Extraction of DNA by magnetic ionic liquids: tunable solvents for rapid and selective DNA analysis

Synthesis and characterization of low viscosity hexafluoroacetylacetonate-based hydrophobic magnetic ionic liquids

The properties of low viscosity, hydrophobic magnetic ionic liquids featuring transition and rare earth metal hexafluoroacetylacetonate chelated anions paired with the trihexyl(tetradecyl)phosphonium cation are studied.

Synthesis of magnetic polymeric ionic liquid nanocomposites by the Radziszewski reaction

The application of the Radziszewski reaction is proposed for the first time for the synthesis of magnetic polymeric ionic liquids. After their characterization, the sorption ability of the nanocomposites towards acidic compounds have been evaluated.

Sample Preparation for Bioanalytical and Pharmaceutical Analysis

Biological and pharmaceutical samples represent formidable challenges in sample preparation that hold important consequences for bioanalysis and genotoxic impurity quantification. This Feature will emphasize significant advances toward the development of rapid, sensitive, and selective sample preparation methods.

Faster dispersive liquid-liquid microextraction methods using magnetic ionic liquids as solvents

Three hydrophobic magnetic ionic liquids (MILs) containing the tetrachloromanganate(II) (MnCl4(2-)) anion, namely, aliquat tetrachloromanganate(II) ([Aliquat(+)]2[MnCl4(2-)]), methyltrioctylammonium [MnCl4(2-)] ([N1,8,8,8(+)]2[MnCl4(2-)]), and trihexyltetradecylphosphonium [MnCl4(2-)] ([P6,6,6,14(+)]2[MnCl4(2-)]) were employed as extraction solvents in DLLME coupled to high-performance liquid chromatography (HPLC) employing UV detection. The MILs were developed with the features of magnetic susceptibility to permit rapid retrieval of the extraction solvent, hydrophobicity to allow for phase separation from water, and mobile phase compatibility with reversed phase HPLC. Additionally, the MILs were customized to minimize hydrolysis of the anionic component in aqueous media as well as reduce absorbance when subjected to HPLC. The three MILs were applied for the extraction of pharmaceutical drugs, phenolics, insecticides, and polycyclic aromatic hydrocarbons. The disperser solvent type, disperser solvent volume, mass of MIL, extraction time, the pH of the sample solution, and salt concentration were studied in order to achieve optimal extraction efficiency for each MIL. The [P6,6,6,14(+)]2[MnCl4(2-)] MIL exhibited the best extraction efficiencies for most of the target analytes compared to the other MILs. Good linearity was obtained using this MIL with correlation coefficients (R) varying from 0.997 to 0.999. The limits of detection (LODs) of all analytes ranged from 0.25 to 1.00μgL(-1). The relative recovery was studied in lake water and river water. The relative recovery in lake water varied from 53.8% to 114.7% at a spiked concentration of 20μgL(-1) (5μgL(-1) for phenanthrene) and from 52.1% to 106.7% at 150μgL(-1) (37.5μgL(-1) for phenanthrene). In river water, the relative recovery varied from 44.6% to 110.7% at a spiked concentration of 20μgL(-1) (5μgL(-1) for phenanthrene) and 42.9% to 83.6% at 150μgL(-1) (37.5μgL(-1) for phenanthrene).

Extraction and Purification of DNA from Complex Biological Sample Matrices Using Solid-Phase Microextraction Coupled with Real-Time PCR

The determination of extremely small quantities of DNA from complex biological sample matrices represents a significant bottleneck in nucleic acid analysis. In this study, polymeric ionic liquid (PIL)-based solid-phase microextraction (SPME) was applied for the extraction and purification of DNA from crude bacterial cell lysate with subsequent quantification by real-time PCR (qPCR) analysis. Using an on-fiber ultraviolet initiated polymerization technique, eight different PIL sorbent coatings were generated and their DNA extraction performance evaluated using qPCR. The PIL sorbent coating featuring halide anions and carboxylic acid groups in the cationic portion exhibited superior DNA extraction capabilities when compared to the other studied PILs and a commercial polyacrylate SPME fiber. Electrostatic interactions as well as an ion-exchange mechanism were identified as the driving forces in DNA extraction by the PIL sorbents. The selectivity of the PIL sorbent coating for DNA was demonstrated in the presence of PCR inhibitors at high concentration, where a quantifiable amount of template DNA was extracted from aqueous samples containing CaCl2 and FeCl3. Furthermore, the PIL-based SPME method was successfully applied for the extraction of DNA from crude bacterial cell lysate spiked with 1 pg mL(-1) template DNA without requiring the use of organic solvents or centrifugation steps. Following PIL-based SPME of DNA from a dilute cell lysate, the qPCR amplification efficiency was determined to be 100.3%, demonstrating the feasibility of the developed method to extract high purity DNA from complex sample matrices.

Recent advances in exploiting ionic liquids for biomolecules: Solubility, stability and applications

The technological utility of biomolecules (e.g. proteins, enzymes and DNA) can be significantly enhanced by combining them with ionic liquids (ILs) - potentially attractive "green" and "designer" solvents - rather than using in conventional organic solvents or water. In recent years, ILs have been used as solvents, cosolvents, and reagents for biocatalysis, biotransformation, protein preservation and stabilization, DNA solubilization and stabilization, and other biomolecule-based applications. Using ILs can dramatically enhance the structural and chemical stability of proteins, DNA, and enzymes. This article reviews the recent technological developments of ILs in protein-, enzyme-, and DNA-based applications. We discuss the different routes to increase biomolecule stability and activity in ILs, and the design of biomolecule-friendly ILs that can dissolve biomolecules with minimum alteration to their structure. This information will be helpful to design IL-based processes in biotechnology and the biological sciences that can serve as novel and selective processes for enzymatic reactions, protein and DNA stability, and other biomolecule-based applications.

Magnetic ionic liquids as non-conventional extraction solvents for the determination of polycyclic aromatic hydrocarbons

This work describes the applicability of magnetic ionic liquids (MILs) in the analytical determination of a group of heavy polycyclic aromatic hydrocarbons. Three different MILs, namely, benzyltrioctylammonium bromotrichloroferrate (III) (MIL A), methoxybenzyltrioctylammonium bromotrichloroferrate (III) (MIL B), and 1,12-di(3-benzylbenzimidazolium) dodecane bis[(trifluoromethyl)sulfonyl)]imide bromotrichloroferrate (III) (MIL C), were designed to exhibit hydrophobic properties, and their performance examined in a microextraction method for hydrophobic analytes. The magnet-assisted approach with these MILs was performed in combination with high performance liquid chromatography and fluorescence detection. The study of the extraction performance showed that MIL A was the most suitable solvent for the extraction of polycyclic aromatic hydrocarbons and under optimum conditions the fast extraction step required ∼20 μL of MIL A for 10 mL of aqueous sample, 24 mmol L(-1) NaOH, high ionic strength content of NaCl (25% (w/v)), 500 μL of acetone as dispersive solvent, and 5 min of vortex. The desorption step required the aid of an external magnetic field with a strong NdFeB magnet (the separation requires few seconds), two back-extraction steps for polycyclic aromatic hydrocarbons retained in the MIL droplet with n-hexane, evaporation and reconstitution with acetonitrile. The overall method presented limits of detection down to 5 ng L(-1), relative recoveries ranging from 91.5 to 119%, and inter-day reproducibility values (expressed as relative standard derivation) lower than 16.4% for a spiked level of 0.4 μg L(-1) (n = 9). The method was also applied for the analysis of real samples, including tap water, wastewater, and tea infusion.

Sequence-Specific Electrical Purification of Nucleic Acids with Nanoporous Gold Electrodes

Nucleic-acid-based biosensors have enabled rapid and sensitive detection of pathogenic targets; however, these devices often require purified nucleic acids for analysis since the constituents of complex biological fluids adversely affect sensor performance. This purification step is typically performed outside the device, thereby increasing sample-to-answer time and introducing contaminants. We report a novel approach using a multifunctional matrix, nanoporous gold (np-Au), which enables both detection of specific target sequences in a complex biological sample and their subsequent purification. The np-Au electrodes modified with 26-mer DNA probes (via thiol-gold chemistry) enabled sensitive detection and capture of complementary DNA targets in the presence of complex media (fetal bovine serum) and other interfering DNA fragments in the range of 50-1500 base pairs. Upon capture, the noncomplementary DNA fragments and serum constituents of varying sizes were washed away. Finally, the surface-bound DNA-DNA hybrids were released by electrochemically cleaving the thiol-gold linkage, and the hybrids were iontophoretically eluted from the nanoporous matrix. The optical and electrophoretic characterization of the analytes before and after the detection-purification process revealed that low target DNA concentrations (80 pg/μL) can be successfully detected in complex biological fluids and subsequently released to yield pure hybrids free of polydisperse digested DNA fragments and serum biomolecules. Taken together, this multifunctional platform is expected to enable seamless integration of detection and purification of nucleic acid biomarkers of pathogens and diseases in miniaturized diagnostic devices.

Long-Range Ordering of Ionic Liquid Fluid Films

We report the transformation of ionic liquid films from isotropic bulk to a fluid-ordered state over micrometer length scales. Data from infrared and nonlinear spectroscopy measurements show clear transitions that, for varying ionic liquids, occur over time frames of 10 min to 2 h. These maturation times depend linearly on the chosen ionic liquids' bulk viscosities. Interestingly, the ionic liquids do not form solids upon ordering but do exhibit strong preferential alignments of molecules that persist throughout the fluid films' thicknesses. Our measurements characterize this ordering process and show that it is largely insensitive to substrate surface chemistry or small amounts of absorbed water. Additional experiments show the transition is observed across several of the most common ionic liquid cations and that the process is completely reversible. The driving force for this organization is attributed to electrostatic and steric forces combined with a slow shearing of the viscous ionic liquid. These interactions work together to slowly bring the molecules within the film to a preferred, global orientation. The physical length and time scales of this transformation are unexpected and intriguing and invite additional studies to develop an understanding and control of ionic liquid materials' behavior, particularly near surfaces, to benefit their uses in lubrication, capacitive energy storage, and heterogeneous catalysis.

Magnetic ionic liquid in stirring-assisted drop-breakup microextraction: Proof-of-concept extraction of phenolic endocrine disrupters and acidic pharmaceuticals

The use of magnetic ionic liquids (MILs) is in constant growth due to their switchable properties in the presence of an external magnetic field along with the outstanding properties of ionic liquids. In this study, a novel stirring-assisted drop-breakup microextraction (SADBME) approach is put forward, based on the synthesis and utilization of methyltrioctylammonium tetrachloroferrate (N8 8,8,1[FeCl4]), as a MIL. The proposed procedure complies with the principles of the green chemistry, since it uses low volumes of easily synthesized ILs-based magnetic extracting phases avoiding the use of toxic solvents. To demonstrate its applicability, the proposed microextraction procedure is studied in conjunction with HPLC for the determination of selected phenols and acidic pharmaceuticals in aqueous matrices, taking into account the main experimental variables involved. The results obtained are accurate and highly reproducible, thus making it a good alternative approach for routine analysis of phenols and acidic pharmaceuticals. The low-cost approach is straightforward, environmentally safe and exhibits high enrichment factors and absolute extraction percentages and satisfactory recoveries. To the best of our knowledge, this is the first time that a MIL is used for analytical purposes in a practical, efficient and environmentally friendly drop-breakup microextraction approach for small molecules.

Synthesis and characterization of the physicochemical and magnetic properties for perfluoroalkyl ester and Fe(iii) carboxylate-based hydrophobic magnetic ionic liquids

The hydrophobic and magnetic properties of magnetic ionic liquids can be controlled using cation functionalization or anion modification.

Preservation of DNA in nuclease-rich samples using magnetic ionic liquids

Magnetic ionic liquids (MIL) can serve as DNA preservation media in nuclease-rich environments. Plasmid DNA exhibited structural stability for up to 1 week in MILs.

High-performance of deep eutectic solvent based aqueous bi-phasic systems for the extraction of DNA

DES-based ABSs were initially applied to extraction and back extraction of DNA. The remarkable performance on selective separation of DNA and protein was evaluated. The binding characteristics and mechanism of extraction process were investigated.

Active biopolymers in green non-conventional media: a sustainable tool for developing clean chemical processes

By understanding structure–function relationships of active biopolymers (e.g. enzymes and nucleic acids) in green non-conventional media, sustainable chemical processes may be developed.

Ionic liquid poly(3-n-dodecyl-1-vinylimidazolium) bromide as an adsorbent for the sorption of hemoglobin

A novel polymeric ionic liquid, poly(1-vinylimidazolium-3-n-dodecyl) bromide, exhibits selective adsorption of hemoglobin from human whole blood.

1-Ethyl-2,3-dimethylimidazolium paramagnetic ionic liquids with 3D magnetic ordering in its solid state: synthesis, structure and magneto-structural correlations

We present two novel paramagnetic ionic liquids, Edimim FeX₄ (X = Cl and Br), which display a three-dimensional magnetic ordering below 10 K. Exhaustive and systematic studies of the magneto-structural correlations have been performed.

Magnetic ionic liquids as PCR-compatible solvents for DNA extraction from biological samples

A novel strategy for the rapid detection of bacterial plasmid DNA preconcentrated by hydrophobic magnetic ionic liquids (MILs) is described.