Are natural microcosms useful model systems for ecology?

Effects of Seasonality and Dispersal on the Ciliate Community Inhabiting Bromeliad Phytotelmata in Riparian Vegetation of a Large Tropical River

This study evaluated the influence of rainfall amount on the abundance, species richness, and species occurrence and abundance distribution of the ciliate community associated with the bromeliad Aechmea distichantha. The plants were collected from a rock wall of about 10-km long at the left bank of Paraná River. We assessed the effects of both spatial and temporal variables on the community attributes, as well as whether plants geographically closer have a similar abundance distribution and species composition. The ciliate community was substantially distinct between both hydrological periods, with greater values of species richness and abundance in the rainy period. No spatial structuring (differences in the species occurrence and abundance distribution among strata) or geographical similarity (similarity in ciliate species composition among the plants) was found. Multiple regression analysis showed a positive relationship only between the ciliate abundances and water volumes for both periods. Although few of the formulated predictions were confirmed, our study provides valuable information on the ecological aspects of the ciliate community inhabiting bromeliad phytotelmata.

Parentage of overlapping offspring of an arboreal-breeding frog with no nest defense: implications for nest site selection and reproductive strategy

Overlapping offspring occurs when eggs are laid in a nest containing offspring from earlier reproduction. Earlier studies showed that the parentage is not always obvious due to difficulties in field observation and/or alternative breeding tactics. To unveil the parentage between overlapping offspring and parents is critical in understanding oviposition site selection and the reproductive strategies of parents. Amplectant pairs of an arboreal-breeding frog, Kurixalus eiffingeri, lay eggs in tadpole-occupied nests where offspring of different life stages (embryos and tadpoles) coexist. We used five microsatellite DNA markers to assess the parentage between parents and overlapping offspring. We also tested the hypothesis that the male or female frog would breed in the same breeding site because of the scarcity of nest sites. Results showed varied parentage patterns, which may differ from the phenomenon of overlapping egg clutches reported earlier. Parentage analyses showed that only 58 and 25% of the tadpole-occupied stumps were reused by the same male and female respectively, partially confirming our prediction. Re-nesting by the same individual was more common in males than females, which is most likely related to the cost of tadpole feeding and/or feeding schemes of females. On the other hand, results of parentage analyses showed that about 42 and 75% of male and female respectively bred in tadpole-occupied stumps where tadpoles were genetically unrelated. Results of a nest-choice experiment revealed that 40% of frogs chose tadpole-occupied bamboo cups when we presented identical stumps, without or with tadpoles, suggesting that the habitat saturation hypothesis does not fully explain why frogs used the tadpole-occupied stumps. Several possible benefits of overlapping offspring with different life stages were proposed. Our study highlights the importance of integrating molecular data with field observations to better understand the reproductive biology and nest site selection of anuran amphibians.

A multifaceted trophic cascade in a detritus-based system: density-, trait-, or processing-chain-mediated effects?

We investigated three pathways by which predators on an intermediate trophic level may produce a trophic cascade in detritus-based systems. Predators may increase lower trophic levels (bacteria) by reducing density of bacteriovores, by altering behavior of bacteriovores, and by processing living bacteriovores into carcasses, feces, and dissolved nutrients that are substrates for bacteria. We tested these pathways in laboratory experiments with mosquitoes in water-filled containers. Larval Toxorhynchites rutilus prey on larval Aedes triseriatus, which feed on bacteria. Using containers stocked with oak leaf infusion as a bacterial substrate, we compared bacterial productivity at 7 and 14 days for: prey alone; prey with a predator; and prey with predation cues but no predator. Controls contained no larvae, either with predation cues or without cues. Predation cues in the control treatment increased bacterial abundance at 7 days, but this effect waned by 14 days. Aedes triseriatus larvae reduced bacterial abundance significantly at 14 days. Predator cues and real predation both eliminated the negative effect of A. triseriatus on bacterial abundance. Predation cues reduced survivorship of A. triseriatus larvae at 14 days, however this effect was smaller than the effect of real predation. We further tested effects of residues from predation as cues or as detritus in a second experiment in which A. triseriatus were killed at similar rates by: real predators; mechanical damage without the predator and carcasses left as detritus; or mechanical damage and carcasses removed. No prey larvae were killed in controls. Bacterial productivity was greater with real predation than in all other treatments and greater when prey larvae were killed or killed and removed, than in controls. Thus we find evidence that all three pathways contribute to the trophic cascade from T. rutilus to bacteria in tree hole systems.

Experimentally testing and assessing the predictive power of species assembly rules for tropical canopy ants

Understanding how species assemble into communities is a key goal in ecology. However, assembly rules are rarely tested experimentally, and their ability to shape real communities is poorly known. We surveyed a diverse community of epiphyte-dwelling ants and found that similar-sized species co-occurred less often than expected. Laboratory experiments demonstrated that invasion was discouraged by the presence of similarly sized resident species. The size difference for which invasion was less likely was the same as that for which wild species exhibited reduced co-occurrence. Finally we explored whether our experimentally derived assembly rules could simulate realistic communities. Communities simulated using size-based species assembly exhibited diversities closer to wild communities than those simulated using size-independent assembly, with results being sensitive to the combination of rules employed. Hence, species segregation in the wild can be driven by competitive species assembly, and this process is sufficient to generate observed species abundance distributions for tropical epiphyte-dwelling ants.

The relative influence of habitat amount and configuration on genetic structure across multiple spatial scales

Despite strong interest in understanding how habitat spatial structure shapes the genetics of populations, the relative importance of habitat amount and configuration for patterns of genetic differentiation remains largely unexplored in empirical systems. In this study, we evaluate the relative influence of, and interactions among, the amount of habitat and aspects of its spatial configuration on genetic differentiation in the pitcher plant midge, Metriocnemus knabi. Larvae of this species are found exclusively within the water-filled leaves of pitcher plants (Sarracenia purpurea) in a system that is naturally patchy at multiple spatial scales (i.e., leaf, plant, cluster, peatland). Using generalized linear mixed models and multimodel inference, we estimated effects of the amount of habitat, patch size, interpatch distance, and patch isolation, measured at different spatial scales, on genetic differentiation (F_ST) among larval samples from leaves within plants, plants within clusters, and clusters within peatlands. Among leaves and plants, genetic differentiation appears to be driven by female oviposition behaviors and is influenced by habitat isolation at a broad (peatland) scale. Among clusters, gene flow is spatially restricted and aspects of both the amount of habitat and configuration at the focal scale are important, as is their interaction. Our results suggest that both habitat amount and configuration can be important determinants of genetic structure and that their relative influence is scale dependent.

Effects of a ciliate protozoa predator on microbial communities in pitcher plant (Sarracenia purpurea) leaves

The aquatic communities found within the water filled leaves of the pitcher plant, Sarracenia purpurea, have a simple trophic structure providing an ideal system to study microscale interactions between protozoan predators and their bacterial prey. In this study, replicate communities were maintained with and without the presence of the bactivorous protozoan, Colpoda steinii, to determine the effects of grazing on microbial communities. Changes in microbial (Archaea and Bacteria) community structure were assessed using iTag sequencing of 16S rRNA genes. The microbial communities were similar with and without the protozoan predator, with>1000 species. Of these species, Archaea were negligible, with Bacteria comprising 99.99% of the microbial community. The Proteobacteria and Bacteroidetes were the most dominant phyla. The addition of a protozoan predator did not have a significant effect on microbial evenness nor richness. However, the presence of the protozoan did cause a significant shift in the relative abundances of a number of bacterial species. This suggested that bactivorous protozoan may target specific bacterial species and/or that certain bacterial species have innate mechanisms by which they evade predators. These findings help to elucidate the effect that trophic structure perturbations have on predator prey interactions in microbial systems.

Intermittent pool beds are permanent cyclic habitats with distinct wet, moist and dry phases

Recognition that intermittent pools are a single habitat phase of an intermittent pool bed that cycles between aquatic and terrestrial habitat greatly enhances their usefulness for addressing general questions in ecology. The aquatic phase has served as a model system in many ecological studies, because it has distinct habitat boundaries in space and time and is an excellent experimental system, but the aquatic to terrestrial transition and terrestrial phase remain largely unstudied. We conducted a field experiment within six replicate natural intermittent pool beds to explore macroinvertebrate community dynamics during the transition from aquatic to terrestrial habitat and during the terrestrial phase. We monitored and compared macroinvertebrate communities within leaf packs that i) remained wet, ii) underwent drying (i.e., started wet and then dried), and iii) remained dry. Our results show that i) a diverse macroinvertebrate community inhabits all phases of intermittent pool beds, ii) pool drying involves colonization by an assemblage of macroinvertebrates not recorded in permanently terrestrial leaf packs, iii) the community within dried leaf packs remains distinct from that of permanently terrestrial leaf packs for an extended period following drying (possibly until subsequent refilling), and iv) there are likely to be strong spatial and temporal resource linkages between the aquatic and terrestrial communities. The unique environmental characteristics of intermittent pool beds, which repeatedly cycle from aquatic to terrestrial habitat, should continue to make them valuable study systems.

Climate and atmosphere simulator for experiments on ecological systems in changing environments

Grand challenges in global change research and environmental science raise the need for replicated experiments on ecosystems subjected to controlled changes in multiple environmental factors. We designed and developed the Ecolab as a variable climate and atmosphere simulator for multifactor experimentation on natural or artificial ecosystems. The Ecolab integrates atmosphere conditioning technology optimized for accuracy and reliability. The centerpiece is a highly contained, 13-m(3) chamber to host communities of aquatic and terrestrial species and control climate (temperature, humidity, rainfall, irradiance) and atmosphere conditions (O2 and CO2 concentrations). Temperature in the atmosphere and in the water or soil column can be controlled independently of each other. All climatic and atmospheric variables can be programmed to follow dynamical trajectories and simulate gradual as well as step changes. We demonstrate the Ecolab's capacity to simulate a broad range of atmospheric and climatic conditions, their diurnal and seasonal variations, and to support the growth of a model terrestrial plant in two contrasting climate scenarios. The adaptability of the Ecolab design makes it possible to study interactions between variable climate-atmosphere factors and biotic disturbances. Developed as an open-access, multichamber platform, this equipment is available to the international scientific community for exploring interactions and feedbacks between ecological and climate systems.

Intrinsic and extrinsic drivers of succession: Effects of habitat age and season on an aquatic insect community

1. Classical studies of succession, largely dominated by plant community studies, focus on intrinsic drivers of change in community composition, such as interspecific competition and changes to the abiotic environment. They often do not consider extrinsic drivers of colonization, such as seasonal phenology, that can affect community change. 2. We investigated both intrinsic and extrinsic drivers of succession for dipteran communities that occupy ephemeral pools, such as those in artificial containers. By initiating communities at different times in the season and following them over time, we compared the relative importance of intrinsic (i.e., habitat age) vs. extrinsic (i.e., seasonal phenology) drivers of succession. 3. We placed water-filled artificial containers in a deciduous forest with 20 containers initiated in each of three months. Containers were sampled weekly to assess community composition. Repeated-measures mixed-effects analysis of community correspondence analysis (CA) scores enabled us to partition intrinsic and extrinsic effects on succession. Covariates of temperature and precipitation were also tested. 4. Community trajectories (as defined by CA) differed significantly with habitat age and season, indicating that both intrinsic and extrinsic effects influence succession patterns. Comparisons of AICcs showed that habitat age was more important than season for species composition. Temperature and precipitation did not explain composition changes beyond those explained by habitat age and season. 5. Quantification of relative strengths of intrinsic and extrinsic effects on succession in dipteran and other ephemeral communities enables us to disentangle processes that must be understood for predicting changes in community composition.

Community composition has greater impact on the functioning of marine phytoplankton communities than ocean acidification

Ecosystem functioning is simultaneously affected by changes in community composition and environmental change such as increasing atmospheric carbon dioxide (CO2 ) and subsequent ocean acidification. However, it largely remains uncertain how the effects of these factors compare to each other. Addressing this question, we experimentally tested the hypothesis that initial community composition and elevated CO2 are equally important to the regulation of phytoplankton biomass. We full-factorially exposed three compositionally different marine phytoplankton communities to two different CO2 levels and examined the effects and relative importance (ω(2) ) of the two factors and their interaction on phytoplankton biomass at bloom peak. The results showed that initial community composition had a significantly greater impact than elevated CO2 on phytoplankton biomass, which varied largely among communities. We suggest that the different initial ratios between cyanobacteria, diatoms, and dinoflagellates might be the key for the varying competitive and thus functional outcome among communities. Furthermore, the results showed that depending on initial community composition elevated CO2 selected for larger sized diatoms, which led to increased total phytoplankton biomass. This study highlights the relevance of initial community composition, which strongly drives the functional outcome, when assessing impacts of climate change on ecosystem functioning. In particular, the increase in phytoplankton biomass driven by the gain of larger sized diatoms in response to elevated CO2 potentially has strong implications for nutrient cycling and carbon export in future oceans.

Oil road effects on the anuran community of a high canopy tank bromeliad (Aechmea zebrina) in the upper Amazon basin, Ecuador

Tropical forest canopies are among the most species-rich terrestrial habitats on earth and one of the remaining relatively unexplored biotic frontiers. Epiphytic bromeliads provide microhabitat for a high diversity of organisms in tropical forest canopies and are considered a keystone resource. A number of amphibians inhabit these phytotelmata, yet their ecological role and status in forest canopies remains unknown. For this study, anurans were collected from an upper canopy tank bromeliad (Aechmea zebrina) at ∼20–45 m (x¯ = 33 m) above the forest floor. Bromeliads were sampled from trees located near trails in undisturbed primary rainforest and oil access roads in the Yasuní Biosphere Reserve of Amazonian Ecuador. We collected 95 anurans representing 10 species from 160 bromeliads in 32 trees. We used generalized linear mixed models to assess the effects of disturbance and habitat factors on the occupancy and abundance of anurans collected. Bromeliads in forest along oil roads had a lower occupancy and abundance of anurans than those in undisturbed forest, a somewhat unexpected result due to the intactness and quality of forest adjacent to the roads. Recorded habitat variables had no relationship with occupancy or abundance of anurans, and did not differ significantly between treatments. Our findings reveal that even the minimal footprint of natural resource extraction operations, primarily roads, in rainforest environments can have significant negative impacts on the unique upper canopy anuran community. Based on these results, we recommend that natural resource development treat rainforest habitat as an offshore system where roads are not used, employ industry best practice guidelines, and current access roads be protected from colonization and further deforestation.

Organic-matter loading determines regime shifts and alternative states in an aquatic ecosystem

Slow changes in underlying state variables can lead to "tipping points," rapid transitions between alternative states ("regime shifts") in a wide range of complex systems. Tipping points and regime shifts routinely are documented retrospectively in long time series of observational data. Experimental induction of tipping points and regime shifts is rare, but could lead to new methods for detecting impending tipping points and forestalling regime shifts. By using controlled additions of detrital organic matter (dried, ground arthropod prey), we experimentally induced a shift from aerobic to anaerobic states in a miniature aquatic ecosystem: the self-contained pools that form in leaves of the carnivorous northern pitcher plant, Sarracenia purpurea. In unfed controls, the concentration of dissolved oxygen ([O2]) in all replicates exhibited regular diurnal cycles associated with daytime photosynthesis and nocturnal plant respiration. In low prey-addition treatments, the regular diurnal cycles of [O2] were disrupted, but a regime shift was not detected. In high prey-addition treatments, the variance of the [O2] time series increased until the system tipped from an aerobic to an anaerobic state. In these treatments, replicate [O2] time series predictably crossed a tipping point at ~45 h as [O2] was decoupled from diurnal cycles of photosynthesis and respiration. Increasing organic-matter loading led to predictable changes in [O2] dynamics, with high loading consistently driving the system past a well-defined tipping point. The Sarracenia microecosystem functions as a tractable experimental system in which to explore the forecasting and management of tipping points and alternative regimes.

Macrofaunal responses to edges are independent of habitat-heterogeneity in experimental landscapes

Despite edges being common features of many natural habitats, there is little general understanding of the ways assemblages respond to them. Every edge between two contrasting habitats has characteristics governed by the composition of adjoining habitats and/or by the nature of any transitions between them. To develop better explanatory theory, we examined the extent to which edges act independently of the composition of the surrounding landscape and to which transitions between different types of habitats affect assemblages. Using experimental landscapes, we measured the responses of assemblages of marine molluscs colonising different experimental landscapes constructed with different compositions (i.e. different types of habitats within the landscape) and different types of transitions between habitats (i.e. sharp vs gradual). Edge effects (i.e. proximity to the edge of the landscape) were independent of the internal composition of experimental landscape; fewer species were found near the edges of landscapes. These reductions may be explained by differences in differential larval settlement between edges and interiors of experimental landscapes. We also found that the sharpness of transitions influenced the magnitude of interactions in the different types of habitats in experimental landscapes, most probably due to the increased number of species in areas of transition between two habitats. Our experiments allowed the effects of composition and transitions between habitats to be disentangled from those of proximity to edges of landscapes. Understanding and making predictions about the responses by species to edges depends on understanding not only the nature of transitions across boundaries, but also the landscape in which the edges are embedded.

Using testate amoeba as potential biointegrators of atmospheric deposition of phenanthrene (polycyclic aromatic hydrocarbon) on "moss/soil interface-testate amoeba community" microecosystems

Microecosystem models could allow understanding of the impacts of pollutants such as polycyclic aromatic hydrocarbons on ecosystem functioning. We studied the effects of atmospheric phenanthrene (PHE) deposition on the microecosystem "moss/soil interface-testate amoebae (TA) community" over a 1-month period under controlled conditions. We found that PHE had an impact on the microecosystem. PHE was accumulated by the moss/soil interface and was significantly negatively correlated (0.4 < r(2) < 0.7) with total TA abundance and the abundance of five species of TA (Arcella sp., Centropyxis sp., Nebela lageniformis, Nebela tincta and Phryganella sp.). Among sensitive species, species with a superior trophic level (determined by the test aperture size) were more sensitive than other TA species. This result suggests that links between microbial groups in the microecosystems are disrupted by PHE and that this pollutant had effects both direct (ingestion of the pollutant or direct contact with cell) and/or indirect (decrease of prey) on the TA community. The TA community seems to offer a potential integrative tool to understand mechanisms and processes by which the atmospheric PHE deposition affects the links between microbial communities.

The role of temperature and dispersal in moss-microarthropod community assembly after a catastrophic event

There is a clear crisis in the maintenance of biodiversity. It has been generated by a multitude of factors, notably habitat loss, now compounded by the effects of climate change. Predicted changes in climate include increased severity and frequency of extreme climatic events. To manage landscapes, an understanding of the processes that allow recovery from these extreme events is required. Understanding these landscape-scale processes of community assembly and disassembly is hindered by the large scales at which they operate. Model systems provide a means of studying landscape scale processes at tractable scales. Here, we assess the combined effects of temperature and habitat-patch isolation on assembly of naturally diverse moss microarthropod communities after a high-temperature event. We show that community assembly depends on temperature and on degree of habitat isolation. Heated communities were heavily dominated in abundance by two species, one of them relatively large. The resulting size-structure is unlike that seen in the field. Community composition in habitat fragments appears also to have been influenced by the source pool of recolonizing fauna. Our results highlight the value of dispersal in disturbed landscapes and the potential for habitat connectivity to buffer communities from the effects of climate change.

Cross-habitat predation in Nepenthes gracilis: the red crab spider Misumenops nepenthicola influences abundance of pitcher dipteran larvae

Phytotelmata (plant-held waters) are useful ecological models for studying predator–prey interactions. However, the ability of terrestrial predators to influence organism abundance within phytotelmata remains poorly studied. We investigated the predation of two pitcher-dwelling spiders, the red crab spider Misumenops nepenthicola and the yellow crab spider Thomisus nepenthiphilus (Araneae: Thomisidae) on dipteran larval abundance by manipulating their presence in the pitcher Nepenthes gracilis. Lower abundance in the larvae of the mosquito Tripteriodes spp. and increased spider mass were recorded after M. nepenthicola was introduced into laboratory-maintained pitchers (n = 10); T. nepenthiphilus did not affect larval abundance and a decrease in spider mass was recorded. Further investigations on two other dipteran larval species, the scuttle fly Endonepenthia schuitemakeri and gall midges Lestodiplosis spp., reported reduced numbers with the introduction of M. nepenthicola. We further tested this predation on dipteran larval abundance by its introduction, removal, and re-introduction to pitchers in the field (n = 42) over 1 mo. The spider's absence and presence significantly influenced larval numbers: all four dipteran species reported a significant decrease in numbers after M. nepenthicola was introduced. These results are one of the first to demonstrate the influence of a terrestrial phytotelm forager on the abundance of pitcher organisms via direct predation, reiterating the ecological importance of terrestrial phytotelm predators on phytotelm community structure and dynamics.

Temporal variation of β-diversity and assembly mechanisms in a bacterial metacommunity

The turnover of community composition across space, β-diversity, is influenced by different assembly mechanisms, which place varying weight on local habitat factors, such as environmental conditions and species interactions, and regional factors such as dispersal and history. Several assembly mechanisms may function simultaneously; however, little is known about how their importance changes over time and why. Here, we implemented a field survey where we sampled a bacterial metacommunity consisting of 17 rock pools located at the Swedish Baltic Sea coast at 11 occasions during 1 year. We determined to which extent communities were structured by different assembly mechanisms using variation partitioning and studied changes in β-diversity across environmental gradients over time. β-Diversity was highest at times of high overall productivity and environmental heterogeneity in the metacommunity, at least partly due to species sorting, that is, selection of taxa by the prevailing environmental conditions. In contrast, dispersal-driven assembly mechanisms were primarily detected at times when β-diversity was relatively low. There were no indications for strong and persistent differences in community composition or β-diversity between permanent and temporary pools, indicating that the physical disturbance regime is of relatively minor importance. In summary, our study clearly suggests that there are temporal differences in the relative importance of different assembly mechanisms related to abiotic factors and shows that the temporal variability of those factors is important for a more complete understanding of bacterial metacommunity dynamics.

Mosquito community structure in phytotelmata from a South American temperate wetland

Phytotelmata, or plant-held waters, are considered to be good model systems for the study of community ecology. The fauna of these natural container habitats, particularly the mosquitoes, have been extensively investigated in tropical regions, but there is little known about them in temperate South America. We assessed the structure of immature mosquito communities in leaf axils, tree holes, and bamboo stumps from a temperate wetland of Argentina. A total of 4,330 immature mosquitoes were collected among the 2,606 phytotelmata inspected. Leaf axils of eight plant species and tree holes were larval habitats for nine mosquito species belonging to the genus Culex, Wyeomyia, Isostomyia, and Toxorhynchites. The mosquito communities showed richness ranging from one to four species. Marked differences were detected in the plant specificity for the species collected. Some of them were exclusively found in one plant species (Isostomyia paranensis in Scirpus giganteus), whereas others were collected in up to five plant species but belonging to the same phytotelm class, the leaf axils. Those from tree holes are well-known dwellers of artificial containers and ground water habitats, such as Culex pipiens. Our results support the idea of low mosquito richness in phytotelmata from temperate regions in comparison with tropical areas, but the observed specificity patterns echo the findings of tropical forests.

Patch size matters more than dispersal distance in a mainland-island metacommunity

Micro-arthropods in moss patches have been used as a model system to investigate the effects of habitat destruction and fragmentation on population viability and ecosystem functioning. Previous assessments of the sensitivity to fragmentation and the effectiveness of mitigating landscape structures have to some extent been contradictory, one possible reason being a lack of knowledge of the realised dispersal distances of the species involved. We investigated the dispersal capabilities of oribatid mites (Acari: Oribatida) and springtails (Collembola) in an experimentally fragmented system consisting of bryophytes on a bare rock surface. We used defaunated patches that were recolonized from populated patches nearby as well as from a mainland surrounding the experimental arena, during 10 weeks in summer. We measured within-mainland, mainland-to-island, and island-to-island dispersal, and found that: (1) Oribatid mites were severely dispersal limited within the time frame of the experiment, even at isolation distances of only 5 cm; (2) springtails did not show any dispersal limitation over distances as far as 300 cm; (3) despite the observed dispersal limitation, the mainland had a relatively large influence on microarthropod occurrence, even at 300 cm distance; and (4) the dispersal rates were high enough for both species sorting and-in the case of collembolans-mass effects processes to occur. Our results indicate that fragmentation can strongly influence species occurrence and abundance in natural systems that are limited by dispersal. They also show that the presence of a distant mainland can override the influence of nearby habitat patches on local diversity and abundance.

Are algae relevant to the detritus-based food web in tank-bromeliads?

We assessed the occurrence of algae in five species of tank-bromeliads found in contrasting environmental sites in a Neotropical, primary rainforest around the Nouragues Research Station, French Guiana. The distributions of both algal abundance and biomass were examined based on physical parameters, the morphological characteristics of bromeliad species and with regard to the structure of other aquatic microbial communities held in the tanks. Algae were retrieved in all of the bromeliad species with mean densities ranging from ∼10² to 10⁴ cells/mL. Their biomass was positively correlated to light exposure and bacterial biomass. Algae represented a tiny component of the detrital food web in shaded bromeliads but accounted for up to 30 percent of the living microbial carbon in the tanks of Catopsis berteroniana, located in a highly exposed area. Thus, while nutrient supplies are believed to originate from wind-borne particles and trapped insects (i.e., allochtonous organic matter), our results indicate that primary producers (i.e., autochtonous organic matter) are present in this insectivorous bromeliad. Using a 24-h incubation of size-fractionated and manipulated samples from this plant, we evaluated the impact of mosquito foraging on algae, other microorganisms and rotifers. The prey assemblages were greatly altered by the predation of mosquito larvae. Grazing losses indicated that the dominant algal taxon, Bumilleriopsis sp., like protozoa and rotifers, is a significant part of the diet of mosquito larvae. We conclude that algae are a relevant functional community of the aquatic food web in C. berteroniana and might form the basis of a complementary non-detrital food web.

The microbial Phyllogeography of the carnivorous plant Sarracenia alata

Carnivorous pitcher plants host diverse microbial communities. This plant-microbe association provides a unique opportunity to investigate the evolutionary processes that influence the spatial diversity of microbial communities. Using next-generation sequencing of environmental samples, we surveyed microbial communities from 29 pitcher plants (Sarracenia alata) and compare community composition with plant genetic diversity in order to explore the influence of historical processes on the population structure of each lineage. Analyses reveal that there is a core S. alata microbiome, and that it is similar in composition to animal gut microfaunas. The spatial structure of community composition in S. alata (phyllogeography) is congruent at the deepest level with the dominant features of the landscape, including the Mississippi river and the discrete habitat boundaries that the plants occupy. Intriguingly, the microbial community structure reflects the phylogeographic structure of the host plant, suggesting that the phylogenetic structure of bacterial communities and population genetic structure of their host plant are influenced by similar historical processes.

Effects of connectivity and recurrent local disturbances on community structure and population density in experimental metacommunities

Metacommunity theory poses that the occurrence and abundance of species is a product of local factors, including disturbance, and regional factors, like dispersal among patches. While metacommunity ideas have been broadly tested there is relatively little work on metacommunities subject to disturbance. We focused on how localized disturbance and dispersal interact to determine species composition in metacommunities. Experiments conducted in simple two-patch habitats containing eight protozoa and rotifer species tested how dispersal altered community composition in both communities that were disturbed and communities that connected to refuge communities not subject to disturbance. While disturbance lowered population densities, in disturbed patches connected to undisturbed patches this was ameliorated by immigration. Furthermore, species with high dispersal abilities or growth rates showed the fastest post-disturbance recovery in presence of immigration. Connectivity helped to counteract the negative effect of disturbances on local populations, allowing mass-effect-driven dispersal of individuals from undisturbed to disturbed patches. In undisturbed patches, however, local population sizes were not significantly reduced by emigration. The absence of a cost of dispersal for undisturbed source populations is consistent with a lack of complex demography in our system, such as age- or sex-specific emigration. Our approach provides an improved way to separate components of population growth from organisms' movement in post-disturbance recovery of (meta)communities. Further studies are required in a variety of ecosystems to investigate the transient dynamics resulting from disturbance and dispersal.

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

Many studies have shown that species sorting, that is, the selection by local environmental conditions is important for the composition and assembly of bacterial communities. On the other hand, there are other studies that could show that bacterial communities are neutrally assembled. In this study, we implemented a microcosm experiment with the aim to determine, at the same time, the importance of species sorting and neutral processes for bacterial community assembly during the colonisation of new, that is, sterile, habitats, by atmospheric bacteria. For this we used outdoor microcosms, which contained sterile medium from three different rock pools representing different environmental conditions, which were seeded by rainwater bacteria. We found some evidence for neutral assembly processes, as almost every 4th taxon growing in the microcosms was also detectable in the rainwater sample irrespective of the medium. Most of these taxa belonged to widespread families with opportunistic growth strategies, such as the Pseudomonadaceae and Comamonadaceae, indicating that neutrally assembled taxa may primarily be generalists. On the other hand, we also found evidence for species sorting, as one out of three media selected a differently composed bacterial community. Species sorting effects were relatively weak and established themselves via differences in relative abundance of generalists among the different media, as well as media-specific occurrences of a few specific taxa. In summary, our results suggest that neutral and species sorting processes interact during the assembly of bacterial communities and that their importance may differ depending on how many generalists and specialists are present in a community.

Experimental evolution of protozoan traits in response to interspecific competition

Decades of experiments have demonstrated the ecological effect of competition, but experimental evidence for competitive effects on trait evolution is rare. I measured the evolution of six protozoan traits in response to competitors from the inquiline community of pitcher plants. Replicate populations of Colpoda, a ciliated protozoan, were allowed to evolve in response to intra- and interspecific competition for 20 days (approximately 100 generations), before traits were measured in two common garden environments. Populations that evolved with interspecific competition had smaller cell sizes, produced fewer cysts and had higher population growth rates relative to populations grown in monoculture. The presence of interspecific competitors led to differential lineage sorting, most likely by increasing the strength of selection. These results are the first to demonstrate protozoan evolution in response to competition and may have implications for species coexistence in this system.

Effects of urban particulate deposition on microbial communities living in bryophytes: an experimental study

Our previous in situ study showed that bryophyte-microorganism complexes were affected by particulate atmospheric pollution. Here, the effect of urban particulate wet deposits on microbial communities living in bryophytes was studied under controlled conditions. An urban particulate solution was prepared with particles extracted from analyzer' filters and nebulized on bryophytes in treatments differing in frequency and quantity. The bryophytes did not accumulate metallic trace elements, which were present in very weak concentrations. However, in treated microcosms the total microbial biomass and the biomasses of cyanobacteria, active testate amoebae and fungi significantly decreased in response to the deposition of particles. These results confirm that microbial communities living in terrestrial bryophytes could be more sensitive indicators of atmospheric pollution than bryophytes. Moreover, they suggest that unicellular predators--such as testate amoebae--could be especially useful microbial indicators, since they seem to be both directly and indirectly affected by pollution.

Food-web composition affects cross-ecosystem interactions and subsidies

1. Ecosystems may affect each other through trophic interactions that cross ecosystem boundaries as well as via the transfer of subsidies, but these effects can vary depending on the identity of species involved in the interaction. 2. In this study, we manipulated two terrestrial bromeliad-living spider species (Aglaoctenus castaneus, Corinna gr. rubripes) that have variable hunting modes, to test their individual and combined effects on aquatic invertebrate community structure and ecosystem processes (i.e. decomposition rate and nitrogen cycling). We predicted that these terrestrial predators can affect aquatic invertebrates and nutrient dynamics within water-filled bromeliads. 3. Aglaoctenus spiders reduced the richness, abundance and biomass of aquatic insect larvae via consumptive or non-consumptive effects on ovipositing terrestrial adults, but effects of the two spider species in combination were usually the linear average of their monoculture effects. In contrast, invertebrates with entirely aquatic life cycles were unaffected or facilitated by spiders. Spiders did not affect either net detritivore biomass or the flux of detrital nitrogen to the bromeliad. Instead, Corinna spiders contributed allochthonous nitrogen to bromeliads. 4. Our results provide the novel observations that predators in one ecosystem not only directly reduce taxa whose life cycles cross-ecosystem boundaries, but also indirectly facilitate taxa whose life cycles are entirely within the second ecosystem. This compensatory response between cross-ecosystem and within-ecosystem taxa may have led to an attenuation of top-down effects across ecosystem boundaries. In addition, our results add to a growing consensus that species identity is an important determinant of community structure and ecosystem functioning. Thus, the composition of both terrestrial and aquatic food webs may affect the strength of cross-ecosystem interactions.

Experimental tests of the bacterial distance-decay relationship

Community similarity declines with increasing geographic distance if species tend to be locally adapted or if they are dispersal limited. The distance-decay of similarity has been shown for bacteria previously, but distinguishing between these competing mechanisms is difficult from observational surveys. I found little evidence of a relationship between geographic distance and similarity in community composition in an aquatic bacterial community. When bacterial colonization occurred into initially identical sterile microcosms across a woodland, a strong distance-decay relationship was observed after 28 days, implying that dispersal limitation created a strong pattern in these communities in the absence of environmental differences. This conclusion was not supported by the results of a reciprocal transplant experiment. When microcosms at the extremities of the study area were transplanted to the opposite end of the study area, the communities converged on the community composition at the site to which they were transplanted. This convergence did not depend on whether colonization into the microcosms was prevented, implying a minor role for dispersal limitation over these spatial and temporal scales. Additional manipulations of colonization rates were consistent with the hypothesis that dispersal limitation structured these communities over short time scales (a few days), but that dispersal limitation had a minor role over longer time scales (>7 days).

Evolution of prey in ecological time reduces the effect size of predators in experimental microcosms

Ecologists have long studied the effect of predators on prey population abundance while evolutionary biologists have measured prey trait evolution in response to predation. Ecological and evolutionary processes were generally thought to occur on different time scales, but recent evidence suggests that evolution may alter the ecological effects of predation over the course of ecological experiments. We used a protozoan and its mosquito-larvae predator, naturally found in the water-filled leaves of pitcher plants, to examine the effect of prey evolution on predator-prey interactions. In experiments conducted over 12 days (approximately 50 prey generations, but less than one predator generation), we measured a decrease in the effect of mosquito larvae predators on protozoa prey populations. In a separate set of experiments, we found that the presence of predators corresponded with evolution of smaller cell size and increased population growth rate. In ecological experiments, two situations commonly occur: strong selection pressure applied by the treatment itself and discrepancies in generation times of associate species. Our results suggest that in either situation, the resulting evolutionary patterns may lead to dramatic and important changes in ecological effect size.