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Ouellet M, Voyer N, Auger M. Membrane interactions and dynamics of a 21-mer cytotoxic peptide: a solid-state NMR study. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2009; 1798:235-43. [PMID: 19703408 DOI: 10.1016/j.bbamem.2009.07.029] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2009] [Revised: 07/06/2009] [Accepted: 07/30/2009] [Indexed: 11/29/2022]
Abstract
We have investigated the membrane interactions and dynamics of a 21-mer cytotoxic model peptide that acts as an ion channel by solid-state NMR spectroscopy. To shed light on its mechanism of membrane perturbation, (31)P and (2)H NMR experiments were performed on 21-mer peptide-containing bicelles. (31)P NMR results indicate that the 21-mer peptide stabilizes the bicelle structure and orientation in the magnetic field and perturbs the lipid polar head group conformation. On the other hand, (2)H NMR spectra reveal that the 21-mer peptide orders the lipid acyl chains upon binding. (15)N NMR experiments performed in DMPC bilayers stacked between glass plates also reveal that the 21-mer peptide remains at the bilayer surface. (15)N NMR experiments in perpendicular DMPC bicelles indicate that the 21-mer peptide does not show a circular orientational distribution in the bicelle planar region. Finally, (13)C NMR experiments were used to study the 21-mer peptide dynamics in DMPC multilamellar vesicles. By analyzing the (13)CO spinning sidebands, the results show that the 21-mer peptide is immobilized upon membrane binding. In light of these results, we propose a model of membrane interaction for the 21-mer peptide where it lies at the bilayer surface and perturbs the lipid head group conformation.
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Affiliation(s)
- Marise Ouellet
- Département de Chimie, PROTEO (Regroupement Québécois de Recherche sur la Fonction, la Structure et l'Ingénierie des Protéines), CERMA (Centre de Recherche sur les Matériaux Avancés), Université Laval, Québec, Québec, Canada G1V 0A6
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Soong R, Majonis D, Macdonald PM. Size of bicelle defects probed via diffusion nuclear magnetic resonance of PEG. Biophys J 2009; 97:796-805. [PMID: 19651038 DOI: 10.1016/j.bpj.2009.05.034] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2008] [Revised: 05/27/2009] [Accepted: 05/28/2009] [Indexed: 11/16/2022] Open
Abstract
Diffusion of various poly(ethylene glycol) (PEG) tracers of well-defined molecular weight and narrow polydispersity confined within the aqueous interstices between positively magnetically aligned bicelles was measured using pulsed-field-gradient (1)H nuclear magnetic resonance. The bicelles consisted of mixtures of dimyristoylphosphatidylcholine (DMPC), dimyristoylphosphatidylglycerol (DMPG), and dihexanoylphosphatidylcholine (DHPC) in the molar ratios q = [100 DMPC +5 DMPG]/[DHPC] = 3.5, 4.5, and 5.5, to which Yb(3+) had been added in the ratio 1:75 Yb(3+)/phospholipid. The field gradients were applied such that diffusion was measured in the direction parallel to the normal to the bicelles' planar regions, thereby rendering the experiment sensitive to the ability of PEG to traverse lamellar defects within the bicelles. The pulsed-field-gradient nuclear magnetic resonance diffusive intensity decays were diffusion-time-independent in all cases, with diffusive displacements corresponding to many hundreds of bicellar lamellae. This permitted a description of such diffusive decays in terms of a mean behavior involving a combination of straight obstruction effects common to all PEG, with hindrance to diffusion proportional to the relative size of a given PEG with respect to the size of the lamellar defects. Across the range of PEG molecular weights (200-4600) and bicelle compositions examined, the apparent radial dimension of the lamellar defects decreased from 165 A with q = 3.5 to 125 A with q = 5.5. This is opposite to the trend predicted from static geometric models of either bicelle disks or perforated lamellae. Qualitatively, the observed trend suggests that mobility of the obstructions to diffusion will need to be considered to reconcile these differences.
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Affiliation(s)
- Ronald Soong
- Department of Chemistry, University of Toronto, Toronto, Ontario, Canada
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Diller A, Loudet C, Aussenac F, Raffard G, Fournier S, Laguerre M, Grélard A, Opella SJ, Marassi FM, Dufourc EJ. Bicelles: A natural 'molecular goniometer' for structural, dynamical and topological studies of molecules in membranes. Biochimie 2009; 91:744-51. [PMID: 19248817 PMCID: PMC2899883 DOI: 10.1016/j.biochi.2009.02.003] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2008] [Accepted: 02/13/2009] [Indexed: 10/21/2022]
Abstract
Major biological processes occur at the biological membrane. One of the great challenges is to understand the function of chemical or biological molecules inside the membrane; as well of those involved in membrane trafficking. This requires obtaining a complete picture of the in situ structure and dynamics as well as the topology and orientation of these molecules in the membrane lipid bilayer. These led to the creation of several innovative models of biological membranes in order to investigate the structure and dynamics of amphiphilic molecules, as well as integral membrane proteins having single or multiple transmembrane segments. Because the determination of the structure, dynamics and topology of molecules in membranes requires a macroscopic alignment of the system, a new membrane model called 'bicelles' that represents a crossover between lipid vesicles and classical micelles has become very popular due to its property of spontaneous self-orientation in magnetic fields. In addition, crucial factors involved in mimicking natural membranes, such as sample hydration, pH and salinity limits, are easy to control in bicelle systems. Bicelles are composed of mixtures of long chain (14-18 carbons) and short chain phospholipids (6-8 carbons) hydrated up to 98% with buffers and may adopt various morphologies depending on lipid composition, temperature and hydration. We have been developing bicelle systems under the form of nano-discs made of lipids with saturated or biphenyl-containing fatty acyl chains. Depending on the lipid nature, these membranous nano-discs may be macroscopically oriented with their normal perpendicular or parallel to the magnetic field, providing a natural 'molecular goniometer' for structural and topological studies, especially in the field of NMR. Bicelles can also be spun at the magic angle and lead to the 3D structural determination of molecules in membranes.
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Affiliation(s)
- Anna Diller
- CBMN UMR 5248, CNRS, Université Bordeaux, ENITAB, IECB, 2, rue Robert Escarpit, 33607 Pessac, France
| | - Cécile Loudet
- The Burnham Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
| | | | - Gérard Raffard
- RMSB UMR 5536, CNRS, Université Bordeaux, Bordeaux, France
| | - Sylvie Fournier
- CBMN UMR 5248, CNRS, Université Bordeaux, ENITAB, IECB, 2, rue Robert Escarpit, 33607 Pessac, France
| | - Michel Laguerre
- CBMN UMR 5248, CNRS, Université Bordeaux, ENITAB, IECB, 2, rue Robert Escarpit, 33607 Pessac, France
| | - Axelle Grélard
- CBMN UMR 5248, CNRS, Université Bordeaux, ENITAB, IECB, 2, rue Robert Escarpit, 33607 Pessac, France
| | - Stanley J. Opella
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0307, USA
| | | | - Erick J. Dufourc
- CBMN UMR 5248, CNRS, Université Bordeaux, ENITAB, IECB, 2, rue Robert Escarpit, 33607 Pessac, France
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Abstract
Artificial biomembrane mimetic model systems are used to characterize peptide-membrane interactions using a wide range of methods. Herein, we present the use of selected membrane model systems to investigate peptide-membrane interactions. We describe methods for the preparation of various membrane mimetic media. Our applications will focus on small unilamellar vesicles (SUVs) and large unilamellar vesicles (LUVs) as well as on media more suited for nuclear magnetic resonance (NMR) techniques, micelles, and fast-tumbling two-component bilayered micelles (bicelles).
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Affiliation(s)
- Lena Mäler
- Center for Biomembrane Research, Department of Biochemistry and Biophysics, Stockholm University, SE-106 91 Stockholm, Sweden
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Faham S, Ujwal R, Abramson J, Bowie JU. Chapter 5 Practical Aspects of Membrane Proteins Crystallization in Bicelles. CURRENT TOPICS IN MEMBRANES 2009. [DOI: 10.1016/s1063-5823(09)63005-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Lind J, Nordin J, Mäler L. Lipid dynamics in fast-tumbling bicelles with varying bilayer thickness: Effect of model transmembrane peptides. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2008; 1778:2526-34. [DOI: 10.1016/j.bbamem.2008.07.010] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2008] [Revised: 07/15/2008] [Accepted: 07/15/2008] [Indexed: 10/21/2022]
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Abstract
Magnetically aligned bicelles are an excellent medium for structure determination of isotopically labeled membrane proteins by solid-state NMR spectroscopy. Bicelles are a mixture of long- and short-chain phospholipids that form bilayers in an aqueous medium and align spontaneously in a high magnetic field, for example that of an NMR spectrometer with a 1H resonance frequency between 400 and 900 MHz. Importantly, membrane proteins have been shown to be fully functional in these fully hydrated, planar bilayers under physiological conditions of pH and temperature. We describe a protocol for preparing stable protein-containing bicelles samples that yield high-resolution solid-state NMR spectra. Depending on the details of the protein and its behavior in the lipids, the time for sample preparation can vary from a few hours to several days.
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Affiliation(s)
- Anna A De Angelis
- Department of Chemistry and Biochemistry, University of California at San Diego, 9500 Gilman Drive, La Jolla, California 92037, USA
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Dürr UH, Waskell L, Ramamoorthy A. The cytochromes P450 and b5 and their reductases—Promising targets for structural studies by advanced solid-state NMR spectroscopy. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2007; 1768:3235-59. [DOI: 10.1016/j.bbamem.2007.08.007] [Citation(s) in RCA: 105] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2007] [Accepted: 08/08/2007] [Indexed: 02/02/2023]
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Pan J, Tristram-Nagle S, Kucerka N, Nagle JF. Temperature dependence of structure, bending rigidity, and bilayer interactions of dioleoylphosphatidylcholine bilayers. Biophys J 2007; 94:117-24. [PMID: 17827241 PMCID: PMC2134881 DOI: 10.1529/biophysj.107.115691] [Citation(s) in RCA: 277] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
X-ray diffuse scattering was measured from oriented stacks and unilamellar vesicles of dioleoylphosphatidylcholine lipid bilayers to obtain the temperature dependence of the structure and of the material properties. The area/molecule, A, was 75.5 A(2) at 45 degrees C, 72.4 A(2) at 30 degrees C, and 69.1 A(2) at 15 degrees C, which gives the area expansivity alpha(A) = 0.0029/deg at 30 degrees C, and we show that this value is in excellent agreement with the polymer brush theory. The bilayer becomes thinner with increasing temperature; the contractivity of the hydrocarbon portion was alpha(Dc) = 0.0019/deg; the difference between alpha(A) and alpha(Dc) is consistent with the previously measured volume expansivity alpha(Vc) = 0.0010/deg. The bending modulus K(C) decreased as exp(455/T) with increasing T (K). Our area compressibility modulus K(A) decreased with increasing temperature by 5%, the same as the surface tension of dodecane/water, in agreement again with the polymer brush theory. Regarding interactions between bilayers, the compression modulus B as a function of interbilayer water spacing D'(W) was found to be nearly independent of temperature. The repulsive fluctuation pressure calculated from B and K(C) increased with temperature, and the Hamaker parameter for the van der Waals interaction was nearly independent of temperature; this explains why the fully hydrated water spacing, D'(W), that we obtain from our structural results increases with temperature.
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Affiliation(s)
- Jianjun Pan
- Department of Physics, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA
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