The relationship between mitochondrial function and residual feed intake in Angus steers1

Feed efficiency and meat quality of crossbred beef heifers classified according to residual feed intake

AbstractThis study aimed to evaluate feed efficiency and meat quality of 31 three-crossbred beef heifers during 84 days in a feedlot system. A 60:40 concentrate and sorghum silage ration on DM basis (ME = 2.73Mcal/kg of DM, CP = 11.90% DM) was fed ad libitum. Based on residual feed intake (RFI) calculations, the heifers were ranked in three groups of feed efficiency: High RFI (average mean = 0.776; n = 9), medium RFI (average mean = -0.010; n = 11), and low RFI (average mean = - 0.624; n = 11). High RFI heifers consumed 4.56% more DM per day than low RFI heifers (P <0.05). The ADG did not differ (P> 0.05) among RFI groups (1.40kg/day). No differences (P>0.05) were detected for digestibility of the nutrients: DM (64.00%), CP (60.01%), crude fat (72.90%), NDF (54.80%) and non-fibrous carbohydrate (NFC) (78.91%). There were no differences between low and high RFI groups for slaughter weight (475.00 vs. 479.55kg), hot carcass weight (259.09 vs. 261.44kg), Longissimus dorsi (LD) area (69.02 vs. 68.11 cm2), back-fat thickness (5.74 vs. 6.26 cm), shear force (5.45 vs. 5.19kg), sensorial traits of LD muscle, LD color (intensities L=40.47 a*=24.74 and b*=16.13) or commercial cuts yield. Low RFI heifers presented similar meat quality and carcass traits as high RFI heifers, however low RFI heifers consumed less DM (kg/d).

Relationship between Liver Mitochondrial Respiration and Proton Leak in Low and High RFI Steers from Two Lineages of RFI Angus Bulls

The objective of this research is to evaluate liver mitochondrial oxygen consumption and proton leak kinetics in progeny from two lineages of Angus bulls with high and low residual feed intake (RFI). Two Angus bulls were selected based on results from a genetic test for RFI and were used as sires. Eight offspring at 10-11 months of age from each sire were housed in individual pens for 70–105 days following a diet adaptation period of 14 days. Progeny of the low RFI sire had 0.57 kg/d (P = 0.05) lower average RFI than progeny of the high RFI sire. There was no difference in dry matter intake between low and high RFI steers, but low RFI steers gained more body weight (P = 0.02) and tended to have higher average daily gains (P = 0.07). State 3 and State 4 respiration, RCR, and proton leak did not differ between high and low RFI steers (P = 0.96, P = 0.81, P = 0.93, and P = 0.88, resp.). Therefore, the increase in bodyweight gain which distinguished the low RFI steers from the high RFI steers may be associated with other metabolic mechanisms that are not associated with liver mitochondrial respiration and proton leak kinetics.

Transcriptomic analysis to elucidate the molecular mechanisms that underlie feed efficiency in meat-type chickens

Feed efficiency phenotypes defined by genotypes or gene markers are unknown. To date, there are only limited studies on global gene expression profiling on feed efficiency. The objective of this study was to identify genes and pathways associated with residual feed intake (RFI) through transcriptional profiling of duodenum at two different ages in a chicken population divergently selected for low (LRFI) or high (HRFI) RFI. The global gene expression differences in LRFI and HRFI were assessed by the Affymetrix GeneChip(®) Chicken Genome Array and RT-PCR using duodenal tissue on days 35 and 42. The Ingenuity Pathway Analysis program was used to identify canonical and gene network pathways associated with RFI. A global view of gene expression differences between LRFI and HRFI suggest that RFI can be explained by differences in cell division, growth, proliferation and apoptosis, protein synthesis, lipid metabolism, and molecular transport of cellular molecules. Chickens selected for improved RFI achieve efficiency by reducing feed intake with a nominal or no change in weight gain by either up-regulating CD36, PPARα, HMGCS2, GCG or down-regulating PCSK2, CALB1, SAT1, and SGK1 genes within the lipid metabolism, small molecule biochemistry, molecular transport, cell death, and protein synthesis molecular and cellular functions. Chickens selected for reduced RFI via reduced feed intake with no change in weight gain achieve feed efficiency for growth by the up-regulation of genes that reduce appetite with increased cellular oxidative stress, prolonged cell cycle, DNA damage, and apoptosis in addition to increased oxidation of dietary fat and efficient fatty acids transported from the intestines.

Development and application of the adverse outcome pathway framework for understanding and predicting chronic toxicity: II. A focus on growth impairment in fish

Adverse outcome pathways (AOPs) organize knowledge on the progression of toxicity through levels of biological organization. By determining the linkages between toxicity events at different levels, AOPs lay the foundation for mechanism-based alternative testing approaches to hazard assessment. Here, we focus on growth impairment in fish to illustrate the initial stages in the process of AOP development for chronic toxicity outcomes. Growth is an apical endpoint commonly assessed in chronic toxicity tests for which a replacement is desirable. Based on several criteria, we identified reduction in food intake to be a suitable key event for initiation of middle-out AOP development. To start exploring the upstream and downstream links of this key event, we developed three AOP case studies, for pyrethroids, selective serotonin reuptake inhibitors (SSRIs) and cadmium. Our analysis showed that the effect of pyrethroids and SSRIs on food intake is strongly linked to growth impairment, while cadmium causes a reduction in growth due to increased metabolic demands rather than changes in food intake. Locomotion impairment by pyrethroids is strongly linked to their effects on food intake and growth, while for SSRIs their direct influence on appetite may play a more important role. We further discuss which alternative tests could be used to inform on the predictive key events identified in the case studies. In conclusion, our work demonstrates how the AOP concept can be used in practice to assess critically the knowledge available for specific chronic toxicity cases and to identify existing knowledge gaps and potential alternative tests.

Effects of phenotypic residual feed intake on response to a glucose tolerance test and gene expression in the insulin signaling pathway in longissimus dorsi in beef cattle

The objectives of this study were to determine the insulinogenic response to an intravenous glucose tolerance test (GTT) and examine gene expression profiles in the insulin signaling pathway (ISP) in beef animals of differing phenotypic residual feed intake (RFI). Two experiments were conducted. In Exp. 1, a total of 39 Simmental heifers, over 2 yr (yr 1, n = 22, and yr 2, n = 17; mean initial BW = 472 kg [SD = 52.4 kg]), were offered grass silage ad libitum for 104 d. Heifers were subjected to a GTT on d 8 and 65 of the RFI measurement period in yr 1 and 2, respectively. Concentrations of plasma glucose and insulin were measured at -45, -30, -15, 0, 5, 10, 15, 20, 30, 45, 60, 90, 120, 150, and 180 min relative to glucose infusion (0 min). In Exp. 2, a total of 67 Simmental bulls, over 3 yr (yr 1, n = 20; yr 2, n = 33; and yr 3, n = 14; mean initial BW = 431 kg [SD = 63.7 kg]), were offered concentrates ad libitum for 105 d. Biopsies of LM were harvested during the RFI measurement period (yr 1, d 49 and 91; yr 2, d 52 and 92; and yr 3, d 50 and 92). The residuals of the regression of DMI on ADG, midtest metabolic BW (BW(0.75)), and the fixed effect of year, using all animals, were used to compute individual RFI coefficients. Animals were ranked on RFI and assigned to high (inefficient), medium, or low groupings by dividing them into terciles, resulting in 13 heifers and 22, 23, and 22 bulls in their respective RFI groups. In Exp. 1, data from 13 heifers from each of the high- and low-RFI groups, and in Exp. 2, data from the 15 highest and 15 lowest ranking bulls on RFI are reported. In Exp. 1, glucose and insulin response and area under the response curve for glucose and insulin were similar (P > 0.05) between high- and low-RFI heifers. In Exp. 2, no differences (P > 0.05) were found for mRNA expression of 22 genes of the ISP in muscle tissue; however, expression of the transcription factor SREBP1c tended to be positively correlated (r = 0.25, P = 0.07) with RFI. Expression of GLUT4, INPPL1, and SHC increased (P < 0.05) over time, while there was no effect of sample time for any other genes measured. Collectively, these results suggest that insulin response, sensitivity, and associated expression of genes in the ISP within muscle tissue are not contributory factors to variation in RFI. However, further examination of target genes of SREBP1c, which is involved in lipogenesis, may explain some of the biochemical processes underlying variation in phenotypic RFI.

Relationships between residual feed intake and hepatic mitochondrial function in growing beef cattle

The objective of this study was to evaluate the relationship between hepatic mitochondrial function and residual feed intake (RFI) in growing beef cattle. In Trial 1, RFI was measured in 29 Angus heifers (initial BW = 258.0 ± 24.9 kg) from divergent IGF-I selection lines created at the Eastern Agricultural Research Station (The Ohio State University) fed a grain-based diet (calculated ME = 2.85 Mcal/kg DM). In Trial 2, RFI was measured in 119 Santa Gertrudis steers (initial BW = 308.4 ± 28.1 kg) fed a roughage-based diet (calculated ME = 2.21 Mcal/kg DM). At the end of the RFI measurement period, cattle in Trial 1 (n = 7 low RFI and n = 7 high RFI) and in Trial 2 (n = 6 low RFI and n = 8 high RFI) with measures of RFI exceeding 0.5 (Trial 1) or 1.0 (Trial 2) SD from the mean RFI were selected to measure mitochondrial function. Overall ADG, DMI, and RFI were 1.19 ± 0.15, 9.31 ± 1.12, and 0.00 ± 0.63 kg/d and 0.83 ± 0.16, 9.48 ± 1.00, and 0.00 ± 0.86 kg/d in Trial 1 and 2, respectively. Cattle with low RFI consumed 13 and 24% less (P < 0.05) DM and had 14 and 56% greater (P < 0.05) G:F than cattle with high RFI in Trial 1 and 2, respectively, even though ADG and BW were similar (P > 0.10). In Trial 1, cattle with low RFI tended (P = 0.06) to have greater state 3 respiration rates than cattle with high RFI, but state 3 respiration rates were similar (P > 0.10) between cattle with low and high RFI in Trial 2. In both trials, cattle with low RFI had greater (P < 0.05) acceptor control ratios than their high RFI counterparts. The respiratory control ratio tended (P = 0.09) to be greater for cattle with low RFI compared with high RFI cattle in Trial 1, but no difference (P > 0.10) was observed in Trial 2. Proton-leak kinetics were similar (P > 0.05) between cattle with low and high RFI in both trials. These data suggest that ADP has greater control of oxidative phosphorylation in liver mitochondrial of cattle with low RFI compared to their high RFI counterparts.

Effect of residual feed intake on hypothalamic gene expression and meat quality in Angus-sired cattle grown during the hot season

The relationship between heat stress, meat quality, and residual feed intake (RFI) is unknown in growing steers. To address this issue, high RFI (HRFI) and low RFI (LRFI) individuals were compared by assessing RFI in 48 Angus-sired steers during a 70-d feeding trial conducted during July through September to identify steers with calculated RFI at least 2 SD apart. The association of RFI with indices of meat quality and expression of genes within hypothalamic and adipose tissue was then determined in LRFI and HRFI steers. While on test, feed intake was recorded daily with BW and hip heights recorded every 14 d. Ultrasound measurements of rib eye area (REA) and backfat (BF) were recorded initially and before harvest. Carcass and growth data were analyzed using a mixed model with RFI level (LRFI and HRFI) as the independent variable. The least square means for RFI were -1.2 and 0.99 kg DMI/d, respectively, for the LRFI and HRFI cohorts (P < 0.0001). Dry matter intake was higher for the HRFI individuals versus the LRFI steers (P < 0.0001) while on-test gain was not different (P < 0.95). Marbling score was greater in LRFI than HRFI steers (P < 0.05). However, there were no differences in REA (P < 0.53), BF (P < 0.65), yield grade (P < 0.24), or objective Hunter color measures between LRFI and HRFI steers indicating there was no consistent relationship between RFI and indices of meat quality. Hypothalamic neuropeptide Y (NPY), agouti related protein (AGRP), relaxin-3 (RLN3), melanocortin 3 receptor, and relaxin/insulin-like family peptide receptor 1 (RXFP1) mRNA were expressed 280, 185, 202, 183, and 163% greater, respectively (P < 0.01), while proopiomelanocortin (POMC) mRNA was expressed 42% lower in LRFI than HRFI animals (P < 0.05). Hypothalamic GnRH mRNA expression was 67% lower while gonadotropin inhibiting hormone (GnIH) mRNA was 209% higher in LRFI than HRFI animals (P < 0.01). Pituitary expression of FSHβ and LHβ correlated to hypothalamic GnRH levels (P < 0.05) indicating changes in gene expression within the hypothalamus had functional consequences. Leptin mRNA expression levels were not different between adipose tissue of LRFI or HRFI steers (P < 0.84). These data indicate that animals with superior RFI evaluated during warm conditions have higher expression of orexigenic neuropeptide genes independent of the expression of adipose-derived leptin. Furthermore, the gonadotropin axis may also influence feed efficiency under these conditions.

Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle

Background

This study was conducted to: (1) identify new SNPs for residual feed intake (RFI) and performance traits within candidate genes identified in a genome wide association study (GWAS); (2) estimate the proportion of variation in RFI explained by the detected SNPs; (3) estimate the effects of detected SNPs on carcass traits to avoid undesirable correlated effects on these economically important traits when selecting for feed efficiency; and (4) map the genes to biological mechanisms and pathways. A total number of 339 SNPs corresponding to 180 genes were tested for association with phenotypes using a single locus regression (SLRM) and genotypic model on 726 and 990 crossbred animals for feed efficiency and carcass traits, respectively.

Results

Strong evidence of associations for RFI were located on chromosomes 8, 15, 16, 18, 19, 21, and 28. The strongest association with RFI (P = 0.0017) was found with a newly discovered SNP located on BTA 8 within the ELP3 gene. SNPs rs41820824 and rs41821600 on BTA 16 within the gene HMCN1 were strongly associated with RFI (P = 0.0064 and P = 0.0033, respectively). A SNP located on BTA 18 within the ZNF423 gene provided strong evidence for association with RFI (P = 0.0028). Genomic estimated breeding values (GEBV) from 98 significant SNPs were moderately correlated (0.47) to the estimated breeding values (EBVs) from a mixed animal model. The significant (P < 0.05) SNPs (98) explained 26% of the genetic variance for RFI. In silico functional analysis for the genes suggested 35 and 39 biological processes and pathways, respectively for feed efficiency traits.

Conclusions

This study identified several positional and functional candidate genes involved in important biological mechanisms associated with feed efficiency and performance. Significant SNPs should be validated in other populations to establish their potential utilization in genetic improvement programs.

Residual feed intake studies in Angus-sired cattle reveal a potential role for hypothalamic gene expression in regulating feed efficiency

Mechanisms underlying variation in residual feed intake (RFI), a heritable feed efficiency measure, are poorly understood while the relationship between RFI and meat quality is uncertain. To address these issues, 2 divergent cohorts consisting of High (HRFI) and Low (LRFI) RFI individuals were created by assessing RFI in 48 Angus-sired steers during a 70 d feeding trial to identify steers with divergent RFI. The association of RFI with indices of meat quality and expression of genes within hypothalamic and adipose tissue was then determined in LRFI and HRFI steers. While on test, feed intake was recorded daily with BW and hip heights recorded at 14 d intervals. Ultrasound measurements of rib eye area (REA) and backfat (BF) were recorded initially and before harvest. Carcass and growth data were analyzed using a mixed model with RFI level (LRFI, HRFI) as the independent variable. The least-square means (lsmeans) for RFI were -1.25 and 1.51 for the LRFI and HRFI cohorts (P < .0001). Dry matter intake was higher for the HRFI individuals versus the LRFI steers (P < .0001) while on test BW gain was not different between the 2 groups (P < 0.73). There were no differences detected in marbling score (P < 0.93), BF (P < 0.61), REA (P < 0.15), yield grade (P < 0.85) or objective Hunter color measures between LRFI and HRFI steers indicating that there was no relationship between RFI and meat quality. Neuropeptide-Y (NPY), relaxin-3 (RLN3), melanocortin 4 receptor (MC4R), and GnRH mRNA expression was 64%, 59%, 58%, 86% lower (P < 0.05), respectively, while gonadotropin inhibiting hormone (GnIH) and pro-opiomelanocortin (POMC) mRNA expression was 198% and 350% higher (P < 0.01) in the arcuate nucleus of LRFI steers. Expression of agouti-related protein (AGRP), relaxin/insulin-like family peptide receptor 1 (RXFP1), and melanocortin 3 receptor mRNA was similar between LRFI and HRFI animals. Pituitary expression of FSHβ (P < 0.03) and LHβ (P < 0.01) was correlated to hypothalamic GnRH levels suggesting that changes in gene expression within the arcuate nucleus had functional consequences. Leptin mRNA expression was 245% higher in the adipose tissue of LRFI steers consistent with lower levels of NPY and higher expression of POMC in their hypothalami. These data support the hypothesis that differences in hypothalamic neuropeptide gene expression underlie variation in feed efficiency in steers while the gonadotropin axis may also influence feed efficiency.

Short Communication: Associations between chemical composition and physical properties of milk and colostrum with feed efficiency in beef cows

Montanholi, Y. R., Lam, S., Peripolli, V., Vander Voort, G. and Miller, S. P. 2013. Short Communication: Associations between chemical composition and physical properties of milk and colostrum with feed efficiency in beef cows. Can. J. Anim. Sci. 93: 487–492. Lactogenesis is an energetically demanding process influencing efficiency of feed utilization. Individual energetic expenditure variation may exist in this process and could be accessed through the properties of milk and colostrum in beef cows. Properties of both secretions were analyzed for fat, protein, and lactose contents. Freezing point and somatic cell count were determined in milk and specific gravity and total solids in colostrum. Associations between feed efficiency and milk freezing point, milk lactose content, and colostrum specific gravity were noticed. This link between milk and colostrum properties with feed efficiency could be considered for the improvement of feed efficiency.

Cell Biology Symposium: feed efficiency: mitochondrial function to global gene expression

Understanding the cellular basis of feed efficiency (FE) is instrumental to helping poultry and livestock industries continue to provide high-quality protein for an increasingly crowded world. To understand relationships of FE and gene expression, global RNA transcription was investigated in breast muscle obtained from a male broiler line fed the same diet and individually phenotyped for FE. In these studies, RNA samples obtained from broilers that exhibited either high FE (0.65 ± 0.01) or low FE (0.46 ± 0.01) were analyzed with an Agilent 44K chicken oligoarray. A 1.3-fold cutoff in expression (30% difference between groups) resulted in 782 genes that were differentially expressed (P < 0.05) in muscle between the high- and low-FE phenotypes. Ingenuity Pathway Analysis, an online software program, was used to identify genes, gene networks, and pathways associated with the phenotypic expression of FE. The results indicate that the high-FE phenotype exhibited increased expression of genes associated with 1) signal transduction pathways, 2) anabolic activities, and 3) energy-sensing and energy coordination activities, all of which would likely be favorable to cell growth and development. In contrast, the low-FE broiler phenotype exhibited upregulation of genes 1) associated with actin-myosin filaments, cytoskeletal architecture, and muscle fibers and 2) stress-related or stress-responsive genes. Because the low-FE broiler phenotype exhibits greater oxidative stress, it would appear that the low-FE phenotype is the product of inherent gene expression that is modulated by oxidative stress. The results of these studies begin to provide a comprehensive picture of gene expression in muscle, a major organ of energy demand in an animal, associated with phenotypic expression of FE.

Assessing feed efficiency in beef steers through feeding behavior, infrared thermography and glucocorticoids

A better understanding of the factors regulating feed efficiency and their potential as predictors of feed efficiency in cattle is needed. Therefore, the potential of three classes of traits, namely, feeding behavior characteristics: daily time at feeder (TF; min/day), time per meal (TM; min), meal size (MS; g DM), eating rate (ER; g DM/min), number of daily meals (NM) and daily visits to the feeder (VF); infrared (IR) thermography traits (°C): eye (EY), cheek (CK), snout (SN), ribs (RB) and hind area (HA); and glucocorticoid levels: fecal cortisol metabolites (FCM; ng/g) and plasma cortisol (PC; ng/ml) as predictors of efficiency were evaluated in 91 steers (436 ± 37 kg) over 2 years (Y1 = 46; Y2 = 45). Additionally, the individual traits of each of these three classes were combined to define three single traits. Individual daily feed intake of a corn silage and high-moisture corn-based diet was measured using an automated feeding system. Body weight and thermographs were taken every 28 days over a period of 140 days. Four productive performance traits were calculated: daily dry matter intake (DMI), average daily gain (ADG), feed to gain ratio (F : G) and residual feed intake (RFI). Steers were also classified into three RFI categories (low-, medium- and high-RFI). Among the feeding behavior characteristics, MS and ER were correlated with all efficiency traits (range: 0.26 to 0.75). Low-RFI (more efficient steers) had smaller MS, lower ER and fewer VF in comparison to high-RFI steers. Less efficient steers (high-RFI) performed more VF during the nocturnal period than more efficient steers. More efficient steers had lower CK and SN temperatures than less efficient steers (28.1°C v. 29.2°C and 30.0°C v. 31.2°C), indicating greater energetic efficiency for low-RFI steers. In terms of glucocorticoids, PC was not correlated with efficiency traits. In contrast, more efficient steers had higher FCM in comparison to less efficient steers (51.1 v. 31.2 ng/g), indicating that a higher cortisol baseline is related to better feed efficiency. The overall evaluation of the three classes of traits revealed that feeding behavior, IR thermography and glucocorticoids accounted for 18%, 59% and 7% of the total variation associated with RFI, respectively. These classes of traits have usefulness in the indirect assessment of feed efficiency in cattle. Among them, IR thermography was the most promising alternative to screen cattle for this feed efficiency. These findings might have application in selection programs and in the better understanding of the biological basis associated with productive performance.

Pregnancy development from day 28 to 42 of gestation in postpartum Holstein cows that were either milked (lactating) or not milked (not lactating) after calving

The objective was to determine if lactation affects fetal and placental development from day 28 to 42 of gestation.Bos taurusHolstein cows were assigned to one of the two treatments immediately after parturition (lactating (n=23) or nonlactating (dried off immediately after calving;n=20)). Cows were inseminated at ∼60 dayspostpartumwith semen from a single ejaculate. Pregnant cows were slaughtered at 1 of 3 days of gestation (day 28, 35, or 42) and tissues were collected. The interval to first insemination, services per conception, and days to pregnancy were similar for lactating and nonlactating cows. Lactating cows had greater plasma GH and nonesterified fatty acids. Nonlactating cows had greater plasma glucose, insulin, and IGF1. There was no effect of lactation on plasma progesterone or estradiol concentrations. Lactation had a negative effect on the weight of the fetus and placenta (weights were less in lactating cows). Fetuses collected from cows that became pregnant after first insemination were heavier than fetuses collected from cows that became pregnant after second or third insemination. Pregnancy after first insemination was associated with greater blood glucose and IGF1 during the first 30 dayspostpartum. The conclusions were that lactation negatively affects the growth of fetal and placental tissues perhaps through a mechanism that involves hormones and metabolites that are affected by lactation. Fetal growth within cows conceiving at first insemination compared to second or third insemination was more rapid and was associated with greater blood glucose and IGF1 earlypostpartum(before day 30).

Residual feed intake adjusted for backfat thickness and feeding frequency is independent of fertility in beef heifers

Basarab, J. A., Colazo, M. G., Ambrose, D. J., Novak, S., McCartney, D. and Baron, V. S. 2011. Residual feed intake adjusted for backfat thickness and feeding frequency is independent of fertility in beef heifers. Can. J. Anim. Sci. 91: 573–584. This study examined the effects of residual feed intake (RFI), RFI adjusted for off-test backfat thickness (RFIfat) and RFI adjusted for off-test backfat thickness and feeding event frequency (RFIfat & activity) on heifer fertility and productivity. Beef heifers (n=190) were monitored for individual daily feed intake and feeding event activity over 108–112 d using the GrowSafe System® and assessed for age at puberty based on plasma progesterone concentration. Individual animal daily feed intake, feeding event activity and off-test backfat thickness were then used to calculate RFI, RFIfat and RFIfat & activity and group heifers as either negative ([−], RFI<0.0) or positive ([+], RFI≥0.0) for RFI. Heifers averaged 298 kg (SD=34) in body weight, were 276 days of age (SD=19) at the start of test, grew at 0.90 kg d−1 (SD=0.21), consumed 7.62 kg DM head−1 d−1 (SD=0.84) and had a feed conversion ratio of 8.93 (SD=2.43). Age (351 d, SD=43) and weight (367.3 kg, SD=45.0) at puberty were similar between [−] and [+] RFI heifers, but age at puberty was delayed in [−] RFIfat (P=0.04) and RFIfat & activity (P=0.08) heifers compared with [+] RFIfat and RFIfat & activity heifers. Efficient or [−] RFI heifer exhibited a lower pregnancy (76.84 vs. 86.32%, P=0.09) and calving rate (72.63 vs. 84.21%, P=0.05) compared with [+] RFI heifers. These differences were partially removed in [−] RFIfat and completely removed in [−] RFIfat & activity compared with their [+] RFI counterparts (pregnancy rate, 80.85 vs. 82.29%, P=0.80; calving rate, 75.53 vs. 81.25%, P=0.34). No differences were observed between efficient and inefficient heifers in calving difficulty, average calving date, age at first calving, calf birth weight, calf pre-weaning ADG, calf weaning weight and heifer productivity. However, [+] RFI heifers exhibited a 1.9-fold higher calf death loss compared with [−] RFI heifers (11.11% vs. 5.71%, P=0.24). This difference was more pronounced in [+] RFIfat and [+] RFIfat & activity heifers, which exhibited 2.2-fold (11.84% vs. 5.33%, P=0.15) and 3.0-fold (12.66% vs. 4.17%, P=0.06) higher calf death loss compared with [−] RFI heifers. There was no relationship of RFI adjusted for backfat thickness and feeding activity on fertility traits indicating that backfat thickness and feeding activity may be associated with feed intake and should be considered when selecting heifers for improved feed efficiency.

Muscle characteristics and meat quality traits are affected by divergent selection on residual feed intake in pigs

Residual feed intake (RFI) is defined as the difference between the observed feed intake and that expected based on requirements for maintenance and production. A divergent selection was conducted during 4 generations in Large White male pigs to produce low and high RFI lines. The present study aims at determining the influence of this selection on biochemical and histological traits of skeletal muscle, and relating these changes to correlated effects on growth, carcass composition, and meat quality traits. At 8 d preslaughter, biopsies from the LM were taken in the fed state on 14 females from each RFI line fed ad libitum. Animals were slaughtered at 107.8 ± 8.0 kg of BW without any previous fasting. Samples of LM, semimembranosus (SM), biceps femoris (BFM), and rhomboideus muscles were taken at both 30 min and 24 h postmortem. Myofiber typing was only assessed in LM. Low RFI pigs ("efficient") had leaner carcasses with greater muscle content (P < 0.001), less backfat thickness (P < 0.001), and less intramuscular fat content in all 4 muscles (P < 0.01 to P = 0.04). Their greater muscle content was associated with hypertrophy of all fast-twitch fibers. Glycogen content in all glycolytic muscles (i.e., LM, SM and BFM), was greater in low than high RFI pigs. The greater accumulation of glycogen in LM of low RFI pigs was specifically located in the fast-twitch glycolytic IIBW fibers, which correspond to fibers containing IIb, IIb + IIx, or IIx myosin heavy chains. The difference in muscle glycogen content between RFI line pigs was more significant in the living animals (P = 0.0003) than at 30 min postmortem (P = 0.08). This was associated with a decreased ultimate pH (P = 0.001), and greater lightness of color (P = 0.002) and drip loss (P = 0.04) in LM of low than high RFI line pigs, suggesting that selection for reduced RFI may impair some meat quality traits, such as water-holding capacity. Pigs from the low RFI line exhibited a greater (P = 0.02) percentage of IIBW fibers in LM and tended (P < 0.10) to have less lipid β-oxidative capacity in LM, SM, and BFM. In contrast, no difference (P > 0.10) between lines was found for citrate synthase and lactate dehydrogenase activities, mitochondrial activity, and expression of genes coding for uncoupling proteins 2 and 3. Differences between RFI pigs in plasma leptin, cortisol, and thyroid hormone concentrations are presented and discussed. In conclusion, selection for low RFI influenced muscle properties in a way favoring muscle mass, but likely impairing meat quality.

mRNA expression of genes regulating oxidative phosphorylation in the muscle of beef cattle divergently ranked on residual feed intake

Our objective was to evaluate the effects of phenotypic ranking on residual feed intake (RFI) on the transcription of genes 1) involved in the respiratory chain complex and 2) coding for transcriptional factors regulating mitochondrial biogenesis, across two contrasting diet types. Beef heifers (n = 86) fed a diet comprising 70:30 concentrate-corn silage [low forage (LF)] over a 82-day period were ranked on RFI. The 10 highest (feed inefficient, high-RFI) and 10 lowest (feed efficient, low-RFI) ranking animals were selected for the current study. Biopsies of the M. longissimus dorsi were harvested following initial selection (LF diet) and again following a 6 wk period while the animals were offered a high-forage (HF) grass silage-only diet. Real-time PCR was used to quantify mRNA transcripts of 17 genes associated with cellular energetic efficiency. The mRNA expression of UCP3 tended to be upregulated (2.2-fold, P = 0.06) for the high-RFI compared with the low-RFI animals. mRNA transcripts coding for the transcription factor PGC-1α was 1.7-fold higher (P = 0.01) in low compared with high-RFI animals. A phenotype × diet interaction was evident for the abundance of ANT1 mRNA transcript, with greater (P = 0.04) expression levels detected in the low-RFI phenotype during the HF period, but no difference (P = 0.50) between phenotypes during the LF period. A phenotype × diet interaction was also evident for COX II with greater expression levels detected (P = 0.04) in the low compared with the high RFI phenotype while on LF but not the HF diet (P = 0.22). These data suggest an association between cellular energetic efficiency and RFI in cattle.

Repeatability of feed efficiency, carcass ultrasound, feeding behavior, and blood metabolic variables in finishing heifers divergently selected for residual feed intake

This study examined the relationship between feed efficiency and performance, and feeding behavior, blood metabolic variables, and various ultrasonic measurements in finishing beef heifers. Within-animal repeatability estimates of feed intake and behavior, performance, feed efficiency, ultrasonic body measures, and plasma analytes across the growing and finishing stages of the lifespan of the animal were also calculated. Fifty heifers previously ranked as yearlings on phenotypic residual feed intake (RFI) were used. Animals [initial BW = 418 (SD = 31.5) kg] were offered a TMR diet consisting of 70:30 concentrate and corn silage on a DM basis (ME 10.7 MJ/kg of DM; DM 530 g/kg) for 84 d. Feeding duration (min/d) and feeding frequency (events/d) were calculated for each animal on a daily basis using a computerized feeding system. Ultrasonic kidney fat and lumbar and rump fat and muscle depths were recorded on 3 equally spaced occasions during the experimental period. Blood samples were collected by jugular venipuncture on 4 occasions during the experimental period and analyzed for plasma concentrations of IGF-I, insulin, and various metabolites. Phenotypic RFI was calculated for all animals as the residuals from a regression model regressing DMI on ADG and midtest BW(0.75). Repeatability was calculated for several traits both within and between production phase using intraclass correlation and Pearson correlation coefficients as appropriate. Overall ADG, DMI, G:F, and RFI were 1.17 kg/d (SD = 0.19), 10.81 kg/d (SD = 1.02), 0.11 kg of BW gain/kg of DM (SD = 0.02), and 0.00 kg of DM/d (SD 0.59). Daily feeding events and eating rate tended to be positively correlated (P = 0.08) with RFI. Ultrasonic kidney fat depth tended to be related to G:F (r = -0.28; P = 0.07), and kidney fat accretion tended to be related to RFI (r = 0.29; P = 0.08). Plasma urea (r = 0.38; P < 0.01), β-hydroxybutyrate (r = 0.40; P < 0.01), and insulin (r = 0.23; P = 0.07) concentrations were correlated with RFI. Plasma glucose (r = -0.25; P = 0.07), glucose:insulin (r = 0.33; P < 0.05), and insulin (r = -0.30; P < 0.05) were associated with G:F. However, systemic IGF-I was unrelated (P > 0.10) to any measure of feed efficiency. Repeatability estimates within the finishing period for DMI, feeding duration, feeding events, feed intake/feeding event, and eating rate were 0.34, 0.37, 0.60, 0.62, and 0.56, respectively. Repeatability estimates (P < 0.001) between the growing and finishing phases for DMI, G:F, and RFI were r = 0.61, r = 0.37, and r = 0.62, respectively. Moderate to strong repeatability values (ranging from r = 0.40 to 0.76; P < 0.001) were obtained for feeding behavior traits between the yearling and finishing phases. We conclude that RFI and feeding behavior are repeatable traits and that some plasma analytes may be potential indicators of RFI in beef cattle.

Energy utilization in pigs selected for high and low residual feed intake

Genetic selection on residual feed intake (RFI) can be used as an alternative method to G:F to improve feed efficiency in pigs. The objective of this study was to determine the effects of selection for RFI on digestive and metabolic utilization of energy in 2 lines of purebred French Large White castrated male pigs obtained from a divergent selection experiment over 6 generations. The RFI(+) (high RFI) line consumed more feed than predicted from performance compared with the RFI(-) (low RFI) line. Digestibility of energy and nutrients, total heat production (HP), HP related to physical activity, and energy and N balance were measured in respiration chambers for a 6-d period in pigs offered feed ad libitum. Pigs remained in the chamber for an additional day and did not receive any feed to estimate the fasting HP and calculate the thermic effect of feeding. Five pairs of 2 littermates from the same farrowing batch were used in each line. Because 2 respiration chambers were available for the trial, pigs were measured regularly during the 25- to 95-kg growing period. Two pigs per chamber were used until pigs reached 45 kg of BW, and 1 pig per chamber was used thereafter. Individual feed intake and BW gain were measured continuously from weaning to the end of the trial. Pigs were fed 3 diets with decreasing CP contents during the 25 to 45 (period 1), 45 to 65 (period 2), and 65 to 95 (period 3) kg of BW periods. Average daily feed intake was greater in RFI(+) pigs than in RFI(-) pigs between 25 and 65 kg of BW (2,128 vs. 1,891 g/d; P < 0.01) and G:F was 8% greater in RFI(-) pigs compared with RFI(+) pigs (P < 0.01). There was no line effect on digestibility coefficients or N retention, irrespective of the experimental period studied. Nitrogen retention was 31.2, 28.7, and 20.8 g/d at periods 1, 2, and 3, respectively (P < 0.001). The HP was greater in RFI(+) pigs than in RFI(-) pigs (1,497 vs. 1,383 kJ.kg of BW(-0.60).d(-1); P < 0.01), with no subsequent line effect on energy retention. The activity-related HP tended to be greater in RFI(+) pigs than in RFI(-) pigs (250 vs. 218 kJ.kg of BW(-0.60).d(-1); P = 0.09), and the fasting HP was 10% greater (P = 0.04) in RFI(+) pigs than in RFI(-) pigs (846 vs. 771 kJ.kg of BW(-0.60).d(-1)). The thermic effect of feeding, expressed as a percentage of ME intake, was the same for both lines of pigs (average, 14.7%). In conclusion, the RFI(+) pigs are energetically less efficient because of their greater HP related to physical activity and basal metabolic rate.

Surviving the drought: burrowing frogs save energy by increasing mitochondrial coupling

During dormancy energy conservation is a key priority and as such dormant animals undergo a major metabolic depression to conserve their limited endogenous fuel supplies. Mitochondrial coupling efficiency, the efficiency with which mitochondria convert oxygen into ATP, significantly affects aerobic metabolism and thus to maximise energy savings during dormancy it has been hypothesised that coupling efficiency should increase. However, previous studies have shown coupling efficiency to be maintained or even to decrease. In this study we measured state 3 and state 4 mitochondrial respiration in the muscle of the burrowing frog, Cyclorana alboguttata and calculated the respiratory control ratio as a measure of coupling efficiency. After 7 months in aestivation, C. alboguttata significantly reduced oxygen consumption of isolated mitochondria by 83% and, unlike other dormant animals, the frogs appeared to decrease rates of proton leak to a greater extent than ATP synthesis, consistent with an increase in mitochondrial coupling efficiency. The significant energy savings observed at the mitochondrial level were reflected at higher levels of biological organisation, with tissue oxygen consumption depressed by as much as 81% and whole animal metabolic rate by 82%. Cyclorana alboguttata can survive in a dormant state for several years and we propose the hypothesis that energy efficiency is increased during aestivation.

Effect of divergence in residual feed intake on feeding behavior, blood metabolic variables, and body composition traits in growing beef heifers

This study examined the relationship of feed efficiency and performance with feeding behavior, blood metabolic variables, and various body composition measurements in growing beef heifers. Individual DMI and growth were measured in yearling Limousin x Holstein-Friesian heifers [n = 86; initial BW = 191.8 (SD = 37) kg] fed a TMR diet comprising 70:30 concentrate:corn silage on a DM basis (ME of 2.65 Mcal/kg of DM; DM of 580 g/kg) for 82 d. Meal duration (min/d) and meal frequency (events/d) were calculated for each animal on a daily basis using an Insentec computerized feeding system. Physical measurements as well as ultrasonic fat and muscle depths were recorded on 3 equally spaced occasions during the experimental period. Blood samples were collected by jugular venipuncture on 4 equally spaced occasions and analyzed for plasma concentrations of IGF-I, insulin, leptin, and various metabolites. Phenotypic residual feed intake (RFI) was calculated for all animals as the residuals from a multiple regression model regressing DMI on ADG and midtest BW(0.75). Overall, ADG, DMI, feed conversion ratio (FCR), and RFI were 1.51 (SD = 0.13), 6.74 (SD = 0.99), 4.48 (SD = 0.65), and 0.00 (SD = 0.48) kg/d, respectively. Residual feed intake was positively correlated with DMI (r = 0.47) and FCR (r = 0.46), but not with ADG or midtest BW. Positive correlations (ranging from r = 0.27 to r = 0.63) were estimated between ultrasonic measures of final lumbar fat and lumbar fat accretion over the test period and DMI, FCR, and RFI. The inclusion of gain in lumbar fat to the base RFI model increased R(2) (0.77 vs. 0.80) value for the degree of variation in DMI not explained by midtest BW and ADG alone. The Pearson rank correlation between RFI and carcass-adjusted RFI (RFI(c)) was high (r = 0.93). From the plasma analytes measured, NEFA (r = -0.21; P < 0.05) and beta-hydroxybutyrate (r = 0.37; P < 0.05) concentrations were correlated with RFI. Plasma leptin (r = 0.48), glucose:insulin (r = -0.23), NEFA (r = -0.32), and beta-hydroxybutyrate (r = 0.25) were associated with FCR. However, systemic IGF-I and insulin were unrelated (P > 0.05) to any measure of feed efficiency. The feeding behavior traits of eating rate, daily feeding events, and nonfeeding events were positively correlated (P < 0.05) with RFI and RFI(c). This multifactorial study provides new information on some of the biological processes responsible for variation in feed efficiency in beef cattle.

Association of mitochondrial function and feed efficiency in poultry and livestock species

As grain prices have increased dramatically in the past year, understanding the fundamental genetic, cellular, and biochemical mechanisms responsible for feed efficiency (FE; g of gain/g of feed) or residual feed intake (RFI; an alternative feed efficiency trait that quantifies interanimal variation in DMI that is unexplained by differences in BW and growth rate) in livestock and poultry is extremely important with respect to maintaining viable meat production practices in the United States. Although breed and diet have long been known to affect mitochondrial function, few studies have investigated differences in mitochondrial function and biochemistry due to interanimal phenotypic differences in FE or RFI (i.e., variation among animals of the same breed and fed the same diet). This paper reviews existing literature on relationships of mitochondrial function and biochemistry with FE and RFI in poultry and livestock. The overall goal of all of this paper is to assist the development of tools (e.g., genetic markers or biomarkers) to aid commercial breeding companies in genetic selection that, in turn, will help maintain viable livestock and poultry industries in the United States and around the world.

Physiological basis for residual feed intake

Residual feed intake (RFI) is a measure of feed efficiency that is independent of level of production, such as size and growth rate in beef cattle, and thus is a useful new trait for studying the physiological mechanisms underlying variation in feed efficiency. Five major physiological processes are likely to contribute to variation in RFI, these being processes associated with intake of feed, digestion of feed, metabolism (anabolism and catabolism associated with and including variation in body composition), physical activity, and thermoregulation. Studies on Angus steers following divergent selection for RFI estimated that heat production from metabolic processes, body composition, and physical activity explained 73% of the variation in RFI. The proportions of variation in RFI that these processes explain are protein turnover, tissue metabolism and stress (37%); digestibility (10%); heat increment and fermentation (9%); physical activity (9%); body composition (5%); and feeding patterns (2%). Other studies in cattle and studies in poultry similarly found these processes to be important in explaining RFI. The physiological mechanisms identified so far are based on very few studies, some of which have small sample sizes. The genomic basis to variation in these physiological processes remains to be determined. Early studies have shown many hundred genes to be associated with differences in RFI, perhaps in hindsight not surprising given the diversity of physiological processes involved. Further research is required to better understand the mechanisms responsible for the variation in RFI in target populations and to marry the physiological information with molecular genetics information that will become the basis for commercial tests for genetically superior animals.

The effect of residual feed intake classification on forage intake by grazing beef cows

Although feed intake and efficiency differences in growing cattle of low and high residual feed intake (RFI) classification have been established, little is known about the difference in grazed forage intake between beef cows of known RFI classification. Two experiments were conducted using Hereford cows for which RFI had been determined as heifers using the GrowSafe 4000E feed intake system, after which heifers had been divided into thirds as low RFI, mid RFI, and high RFI. During Exp. 1, 2 replicates of low and high RFI cows (n = 7/replicate) in mid- to late-gestation were blocked to 1 of 4 non-endophyte-infected tall fescue paddocks (1.8 to 2.4 ha), which they grazed continuously for 84 d during summer. Using grazing exclosures, weekly rising plate meter readings, and forage harvests every 21 d, average forage DMI was calculated. Low and high RFI groups did not differ (P > 0.05) in BW change or BCS change over the trial (19.5 vs. 22.1 kg of BW gain and 0.11 vs. 0.10 BCS gain), but low RFI cows had a 21% numerically lower DMI than high RFI cows (12.4 vs. 15.6 kg/d; P = 0.23). The average area needed per paddock over the trial was similar for low and high RFI cows (1.71 vs. 1.82 ha; P = 0.35), and the average DM on offer over the trial was less for low RFI than for high RFI cows (4,215 vs. 4,376 kg; P = 0.06). During Exp. 2, 3 replicates of low and high RFI cows with their calves (n = 4 pair/replicate) strip-grazed stockpiled and early spring growth tall fescue paddocks (0.7 to 0.9 ha) for 60 d in late winter and early spring. Because of limiting forage availability and quality at trial initiation, cow-calf pairs were also fed 3.31 kg/pair of pelleted soyhulls daily. Pre- and post-grazed forage samples were harvested for 4 grazing periods, and forage growth was estimated using a growing degree days calculation and on-site weather station data. Performance did not differ (P > 0.05) between low and high RFI cows throughout the experiment (18.4 vs. 26.6 kg of BW gain and -0.04 vs. 0.15 BCS gain). Despite the utilization of forage offered being similar for low and high RFI cow-calf pairs (P > 0.05), low RFI cows and their calves had an 11% numerically lower DMI than high RFI pairs (12.5 vs. 14.1 kg/d; P = 0.12). We concluded that either no intake differences existed between low and high RFI cows or that current methodology and small animal numbers limited our ability to detect differences.

The relationship of feeding behavior to residual feed intake in crossbred Angus steers fed traditional and no-roughage diets

Two studies were conducted to determine the relationship of feeding behavior to a phenotypic expression of residual feed intake (RFI), a measure of efficiency. In Exp. 1, a feedlot diet containing roughage was fed (traditional). In Exp. 2, a no-roughage diet was fed. Residual feed intake, a measure of feed efficiency, was calculated for both studies. In Exp. 1, six feed-efficient (low RFI) steers and six feed-inefficient steers (high RFI) were selected from a contemporary group of 80 steers, and feeding behaviors were analyzed. In Exp. 2, nine feed-efficient and eight feed-inefficient steers were selected from a contemporary group of 40 steers. There were no differences (P > 0.13) in initial or final BW or ADG between efficient and inefficient groups in either Exp. 1 or 2. In Exp. 1, DMI and average eating bouts daily differed (P < 0.001), with efficient steers consuming less feed and eating fewer times per day. In Exp. 2, efficient steers consumed less (P < 0.001) feed, and average eating bouts daily tended (P = 0.07) to be fewer in efficient animals. Limited differences were noted in feeding behavior between groups, with inefficient steers from both studies having a more variable eating pattern throughout the day. The average daily eating rate did not differ (P > 0.20) between groups in either experiment. The average number of days comprising a feeding pattern for both efficiency groups in Exp. 1 and 2 was found to be 2 to 3 d and multiples of 2 to 3 d. In Exp. 1, the feed intake pattern of efficient and inefficient steers changed once they reached a BW of approximately 391 and 381 kg, respectively. This occurred near d 47 for the efficient steers and near d 32 for inefficient steers. In Exp. 2, the feed intake pattern of both efficient and inefficient steers changed once they reached a BW of approximately 399 kg, which occurred on d 31 for the efficient steers and on d 33 for the inefficient steers. From the measured variables, there were no differences in growth and limited differences noted in feeding behavior between efficient and inefficient groups. The results of the trials suggest increased variability of feed intake throughout the day for inefficient animals.

The relationships among mitochondrial uncoupling protein 2 and 3 expression, mitochondrial deoxyribonucleic acid single nucleotide polymorphisms, and residual feed intake in Angus steers1

The objective of this study was to determine the relationships of uncoupling protein 2 and 3 expression, SNP of mitochondrial DNA, and residual feed intake (RFI) in Angus steers selected to have high or low RFI. Individual feed intake was measured via the GrowSafe feed intake system over a 3-mo period and used to calculate RFI, a measure of efficiency. Based on these calculations, 6 low- (average RFI = -1.57 kg) and 6 high- (average RFI = 1.66 kg) RFI steers were selected for further study. Blood was collected via jugular venipuncture 1 wk before slaughter for the isolation of mitochondrial DNA. The steers were then killed to collect LM for the measurement of uncoupling protein 2 and 3 mRNA and protein expression. Protein and mRNA expression of uncoupling protein 2 and 3 were determined by Western blotting and quantitative PCR, respectively. To determine SNP of mitochondrial DNA, total DNA was isolated from blood via standard phenol/chloroform extraction; fragments were amplified with PCR and sequenced with an automated nucleotide sequencer. Average daily gain and carcass composition were not different (P > 0.13) between the high- and low-RFI steers; however, ADFI by the high-RFI animals was 3.77 kg greater (P < 0.001) than the low-RFI animals. No difference (P > 0.55) was observed between the high- and low-RFI animals in their expression of uncoupling protein 2 or 3 mRNA or protein. On average 9.8 and 8.9 polymorphisms were found per mitochondrial genome for the low- and high-RFI steers, respectively. None of these polymorphisms were related to RFI. It seems that the expression of uncoupling protein 2 and 3 and mitochondrial DNA sequence are not related to RFI status.