Assessing the complexity of short-term heartbeat interval series by distribution entropy

Distribution entropy analysis of epileptic EEG signals

It is an open-ended challenge to accurately detect the epileptic seizures through electroencephalogram (EEG) signals. Recently published studies have made elaborate attempts to distinguish between the normal and epileptic EEG signals by advanced nonlinear entropy methods, such as the approximate entropy, sample entropy, fuzzy entropy, and permutation entropy, etc. Most recently, a novel distribution entropy (DistEn) has been reported to have superior performance compared with the conventional entropy methods for especially short length data. We thus aimed, in the present study, to show the potential of DistEn in the analysis of epileptic EEG signals. The publicly-accessible Bonn database which consisted of normal, interictal, and ictal EEG signals was used in this study. Three different measurement protocols were set for better understanding the performance of DistEn, which are: i) calculate the DistEn of a specific EEG signal using the full recording; ii) calculate the DistEn by averaging the results for all its possible non-overlapped 5 second segments; and iii) calculate it by averaging the DistEn values for all the possible non-overlapped segments of 1 second length, respectively. Results for all three protocols indicated a statistically significantly increased DistEn for the ictal class compared with both the normal and interictal classes. Besides, the results obtained under the third protocol, which only used very short segments (1 s) of EEG recordings showed a significantly (p <; 0.05) increased DistEn for the interictal class in compassion with the normal class, whereas both analyses using relatively long EEG signals failed in tracking this difference between them, which may be due to a nonstationarity effect on entropy algorithm. The capability of discriminating between the normal and interictal EEG signals is of great clinical relevance since it may provide helpful tools for the detection of a seizure onset. Therefore, our study suggests that the DistEn analysis of EEG signals is very promising for clinical and even portable EEG monitoring.

Distribution Entropy (DistEn): A complexity measure to detect arrhythmia from short length RR interval time series

Heart rate complexity analysis is a powerful non-invasive means to diagnose several cardiac ailments. Non-linear tools of complexity measurement are indispensable in order to bring out the complete non-linear behavior of Physiological signals. The most popularly used non-linear tools to measure signal complexity are the entropy measures like Approximate entropy (ApEn) and Sample entropy (SampEn). But, these methods become unreliable and inaccurate at times, in particular, for short length data. Recently, a novel method of complexity measurement called Distribution Entropy (DistEn) was introduced, which showed reliable performance to capture complexity of both short term synthetic and short term physiologic data. This study aims to i) examine the competence of DistEn in discriminating Arrhythmia from Normal sinus rhythm (NSR) subjects, using RR interval time series data; ii) explore the level of consistency of DistEn with data length N; and iii) compare the performance of DistEn with ApEn and SampEn. Sixty six RR interval time series data belonging to two groups of cardiac conditions namely `Arrhythmia' and `NSR' have been used for the analysis. The data length N was varied from 50 to 1000 beats with embedding dimension m = 2 for all entropy measurements. Maximum ROC area obtained using ApEn, SampEn and DistEn were 0.83, 0.86 and 0.94 for data length 1000, 1000 and 500 beats respectively. The results show that DistEn undoubtedly exhibits a consistently high performance as a classification feature in comparison with ApEn and SampEn. Therefore, DistEn shows a promising behavior as bio marker for detecting Arrhythmia from short length RR interval data.

Detection of Coupling in Short Physiological Series by a Joint Distribution Entropy Method

OBJECTIVE

In this study, we developed a joint distribution entropy (JDistEn) method to robustly estimate the coupling in short physiological series.

METHODS

The JDistEn method is derived from a joint distance matrix which is constructed from a combination of the distance matrix corresponding to each individual data channel using a geometric mean calculation. A coupled Rössler system and a coupled dual-kinetics neural mass model were used to examine how well JDistEn performed, specifically, its sensitivity for detecting weak coupling, its consistency in gauging coupling strength, and its reliability in processing input of decreased data length. Performance of JDistEn in estimating physiological coupling was further examined with bivariate electroencephalography data from rats and RR interval and diastolic time interval series from human beings. Cross-sample entropy (XSampEn), cross-conditional entropy (XCE), and Shannon entropy of diagonal lines in the joint recurrence plots (JENT) were applied for purposes of comparison.

RESULTS

Simulation results suggest that JDistEn showed markedly higher sensitivity than XSampEn, XCE, and JENT for dynamics in weak coupling, although as the simulation models were more intensively coupled, JDistEn performance was comparable to the three others. In addition, this improved sensitivity was much more pronounced for short datasets. Experimental results further confirmed that JDistEn outperformed XSampEn, XCE, and JENT for detecting weak coupling, especially for short physiological data.

CONCLUSION

This study suggested that our proposed JDistEn could be useful for continuous and even real-time coupling analysis for physiological signals in clinical practice.

Effect of data length and bin numbers on distribution entropy (DistEn) measurement in analyzing healthy aging

Complexity analysis of a given time series is executed using various measures of irregularity, the most commonly used being Approximate entropy (ApEn), Sample entropy (SampEn) and Fuzzy entropy (FuzzyEn). However, the dependence of these measures on the critical parameter of tolerance `r' leads to precarious results, owing to random selections of r. Attempts to eliminate the use of r in entropy calculations introduced a new measure of entropy namely distribution entropy (DistEn) based on the empirical probability distribution function (ePDF). DistEn completely avoids the use of a variance dependent parameter like r and replaces it by a parameter M, which corresponds to the number of bins used in the histogram to calculate it. When tested for synthetic data, M has been observed to produce a minimal effect on DistEn as compared to the effect of r on other entropy measures. Also, DistEn is said to be relatively stable with data length (N) variations, as far as synthetic data is concerned. However, these claims have not been analyzed for physiological data. Our study evaluates the effect of data length N and bin number M on the performance of DistEn using both synthetic and physiologic time series data. Synthetic logistic data of `Periodic' and `Chaotic' levels of complexity and 40 RR interval time series belonging to two groups of healthy aging population (young and elderly) have been used for the analysis. The stability and consistency of DistEn as a complexity measure as well as a classifier have been studied. Experiments prove that the parameters N and M are more influential in deciding the efficacy of DistEn performance in the case of physiologic data than synthetic data. Therefore, a generalized random selection of M for a given data length N may not always be an appropriate combination to yield good performance of DistEn for physiologic data.

Analysis of short-term heart rate and diastolic period variability using a refined fuzzy entropy method

BACKGROUND

Heart rate variability (HRV) has been widely used in the non-invasive evaluation of cardiovascular function. Recent studies have also attached great importance to the cardiac diastolic period variability (DPV) examination. Short-term variability measurement (e.g., 5 min) has drawn increasing attention in clinical practice, since it is able to provide almost immediate measurement results and enables the real-time monitoring of cardiovascular function. However, it is still a contemporary challenge to robustly estimate the HRV and DPV parameters based on short-term recordings.

METHODS

In this study, a refined fuzzy entropy (rFuzzyEn) was developed by substituting a piecewise fuzzy membership function for the Gaussian function in conventional fuzzy entropy (FuzzyEn) measure. Its stability and robustness against additive noise compared with sample entropy (SampEn) and FuzzyEn, were examined by two well-accepted simulation models-the [Formula: see text] noise and the Logistic attractor. The rFuzzyEn was further applied to evaluate clinical short-term (5 min) HRV and DPV of the patients with coronary artery stenosis and healthy volunteers.

RESULTS

Simulation results showed smaller fluctuations in the rFuzzyEn than in SampEn and FuzzyEn values when the data length was decreasing. Besides, rFuzzyEn could distinguish the simulation models with different amount of additive noise even when the percentage of additive noise reached 60%, but neither SampEn nor FuzzyEn showed comparable performance. Clinical HRV analysis did not indicate any significant differences between the patients with coronary artery disease and the healthy volunteers in all the three mentioned entropy measures (all p > 0.20). But clinical DPV analysis showed that the patient group had a significantly higher rFuzzyEn (p < 0.01) than the healthy group. However, no or less significant difference was observed between the two groups in either SampEn (p = 0.14) or FuzzyEn (p = 0.05).

CONCLUSIONS

Our proposed rFuzzyEn outperformed conventional SampEn and FuzzyEn in terms of both stability and robustness against additive noise, particularly when the data set was relatively short. Analysis of DPV using rFuzzyEn may provide more valuable information to assess the cardiovascular states than the other entropy measures and has a potential for clinical application.

Multiscale entropy analysis of biological signals

Traditional approaches to measuring the complexity of biological signals fail to account for the multiple time scales inherent in such time series. These algorithms have yielded contradictory findings when applied to real-world datasets obtained in health and disease states. We describe in detail the basis and implementation of the multiscale entropy (MSE) method. We extend and elaborate previous findings showing its applicability to the fluctuations of the human heartbeat under physiologic and pathologic conditions. The method consistently indicates a loss of complexity with aging, with an erratic cardiac arrhythmia (atrial fibrillation), and with a life-threatening syndrome (congestive heart failure). Further, these different conditions have distinct MSE curve profiles, suggesting diagnostic uses. The results support a general "complexity-loss" theory of aging and disease. We also apply the method to the analysis of coding and noncoding DNA sequences and find that the latter have higher multiscale entropy, consistent with the emerging view that so-called "junk DNA" sequences contain important biological information.