but also with decreasing topological diversity throughout the late Paleozoic, which may be related to developmental and/or mechanical constraints. We also uncover a 10-Ma offset between fin-limb and cranial morphological evolution, suggesting that different evolutionary drivers affected these features during the origin of tetrapods.
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Affiliation(s)
| | - Borja Esteve-Altava
- Institut de Biologia Evolutiva, Departament de Ciències Experimentals i la Salud, Universitat Pompeu Fabra, Barcelona, Spain
| | - Laura B. Porro
- Centre for Integrative Anatomy, Department of Cell and Developmental Biology, UCL, Gower Street, London WC1E 6BT, UK
| | - Hugo Dutel
- School of Earth Sciences, University of Bristol, Bristol BS8 1RJ, UK
- Department of Engineering, University of Hull, Cottingham Road, Hull HU6 7RX, UK
| | - Emily J. Rayfield
- School of Earth Sciences, University of Bristol, Bristol BS8 1RJ, UK
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87
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Nash CM, Lungstrom LL, Hughes LC, Westneat MW. Phylogenomics and body shape morphometrics reveal recent diversification in the goatfishes (Syngnatharia: Mullidae). Mol Phylogenet Evol 2022; 177:107616. [PMID: 35998799 DOI: 10.1016/j.ympev.2022.107616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 07/26/2022] [Accepted: 08/17/2022] [Indexed: 11/16/2022]
Abstract
Clades of marine fishes exhibit many patterns of diversification, ranging from relatively constant throughout time to rapid changes in the rates of speciation and extinction. The goatfishes (Syngnatharia: Mullidae) are a family of marine, reef associated fishes with a relatively recent origin, distributed globally in tropical and temperate waters. Despite their abundance and economic importance, the goatfishes remain one of the few coral reef families for which the species level relationships have not been examined using genomic techniques. Here we use phylogenomic analysis of ultra-conserved elements (UCE) and exon data to resolve a well-supported, time-calibrated phylogeny for 72 species of goatfishes, supporting a recent crown age of the goatfishes at 21.9 million years ago. We used this framework to test hypotheses about the associations among body shape morphometrics, taxonomy, and phylogeny, as well as to explore relative diversification rates across the phylogeny. Body shape was strongly associated with generic-level taxonomy of goatfishes, with morphometric analyses showing evidence for high phylogenetic signal across all morphotypes. Rates of diversification in this clade reveal a recent sharp increase in lineage accumulation, with 92% of the goatfish species sampled across all clades and major body plans having originated in just the past 5 million years. We suggest that habitat diversity in the early Pliocene oceans and the generalist ecology of goatfishes are key factors in the unusual evolutionary tempo of the family Mullidae.
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Affiliation(s)
- Chloe M Nash
- Committee on Evolutionary Biology, University of Chicago, Chicago, IL, United States; Division of Fishes (IRC), Field Museum of Natural History, Chicago, IL, United States.
| | - Linnea L Lungstrom
- Committee on Evolutionary Biology, University of Chicago, Chicago, IL, United States; Division of Fishes (IRC), Field Museum of Natural History, Chicago, IL, United States.
| | - Lily C Hughes
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, United States; Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington DC, United States.
| | - Mark W Westneat
- Committee on Evolutionary Biology, University of Chicago, Chicago, IL, United States; Division of Fishes (IRC), Field Museum of Natural History, Chicago, IL, United States; Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, United States.
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88
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Melo BF, de Pinna MCC, Rapp Py-Daniel LH, Zuanon J, Conde-Saldaña CC, Roxo FF, Oliveira C. Paleogene emergence and evolutionary history of the Amazonian fossorial fish genus Tarumania (Teleostei: Tarumaniidae). Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.924860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Tarumania walkerae is a rare fossorial freshwater fish species from the lower Rio Negro, Central Amazonia, composing the monotypic and recently described family Tarumaniidae. The family has been proposed as the sister group of Erythrinidae by both morphological and molecular studies despite distinct arrangements of the superfamily Erythrinoidea within Characiformes. Recent phylogenomic studies and time-calibrated analyses of characoid fishes have not included specimens of Tarumania in their analyses. We obtained genomic data for T. walkerae and constructed a phylogeny based on 1795 nuclear loci with 488,434 characters of ultraconserved elements (UCEs) for 108 terminals including specimens of all 22 characiform families. The phylogeny confirms the placement of Tarumaniidae as sister to Erythrinidae but differs from the morphological hypothesis in the placement of the two latter families as sister to the clade with Hemiodontidae, Cynodontidae, Serrasalmidae, Parodontidae, Anostomidae, Prochilodontidae, Chilodontidae, and Curimatidae. The phylogeny calibrated with five characoid fossils indicates that Erythrinoidea diverged from their relatives during the Late Cretaceous circa 90 Ma (108–72 Ma), and that Tarumania diverged from the most recent common ancestor of Erythrinidae during the Paleogene circa 48 Ma (66–32 Ma). The occurrence of the erythrinoid-like †Tiupampichthys in the Late Cretaceous–Paleogene formations of the El Molino Basin of Bolivia supports our hypothesis for the emergence of the modern Erythrinidae and Tarumaniidae during the Paleogene.
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89
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Kierdorf H, Kierdorf U, Greven H, Clemen G. Dental structure and tooth attachment modes in the common fangtooth Anoplogaster cornuta (Valenciennes, 1833) (Actinopterygii; Trachichthyiformes; Anoplogastridae). PLoS One 2022; 17:e0272860. [PMID: 35960777 PMCID: PMC9374257 DOI: 10.1371/journal.pone.0272860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Accepted: 07/28/2022] [Indexed: 11/18/2022] Open
Abstract
We studied the structure and attachment modes of the teeth of adult Anoplogaster cornuta using light- and scanning-electron microscopic techniques. All teeth were monocuspid, composed solely of orthodentin, and lacked a covering enameloid cap. Fourteen teeth were present in the oral jaws, with three teeth each on the left and right premaxilla and four teeth each on the left and right dentary. The anteriormost premaxillary and dentary teeth were considerably larger than the more posteriorly located ones. The oral jaw teeth were transparent, non-depressible and firmly ankylosed to their respective dentigerous bone by a largely anosteocytic bone of attachment. No evidence for replacement of the large oral jaw teeth was found in the analyzed adult specimens. The bone of attachment exhibited lower calcium and phosphorus concentrations and a higher Ca/P ratio than the orthodentin. The connection between dentinal tooth shaft and bone of attachment was stabilized by a collar of mineralized collagen fibers. In contrast to the oral jaw teeth, the pharyngeal teeth exhibited a ring-like fibrous attachment to their supporting bones. This mode of attachment provides the teeth with some lateral mobility and allows their depression relative to their supporting bones, which may facilitate intra-pharyngeal prey transport. In contrast, a firm ankylosis was observed in numerous small teeth located on the branchial arches. The function of these teeth is presumably to increase the tightness of the pharyngeal basket and thereby the retention of small prey items in a species living in a habitat with only sparse food supply. Our findings corroborate earlier statements on the tooth attachment modes of the oral jaw teeth of Anoplogaster cornuta, but provide new findings for the attachment modes of pharyngeal teeth in this species.
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Affiliation(s)
- Horst Kierdorf
- Department of Biology, University of Hildesheim, Hildesheim, Germany
- * E-mail:
| | - Uwe Kierdorf
- Department of Biology, University of Hildesheim, Hildesheim, Germany
| | - Hartmut Greven
- Department of Biology, University of Düsseldorf, Düsseldorf, Germany
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90
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Song C, Li W, Wang Z. The Landscape of Liver Chromatin Accessibility and Conserved Non-coding Elements in Larimichthys crocea, Nibea albiflora, and Lateolabrax maculatus. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2022; 24:763-775. [PMID: 35895229 DOI: 10.1007/s10126-022-10142-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Accepted: 07/08/2022] [Indexed: 06/15/2023]
Abstract
Large yellow croaker (Larimichthys crocea), yellow drum (Nibea albiflora), and Chinese seabass (Lateolabrax maculatus) are important economic marine fishes in China. The conserved non-coding elements (CNEs) in the liver tissues of the three kinds of fish are directly or indirectly involved in the regulation of gene expression and affect liver functions. However, the fishes' CNEs and even chromatin accessibility landscape have not been effectively investigated. Hence, this study established the landscapes of the fishes' genome-wide chromatin accessibility and CNEs by detecting regions of the open chromatin in their livers using an assay for transposase-accessible chromatin by high-throughput sequencing (ATAC-seq) and comparative genomics approach. The results showed that Smad1, Sp1, and Foxl1 transcription factor binding motifs were considerably enriched in the chromatin accessibility landscape in the liver of the three species, and the three transcription factors (TFs) had a wide range of common targets. The hypothetical gene set was targeted by one, two, or all three TFs, which was much higher than would be expected for an accidental outcome. The gene sets near the CNEs were mainly enriched through processes such as a macromolecule metabolic process and ribonucleoprotein complex biogenesis. The active CNEs were found in the promoter regions of genes such as ap1g1, hax1, and ndufs2. And 5 CNEs were predicted to be highly conserved active enhancers. These results demonstrated that Smad1, Sp1, and Foxl1 might be related to the liver function in the three fishes. In addition, we found a series of ATAC-seq-labeled CNEs located in the gene promoter regions, and highly conserved H3k27ac + -labeled CNEs located in the liver function genes. The highly conserved nature of these regulatory elements suggests that they play important roles in the liver in fish. This study mined the landscape of chromatin accessibility and CNEs of three important economic fishes to fill the knowledge gaps in this field. Moreover, the work provides useful data for the industrial application and theoretical research of these three fish species.
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Affiliation(s)
- Chaowei Song
- Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture and Rural Affairs, Jimei University, Xiamen, China
| | - Wanbo Li
- Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture and Rural Affairs, Jimei University, Xiamen, China
| | - Zhiyong Wang
- Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture and Rural Affairs, Jimei University, Xiamen, China.
- Laboratory for Marine Fisheries Science and Food Production Processes, National Laboratory for Marine Science and Technology, Qingdao, China.
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91
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Mu X, Yang Y, Sun J, Yi liu, Xu M, Shao C, Chu KH, Li W, Liu C, Gu D, Fang M, Zhang C, Liu F, Song H, Wang X, Chen J, Ma KY. FishPIE: a universal phylogenetically informative exon markers set for ray-finned fishes. iScience 2022; 25:105025. [PMID: 36105587 PMCID: PMC9464953 DOI: 10.1016/j.isci.2022.105025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Revised: 07/11/2022] [Accepted: 08/23/2022] [Indexed: 11/25/2022] Open
Abstract
Understanding the evolutionary history of the highly diverse ray-finned fishes has been challenging, and the development of more universal primers for phylogenetic analyses may help overcoming these challenges. We developed FishPIE, a nested PCR primer set of 82 phylogenetically informative exon markers, and tested it on 203 species from 31 orders of Actinopterygii. We combined orthologous sequences of the FishPIE markers obtained from published genomes and transcriptomes and constructed the phylogeny of 710 species belonging to 190 families and 60 orders. The resulting phylogenies had topologies comparable to previous phylogenomic studies. We demonstrated that the FishPIE markers could address phylogenetic questions across broad taxonomic levels. By incorporating the newly sequenced taxa, we were able to shed new light on the phylogeny of the highly diverse Cypriniformes. Thus, FishPIE holds great promise for generating genetic data for broad taxonomic groups and accelerating our understanding of the fish tree of life. FishPIE is a nested PCR primer set of 82 markers for fish phylogenetic analysis The markers can be broadly applied to all orders of ray-finned fishes Their phylogenetic performance is comparable to that of genomic analyses
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92
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Astudillo-Clavijo V, Stiassny MLJ, Ilves KL, Musilova Z, Salzburger W, López-Fernández H. Exon-based phylogenomics and the relationships of African cichlid fishes: tackling the challenges of reconstructing phylogenies with repeated rapid radiations. Syst Biol 2022; 72:134-149. [PMID: 35880863 DOI: 10.1093/sysbio/syac051] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 07/06/2022] [Accepted: 07/19/2022] [Indexed: 11/13/2022] Open
Abstract
African cichlids (subfamily: Pseudocrenilabrinae) are among the most diverse vertebrates, and their propensity for repeated rapid radiation has made them a celebrated model system in evolutionary research. Nonetheless, despite numerous studies, phylogenetic uncertainty persists, and riverine lineages remain comparatively underrepresented in higher-level phylogenetic studies. Heterogeneous gene histories resulting from incomplete lineage sorting (ILS) and hybridization are likely sources of uncertainty, especially during episodes of rapid speciation. We investigate relationships of Pseudocrenilabrinae and its close relatives while accounting for multiple sources of genetic discordance using species tree and hybrid network analyses with hundreds of single-copy exons. We improve sequence recovery for distant relatives, thereby extending the taxonomic reach of our probes, with a hybrid reference guided/de novo assembly approach. Our analyses provide robust hypotheses for most higher-level relationships and reveal widespread gene heterogeneity, including in riverine taxa. ILS and past hybridization are identified as sources of genetic discordance in different lineages. Sampling of various Blenniiformes (formerly Ovalentaria) adds strong phylogenomic support for convict blennies (Pholidichthyidae) as sister to Cichlidae, and points to other potentially useful protein-coding markers across the order. A reliable phylogeny with representatives from diverse environments will support ongoing taxonomic and comparative evolutionary research in the cichlid model system.
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Affiliation(s)
- Viviana Astudillo-Clavijo
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, M5S 3B2, Canada.,Department of Natural History, Royal Ontario Museum, Toronto, M5S 2C6, Canada.,Department of Ecology and Evolutionary Biology and Museum of Zoology, University of Michigan, Ann Arbor, 48109, USA
| | - Melanie L J Stiassny
- Department of Ichthyology, American Museum of Natural History, New York, 10024-5102, USA
| | - Katriina L Ilves
- Research & Collections, Zoology, Canadian Museum of Nature, Ottawa, K1P 6P4, Canada
| | - Zuzana Musilova
- Department of Zoology, Charles University in Prague, Vinicna 7, Prague, CZ-128 44, Czech Republic
| | - Walter Salzburger
- Zoological Institute, University of Basel, Vesalgasse 1, CH-4051, Basel, Switzerland
| | - Hernán López-Fernández
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, M5S 3B2, Canada.,Department of Natural History, Royal Ontario Museum, Toronto, M5S 2C6, Canada.,Department of Ecology and Evolutionary Biology and Museum of Zoology, University of Michigan, Ann Arbor, 48109, USA
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93
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Ishikawa A, Yamanouchi S, Iwasaki W, Kitano J. Convergent copy number increase of genes associated with freshwater colonization in fishes. Philos Trans R Soc Lond B Biol Sci 2022; 377:20200509. [PMID: 35634928 PMCID: PMC9149799 DOI: 10.1098/rstb.2020.0509] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Accepted: 03/14/2022] [Indexed: 07/20/2023] Open
Abstract
Copy number variation (CNV) can cause phenotypic changes. However, in contrast to amino acid substitutions and cis-regulatory changes, little is known about the functional categories of genes in which CNV is important for adaptation to novel environments. It is also unclear whether the same genes repeatedly change the copy numbers for adapting to similar environments. Here, we investigate CNV associated with freshwater colonization in fishes, which was observed multiple times across different lineages. Using 48 ray-finned fishes across diverse orders, we identified 23 genes whose copy number increases were associated with freshwater colonization. These genes showed enrichment for peptide receptor activity, hexosyltransferase activity and unsaturated fatty acid metabolism. We further revealed that three of the genes showed copy number increases in freshwater populations compared to marine ancestral populations of the stickleback genus Gasterosteus. These results indicate that copy number increases of genes involved in fatty acid metabolism (FADS2), immune function (PSMB8a) and thyroid hormone metabolism (UGT2) may be important for freshwater colonization at both the inter-order macroevolutionary scale and at the intra-genus microevolutionary scale. Further analysis across diverse taxa will help to understand the role of CNV in the adaptation to novel environments. This article is part of the theme issue 'Genetic basis of adaptation and speciation: from loci to causative mutations'.
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Affiliation(s)
- Asano Ishikawa
- Ecological Genetics Laboratory, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan
| | - Shun Yamanouchi
- Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan
| | - Wataru Iwasaki
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan
- Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan
| | - Jun Kitano
- Ecological Genetics Laboratory, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan
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94
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Samayoa AP, Struthers CD, Trnski T, Roberts CD, Liggins L. Molecular phylogenetics reveals the evolutionary history of marine fishes (Actinopterygii) endemic to the subtropical islands of the Southwest Pacific. Mol Phylogenet Evol 2022; 176:107584. [PMID: 35843570 DOI: 10.1016/j.ympev.2022.107584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Revised: 05/03/2022] [Accepted: 05/12/2022] [Indexed: 11/16/2022]
Abstract
Remote oceanic islands of the Pacific host elevated levels of actinopterygian (ray-finned fishes) endemism. Characterizing the evolutionary histories of these endemics has provided insight into the generation and maintenance of marine biodiversity in many regions. The subtropical islands of Lord Howe, Norfolk, and Rangitāhua (Kermadec) in the Southwest Pacific are yet to be comprehensively studied. Here, we characterize the spatio-temporal diversification of marine fishes endemic to these Southwest Pacific islands by combining molecular phylogenies and the geographic distribution of species. We built Bayesian ultrametric trees based on open-access and newly generated sequences for five mitochondrial and ten nuclear loci, and using fossil data for time calibration. We present the most comprehensive phylogenies to date for marine ray-finned fish genera, comprising 34 species endemic to the islands, including the first phylogenetic placements for 11 endemics. Overall, our topologies confirm the species status of all endemics, including three undescribed taxa. Our phylogenies highlight the predominant affinity of these endemics with the Australian fish fauna (53%), followed by the East Pacific (15%), and individual cases where the closest sister taxon of our endemic is found in the Northwest Pacific and wider Indo-Pacific. Nonetheless, for a quarter of our focal endemics, their geographic affinity remains unresolved due to sampling gaps within their genera. Our divergence time estimates reveal that the majority of endemic lineages (67.6%) diverged after the emergence of Lord Howe (6.92 Ma), the oldest subtropical island in the Southwest Pacific, suggesting that these islands have promoted diversification. However, divergence ages of some endemics pre-date the emergence of the islands, suggesting they may have originated outside of these islands, or, in some cases, ages may be overestimated due to unsampled taxa. To fully understand the role of the Southwest Pacific subtropical islands as a 'cradle' for diversification, our study advocates for further regional surveys focused on tissue collection for DNA analysis.
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Affiliation(s)
- André P Samayoa
- School of Natural Sciences, Massey University, Auckland 0745, New Zealand.
| | - Carl D Struthers
- Museum of New Zealand Te Papa Tongarewa, P.O. Box 467, Wellington, New Zealand.
| | - Thomas Trnski
- Natural Sciences, Auckland Museum Tāmaki Paenga Hira, Auckland 1010, New Zealand.
| | - Clive D Roberts
- Museum of New Zealand Te Papa Tongarewa, P.O. Box 467, Wellington, New Zealand.
| | - Libby Liggins
- School of Natural Sciences, Massey University, Auckland 0745, New Zealand; Natural Sciences, Auckland Museum Tāmaki Paenga Hira, Auckland 1010, New Zealand.
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95
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Kaczmarek EB, Gartner SM, Westneat MW, Brainerd EL. Air Breathing and Suction Feeding Kinematics in the West African Lungfish, Protopterus Annectens. Integr Comp Biol 2022; 62:865-877. [PMID: 35798019 DOI: 10.1093/icb/icac109] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 06/17/2022] [Accepted: 06/24/2022] [Indexed: 11/13/2022] Open
Abstract
Research on the water-to-land transition tends to focus on the locomotor changes necessary for terrestriality. But the evolution from water breathing to air breathing was also a necessary precursor to the invasion of land. Air is approximately 1,000 times less dense, 50 times less viscous, and contains hundreds of times more oxygen than water. However, unlike the transition to terrestrial locomotion, breathing air does not require body weight support, so the evolution of air breathing may have necessitated smaller changes to morphology and function. We used X-ray Reconstruction of Moving Morphology to compare the cranial kinematics of aquatic buccal pumping, such as seen in suction feeding, with the aerial buccal pumping required for lung ventilation in the West African lungfish (Protopterus annectens). During buccal pumping behaviors, the cranial bones and associated soft tissues act as valves and pumps, and the sequence of their motions controls the pattern of fluid flow. Both behaviors are characterized by an anterior-to-posterior wave of expansion and an anterior-to-posterior wave of compression. We found that the pectoral girdle and cranial rib rotate consistently during air breathing and suction feeding, and that the muscle between them shortens during buccal expansion. Overall, we conclude that the major cranial bones maintain the same basic functions (i.e., acting as valves or pumps, or transmitting power) across aquatic and aerial buccal pumping. The cranial morphology that enables aquatic buccal pumping is well-suited to perform air-breathing and accommodates the physical differences between air and water.
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Affiliation(s)
- Elska B Kaczmarek
- Department of Ecology, Evolution, and Organismal Biology, Brown University, Providence RI 02912
| | - Samantha M Gartner
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637
| | - Mark W Westneat
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637
| | - Elizabeth L Brainerd
- Department of Ecology, Evolution, and Organismal Biology, Brown University, Providence RI 02912
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96
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Medeiros APM, Santos BA, Betancur-R R. Does genome size increase with water depth in marine fishes? Evolution 2022; 76:1578-1589. [PMID: 35585426 DOI: 10.1111/evo.14510] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Revised: 03/10/2022] [Accepted: 03/28/2022] [Indexed: 01/22/2023]
Abstract
A growing body of research suggests that genome size in animals can be affected by ecological factors. Half a century ago, Ebeling et al. proposed that genome size increases with depth in some teleost fish groups and discussed a number of biological mechanisms that may explain this pattern (e.g., passive accumulation, adaptive acclimation). Using phylogenetic comparative approaches, we revisit this hypothesis based on genome size and ecological data from up to 708 marine fish species in combination with a set of large-scale phylogenies, including a newly inferred tree. We also conduct modeling approaches of trait evolution and implement a variety of regression analyses to assess the relationship between genome size and depth. Our reanalysis of Ebeling et al.'s dataset shows a weak association between these variables, but the overall pattern in their data is driven by a single clade. Although new analyses based on our "all-species" dataset resulted in positive correlations, providing some evidence that genome size evolves as a function of depth, only one subclade consistently yielded statistically significant correlations. By contrast, negative correlations are rare and nonsignificant. All in all, we find modest evidence for an increase in genome size along the depth axis in marine fishes. We discuss some mechanistic explanations for the observed trends.
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Affiliation(s)
- Aline P M Medeiros
- Programa de Pós-Graduação em Ciências Biológicas, Universidade Federal da Paraíba, João Pessoa, 58051-900, Brazil.,Department of Biology, The University of Oklahoma, Norman, Oklahoma, 73019
| | - Bráulio A Santos
- Departamento de Sistemática e Ecologia, Centro de Ciências Exatas e da Natureza, Universidade Federal da Paraíba, João Pessoa, 58051-900, Brazil
| | - Ricardo Betancur-R
- Department of Biology, The University of Oklahoma, Norman, Oklahoma, 73019
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97
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Fischbach V, Moritz T, Thieme P. Postcranial skeletal development of the Atlantic herring (Clupeomorpha: Clupeidae: Clupea harengus). ZOOL ANZ 2022. [DOI: 10.1016/j.jcz.2022.06.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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98
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Pazzaglia UE, Reguzzoni M, Saroglia M, Manconi R, Zarattini G, Raspanti M. The complex rostral morphology and the endoskeleton ossification process of two adult samples of Xiphias gladius (Xiphiidae). JOURNAL OF FISH BIOLOGY 2022; 101:42-54. [PMID: 35481825 PMCID: PMC9545449 DOI: 10.1111/jfb.15069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Accepted: 04/19/2022] [Indexed: 06/14/2023]
Abstract
The authors studied the morphology of the upper and lower jaws, vertebrae and dorsal-fin rays of the teleost fish Xiphias gladius to analyse the skeletal architecture and ossification pattern. The analogies and differences among these segments were investigated to identify a common morphogenetic denominator of the bone tissue osteogenesis and modeling. The large fat glands in the proximal upper jaw and their relationship to the underlying cartilage (absent in the lower jaw) suggested that there is a mechanism that explains rostral overgrowth in the Xiphiidae and Istiophoriidae families. Thus far, the compact structure of the distal rostrum has been interpreted as being the result of remodeling. Nonetheless, no evidence of cutting cones, scalloped outer border of osteons and sequence of bright-dark bands in polarized light was observed in this study, suggesting a primary osteon texture formed by compacting of collagen matrix and mineral deposition in the fat stroma lacunae of the bone, but without being oriented in layers of the collagen fibrils. A similar histology also characterizes the circular structures present in the other examined segments of the skeleton. The early phases of fibrillogenesis carried out by fibroblast-like cells occurred farther from the already-calcified bone surface inside the fat stroma lacunae. The fibrillar matrix was compacted and underwent mineral deposition near the previously calcified bone surface. This pattern of collagen matrix synthesis and calcification was different from that of mammalian osteoblasts, especially concerning the ability to build a lacuno-canalicular system among cells. Necrosis or apoptosis of the latter and refilling of the empty lacunae by mineral deposits might explain the anosteocytic bone formation.
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Affiliation(s)
- Ugo E. Pazzaglia
- Department of Specialità Chirurgiche, Scienze radiologiche e Sanità PubblicaUniversity of BresciaBresciaItaly
| | | | - Marco Saroglia
- Department of Biotecnologie e Scienze della VitaUniversity of InsubriaVareseItaly
| | - Renata Manconi
- Department of Veterinary Medicine, Zoology LabUniversity of SassariSassariItaly
| | - Guido Zarattini
- Department of Specialità Chirurgiche, Scienze radiologiche e Sanità PubblicaUniversity of BresciaBresciaItaly
| | - Mario Raspanti
- Department of Medicina e ChirurgiaUniversity of InsubriaVareseItaly
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99
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Frost CR, Goss GG. Absence of some cytochrome P450 (CYP) and hydroxysteroid dehydrogenase (HSD) enzymes in hagfishes. Gen Comp Endocrinol 2022; 323-324:114045. [PMID: 35472318 DOI: 10.1016/j.ygcen.2022.114045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 04/19/2022] [Accepted: 04/21/2022] [Indexed: 11/20/2022]
Abstract
Corticosteroids are synthesized from cholesterol by steroidogenic enzyme catalysts belonging to two main families: the cytochrome p450s (CYPs) and hydroxysteroid dehydrogenases (HSDs). The action of these steroidogenic enzymes allows the genesis of the terminal active corticosteroids 11-deoxycortisol (S), 1ɑ-hydroxycorticosterone (1α-OH-B), or cortisol in different fish species. However, for Cyclostomes like hagfishes, the terminal corticosteroid is still undefined. In this study, we examined the presence or absence of CYPs and HSDs as traits in fishes to gain insight about the primary corticosteroid synthesis pathways of the hagfishes. We used published cytochrome c oxidase I (COXI) amino acid sequences to construct a phylogeny of fishes and then mapped the CYPs and HSDs as morphological traits onto the tree to predict the ancestral character states through ancestral character reconstruction (ACR). There is a clear phylogenetic signal for CYP (i.e., CYP11a1, 17, 21, and 11b) and HSD (i.e., 11-βHSD and 3β-HSD) derivatives of interest throughout the more derived fishes. Using trait-based ACR, we also found that hagfishes possess genes for 3β-HSD, CYP11a1, CYP17, and CYP21. Importantly, the presence of CYP21 implies that hagfish can synthesize 11-deoxycorticosterone (11-DOC) and S. Previous research demonstrated that despite hagfish having CYP21, neither 11-DOC nor S could be detected in hagfish. This discrepancy between the presence of steroidogenic enzymes and products brings into question the expression and/or function of CYP21 in hagfishes.
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Affiliation(s)
- Christiana R Frost
- Department of Biological Sciences, University of Alberta, CW405, Biological Sciences Building, Edmonton, AB T6G 2E9, Canada.
| | - Greg G Goss
- Department of Biological Sciences, University of Alberta, CW405, Biological Sciences Building, Edmonton, AB T6G 2E9, Canada.
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100
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Shedko SV. Molecular Dating of Phylogeny of Sturgeons (Acipenseridae) Based on Total Evidence Analysis. RUSS J GENET+ 2022. [DOI: 10.1134/s1022795422060084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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