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For: Lin G, Adiga U, Olson K, Guzowski JF, Barnes CA, Roysam B. A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks. Cytometry A 2004;56:23-36. [PMID: 14566936 DOI: 10.1002/cyto.a.10079] [Citation(s) in RCA: 247] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Number Cited by Other Article(s)
101
Averbuch A, Lifschitz G, Shkolnisky Y. Accelerating x-ray data collection using pyramid beam ray casting geometries. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2011;20:523-533. [PMID: 20693110 DOI: 10.1109/tip.2010.2064328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
102
Nandy K, Gudla PR, Amundsen R, Meaburn KJ, Misteli T, Lockett SJ. Supervised learning framework for screening nuclei in tissue sections. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2011;2011:5989-92. [PMID: 22255704 PMCID: PMC6317069 DOI: 10.1109/iembs.2011.6091480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
103
Santella A, Du Z, Nowotschin S, Hadjantonakis AK, Bao Z. A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D. BMC Bioinformatics 2010;11:580. [PMID: 21114815 PMCID: PMC3008706 DOI: 10.1186/1471-2105-11-580] [Citation(s) in RCA: 79] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2010] [Accepted: 11/29/2010] [Indexed: 01/14/2023]  Open
104
Coelho LP, Peng T, Murphy RF. Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing. Bioinformatics 2010;26:i7-12. [PMID: 20529939 PMCID: PMC2881404 DOI: 10.1093/bioinformatics/btq220] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
105
Rohr K, Godinez WJ, Harder N, Wörz S, Mattes J, Tvaruskó W, Eils R. Tracking and quantitative analysis of dynamic movements of cells and particles. Cold Spring Harb Protoc 2010;2010:pdb.top80. [PMID: 20516188 DOI: 10.1101/pdb.top80] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
106
Han J, Chang H, Yang Q, Fontenay G, Groesser T, Barcellos-Hoff MH, Parvin B. Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models. J Microsc 2010;241:315-26. [PMID: 21118235 DOI: 10.1111/j.1365-2818.2010.03442.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
107
Thurnherr T, Choo A, Reading I, Oh SKW. Population estimation of human embryonic stem cell cultures. Biotechnol Prog 2010;26:573-9. [PMID: 19941360 DOI: 10.1002/btpr.344] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
108
Rittscher J. Characterization of Biological Processes through Automated Image Analysis. Annu Rev Biomed Eng 2010;12:315-44. [DOI: 10.1146/annurev-bioeng-070909-105235] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
109
Forero MG, Pennack JA, Hidalgo A. DeadEasy neurons: automatic counting of HB9 neuronal nuclei in Drosophila. Cytometry A 2010;77:371-8. [PMID: 20162534 DOI: 10.1002/cyto.a.20877] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
110
Huang Y, Zhou X, Miao B, Lipinski M, Zhang Y, Li F, Degterev A, Yuan J, Hu G, Wong STC. A computational framework for studying neuron morphology from in vitro high content neuron-based screening. J Neurosci Methods 2010;190:299-309. [PMID: 20580743 DOI: 10.1016/j.jneumeth.2010.05.012] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2009] [Revised: 05/11/2010] [Accepted: 05/16/2010] [Indexed: 10/19/2022]
111
Shariff A, Kangas J, Coelho LP, Quinn S, Murphy RF. Automated image analysis for high-content screening and analysis. ACTA ACUST UNITED AC 2010;15:726-34. [PMID: 20488979 DOI: 10.1177/1087057110370894] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
112
Forero MG, Learte AR, Cartwright S, Hidalgo A. DeadEasy Mito-Glia: automatic counting of mitotic cells and glial cells in Drosophila. PLoS One 2010;5:e10557. [PMID: 20479944 PMCID: PMC2866669 DOI: 10.1371/journal.pone.0010557] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2010] [Accepted: 04/19/2010] [Indexed: 11/26/2022]  Open
113
Preclinical evaluation of nuclear morphometry and tissue topology for breast carcinoma detection and margin assessment. Breast Cancer Res Treat 2010;126:345-54. [PMID: 20446030 DOI: 10.1007/s10549-010-0914-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2010] [Accepted: 04/21/2010] [Indexed: 10/19/2022]
114
Aydin Z, Murray JI, Waterston RH, Noble WS. Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo. BMC Bioinformatics 2010;11:84. [PMID: 20146825 PMCID: PMC2838868 DOI: 10.1186/1471-2105-11-84] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2009] [Accepted: 02/11/2010] [Indexed: 11/10/2022]  Open
115
Cui Y, Tan Y, Zhao B, Liberman L, Parbhu R, Kaplan J, Theodoulou M, Hudis C, Schwartz LH. Malignant lesion segmentation in contrast-enhanced breast MR images based on the marker-controlled watershed. Med Phys 2010;36:4359-69. [PMID: 19928066 DOI: 10.1118/1.3213514] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
116
Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns. ACTA ACUST UNITED AC 2010. [DOI: 10.1007/978-3-642-13131-8_2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023]
117
Al-Kofahi Y, Lassoued W, Lee W, Roysam B. Improved automatic detection and segmentation of cell nuclei in histopathology images. IEEE Trans Biomed Eng 2009;57:841-52. [PMID: 19884070 DOI: 10.1109/tbme.2009.2035102] [Citation(s) in RCA: 322] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
118
Angarita-Jaimes NC, Roca MGM, Towers CE, Read ND, Towers DP. Algorithms for the automated analysis of cellular dynamics within living fungal colonies. Cytometry A 2009;75:768-80. [PMID: 19504570 DOI: 10.1002/cyto.a.20750] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
119
Jeong MR, Ko BC, Nam JY. Overlapping nuclei segmentation based on Bayesian networks and stepwise merging strategy. J Microsc 2009;235:188-98. [PMID: 19659912 DOI: 10.1111/j.1365-2818.2009.03199.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
120
Gertych A, Wawrowsky KA, Lindsley E, Vishnevsky E, Farkas DL, Tajbakhsh J. Automated quantification of DNA demethylation effects in cells via 3D mapping of nuclear signatures and population homogeneity assessment. Cytometry A 2009;75:569-83. [PMID: 19459215 DOI: 10.1002/cyto.a.20740] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
121
Huang Y, Sun X, Hu G. An automatic integrated approach for stained neuron detection in studying neuron migration. Microsc Res Tech 2009;73:109-18. [PMID: 19697431 DOI: 10.1002/jemt.20762] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
122
Zhou X, Li F, Yan J, Wong STC. A novel cell segmentation method and cell phase identification using Markov model. ACTA ACUST UNITED AC 2009;13:152-7. [PMID: 19272857 DOI: 10.1109/titb.2008.2007098] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
123
Pinidiyaarachchi A, Zieba A, Allalou A, Pardali K, Wählby C. A detailed analysis of 3D subcellular signal localization. Cytometry A 2009;75:319-28. [PMID: 19006073 DOI: 10.1002/cyto.a.20663] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
124
Coelho LP, Shariff A, Murphy RF. NUCLEAR SEGMENTATION IN MICROSCOPE CELL IMAGES: A HAND-SEGMENTED DATASET AND COMPARISON OF ALGORITHMS. PROCEEDINGS. IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING 2009;5193098:518-521. [PMID: 20628545 DOI: 10.1109/isbi.2009.5193098] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
125
DeadEasy caspase: automatic counting of apoptotic cells in Drosophila. PLoS One 2009;4:e5441. [PMID: 19415123 PMCID: PMC2674211 DOI: 10.1371/journal.pone.0005441] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2009] [Accepted: 04/06/2009] [Indexed: 11/19/2022]  Open
126
Hodneland E, Bukoreshtliev NV, Eichler TW, Tai XC, Gurke S, Lundervold A, Gerdes HH. A unified framework for automated 3-d segmentation of surface-stained living cells and a comprehensive segmentation evaluation. IEEE TRANSACTIONS ON MEDICAL IMAGING 2009;28:720-738. [PMID: 19131295 DOI: 10.1109/tmi.2008.2011522] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
127
Rapid activation of plasticity-associated gene transcription in hippocampal neurons provides a mechanism for encoding of one-trial experience. J Neurosci 2009;29:898-906. [PMID: 19176799 DOI: 10.1523/jneurosci.4588-08.2009] [Citation(s) in RCA: 97] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
128
Oberlaender M, Dercksen VJ, Egger R, Gensel M, Sakmann B, Hege HC. Automated three-dimensional detection and counting of neuron somata. J Neurosci Methods 2009;180:147-60. [PMID: 19427542 DOI: 10.1016/j.jneumeth.2009.03.008] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2008] [Revised: 03/06/2009] [Accepted: 03/09/2009] [Indexed: 11/28/2022]
129
Fenistein D, Lenseigne B, Christophe T, Brodin P, Genovesio A. A fast, fully automated cell segmentation algorithm for high-throughput and high-content screening. Cytometry A 2008;73:958-64. [PMID: 18752283 DOI: 10.1002/cyto.a.20627] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
130
Delaurier A, Burton N, Bennett M, Baldock R, Davidson D, Mohun TJ, Logan MP. The Mouse Limb Anatomy Atlas: an interactive 3D tool for studying embryonic limb patterning. BMC DEVELOPMENTAL BIOLOGY 2008;8:83. [PMID: 18793391 PMCID: PMC2553786 DOI: 10.1186/1471-213x-8-83] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/21/2008] [Accepted: 09/15/2008] [Indexed: 11/19/2022]
131
Li G, Liu T, Nie J, Guo L, Chen J, Zhu J, Xia W, Mara A, Holley S, Wong STC. Segmentation of touching cell nuclei using gradient flow tracking. J Microsc 2008;231:47-58. [PMID: 18638189 DOI: 10.1111/j.1365-2818.2008.02016.x] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
132
Peng H. Bioimage informatics: a new area of engineering biology. ACTA ACUST UNITED AC 2008;24:1827-36. [PMID: 18603566 PMCID: PMC2519164 DOI: 10.1093/bioinformatics/btn346] [Citation(s) in RCA: 187] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
133
Gudla PR, Nandy K, Collins J, Meaburn KJ, Misteli T, Lockett SJ. A high-throughput system for segmenting nuclei using multiscale techniques. Cytometry A 2008;73:451-66. [PMID: 18338778 DOI: 10.1002/cyto.a.20550] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
134
Wouterlood FG, Boekel AJ, Kajiwara R, Beliën JA. Counting contacts between neurons in 3D in confocal laser scanning images. J Neurosci Methods 2008;171:296-308. [DOI: 10.1016/j.jneumeth.2008.03.014] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2007] [Revised: 02/18/2008] [Accepted: 03/13/2008] [Indexed: 11/24/2022]
135
Li F, Zhou X, Zhu J, Xia W, Ma J, Wong STC. Workflow and methods of high-content time-lapse analysis for quantifying intracellular calcium signals. Neuroinformatics 2008;6:97-108. [PMID: 18506641 DOI: 10.1007/s12021-008-9016-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2007] [Accepted: 03/05/2008] [Indexed: 01/21/2023]
136
Kim KH, Ragan T, Previte MJR, Bahlmann K, Harley BA, Wiktor-Brown DM, Stitt MS, Hendricks CA, Almeida KH, Engelward BP, So PTC. Three-dimensional tissue cytometer based on high-speed multiphoton microscopy. Cytometry A 2008;71:991-1002. [PMID: 17929292 DOI: 10.1002/cyto.a.20470] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
137
Selinummi J, Ruusuvuori P, Lehmussola A, Huttunen H, Yli-Harja O, Miettinen R. Three-dimensional digital image analysis of immunostained neurons in thick tissue sections. CONFERENCE PROCEEDINGS : ... ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL CONFERENCE 2008;2006:4783-6. [PMID: 17946263 DOI: 10.1109/iembs.2006.259419] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
138
Liu T, Li G, Nie J, Tarokh A, Zhou X, Guo L, Malicki J, Xia W, Wong STC. An automated method for cell detection in zebrafish. Neuroinformatics 2008;6:5-21. [PMID: 18288618 DOI: 10.1007/s12021-007-9005-7] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2007] [Accepted: 11/02/2007] [Indexed: 01/01/2023]
139
Bjornsson CS, Lin G, Al-Kofahi Y, Narayanaswamy A, Smith KL, Shain W, Roysam B. Associative image analysis: a method for automated quantification of 3D multi-parameter images of brain tissue. J Neurosci Methods 2008;170:165-78. [PMID: 18294697 DOI: 10.1016/j.jneumeth.2007.12.024] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2007] [Revised: 12/06/2007] [Accepted: 12/27/2007] [Indexed: 10/22/2022]
140
Automated quantification of nuclear immunohistochemical markers with different complexity. Histochem Cell Biol 2008;129:379-87. [DOI: 10.1007/s00418-007-0368-5] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/03/2007] [Indexed: 10/22/2022]
141
Ruf F, Hayot F, Park MJ, Ge Y, Lin G, Roysam B, Sealfon SC. Noise propagation and scaling in regulation of gonadotrope biosynthesis. Biophys J 2007;93:4474-80. [PMID: 17720728 PMCID: PMC2098712 DOI: 10.1529/biophysj.107.115170] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2007] [Accepted: 08/08/2007] [Indexed: 11/18/2022]  Open
142
Li G, Liu T, Nie J, Guo L, Malicki J, Mara A, Holley SA, Xia W, Wong STC. Detection of blob objects in microscopic zebrafish images based on gradient vector diffusion. Cytometry A 2007;71:835-45. [PMID: 17654652 DOI: 10.1002/cyto.a.20436] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
143
Lin G, Chawla MK, Olson K, Barnes CA, Guzowski JF, Bjornsson C, Shain W, Roysam B. A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images. Cytometry A 2007;71:724-36. [PMID: 17654650 DOI: 10.1002/cyto.a.20430] [Citation(s) in RCA: 88] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
144
Ross JD, Reddy NE, Bakkum DJ, Potter SM, DeWeerth SP. Experimental platform for the study of region specific excitation and inhibition in neural tissue. ACTA ACUST UNITED AC 2007;2007:4759-62. [PMID: 18003069 DOI: 10.1109/iembs.2007.4353403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
145
Wang M, Zhou X, Li F, Huckins J, King RW, Wong ST. Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy. Bioinformatics 2007;24:94-101. [DOI: 10.1093/bioinformatics/btm530] [Citation(s) in RCA: 106] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
146
Megason SG, Fraser SE. Imaging in systems biology. Cell 2007;130:784-95. [PMID: 17803903 DOI: 10.1016/j.cell.2007.08.031] [Citation(s) in RCA: 187] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
147
Li F, Zhou X, Zhu J, Ma J, Huang X, Wong STC. High content image analysis for human H4 neuroglioma cells exposed to CuO nanoparticles. BMC Biotechnol 2007;7:66. [PMID: 17925027 PMCID: PMC2151944 DOI: 10.1186/1472-6750-7-66] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2007] [Accepted: 10/09/2007] [Indexed: 11/17/2022]  Open
148
Li G, Liu T, Tarokh A, Nie J, Guo L, Mara A, Holley S, Wong STC. 3D cell nuclei segmentation based on gradient flow tracking. BMC Cell Biol 2007;8:40. [PMID: 17784958 PMCID: PMC2064921 DOI: 10.1186/1471-2121-8-40] [Citation(s) in RCA: 97] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2007] [Accepted: 09/04/2007] [Indexed: 11/17/2022]  Open
149
Colantonio S, Salvetti O, Gurevich IB. A two-step approach for automatic microscopic image segmentation using fuzzy clustering and neural discrimination. PATTERN RECOGNITION AND IMAGE ANALYSIS 2007. [DOI: 10.1134/s1054661807030108] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
150
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