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Haq QMI, Mabood F, Naureen Z, Al-Harrasi A, Gilani SA, Hussain J, Jabeen F, Khan A, Al-Sabari RSM, Al-Khanbashi FHS, Al-Fahdi AAM, Al-Zaabi AKA, Al-Shuraiqi FAM, Al-Bahaisi IM. Application of reflectance spectroscopies (FTIR-ATR & FT-NIR) coupled with multivariate methods for robust in vivo detection of begomovirus infection in papaya leaves. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 198:27-32. [PMID: 29501003 DOI: 10.1016/j.saa.2018.02.065] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2018] [Revised: 02/21/2018] [Accepted: 02/24/2018] [Indexed: 06/08/2023]
Abstract
Nucleic acid & serology based methods have revolutionized plant disease detection, however, they are not very reliable at asymptomatic stage, especially in case of pathogen with systemic infection, in addition, they need at least 1-2days for sample harvesting, processing, and analysis. In this study, two reflectance spectroscopies i.e. Near Infrared reflectance spectroscopy (NIR) and Fourier-Transform-Infrared spectroscopy with Attenuated Total Reflection (FT-IR, ATR) coupled with multivariate exploratory methods like Principle Component Analysis (PCA) and Partial least square discriminant analysis (PLS-DA) have been deployed to detect begomovirus infection in papaya leaves. The application of those techniques demonstrates that they are very useful for robust in vivo detection of plant begomovirus infection. These methods are simple, sensitive, reproducible, precise, and do not require any lengthy samples preparation procedures.
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Affiliation(s)
- Quazi M I Haq
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman.
| | - Fazal Mabood
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman.
| | - Zakira Naureen
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman.
| | - Ahmed Al-Harrasi
- UoN Chair of Oman Medicinal Plants and Marine Products, University of Nizwa, Oman
| | - Sayed A Gilani
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman
| | - Javid Hussain
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman
| | - Farah Jabeen
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman
| | - Ajmal Khan
- UoN Chair of Oman Medicinal Plants and Marine Products, University of Nizwa, Oman
| | - Ruqaya S M Al-Sabari
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman
| | - Fatema H S Al-Khanbashi
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman
| | - Amira A M Al-Fahdi
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman
| | - Ahoud K A Al-Zaabi
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman
| | - Fatma A M Al-Shuraiqi
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman
| | - Iman M Al-Bahaisi
- Department of Biological Sciences & Chemistry, College of Arts and Sciences, University of Nizwa, Oman
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Singh PK, Nag A, Arya P, Kapoor R, Singh A, Jaswal R, Sharma TR. Prospects of Understanding the Molecular Biology of Disease Resistance in Rice. Int J Mol Sci 2018; 19:E1141. [PMID: 29642631 PMCID: PMC5979409 DOI: 10.3390/ijms19041141] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2018] [Revised: 03/03/2018] [Accepted: 03/05/2018] [Indexed: 12/11/2022] Open
Abstract
Rice is one of the important crops grown worldwide and is considered as an important crop for global food security. Rice is being affected by various fungal, bacterial and viral diseases resulting in huge yield losses every year. Deployment of resistance genes in various crops is one of the important methods of disease management. However, identification, cloning and characterization of disease resistance genes is a very tedious effort. To increase the life span of resistant cultivars, it is important to understand the molecular basis of plant host-pathogen interaction. With the advancement in rice genetics and genomics, several rice varieties resistant to fungal, bacterial and viral pathogens have been developed. However, resistance response of these varieties break down very frequently because of the emergence of more virulent races of the pathogen in nature. To increase the durability of resistance genes under field conditions, understanding the mechanismof resistance response and its molecular basis should be well understood. Some emerging concepts like interspecies transfer of pattern recognition receptors (PRRs) and transgenerational plant immunitycan be employed to develop sustainable broad spectrum resistant varieties of rice.
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Affiliation(s)
- Pankaj Kumar Singh
- National Agri-Food Biotechnology Institute, Mohali 140 306, Punjab, India.
| | - Akshay Nag
- National Agri-Food Biotechnology Institute, Mohali 140 306, Punjab, India.
| | - Preeti Arya
- National Agri-Food Biotechnology Institute, Mohali 140 306, Punjab, India.
| | - Ritu Kapoor
- National Agri-Food Biotechnology Institute, Mohali 140 306, Punjab, India.
| | - Akshay Singh
- National Agri-Food Biotechnology Institute, Mohali 140 306, Punjab, India.
| | - Rajdeep Jaswal
- National Agri-Food Biotechnology Institute, Mohali 140 306, Punjab, India.
| | - Tilak Raj Sharma
- National Agri-Food Biotechnology Institute, Mohali 140 306, Punjab, India.
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Affiliation(s)
- Yu Huang
- College of Life Sciences, Peking University, Beijing, China
| | - Yi Li
- College of Life Sciences, Peking University, Beijing, China.
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