51
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Quantitative phase imaging techniques for the study of cell pathophysiology: from principles to applications. SENSORS 2013; 13:4170-91. [PMID: 23539026 PMCID: PMC3673078 DOI: 10.3390/s130404170] [Citation(s) in RCA: 229] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/19/2013] [Revised: 03/11/2013] [Accepted: 03/18/2013] [Indexed: 11/17/2022]
Abstract
A cellular-level study of the pathophysiology is crucial for understanding the mechanisms behind human diseases. Recent advances in quantitative phase imaging (QPI) techniques show promises for the cellular-level understanding of the pathophysiology of diseases. To provide important insight on how the QPI techniques potentially improve the study of cell pathophysiology, here we present the principles of QPI and highlight some of the recent applications of QPI ranging from cell homeostasis to infectious diseases and cancer.
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52
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Jang J, Lim J, Yu H, Choi H, Ha J, Park JH, Oh WY, Jang W, Lee S, Park Y. Complex wavefront shaping for optimal depth-selective focusing in optical coherence tomography. OPTICS EXPRESS 2013; 21:2890-902. [PMID: 23481747 DOI: 10.1364/oe.21.002890] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
We report on an approach to exploit multiple light scattering by shaping the incident wavefront in optical coherence tomography (OCT). Most of the reflected signal from biological tissue consists of multiply scattered light, which is regarded as noise in OCT. A digital mirror device (DMD) is utilized to shape the incident wavefront such that the maximal energy is focused at a specific depth in a highly scattering sample using a coherence-gated reflectance signal as feedback. The proof-of-concept experiment demonstrates that this approach enhances depth-selective focusing in the presence of optical inhomogeneity, and thus extends the penetration depth in spectral domain-OCT (SD-OCT).
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Affiliation(s)
- Jaeduck Jang
- Dept. of Physics, Korea Advanced Institute of Science. and Technology, Daejeon, 305-701 South Korea
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53
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Uzan A, Rivenson Y, Stern A. Speckle denoising in digital holography by nonlocal means filtering. APPLIED OPTICS 2013; 52:A195-200. [PMID: 23292394 DOI: 10.1364/ao.52.00a195] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
We demonstrate the effectiveness of the nonlocal means (NLM) filter for speckle denoising in digital holography. The speckle noise adapted version of the NLM filter is compared with other common speckle denoising filters and is found to give better visual and quantitative results.
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Affiliation(s)
- Amitai Uzan
- Department of Electro-Optical Engineering, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
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54
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Choi Y, Yoon C, Kim M, Yang TD, Fang-Yen C, Dasari RR, Lee KJ, Choi W. Scanner-free and wide-field endoscopic imaging by using a single multimode optical fiber. PHYSICAL REVIEW LETTERS 2012; 109:203901. [PMID: 23215488 PMCID: PMC4001713 DOI: 10.1103/physrevlett.109.203901] [Citation(s) in RCA: 209] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2012] [Revised: 09/24/2012] [Indexed: 05/06/2023]
Abstract
A single multimode fiber is considered an ideal optical element for endoscopic imaging due to the possibility of direct image transmission via multiple spatial modes. However, the wave distortion induced by the mode dispersion has been a fundamental limitation. In this Letter, we propose a method for eliminating the effect of mode dispersion and therefore realize wide-field endoscopic imaging by using only a single multimode fiber with no scanner attached to the fiber. Our method will potentially revolutionize endoscopy in various fields encompassing medicine and industry.
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Affiliation(s)
- Youngwoon Choi
- Department of Physics, Korea University, Seoul 136-701, Korea
| | | | - Moonseok Kim
- Department of Physics, Korea University, Seoul 136-701, Korea
| | | | - Christopher Fang-Yen
- Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Ramachandra R. Dasari
- G. R. Harrison Spectroscopy Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Kyoung Jin Lee
- Department of Physics, Korea University, Seoul 136-701, Korea
| | - Wonshik Choi
- Department of Physics, Korea University, Seoul 136-701, Korea
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55
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Micó V, Ferreira C, García J. Surpassing digital holography limits by lensless object scanning holography. OPTICS EXPRESS 2012; 20:9382-95. [PMID: 22535027 DOI: 10.1364/oe.20.009382] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
We present lensless object scanning holography (LOSH) as a fully lensless method, capable of improving image quality in reflective digital Fourier holography, by means of an extremely simplified experimental setup. LOSH is based on the recording and digital post-processing of a set of digital lensless holograms and results in a synthetic image with improved resolution, field of view (FOV), signal-to-noise ratio (SNR), and depth of field (DOF). The superresolution (SR) effect arises from the generation of a synthetic aperture (SA) based on the linear movement of the inspected object. The same scanning principle enlarges the object FOV. SNR enhancement is achieved by speckle suppression and coherent artifacts averaging due to the coherent addition of the multiple partially overlapping bandpass images. And DOF extension is performed by digital refocusing to different object's sections. Experimental results showing an impressive image quality improvement are reported for a one-dimensional reflective resolution test target.
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Affiliation(s)
- Vicente Micó
- Departamento de Óptica, Universidad de Valencia, C/ Doctor Moliner 50, 46100 Burjassot, Spain.
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56
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Jang Y, Jang J, Park Y. Dynamic spectroscopic phase microscopy for quantifying hemoglobin concentration and dynamic membrane fluctuation in red blood cells. OPTICS EXPRESS 2012; 20:9673-81. [PMID: 22535058 DOI: 10.1364/oe.20.009673] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
We report a technique for simultaneous label-free quantification of cytoplasmic hemoglobin Hb concentration and dynamic membrane fluctuation in individual red blood cells (RBCs). Spectroscopic phase microscopy equipped with three different coherent laser sources and a color detector records three wavelength-dependent quantitative phase images in a single shot of a color-coded hologram. Using molecular specific dispersion, we demonstrate the extraction of Hb concentration and the dynamic membrane fluctuation from individual RBCs.
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Affiliation(s)
- Yunhun Jang
- Department of Physics, Korea Advanced Institute of Science and Technology, Daejeon, 305-701 South Korea
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57
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Debnath SK, Park Y. Real-time quantitative phase imaging with a spatial phase-shifting algorithm. OPTICS LETTERS 2011; 36:4677-9. [PMID: 22139281 DOI: 10.1364/ol.36.004677] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
This Letter reports on the use of a spatial phase-shifting algorithm in a fast, straightforward method of real-time quantitative phase imaging. The computation time for phase extraction is five times faster than a Fourier transform and twice as fast as a Hilbert transform. The fact that the phase extraction from an interferogram of 512 × 512 pixels takes less than 8.93 ms with a typical desktop computer suggests the proposed method can be readily applied to high-speed dynamic quantitative phase imaging. The proposed method of quantitative phase imaging is effective and sufficiently general for application to the dynamic phenomena of biological samples.
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Affiliation(s)
- Sanjit K Debnath
- Department of Physics, Korea Advanced Institute of Science and Technology (KAIST), 373-1 Guseong-dong, Yuseong-gu, Daejeon 305-701, South Korea
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58
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Choi Y, Yang TD, Lee KJ, Choi W. Full-field and single-shot quantitative phase microscopy using dynamic speckle illumination. OPTICS LETTERS 2011; 36:2465-7. [PMID: 21725446 DOI: 10.1364/ol.36.002465] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
We developed an off-axis quantitative phase microscopy that works for a light source with an extremely short spatial coherence length in order to reduce the diffraction noise and enhance the spatial resolution. A dynamic speckle wave whose coherence length is 440 nm was used as an illumination source. To implement an off-axis interferometry for a source of low spatial coherence, a diffraction grating was inserted in the reference beam path. In doing so, an oblique illumination was generated without rotation of the wavefront, which leads to a full-field and single-shot phase recording with improved phase sensitivity of more than a factor of 10 in comparison with coherent illumination. The spatial resolution, both laterally and axially, and the depth selectivity are significantly enhanced due to the wide angular spectrum of the speckle wave. We applied our method to image the dynamics of small intracellular particles in live biological cells. With enhanced phase sensitivity and speed, the proposed method will serve as a useful tool to study the dynamics of biological specimens.
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Affiliation(s)
- Youngwoon Choi
- Department of Physics, Korea University, Seoul 136-701, Korea
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59
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Pan F, Xiao W, Liu S, Wang F, Rong L, Li R. Coherent noise reduction in digital holographic phase contrast microscopy by slightly shifting object. OPTICS EXPRESS 2011; 19:3862-9. [PMID: 21369211 DOI: 10.1364/oe.19.003862] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
A method to reduce coherent noise in digital holographic phase contrast microscopy is proposed. By slightly shifting the specimen, a series of digital holograms with different coherent noise patterns is recorded. Each hologram is reconstructed individually, while the different phase tilts of the reconstructed complex amplitudes due to the specimen shifts are corrected in the hologram plane by using numerical parametric lens method. Afterward, the lateral displacements of the phase maps from different holograms are compensated in the image plane by using digital image registration method. Thus, all phase images have same distribution, but uncorrelated coherent noise patterns. By a proper averaging procedure, the coherent noise of phase contrast image is reduced significantly. The experimental results are given to confirm the proposed method.
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Affiliation(s)
- Feng Pan
- School of Instrumentation Science & Optoelectronics Engineering, Beihang University, Beijing, China.
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60
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Choi K, Horisaki R, Hahn J, Lim S, Marks DL, Schulz TJ, Brady DJ. Compressive holography of diffuse objects. APPLIED OPTICS 2010; 49:H1-10. [PMID: 21124522 DOI: 10.1364/ao.49.0000h1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
We propose an estimation-theoretic approach to the inference of an incoherent 3D scattering density from 2D scattered speckle field measurements. The object density is derived from the covariance of the speckle field. The inference is performed by a constrained optimization technique inspired by compressive sensing theory. Experimental results demonstrate and verify the performance of our estimates.
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Affiliation(s)
- Kerkil Choi
- The Fitzpatrick Institute for Photonics, Department of Electrical and Computer Engineering, Duke University, Durham, North Carolina 27708, USA
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61
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Xin Z, Dobson K, Shinoda Y, Poon TC. Sectional image reconstruction in optical scanning holography using a random-phase pupil. OPTICS LETTERS 2010; 35:2934-2936. [PMID: 20808374 DOI: 10.1364/ol.35.002934] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
A method is presented for the reconstruction of sectional images without the out-of-focus haze from a hologram generated by optical scanning holography. A random-phase pupil is adopted in the process of recovering individual sections from the hologram. The main idea of this approach is to recover a prescribed section while dispersing the energy from other sections into "specklelike patterns," which can be eliminated subsequently by averaging of multiple section images.
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Affiliation(s)
- Zhou Xin
- Department of Opto-Electronics Science and Technology, Sichuan University, Chengdu 610065, China.
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62
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Jeong K, Turek JJ, Nolte DD. Speckle fluctuation spectroscopy of intracellular motion in living tissue using coherence-domain digital holography. JOURNAL OF BIOMEDICAL OPTICS 2010; 15:030514. [PMID: 20614997 DOI: 10.1117/1.3456369] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Dynamic speckle from 3-D coherence-gated optical sections provides a sensitive label-free measure of cellular activity up to 1 mm deep in living tissue. However, specificity to cellular functionality has not previously been demonstrated. In this work, we perform fluctuation spectroscopy on dynamic light scattering captured using coherence-domain digital holography to obtain the spectral response of tissue that is perturbed by temperature, osmolarity, and antimitotic cytoskeletal drugs. Different perturbations induce specific spectrogram response signatures that can show simultaneous enhancement and suppression in different spectral ranges.
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63
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Park Y, Yamauchi T, Choi W, Dasari R, Feld MS. Spectroscopic phase microscopy for quantifying hemoglobin concentrations in intact red blood cells. OPTICS LETTERS 2009; 34:3668-70. [PMID: 19953156 PMCID: PMC2848941 DOI: 10.1364/ol.34.003668] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
We report a practical method for label-free quantification of specific molecules using spectroscopic imaging of sample-induced phase shifts. Diffraction phase microscopy equipped with various wavelengths of light source is used to record wavelength-dependent phase images. We first perform dispersion measurements on pure solutions of single molecular species present in the cells, such as albumin and hemoglobin (Hb). With this prior calibration of molecular specific dispersion, we demonstrate the extraction of Hb concentration from individual human red blood cells. The end point of this study is noninvasive monitoring of physiological states of intact living cells.
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Affiliation(s)
- YongKeun Park
- George R. Harrison Spectroscopy Laboratory, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
- Department of Health Science & Technology, Harvard-MIT, 77 Massachusetts Avenue, Cambridge MA 02139, USA
| | - Toyohiko Yamauchi
- George R. Harrison Spectroscopy Laboratory, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
- Hamamatsu Photonics K. K., 5000 Hirakuchi, Hamakita, Shizuoka 434-8601 Japan
| | - Wonshik Choi
- George R. Harrison Spectroscopy Laboratory, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
- Department of Physics, Korea University, Seoul 136-701, Korea
- Corresponding author:
| | - Ramachandra Dasari
- George R. Harrison Spectroscopy Laboratory, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
| | - Michael S. Feld
- George R. Harrison Spectroscopy Laboratory, MIT, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
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