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For: Liu JZ, Mcrae AF, Nyholt DR, Medland SE, Wray NR, Brown KM, Hayward NK, Montgomery GW, Visscher PM, Martin NG, Macgregor S, Macgregor S. A versatile gene-based test for genome-wide association studies. Am J Hum Genet 2010;87:139-45. [PMID: 20598278 DOI: 10.1016/j.ajhg.2010.06.009] [Citation(s) in RCA: 647] [Impact Index Per Article: 43.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2010] [Revised: 06/07/2010] [Accepted: 06/11/2010] [Indexed: 12/14/2022]  Open
Number Cited by Other Article(s)
101
Svishcheva GR, Belonogova NM, Zorkoltseva IV, Kirichenko AV, Axenovich TI. Gene-based association tests using GWAS summary statistics. Bioinformatics 2020;35:3701-3708. [PMID: 30860568 DOI: 10.1093/bioinformatics/btz172] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Revised: 02/12/2019] [Accepted: 03/11/2019] [Indexed: 01/09/2023]  Open
102
Cheng W, Ramachandran S, Crawford L. Estimation of non-null SNP effect size distributions enables the detection of enriched genes underlying complex traits. PLoS Genet 2020;16:e1008855. [PMID: 32542026 PMCID: PMC7316356 DOI: 10.1371/journal.pgen.1008855] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 06/25/2020] [Accepted: 05/13/2020] [Indexed: 12/22/2022]  Open
103
McGuirl MR, Smith SP, Sandstede B, Ramachandran S. Detecting Shared Genetic Architecture Among Multiple Phenotypes by Hierarchical Clustering of Gene-Level Association Statistics. Genetics 2020;215:511-529. [PMID: 32245788 PMCID: PMC7268989 DOI: 10.1534/genetics.120.303096] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 03/31/2020] [Indexed: 12/31/2022]  Open
104
Lin WY, Lin YS, Chan CC, Liu YL, Tsai SJ, Kuo PH. Using Genetic Risk Score Approaches to Infer Whether an Environmental Factor Attenuates or Exacerbates the Adverse Influence of a Candidate Gene. Front Genet 2020;11:331. [PMID: 32457790 PMCID: PMC7225361 DOI: 10.3389/fgene.2020.00331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2020] [Accepted: 03/20/2020] [Indexed: 11/18/2022]  Open
105
Xu Y, Yang XL, Yang XL, Ren YR, Zhuang XY, Zhang L, Zhang XF. Functional Annotations of Single-Nucleotide Polymorphism (SNP)-Based and Gene-Based Genome-Wide Association Studies Show Genes Affecting Keratitis Susceptibility. MEDICAL SCIENCE MONITOR : INTERNATIONAL MEDICAL JOURNAL OF EXPERIMENTAL AND CLINICAL RESEARCH 2020;26:e922710. [PMID: 32450567 PMCID: PMC7269196 DOI: 10.12659/msm.922710] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
106
Deng Y, He T, Fang R, Li S, Cao H, Cui Y. Genome-Wide Gene-Based Multi-Trait Analysis. Front Genet 2020;11:437. [PMID: 32508874 PMCID: PMC7248273 DOI: 10.3389/fgene.2020.00437] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Accepted: 04/08/2020] [Indexed: 11/29/2022]  Open
107
Chasman DI, Giulianini F, Demler OV, Udler MS. Pleiotropy-Based Decomposition of Genetic Risk Scores: Association and Interaction Analysis for Type 2 Diabetes and CAD. Am J Hum Genet 2020;106:646-658. [PMID: 32302534 DOI: 10.1016/j.ajhg.2020.03.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Accepted: 03/25/2020] [Indexed: 12/24/2022]  Open
108
Wang Y, Bandyopadhyay D, Shaffer JR, Wu X. Gene-Based Association Mapping for Dental Caries in The GENEVA Consortium. JOURNAL OF DENTISTRY AND DENTAL MEDICINE 2020;3:156. [PMID: 34622142 PMCID: PMC8494074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
109
Shang L, Smith JA, Zhou X. Leveraging gene co-expression patterns to infer trait-relevant tissues in genome-wide association studies. PLoS Genet 2020;16:e1008734. [PMID: 32310941 PMCID: PMC7192514 DOI: 10.1371/journal.pgen.1008734] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Revised: 04/30/2020] [Accepted: 03/24/2020] [Indexed: 12/11/2022]  Open
110
Vsevolozhskaya OA, Shi M, Hu F, Zaykin DV. DOT: Gene-set analysis by combining decorrelated association statistics. PLoS Comput Biol 2020;16:e1007819. [PMID: 32287273 PMCID: PMC7182280 DOI: 10.1371/journal.pcbi.1007819] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Revised: 04/24/2020] [Accepted: 03/23/2020] [Indexed: 12/12/2022]  Open
111
Harvey PD, Sun N, Bigdeli TB, Fanous AH, Aslan M, Malhotra AK, Lu Q, Hu Y, Li B, Chen Q, Mane S, Miller P, Rajeevan N, Sayward F, Cheung KH, Li Y, Greenwood TA, Gur RE, Braff DL, Brophy M, Pyarajan S, O'Leary TJ, Gleason T, Przygodszki R, Muralidhar S, Gaziano JM, Concato J, Zhao H, Siever LJ. Genome-wide association study of cognitive performance in U.S. veterans with schizophrenia or bipolar disorder. Am J Med Genet B Neuropsychiatr Genet 2020;183:181-194. [PMID: 31872970 DOI: 10.1002/ajmg.b.32775] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Revised: 11/22/2019] [Accepted: 12/09/2019] [Indexed: 12/25/2022]
112
Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error. Commun Biol 2020;3:133. [PMID: 32193507 PMCID: PMC7081241 DOI: 10.1038/s42003-020-0802-y] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Accepted: 01/24/2020] [Indexed: 12/22/2022]  Open
113
Shahamatdar S, He MX, Reyna MA, Gusev A, AlDubayan SH, Van Allen EM, Ramachandran S. Germline Features Associated with Immune Infiltration in Solid Tumors. Cell Rep 2020;30:2900-2908.e4. [PMID: 32130895 PMCID: PMC7082123 DOI: 10.1016/j.celrep.2020.02.039] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2019] [Revised: 08/12/2019] [Accepted: 02/07/2020] [Indexed: 12/13/2022]  Open
114
Zhang M, Suren H, Holliday JA. Phenotypic and Genomic Local Adaptation across Latitude and Altitude in Populus trichocarpa. Genome Biol Evol 2020;11:2256-2272. [PMID: 31298685 PMCID: PMC6735766 DOI: 10.1093/gbe/evz151] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/10/2019] [Indexed: 12/14/2022]  Open
115
Adewuyi EO, Sapkota Y, International Endogene Consortium (IEC), 23andMe Research Team, International Headache Genetics Consortium (IHGC), Auta A, Yoshihara K, Nyegaard M, Griffiths LR, Montgomery GW, Chasman DI, Nyholt DR. Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity. Genes (Basel) 2020;11:E268. [PMID: 32121467 PMCID: PMC7140889 DOI: 10.3390/genes11030268] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2020] [Revised: 02/28/2020] [Accepted: 02/28/2020] [Indexed: 01/02/2023]  Open
116
Guo B, Wu B. Powerful and efficient SNP-set association tests across multiple phenotypes using GWAS summary data. Bioinformatics 2020;35:1366-1372. [PMID: 30239606 DOI: 10.1093/bioinformatics/bty811] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2018] [Revised: 08/29/2018] [Accepted: 09/18/2018] [Indexed: 01/09/2023]  Open
117
Woo YJ, Roussos P, Haroutunian V, Katsel P, Gandy S, Schadt EE, Zhu J. Comparison of brain connectomes by MRI and genomics and its implication in Alzheimer's disease. BMC Med 2020;18:23. [PMID: 32024511 PMCID: PMC7003435 DOI: 10.1186/s12916-019-1488-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Accepted: 12/24/2019] [Indexed: 01/21/2023]  Open
118
Zhou B, Zhao YC, Liu H, Luo S, Amos CI, Lee JE, Li X, Nan H, Wei Q. Novel Genetic Variants of ALG6 and GALNTL4 of the Glycosylation Pathway Predict Cutaneous Melanoma-Specific Survival. Cancers (Basel) 2020;12:E288. [PMID: 31991610 PMCID: PMC7072252 DOI: 10.3390/cancers12020288] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2019] [Revised: 01/21/2020] [Accepted: 01/22/2020] [Indexed: 11/26/2022]  Open
119
Jia J, Li J, Yao X, Zhang Y, Yang X, Wang P, Xia Q, Hakonarson H, Li J. Genetic architecture study of rheumatoid arthritis and juvenile idiopathic arthritis. PeerJ 2020;8:e8234. [PMID: 31988799 PMCID: PMC6969553 DOI: 10.7717/peerj.8234] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Accepted: 11/18/2019] [Indexed: 12/30/2022]  Open
120
Zhang S, Jiang W, Ma RC, Yu W. Region-based interaction detection in genome-wide case-control studies. BMC Med Genomics 2019;12:133. [PMID: 31888606 PMCID: PMC6936067 DOI: 10.1186/s12920-019-0583-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Accepted: 09/10/2019] [Indexed: 01/14/2023]  Open
121
Hill WD, Davies NM, Ritchie SJ, Skene NG, Bryois J, Bell S, Di Angelantonio E, Roberts DJ, Xueyi S, Davies G, Liewald DCM, Porteous DJ, Hayward C, Butterworth AS, McIntosh AM, Gale CR, Deary IJ. Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income. Nat Commun 2019;10:5741. [PMID: 31844048 PMCID: PMC6915786 DOI: 10.1038/s41467-019-13585-5] [Citation(s) in RCA: 94] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 11/11/2019] [Indexed: 01/01/2023]  Open
122
Hill WD, Davies NM, Ritchie SJ, Skene NG, Bryois J, Bell S, Di Angelantonio E, Roberts DJ, Xueyi S, Davies G, Liewald DCM, Porteous DJ, Hayward C, Butterworth AS, McIntosh AM, Gale CR, Deary IJ. Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income. Nat Commun 2019;10:5741. [PMID: 31844048 DOI: 10.1101/573691] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 11/11/2019] [Indexed: 05/25/2023]  Open
123
Tam V, Patel N, Turcotte M, Bossé Y, Paré G, Meyre D. Benefits and limitations of genome-wide association studies. Nat Rev Genet 2019;20:467-484. [PMID: 31068683 DOI: 10.1038/s41576-019-0127-1] [Citation(s) in RCA: 1124] [Impact Index Per Article: 187.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
124
Hingorani AD, Kuan V, Finan C, Kruger FA, Gaulton A, Chopade S, Sofat R, MacAllister RJ, Overington JP, Hemingway H, Denaxas S, Prieto D, Casas JP. Improving the odds of drug development success through human genomics: modelling study. Sci Rep 2019;9:18911. [PMID: 31827124 PMCID: PMC6906499 DOI: 10.1038/s41598-019-54849-w] [Citation(s) in RCA: 123] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Accepted: 11/06/2019] [Indexed: 01/19/2023]  Open
125
Network-Based Functional Prediction Augments Genetic Association To Predict Candidate Genes for Histamine Hypersensitivity in Mice. G3-GENES GENOMES GENETICS 2019;9:4223-4233. [PMID: 31645420 PMCID: PMC6893195 DOI: 10.1534/g3.119.400740] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
126
Zhu Z, Chen B, Na R, Fang W, Zhang W, Zhou Q, Zhou S, Lei H, Huang A, Chen T, Ni D, Gu Y, Liu J, Rao Y, Fang F. Heritability of human visual contour integration-an integrated genomic study. Eur J Hum Genet 2019;27:1867-1875. [PMID: 31363184 PMCID: PMC6871533 DOI: 10.1038/s41431-019-0478-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2019] [Revised: 06/11/2019] [Accepted: 07/16/2019] [Indexed: 11/09/2022]  Open
127
So HC, Chau CKL, Lau A, Wong SY, Zhao K. Translating GWAS findings into therapies for depression and anxiety disorders: gene-set analyses reveal enrichment of psychiatric drug classes and implications for drug repositioning. Psychol Med 2019;49:2692-2708. [PMID: 30569882 DOI: 10.1017/s0033291718003641] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
128
Vsevolozhskaya OA, Hu F, Zaykin DV. Detecting Weak Signals by Combining Small P-Values in Genetic Association Studies. Front Genet 2019;10:1051. [PMID: 31824555 PMCID: PMC6879667 DOI: 10.3389/fgene.2019.01051] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Accepted: 09/30/2019] [Indexed: 01/31/2023]  Open
129
Hecker J, Ruczinski I, Cho MH, Silverman EK, Coull B, Lange C. A flexible and nearly optimal sequential testing approach to randomized testing: QUICK-STOP. Genet Epidemiol 2019;44:139-147. [PMID: 31713269 DOI: 10.1002/gepi.22268] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Revised: 08/24/2019] [Accepted: 09/27/2019] [Indexed: 01/19/2023]
130
Li M, Jiang L, Mak TSH, Kwan JSH, Xue C, Chen P, Leung HCM, Cui L, Li T, Sham PC. A powerful conditional gene-based association approach implicated functionally important genes for schizophrenia. Bioinformatics 2019;35:628-635. [PMID: 30101339 DOI: 10.1093/bioinformatics/bty682] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2018] [Revised: 06/27/2018] [Accepted: 08/06/2018] [Indexed: 02/05/2023]  Open
131
Okada H, Yagi R, Gardeux V, Deplancke B, Hafen E. Sex-dependent and sex-independent regulatory systems of size variation in natural populations. Mol Syst Biol 2019;15:e9012. [PMID: 31777173 PMCID: PMC6878047 DOI: 10.15252/msb.20199012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 10/29/2019] [Accepted: 10/30/2019] [Indexed: 11/21/2022]  Open
132
Alonso-Gonzalez A, Calaza M, Rodriguez-Fontenla C, Carracedo A. Gene-based analysis of ADHD using PASCAL: a biological insight into the novel associated genes. BMC Med Genomics 2019;12:143. [PMID: 31651322 PMCID: PMC6813133 DOI: 10.1186/s12920-019-0593-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Accepted: 09/24/2019] [Indexed: 12/22/2022]  Open
133
Yang Y, Wang X, Ju W, Sun L, Zhang H. Genetic and Expression Analysis of COPI Genes and Alzheimer's Disease Susceptibility. Front Genet 2019;10:866. [PMID: 31608112 PMCID: PMC6761859 DOI: 10.3389/fgene.2019.00866] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 08/19/2019] [Indexed: 11/13/2022]  Open
134
van der Laan SW, Siemelink MA, Haitjema S, Foroughi Asl H, Perisic L, Mokry M, van Setten J, Malik R, Dichgans M, Worrall BB, Samani NJ, Schunkert H, Erdmann J, Hedin U, Paulsson-Berne G, Björkegrenn JLM, de Borst GJ, Asselbergs FW, den Ruijter FW, de Bakker PIW, Pasterkamp G. Genetic Susceptibility Loci for Cardiovascular Disease and Their Impact on Atherosclerotic Plaques. CIRCULATION-GENOMIC AND PRECISION MEDICINE 2019;11:e002115. [PMID: 30354329 PMCID: PMC7664607 DOI: 10.1161/circgen.118.002115] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
135
Rhie A, Son HY, Kwak SJ, Lee S, Kim DY, Lew BL, Sim WY, Seo JS, Kwon O, Kim JI, Jo SJ. Genetic variations associated with response to dutasteride in the treatment of male subjects with androgenetic alopecia. PLoS One 2019;14:e0222533. [PMID: 31525235 PMCID: PMC6746394 DOI: 10.1371/journal.pone.0222533] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Accepted: 08/31/2019] [Indexed: 12/30/2022]  Open
136
Gao F, Yao Y, Zhang Y, Tian J. Integrating Genome-Wide Association Studies With Pathway Analysis and Gene Expression Analysis Highlights Novel Osteoarthritis Risk Pathways and Genes. Front Genet 2019;10:827. [PMID: 31572443 PMCID: PMC6753977 DOI: 10.3389/fgene.2019.00827] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Accepted: 08/12/2019] [Indexed: 01/17/2023]  Open
137
Alonso-Gonzalez A, Calaza M, Rodriguez-Fontenla C, Carracedo A. Novel Gene-Based Analysis of ASD GWAS: Insight Into the Biological Role of Associated Genes. Front Genet 2019;10:733. [PMID: 31447886 PMCID: PMC6696953 DOI: 10.3389/fgene.2019.00733] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2019] [Accepted: 07/11/2019] [Indexed: 11/30/2022]  Open
138
Yoon S, Nguyen HCT, Yoo YJ, Kim J, Baik B, Kim S, Kim J, Kim S, Nam D. Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2. Nucleic Acids Res 2019;46:e60. [PMID: 29562348 PMCID: PMC6007455 DOI: 10.1093/nar/gky175] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2017] [Accepted: 03/13/2018] [Indexed: 01/19/2023]  Open
139
Ni H, Xu M, Zhan GL, Fan Y, Zhou H, Jiang HY, Lu WH, Tan L, Zhang DF, Yao YG, Zhang C. The GWAS Risk Genes for Depression May Be Actively Involved in Alzheimer's Disease. J Alzheimers Dis 2019;64:1149-1161. [PMID: 30010129 DOI: 10.3233/jad-180276] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
140
Bonham LW, Steele NZR, Karch CM, Broce I, Geier EG, Wen NL, Momeni P, Hardy J, Miller ZA, Gorno-Tempini ML, Hess CP, Lewis P, Miller BL, Seeley WW, Manzoni C, Desikan RS, Baranzini SE, Ferrari R, Yokoyama JS. Genetic variation across RNA metabolism and cell death gene networks is implicated in the semantic variant of primary progressive aphasia. Sci Rep 2019;9:10854. [PMID: 31350420 PMCID: PMC6659677 DOI: 10.1038/s41598-019-46415-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Accepted: 06/28/2019] [Indexed: 12/28/2022]  Open
141
Yan Q, Fang Z, Chen W. KMgene: a unified R package for gene-based association analysis for complex traits. Bioinformatics 2019;34:2144-2146. [PMID: 29438558 PMCID: PMC6246171 DOI: 10.1093/bioinformatics/bty066] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Accepted: 02/08/2018] [Indexed: 11/29/2022]  Open
142
Porcu E, Rüeger S, Lepik K, Santoni FA, Reymond A, Kutalik Z. Mendelian randomization integrating GWAS and eQTL data reveals genetic determinants of complex and clinical traits. Nat Commun 2019;10:3300. [PMID: 31341166 PMCID: PMC6656778 DOI: 10.1038/s41467-019-10936-0] [Citation(s) in RCA: 193] [Impact Index Per Article: 32.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Accepted: 06/11/2019] [Indexed: 01/21/2023]  Open
143
Woo YM, Kim S, Park JH, Lee NY, Kim JW, Kim DDH. Evidence that 6q25.1 variant rs6931104 confers susceptibility to chronic myeloid leukemia through RMND1 regulation. PLoS One 2019;14:e0218968. [PMID: 31237926 PMCID: PMC6592567 DOI: 10.1371/journal.pone.0218968] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Accepted: 06/12/2019] [Indexed: 11/19/2022]  Open
144
Feng Y, Liu H, Duan B, Liu Z, Abbruzzese J, Walsh KM, Zhang X, Wei Q. Potential functional variants in SMC2 and TP53 in the AURORA pathway genes and risk of pancreatic cancer. Carcinogenesis 2019;40:521-528. [PMID: 30794721 PMCID: PMC6556704 DOI: 10.1093/carcin/bgz029] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2018] [Revised: 01/02/2019] [Accepted: 02/21/2019] [Indexed: 12/13/2022]  Open
145
Wang G, Zhang DF, Jiang HY, Fan Y, Ma L, Shen Z, Bi R, Xu M, Tan L, Shan B, Yao YG, Feng T. Mutation and association analyses of dementia-causal genes in Han Chinese patients with early-onset and familial Alzheimer's disease. J Psychiatr Res 2019;113:141-147. [PMID: 30954774 DOI: 10.1016/j.jpsychires.2019.03.026] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Revised: 03/22/2019] [Accepted: 03/27/2019] [Indexed: 12/13/2022]
146
Hecker J, Prokopenko D, Lange C, Fier HL. PolyGEE: a generalized estimating equation approach to the efficient and robust estimation of polygenic effects in large-scale association studies. Biostatistics 2019;19:295-306. [PMID: 28968646 PMCID: PMC5991211 DOI: 10.1093/biostatistics/kxx040] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2017] [Accepted: 07/21/2017] [Indexed: 11/17/2022]  Open
147
Xiang B, Wang Q, Lei W, Li M, Li Y, Zhao L, Ma X, Wang Y, Yu H, Li X, Meng Y, Guo W, Deng W, Ren H, Li T. Genes in immune pathways associated with abnormal white matter integrity in first-episode and treatment-naïve patients with schizophrenia. Br J Psychiatry 2019;214:281-287. [PMID: 30722794 DOI: 10.1192/bjp.2018.297] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
148
Wei CJ, Cui P, Li H, Lang WJ, Liu GY, Ma XF. Shared genes between Alzheimer's disease and ischemic stroke. CNS Neurosci Ther 2019;25:855-864. [PMID: 30859738 PMCID: PMC6630005 DOI: 10.1111/cns.13117] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2018] [Revised: 02/12/2019] [Accepted: 02/13/2019] [Indexed: 02/06/2023]  Open
149
Carvalho CM, Pan PM, Ota VK, Spindola LM, Xavier G, Santoro ML, Mazzotti DR, Pellegrino R, Hakonarson H, Rohde LA, Miguel EC, Gadelha A, Bressan RA, Belangero SI. Effects of the interaction between genetic factors and maltreatment on child and adolescent psychiatric disorders. Psychiatry Res 2019;273:575-577. [PMID: 30716596 DOI: 10.1016/j.psychres.2019.01.078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Revised: 01/04/2019] [Accepted: 01/19/2019] [Indexed: 11/25/2022]
150
Sun R, Hui S, Bader GD, Lin X, Kraft P. Powerful gene set analysis in GWAS with the Generalized Berk-Jones statistic. PLoS Genet 2019;15:e1007530. [PMID: 30875371 PMCID: PMC6436759 DOI: 10.1371/journal.pgen.1007530] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2018] [Revised: 03/27/2019] [Accepted: 02/28/2019] [Indexed: 11/19/2022]  Open
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