101
|
Carlson S, Brünig FN, Loche P, Bonthuis DJ, Netz RR. Exploring the Absorption Spectrum of Simulated Water from MHz to Infrared. J Phys Chem A 2020; 124:5599-5605. [DOI: 10.1021/acs.jpca.0c04063] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Shane Carlson
- Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
| | - Florian N. Brünig
- Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
| | - Philip Loche
- Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
| | - Douwe Jan Bonthuis
- Institute of Theoretical and Computational Physics, Graz University of Technology, 8010 Graz, Austria
| | - Roland R. Netz
- Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
| |
Collapse
|
102
|
Wang L, Ceriotti M, Markland TE. Quantum kinetic energy and isotope fractionation in aqueous ionic solutions. Phys Chem Chem Phys 2020; 22:10490-10499. [PMID: 31942581 DOI: 10.1039/c9cp06483d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
At room temperature, the quantum contribution to the kinetic energy of a water molecule exceeds the classical contribution by an order of magnitude. The quantum kinetic energy (QKE) of a water molecule is modulated by its local chemical environment and leads to uneven partitioning of isotopes between different phases in thermal equilibrium, which would not occur if the nuclei behaved classically. In this work, we use ab initio path integral simulations to show that QKEs of the water molecules and the equilibrium isotope fractionation ratios of the oxygen and hydrogen isotopes are sensitive probes of the hydrogen bonding structures in aqueous ionic solutions. In particular, we demonstrate how the QKE of water molecules in path integral simulations can be decomposed into translational, rotational and vibrational degrees of freedom, and use them to determine the impact of solvation on different molecular motions. By analyzing the QKEs and isotope fractionation ratios, we show how the addition of the Na+, Cl- and HPO42- ions perturbs the competition between quantum effects in liquid water and impacts their local solvation structures.
Collapse
Affiliation(s)
- Lu Wang
- Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, USA.
| | | | | |
Collapse
|
103
|
Berta D, Ferenc D, Bakó I, Madarász Á. Nuclear Quantum Effects from the Analysis of Smoothed Trajectories: Pilot Study for Water. J Chem Theory Comput 2020; 16:3316-3334. [PMID: 32268067 PMCID: PMC7304866 DOI: 10.1021/acs.jctc.9b00703] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
![]()
Nuclear quantum effects
have significant contributions to thermodynamic
quantities and structural properties; furthermore, very expensive
methods are necessary for their accurate computation. In most calculations,
these effects, for instance, zero-point energies, are simply neglected
or only taken into account within the quantum harmonic oscillator
approximation. Herein, we present a new method, Generalized Smoothed
Trajectory Analysis, to determine nuclear quantum effects from molecular
dynamics simulations. The broad applicability is demonstrated with
the examples of a harmonic oscillator and different states of water.
Ab initio molecular dynamics simulations have been performed for ideal
gas up to the temperature of 5000 K. Classical molecular dynamics
have been carried out for hexagonal ice, liquid water, and vapor at
atmospheric pressure. With respect to the experimental heat capacity,
our method outperforms previous calculations in the literature in
a wide temperature range at lower computational cost than other alternatives.
Dynamic and structural nuclear quantum effects of water are also discussed.
Collapse
Affiliation(s)
- Dénes Berta
- Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.,Department of Chemistry, Kings College London, 7 Trinity Street, SE1 1DB London, United Kingdom
| | - Dávid Ferenc
- Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary
| | - Imre Bakó
- Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary
| | - Ádám Madarász
- Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary
| |
Collapse
|
104
|
Self-interaction error overbinds water clusters but cancels in structural energy differences. Proc Natl Acad Sci U S A 2020; 117:11283-11288. [PMID: 32393631 DOI: 10.1073/pnas.1921258117] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
We gauge the importance of self-interaction errors in density functional approximations (DFAs) for the case of water clusters. To this end, we used the Fermi-Löwdin orbital self-interaction correction method (FLOSIC) to calculate the binding energy of clusters of up to eight water molecules. Three representative DFAs of the local, generalized gradient, and metageneralized gradient families [i.e., local density approximation (LDA), Perdew-Burke-Ernzerhof (PBE), and strongly constrained and appropriately normed (SCAN)] were used. We find that the overbinding of the water clusters in these approximations is not a density-driven error. We show that, while removing self-interaction error does not alter the energetic ordering of the different water isomers with respect to the uncorrected DFAs, the resulting binding energies are corrected toward accurate reference values from higher-level calculations. In particular, self-interaction-corrected SCAN not only retains the correct energetic ordering for water hexamers but also reduces the mean error in the hexamer binding energies to less than 14 meV/[Formula: see text] from about 42 meV/[Formula: see text] for SCAN. By decomposing the total binding energy into many-body components, we find that large errors in the two-body interaction in SCAN are significantly reduced by self-interaction corrections. Higher-order many-body errors are small in both SCAN and self-interaction-corrected SCAN. These results indicate that orbital-by-orbital removal of self-interaction combined with a proper DFA can lead to improved descriptions of water complexes.
Collapse
|
105
|
Tang F, Ohto T, Sun S, Rouxel JR, Imoto S, Backus EHG, Mukamel S, Bonn M, Nagata Y. Molecular Structure and Modeling of Water-Air and Ice-Air Interfaces Monitored by Sum-Frequency Generation. Chem Rev 2020; 120:3633-3667. [PMID: 32141737 PMCID: PMC7181271 DOI: 10.1021/acs.chemrev.9b00512] [Citation(s) in RCA: 83] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Indexed: 12/26/2022]
Abstract
From a glass of water to glaciers in Antarctica, water-air and ice-air interfaces are abundant on Earth. Molecular-level structure and dynamics at these interfaces are key for understanding many chemical/physical/atmospheric processes including the slipperiness of ice surfaces, the surface tension of water, and evaporation/sublimation of water. Sum-frequency generation (SFG) spectroscopy is a powerful tool to probe the molecular-level structure of these interfaces because SFG can specifically probe the topmost interfacial water molecules separately from the bulk and is sensitive to molecular conformation. Nevertheless, experimental SFG has several limitations. For example, SFG cannot provide information on the depth of the interface and how the orientation of the molecules varies with distance from the surface. By combining the SFG spectroscopy with simulation techniques, one can directly compare the experimental data with the simulated SFG spectra, allowing us to unveil the molecular-level structure of water-air and ice-air interfaces. Here, we present an overview of the different simulation protocols available for SFG spectra calculations. We systematically compare the SFG spectra computed with different approaches, revealing the advantages and disadvantages of the different methods. Furthermore, we account for the findings through combined SFG experiments and simulations and provide future challenges for SFG experiments and simulations at different aqueous interfaces.
Collapse
Affiliation(s)
- Fujie Tang
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physics, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Tatsuhiko Ohto
- Graduate
School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Shumei Sun
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090 Vienna, Austria
| | - Jérémy R. Rouxel
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Sho Imoto
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
| | - Ellen H. G. Backus
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090 Vienna, Austria
| | - Shaul Mukamel
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Mischa Bonn
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
| | - Yuki Nagata
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physics, State Key Laboratory of Surface Physics and Key Laboratory
of Micro- and Nano-Photonic Structures (MOE), Fudan University, Shanghai 200433, China
| |
Collapse
|
106
|
Ishiyama T. Existence of weakly interacting OH bond at air/water interface. J Chem Phys 2020; 152:134703. [DOI: 10.1063/1.5144308] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Affiliation(s)
- Tatsuya Ishiyama
- Department of Applied Chemistry, Graduate School of Science and Engineering, University of Toyama, Toyama 930-8555, Japan
| |
Collapse
|
107
|
Kapil V, Wilkins DM, Lan J, Ceriotti M. Inexpensive modeling of quantum dynamics using path integral generalized Langevin equation thermostats. J Chem Phys 2020; 152:124104. [PMID: 32241150 DOI: 10.1063/1.5141950] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
The properties of molecules and materials containing light nuclei are affected by their quantum mechanical nature. Accurate modeling of these quantum nuclear effects requires computationally demanding path integral techniques. Considerable success has been achieved in reducing the cost of such simulations by using generalized Langevin dynamics to induce frequency-dependent fluctuations. Path integral generalized Langevin equation methods, however, have this far been limited to the study of static, thermodynamic properties due to the large perturbation to the system's dynamics induced by the aggressive thermostatting. Here, we introduce a post-processing scheme, based on analytical estimates of the dynamical perturbation induced by the generalized Langevin dynamics, which makes it possible to recover meaningful time correlation properties from a thermostatted trajectory. We show that this approach yields spectroscopic observables for model and realistic systems that have an accuracy comparable to much more demanding approximate quantum dynamics techniques based on full path integral simulations.
Collapse
Affiliation(s)
- Venkat Kapil
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, Lausanne 1015, Switzerland
| | - David M Wilkins
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, Lausanne 1015, Switzerland
| | - Jinggang Lan
- Department of Chemistry, University of Zürich, Zürich, Switzerland
| | - Michele Ceriotti
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, Lausanne 1015, Switzerland
| |
Collapse
|
108
|
Sommers GM, Calegari Andrade MF, Zhang L, Wang H, Car R. Raman spectrum and polarizability of liquid water from deep neural networks. Phys Chem Chem Phys 2020; 22:10592-10602. [DOI: 10.1039/d0cp01893g] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Using deep neural networks to model the polarizability and potential energy surfaces, we compute the Raman spectrum of liquid water at several temperatures with ab initio molecular dynamics accuracy.
Collapse
Affiliation(s)
| | | | - Linfeng Zhang
- Program in Applied and Computational Mathematics
- Princeton University
- Princeton
- USA
| | - Han Wang
- Laboratory of Computational Physics
- Institute of Applied Physics and Computational Mathematics
- Beijing 100088
- P. R. China
| | - Roberto Car
- Department of Physics
- Princeton University
- Princeton
- USA
- Department of Chemistry
| |
Collapse
|
109
|
Aydin F, Zhan C, Ritt C, Epsztein R, Elimelech M, Schwegler E, Pham TA. Similarities and differences between potassium and ammonium ions in liquid water: a first-principles study. Phys Chem Chem Phys 2020; 22:2540-2548. [DOI: 10.1039/c9cp06163k] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Understanding ion solvation in liquid water is critical in optimizing materials for a wide variety of emerging technologies, including water desalination and purification.
Collapse
Affiliation(s)
- Fikret Aydin
- Lawrence Livermore National Laboratory
- Livermore
- USA
| | - Cheng Zhan
- Lawrence Livermore National Laboratory
- Livermore
- USA
| | - Cody Ritt
- Department of Chemical and Environmental Engineering
- Yale University
- New Haven
- USA
| | - Razi Epsztein
- Department of Chemical and Environmental Engineering
- Yale University
- New Haven
- USA
- Faculty of Civil and Environmental Engineering
| | - Menachem Elimelech
- Department of Chemical and Environmental Engineering
- Yale University
- New Haven
- USA
| | | | | |
Collapse
|
110
|
Duignan TT, Schenter GK, Fulton JL, Huthwelker T, Balasubramanian M, Galib M, Baer MD, Wilhelm J, Hutter J, Del Ben M, Zhao XS, Mundy CJ. Quantifying the hydration structure of sodium and potassium ions: taking additional steps on Jacob's Ladder. Phys Chem Chem Phys 2020; 22:10641-10652. [DOI: 10.1039/c9cp06161d] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The ability to reproduce the experimental structure of water around the sodium and potassium ions is a key test of the quality of interaction potentials due to the central importance of these ions in a wide range of important phenomena.
Collapse
Affiliation(s)
- Timothy T. Duignan
- Physical Science Division
- Pacific Northwest National Laboratory
- Richland
- USA
- School of Chemical Engineering
| | | | - John L. Fulton
- Physical Science Division
- Pacific Northwest National Laboratory
- Richland
- USA
| | - Thomas Huthwelker
- Swiss Light Source
- Paul Scherrer Institut (PSI)
- 5232 Villigen
- Switzerland
| | | | - Mirza Galib
- Physical Science Division
- Pacific Northwest National Laboratory
- Richland
- USA
| | - Marcel D. Baer
- Physical Science Division
- Pacific Northwest National Laboratory
- Richland
- USA
| | - Jan Wilhelm
- Department of Chemistry
- University of Zurich
- CH-8057 Zürich
- Switzerland
- Institute of Theoretical Physics
| | - Jürg Hutter
- Department of Chemistry
- University of Zurich
- CH-8057 Zürich
- Switzerland
| | - Mauro Del Ben
- Computational Research Division
- Lawrence Berkeley National Laboratory
- Berkeley
- USA
| | - X. S. Zhao
- School of Chemical Engineering
- The University of Queensland
- Brisbane 4072
- Australia
| | - Christopher J. Mundy
- Physical Science Division
- Pacific Northwest National Laboratory
- Richland
- USA
- Department of Chemical Engineering
| |
Collapse
|
111
|
Zhong K, Yu CC, Dodia M, Bonn M, Nagata Y, Ohto T. Vibrational mode frequency correction of liquid water in density functional theory molecular dynamics simulations with van der Waals correction. Phys Chem Chem Phys 2020; 22:12785-12793. [DOI: 10.1039/c9cp06335h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
We develop a frequency correction scheme for the stretch and bending modes of liquid water, which substantially improves the prediction of the vibrational spectra.
Collapse
Affiliation(s)
- Kai Zhong
- Hefei National Laboratory for Physical Sciences at the Microscale
- Collaborative Innovation Center of Chemistry for Energy Materials
- CAS Center for Excellence in Nanoscience
- School of Chemistry and Materials Science
- University of Science and Technology of China
| | - Chun-Chieh Yu
- Max Planck Institute for Polymer Research
- Ackermannweg 10
- 55128 Mainz
- Germany
| | - Mayank Dodia
- Max Planck Institute for Polymer Research
- Ackermannweg 10
- 55128 Mainz
- Germany
| | - Mischa Bonn
- Max Planck Institute for Polymer Research
- Ackermannweg 10
- 55128 Mainz
- Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research
- Ackermannweg 10
- 55128 Mainz
- Germany
| | - Tatsuhiko Ohto
- Graduate School of Engineering Science
- Osaka University
- Osaka 560-8531
- Japan
| |
Collapse
|
112
|
Panuszko A, Bruździak P, Śmiechowski M, Stasiulewicz M, Stefaniak J, Stangret J. DMSO hydration redefined: Unraveling the hydrophobic hydration of solutes with a mixed hydrophilic–hydrophobic characteristic. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111661] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
113
|
LaCount MD, Gygi F. Ensemble first-principles molecular dynamics simulations of water using the SCAN meta-GGA density functional. J Chem Phys 2019; 151:164101. [DOI: 10.1063/1.5124957] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Affiliation(s)
- Michael D. LaCount
- Department of Computer Science, University of California, Davis, California 95616, USA
| | - François Gygi
- Department of Computer Science, University of California, Davis, California 95616, USA
| |
Collapse
|
114
|
Cassone G, Sponer J, Trusso S, Saija F. Ab initio spectroscopy of water under electric fields. Phys Chem Chem Phys 2019; 21:21205-21212. [PMID: 31368466 DOI: 10.1039/c9cp03101d] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Whereas a broad range of literature exists on the spectroscopy of water in disparate conditions, infrared (IR) and Raman spectra of water subjected to electric fields have never extensively been investigated so far. Based on ab initio molecular dynamics simulations, here we present IR and Raman spectra of bulk liquid water under the effect of static electric fields. A contraction of the entire frequency range is recorded upon increasing the field intensity both in the IR and in the Raman spectra. Whilst the OH stretching band is progressively shifted toward lower frequencies - indicating a field-induced strengthening of the H-bond network - all the other bands are up-shifted by the field. Furthermore, an evident modification of the librational mode band appears in all the spectra. Finally, the order-maker action of the field emerges also from the increase of the water orientational tetrahedral order. Upon field exposure, the water structure becomes more "ice like".
Collapse
Affiliation(s)
- Giuseppe Cassone
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 61265 Brno, Czech Republic.
| | | | | | | |
Collapse
|
115
|
Ohto T, Dodia M, Xu J, Imoto S, Tang F, Zysk F, Kühne TD, Shigeta Y, Bonn M, Wu X, Nagata Y. Accessing the Accuracy of Density Functional Theory through Structure and Dynamics of the Water-Air Interface. J Phys Chem Lett 2019; 10:4914-4919. [PMID: 31393136 PMCID: PMC6748669 DOI: 10.1021/acs.jpclett.9b01983] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 08/08/2019] [Indexed: 05/31/2023]
Abstract
Density functional theory-based molecular dynamics simulations are increasingly being used for simulating aqueous interfaces. Nonetheless, the choice of the appropriate density functional, critically affecting the outcome of the simulation, has remained arbitrary. Here, we assess the performance of various exchange-correlation (XC) functionals, based on the metrics relevant to sum-frequency generation spectroscopy. The structure and dynamics of water at the water-air interface are governed by heterogeneous intermolecular interactions, thereby providing a critical benchmark for XC functionals. We find that the XC functionals constrained by exact functional conditions (revPBE and revPBE0) with the dispersion correction show excellent performance. The poor performance of the empirically optimized density functional (M06-L) indicates the importance of satisfying the exact functional condition. Understanding the performance of different XC functionals can aid in resolving the controversial interpretation of the interfacial water structure and direct the design of novel, improved XC functionals better suited to describing the heterogeneous interactions in condensed phases.
Collapse
Affiliation(s)
- Tatsuhiko Ohto
- Graduate
School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Mayank Dodia
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Jianhang Xu
- Department
of Physics, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Sho Imoto
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Fujie Tang
- Department
of Physics, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Frederik Zysk
- Dynamics
of Condensed Matter and Center for Sustainable Systems Design, Chair
of Theoretical Chemistry, University of
Paderborn, Warburger Strasse 100, 33098 Paderborn, Germany
| | - Thomas D. Kühne
- Dynamics
of Condensed Matter and Center for Sustainable Systems Design, Chair
of Theoretical Chemistry, University of
Paderborn, Warburger Strasse 100, 33098 Paderborn, Germany
| | - Yasuteru Shigeta
- Graduate
School of Pure and Applied Sciences, University
of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki 305-8571, Japan
- Center
for Computational Sciences, University of
Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8577, Japan
| | - Mischa Bonn
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Xifan Wu
- Department
of Physics, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Yuki Nagata
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| |
Collapse
|
116
|
Sharma B, Chandra A. Conformation-Induced Dynamical Heterogeneity of Water in the Solvation Shell of Zwitterionic γ-Aminobutyric Acid. J Phys Chem B 2019; 123:7937-7946. [DOI: 10.1021/acs.jpcb.9b01771] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Bikramjit Sharma
- Department of Chemistry, Indian Institute of Technology, Kanpur, Kanpur 208016, India
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology, Kanpur, Kanpur 208016, India
| |
Collapse
|
117
|
Riera M, Lambros E, Nguyen TT, Götz AW, Paesani F. Low-order many-body interactions determine the local structure of liquid water. Chem Sci 2019; 10:8211-8218. [PMID: 32133122 PMCID: PMC6927411 DOI: 10.1039/c9sc03291f] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Accepted: 07/21/2019] [Indexed: 12/30/2022] Open
Abstract
Two-body and three-body energies, modulated by higher-body terms and nuclear quantum effects, determine the structure of liquid water and require sub-chemical accuracy that is achieved by the MB-pol model but not by existing DFT functionals.
Despite its apparent simplicity, water displays unique behavior across the phase diagram which is strictly related to the ability of the water molecules to form dense, yet dynamic, hydrogen-bond networks that continually fluctuate in time and space. The competition between different local hydrogen-bonding environments has been hypothesized as a possible origin of the anomalous properties of liquid water. Through a systematic application of the many-body expansion of the total energy, we demonstrate that the local structure of liquid water at room temperature is determined by a delicate balance between two-body and three-body energies, which is further modulated by higher-order many-body effects. Besides providing fundamental insights into the structure of liquid water, this analysis also emphasizes that a correct representation of two-body and three-body energies requires sub-chemical accuracy that is nowadays only achieved by many-body models rigorously derived from the many-body expansion of the total energy, which thus hold great promise for shedding light on the molecular origin of the anomalous behavior of liquid water.
Collapse
Affiliation(s)
- Marc Riera
- Department of Chemistry and Biochemistry , University of California , San Diego , La Jolla , California 92093 , USA
| | - Eleftherios Lambros
- Department of Chemistry and Biochemistry , University of California , San Diego , La Jolla , California 92093 , USA
| | - Thuong T Nguyen
- Department of Chemistry and Biochemistry , University of California , San Diego , La Jolla , California 92093 , USA
| | - Andreas W Götz
- San Diego Supercomputer Center , University of California , San Diego , La Jolla , California 92093 , USA
| | - Francesco Paesani
- Department of Chemistry and Biochemistry , University of California , San Diego , La Jolla , California 92093 , USA.,San Diego Supercomputer Center , University of California , San Diego , La Jolla , California 92093 , USA.,Materials Science and Engineering , University of California , San Diego , La Jolla , California 92093 , USA .
| |
Collapse
|
118
|
Chowdhury SN, Huo P. State dependent ring polymer molecular dynamics for investigating excited nonadiabatic dynamics. J Chem Phys 2019; 150:244102. [DOI: 10.1063/1.5096276] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sutirtha N. Chowdhury
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, USA
| | - Pengfei Huo
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, USA
| |
Collapse
|
119
|
Abstract
Hydration-shell vibrational spectroscopy provides an experimental window into solute-induced water structure changes that mediate aqueous folding, binding, and self-assembly. Decomposition of measured Raman and infrared (IR) spectra of aqueous solutions using multivariate curve resolution (MCR) and related methods may be used to obtain solute-correlated spectra revealing solute-induced perturbations of water structure, such as changes in water hydrogen-bond strength, tetrahedral order, and the presence of dangling (non-hydrogen-bonded) OH groups. More generally, vibrational-MCR may be applied to both aqueous and nonaqueous solutions, including multicomponent mixtures, to quantify solvent-mediated interactions between oily, polar, and ionic solutes, in both dilute and crowded fluids. Combining vibrational-MCR with emerging theoretical modeling strategies promises synergetic advances in the predictive understanding of multiscale self-assembly processes of both biological and technological interest.
Collapse
Affiliation(s)
- Dor Ben-Amotz
- Department of Chemistry , Purdue University , West Lafayette , Indiana 47907 , United States
| |
Collapse
|
120
|
Kananenka AA, Hestand NJ, Skinner JL. OH-Stretch Raman Multivariate Curve Resolution Spectroscopy of HOD/H2O Mixtures. J Phys Chem B 2019; 123:5139-5146. [DOI: 10.1021/acs.jpcb.9b02686] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alexei A. Kananenka
- Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, United States
| | - Nicholas J. Hestand
- Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, United States
| | - J. L. Skinner
- Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, United States
| |
Collapse
|
121
|
Boyer MA, Marsalek O, Heindel JP, Markland TE, McCoy AB, Xantheas SS. Beyond Badger's Rule: The Origins and Generality of the Structure-Spectra Relationship of Aqueous Hydrogen Bonds. J Phys Chem Lett 2019; 10:918-924. [PMID: 30735052 DOI: 10.1021/acs.jpclett.8b03790] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The structure of hydrogen bonded networks is intimately intertwined with their dynamics. Despite the incredibly wide range of hydrogen bond strengths encountered in water clusters, ion-water clusters, and liquid water, we demonstrate that the previously reported correlation between the change in the equilibrium bond length of the hydrogen bonded OH covalent bond and the corresponding shift in its harmonic frequency in water clusters is much more broadly applicable. Surprisingly, this correlation describes the ratios for both the equilibrium OH bond length/harmonic frequency and the vibrationally averaged bond length/anharmonic frequency in water, hydronium water, and halide water clusters. Consideration of harmonic and anaharmonic data leads to a correlation of -19 ± 1 cm-1/0.001 Å. The fundamental nature of this correlation is further confirmed through the analysis of ab initio Molecular Dynamics (AIMD) trajectories for liquid water. We demonstrate that this simple correlation for both harmonic and anharmonic systems can be modeled by the response of an OH bond to an external field. Treating the OH bond as a Morse oscillator, we develop analytic expressions, which relate the ratio of the shift in the vibrational frequency of the hydrogen-bonded OH bond to the shift in OH bond length, to parameters in the Morse potential and the ratio of the first and second derivatives of the field-dependent projection of the dipole moment of water onto the hydrogen-bonded OH bond. Based on our analysis, we develop a protocol for reconstructing the AIMD spectra of liquid water from the sampled distribution of the OH bond lengths. Our findings elucidate the origins of the relationship between the molecular structure of the fleeting hydrogen-bonded network and the ensuing dynamics, which can be probed by vibrational spectroscopy.
Collapse
Affiliation(s)
- Mark A Boyer
- Department of Chemistry , University of Washington , Seattle , Washington 98195 , United States
| | - Ondrej Marsalek
- Charles University , Faculty of Mathematics and Physics , Ke Karlovu 3 , 121 16 Prague 2, Czech Republic
| | - Joseph P Heindel
- Department of Chemistry , University of Washington , Seattle , Washington 98195 , United States
| | - Thomas E Markland
- Department of Chemistry , Stanford University , Stanford , California 94305 , United States
| | - Anne B McCoy
- Department of Chemistry , University of Washington , Seattle , Washington 98195 , United States
| | - Sotiris S Xantheas
- Department of Chemistry , University of Washington , Seattle , Washington 98195 , United States
- Advanced Computing, Mathematics and Data Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard , P.O. Box 999, MS K1-83, Richland , Washington 99352 , United States
| |
Collapse
|
122
|
Mandal A, Sandoval C. JS, Shakib FA, Huo P. Quasi-Diabatic Propagation Scheme for Direct Simulation of Proton-Coupled Electron Transfer Reaction. J Phys Chem A 2019; 123:2470-2482. [DOI: 10.1021/acs.jpca.9b00077] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Arkajit Mandal
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, United States
| | - Juan S. Sandoval C.
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, United States
| | - Farnaz A. Shakib
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, United States
| | - Pengfei Huo
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, United States
| |
Collapse
|
123
|
Hestand NJ, Strong SE, Shi L, Skinner JL. Mid-IR spectroscopy of supercritical water: From dilute gas to dense fluid. J Chem Phys 2019; 150:054505. [DOI: 10.1063/1.5079232] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Nicholas J. Hestand
- Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA
| | - Steven E. Strong
- Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA
| | - Liang Shi
- School of Natural Sciences, University of California, Merced, California 95344, USA
| | - J. L. Skinner
- Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA
| |
Collapse
|
124
|
Dammak H, Brieuc F, Geneste G, Torrent M, Hayoun M. Isotope effect on hydrogen bond symmetrization in hydrogen and deuterium fluoride crystals by molecular dynamics simulation. Phys Chem Chem Phys 2019; 21:3211-3217. [PMID: 30681084 DOI: 10.1039/c8cp06949b] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The isotope effect on the collective proton/deuteron transfer in hydrogen and deuterium fluoride crystals has been investigated at 100 K by ab initio quantum-thermal-bath path-integral molecular dynamics (QTB-PIMD) simulation. The deuterons within a planar zigzag chain of the orthorhombic structure simultaneously flip between covalent and hydrogen bonds due to the barrier crossing through tunnelling. The height of the corresponding static barrier normalized for one deuteron is 29.2 meV. In the HF crystal, all the protons are located at the center of the heavy-atom distance. This evidences the symmetrization of the H-bonds, and indicates that the proton zero-point energy is above the barrier top. The decrease of the heavy-atom distance due to quantum fluctuations in both HF and DF crystals corresponds to a large decrease and an increase of the hydrogen and covalent bond lengths, respectively. Upon deuteration, the increase of the heavy-atom distance (Ubbelohde effect) is in agreement with experimental data.
Collapse
Affiliation(s)
- Hichem Dammak
- Laboratoire Structures Propriétés et Modélisation des Solides, CentraleSupélec, CNRS, Université Paris-Saclay, F 91190 Gif-sur-Yvette, France.
| | | | | | | | | |
Collapse
|
125
|
Ikeda T. First principles isothermal-isobaric centroid molecular dynamics simulation of high pressure ices. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.01.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
126
|
Cheng B, Engel EA, Behler J, Dellago C, Ceriotti M. Ab initio thermodynamics of liquid and solid water. Proc Natl Acad Sci U S A 2019; 116:1110-1115. [PMID: 30610171 PMCID: PMC6347673 DOI: 10.1073/pnas.1815117116] [Citation(s) in RCA: 152] [Impact Index Per Article: 30.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Thermodynamic properties of liquid water as well as hexagonal (Ih) and cubic (Ic) ice are predicted based on density functional theory at the hybrid-functional level, rigorously taking into account quantum nuclear motion, anharmonic fluctuations, and proton disorder. This is made possible by combining advanced free-energy methods and state-of-the-art machine-learning techniques. The ab initio description leads to structural properties in excellent agreement with experiments and reliable estimates of the melting points of light and heavy water. We observe that nuclear-quantum effects contribute a crucial [Formula: see text] to the stability of ice Ih, making it more stable than ice Ic. Our computational approach is general and transferable, providing a comprehensive framework for quantitative predictions of ab initio thermodynamic properties using machine-learning potentials as an intermediate step.
Collapse
Affiliation(s)
- Bingqing Cheng
- Laboratory of Computational Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland;
| | - Edgar A Engel
- Laboratory of Computational Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Jörg Behler
- Universität Göttingen, Institut für Physikalische Chemie, Theoretische Chemie, 37077 Göttingen, Germany
- International Center for Advanced Studies of Energy Conversion, Universität Göttingen, 37073 Göttingen, Germany
| | | | - Michele Ceriotti
- Laboratory of Computational Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| |
Collapse
|
127
|
Ohto T, Dodia M, Imoto S, Nagata Y. Structure and Dynamics of Water at the Water–Air Interface Using First-Principles Molecular Dynamics Simulations within Generalized Gradient Approximation. J Chem Theory Comput 2018; 15:595-602. [DOI: 10.1021/acs.jctc.8b00567] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tatsuhiko Ohto
- Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Mayank Dodia
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Sho Imoto
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| |
Collapse
|
128
|
Hellström M, Ceriotti M, Behler J. Nuclear Quantum Effects in Sodium Hydroxide Solutions from Neural Network Molecular Dynamics Simulations. J Phys Chem B 2018; 122:10158-10171. [DOI: 10.1021/acs.jpcb.8b06433] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Matti Hellström
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany
- Universität Göttingen, Institut für Physikalische Chemie, Theoretische Chemie, Tammannstr. 6, 37077 Göttingen, Germany
| | - Michele Ceriotti
- Laboratory of Computational Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Jörg Behler
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany
- Universität Göttingen, Institut für Physikalische Chemie, Theoretische Chemie, Tammannstr. 6, 37077 Göttingen, Germany
| |
Collapse
|
129
|
Ruiz Pestana L, Marsalek O, Markland TE, Head-Gordon T. The Quest for Accurate Liquid Water Properties from First Principles. J Phys Chem Lett 2018; 9:5009-5016. [PMID: 30118601 DOI: 10.1021/acs.jpclett.8b02400] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Developing accurate ab initio molecular dynamics (AIMD) models that capture both electronic reorganization and nuclear quantum effects associated with hydrogen bonding is key to quantitative understanding of bulk water and its anomalies as well as its role as a universal solvent. For condensed phase simulations, AIMD has typically relied on the generalized gradient approximation (GGA) of density functional theory (DFT) as the underlying model chemistry for the potential energy surface, with nuclear quantum effects (NQEs) sometimes modeled by performing classical molecular dynamics simulations at elevated temperatures. Here we show that the properties of liquid water obtained from the meta-GGA B97M-rV functional, when evaluated using accelerated path integral molecular dynamics simulations, display accuracy comparable to a computationally expensive dispersion-corrected hybrid functional, revPBE0-D3. We show that the meta-GGA DFT functional reproduces bulk water properties including radial distribution functions, self-diffusion coefficients, and infrared spectra with comparable accuracy of a much more expensive hybrid functional. This work demonstrates that the underlying quality of a good DFT functional requires evaluation with quantum nuclei and that high-temperature simulations are a poor proxy for properly treating NQEs.
Collapse
Affiliation(s)
| | - Ondrej Marsalek
- Charles University , Faculty of Mathematics and Physics , Ke Karlovu 3 , 121 16 Prague 2 , Czech Republic
| | - Thomas E Markland
- Department of Chemistry , Stanford University , Stanford , California 94305 , United States
| | | |
Collapse
|
130
|
Shi Y, Scheiber H, Khaliullin RZ. Contribution of the Covalent Component of the Hydrogen-Bond Network to the Properties of Liquid Water. J Phys Chem A 2018; 122:7482-7490. [PMID: 30157633 DOI: 10.1021/acs.jpca.8b06857] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yifei Shi
- Department of Chemistry, McGill University, 801 Sherbrooke St. West, Montreal, QC H3A0B8, Canada
| | - Hayden Scheiber
- Department of Chemistry, McGill University, 801 Sherbrooke St. West, Montreal, QC H3A0B8, Canada
| | - Rustam Z. Khaliullin
- Department of Chemistry, McGill University, 801 Sherbrooke St. West, Montreal, QC H3A0B8, Canada
| |
Collapse
|
131
|
Kananenka AA, Skinner JL. Fermi resonance in OH-stretch vibrational spectroscopy of liquid water and the water hexamer. J Chem Phys 2018; 148:244107. [DOI: 10.1063/1.5037113] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Alexei A. Kananenka
- Institute for Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA
| | - J. L. Skinner
- Institute for Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA
| |
Collapse
|
132
|
Napoli JA, Marsalek O, Markland TE. Decoding the spectroscopic features and time scales of aqueous proton defects. J Chem Phys 2018; 148:222833. [PMID: 29907063 DOI: 10.1063/1.5023704] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Acid solutions exhibit a variety of complex structural and dynamical features arising from the presence of multiple interacting reactive proton defects and counterions. However, disentangling the transient structural motifs of proton defects in the water hydrogen bond network and the mechanisms for their interconversion remains a formidable challenge. Here, we use simulations treating the quantum nature of both the electrons and nuclei to show how the experimentally observed spectroscopic features and relaxation time scales can be elucidated using a physically transparent coordinate that encodes the overall asymmetry of the solvation environment of the proton defect. We demonstrate that this coordinate can be used both to discriminate the extremities of the features observed in the linear vibrational spectrum and to explain the molecular motions that give rise to the interconversion time scales observed in recent nonlinear experiments. This analysis provides a unified condensed-phase picture of the proton structure and dynamics that, at its extrema, encompasses proton sharing and spectroscopic features resembling the limiting Eigen [H3O(H2O)3]+ and Zundel [H(H2O)2]+ gas-phase structures, while also describing the rich variety of interconverting environments in the liquid phase.
Collapse
Affiliation(s)
- Joseph A Napoli
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Ondrej Marsalek
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Thomas E Markland
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| |
Collapse
|
133
|
Hofer TS, Hünenberger PH. Absolute proton hydration free energy, surface potential of water, and redox potential of the hydrogen electrode from first principles: QM/MM MD free-energy simulations of sodium and potassium hydration. J Chem Phys 2018; 148:222814. [DOI: 10.1063/1.5000799] [Citation(s) in RCA: 60] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Affiliation(s)
- Thomas S. Hofer
- Theoretical Chemistry Division, Institute of General, Inorganic and Theoretical Chemistry, Centre for Chemistry and Biomedicine, University of Innsbruck, Innrain 80-82, A-6020 Innsbruck, Austria
| | | |
Collapse
|
134
|
Gaiduk AP, Gustafson J, Gygi F, Galli G. First-Principles Simulations of Liquid Water Using a Dielectric-Dependent Hybrid Functional. J Phys Chem Lett 2018; 9:3068-3073. [PMID: 29768015 DOI: 10.1021/acs.jpclett.8b01017] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We carried out first-principles simulations of liquid water under ambient conditions using a dielectric-dependent hybrid functional, where the fraction of exact exchange is set equal to the inverse of the high-frequency dielectric constant of the liquid. We found excellent agreement with experiment for the oxygen-oxygen partial correlation function at the experimental equilibrium density and 311 ± 3 K. Other structural and dynamical properties, such as the diffusion coefficient, molecular dipole moments, and vibrational spectra, are also in good agreement with experiment. Our results, together with previous findings on electronic properties of the liquid with the same functional, show that the dielectric-dependent hybrid functional accurately describes both the structural and electronic properties of liquid water.
Collapse
Affiliation(s)
- Alex P Gaiduk
- Institute for Molecular Engineering , The University of Chicago , Chicago , Illinois 60637 , United States
- Materials Science Division , Argonne National Laboratory , Argonne , Illinois 60439 , United States
| | - Jeffrey Gustafson
- Department of Chemistry , The University of Chicago , Chicago , Illinois 60637 , United States
| | - François Gygi
- Department of Computer Science , University of California , Davis , California 95616 , United States
| | - Giulia Galli
- Institute for Molecular Engineering , The University of Chicago , Chicago , Illinois 60637 , United States
- Materials Science Division , Argonne National Laboratory , Argonne , Illinois 60439 , United States
- Department of Chemistry , The University of Chicago , Chicago , Illinois 60637 , United States
| |
Collapse
|
135
|
Mishra PK, Bettaque V, Vendrell O, Santra R, Welsch R. Prospects of Using High-Intensity THz Pulses To Induce Ultrafast Temperature-Jumps in Liquid Water. J Phys Chem A 2018; 122:5211-5222. [DOI: 10.1021/acs.jpca.8b00828] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Pankaj Kr. Mishra
- Center for Free-Electron Laser Science, DESY, Notkestraße 85, D-22607 Hamburg, Germany
- The Hamburg Centre for Ultrafast Imaging, University of Hamburg, Luruper Chaussee 149, D-22761 Hamburg, Germany
| | - Vincent Bettaque
- Department of Physics, University of Hamburg, Jungiusstraße 9, D-20355 Hamburg, Germany
| | - Oriol Vendrell
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - Robin Santra
- Center for Free-Electron Laser Science, DESY, Notkestraße 85, D-22607 Hamburg, Germany
- The Hamburg Centre for Ultrafast Imaging, University of Hamburg, Luruper Chaussee 149, D-22761 Hamburg, Germany
- Department of Physics, University of Hamburg, Jungiusstraße 9, D-20355 Hamburg, Germany
| | - Ralph Welsch
- Center for Free-Electron Laser Science, DESY, Notkestraße 85, D-22607 Hamburg, Germany
| |
Collapse
|
136
|
Śmiechowski M. Unusual Influence of Fluorinated Anions on the Stretching Vibrations of Liquid Water. J Phys Chem B 2018. [PMID: 29513989 DOI: 10.1021/acs.jpcb.7b11334] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Infrared (IR) spectroscopy is a commonly used and invaluable tool in the studies of solvation phenomena in aqueous solutions. Concurrently, ab initio molecular dynamics (AIMD) simulations deliver the solvation shell picture at a molecular detail level and allow for a consistent decomposition of the theoretical IR spectrum into underlying spatial correlations. Here, we demonstrate how the novel spectral decomposition techniques can extract important information from the computed IR spectra of aqueous solutions of BF4- and PF6-, interesting weakly coordinating anions that have been known for a long time to alter the IR spectrum of water in an unusual manner. The distance-dependent spectra of both ions are analyzed using the spectral similarity method that provides a quantitative picture of both the spectrum of the solute-affected solvent and the number of solvent molecules thus altered. We find, in accordance with previous experiments, a considerable blue shift of the νOH stretching band of liquid water by 264 cm-1 for BF4- and 306 cm-1 for PF6-, with the affected numbers being 3.7 and 4.2, respectively. Considering also the additional information on solute-solvent dipolar couplings delivered by radially and spatially resolved IR spectra, the computational IR spectroscopy based on AIMD simulations is shown to be a viable predictive tool with strong interpretative power.
Collapse
Affiliation(s)
- Maciej Śmiechowski
- Department of Physical Chemistry, Chemical Faculty , Gdańsk University of Technology , Narutowicza 11/12 , 80-233 Gdańsk , Poland
| |
Collapse
|
137
|
Machida M, Kato K, Shiga M. Nuclear quantum effects of light and heavy water studied by all-electron first principles path integral simulations. J Chem Phys 2018; 148:102324. [DOI: 10.1063/1.5000091] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Affiliation(s)
- Masahiko Machida
- CCSE, Japan Atomic Energy Agency (JAEA), 178-4-4, Wakashiba, Kashiwa, Chiba 277-0871, Japan
| | - Koichiro Kato
- Mizuho Information and Research Institute, Inc., 2-3, Kandanishiki-cho, Chiyoda-ku, Tokyo 101-8443, Japan
| | - Motoyuki Shiga
- CCSE, Japan Atomic Energy Agency (JAEA), 178-4-4, Wakashiba, Kashiwa, Chiba 277-0871, Japan
| |
Collapse
|
138
|
Poltavsky I, DiStasio RA, Tkatchenko A. Perturbed path integrals in imaginary time: Efficiently modeling nuclear quantum effects in molecules and materials. J Chem Phys 2018; 148:102325. [DOI: 10.1063/1.5006596] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Affiliation(s)
- Igor Poltavsky
- Physics and Materials Science Research Unit, University of Luxembourg, Luxembourg L-1511, Luxembourg
| | - Robert A. DiStasio
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, USA
| | - Alexandre Tkatchenko
- Physics and Materials Science Research Unit, University of Luxembourg, Luxembourg L-1511, Luxembourg
| |
Collapse
|
139
|
Rossi M, Kapil V, Ceriotti M. Fine tuning classical and quantum molecular dynamics using a generalized Langevin equation. J Chem Phys 2018; 148:102301. [DOI: 10.1063/1.4990536] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Mariana Rossi
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Venkat Kapil
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Michele Ceriotti
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| |
Collapse
|
140
|
|
141
|
Affiliation(s)
- Xinzijian Liu
- Beijing National Laboratory For Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing, China
| | - Jian Liu
- Beijing National Laboratory For Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing, China
| |
Collapse
|
142
|
Morawietz T, Marsalek O, Pattenaude SR, Streacker LM, Ben-Amotz D, Markland TE. The Interplay of Structure and Dynamics in the Raman Spectrum of Liquid Water over the Full Frequency and Temperature Range. J Phys Chem Lett 2018; 9:851-857. [PMID: 29394069 DOI: 10.1021/acs.jpclett.8b00133] [Citation(s) in RCA: 70] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
While many vibrational Raman spectroscopy studies of liquid water have investigated the temperature dependence of the high-frequency O-H stretching region, few have analyzed the changes in the Raman spectrum as a function of temperature over the entire spectral range. Here, we obtain the Raman spectra of water from its melting to boiling point, both experimentally and from simulations using an ab initio-trained machine learning potential. We use these to assign the Raman bands and show that the entire spectrum can be well described as a combination of two temperature-independent spectra. We then assess which spectral regions exhibit strong dependence on the local tetrahedral order in the liquid. Further, this work demonstrates that changes in this structural parameter can be used to elucidate the temperature dependence of the Raman spectrum of liquid water and provides a guide to the Raman features that signal water ordering in more complex aqueous systems.
Collapse
Affiliation(s)
- Tobias Morawietz
- Department of Chemistry, Stanford University , Stanford, California 94305, United States
| | - Ondrej Marsalek
- Charles University, Faculty of Mathematics and Physics, Ke Karlovu 3, 121 16 Prague 2, Czech Republic
| | - Shannon R Pattenaude
- Department of Chemistry, Purdue University , West Lafayette, Indiana 47907, United States
| | - Louis M Streacker
- Department of Chemistry, Purdue University , West Lafayette, Indiana 47907, United States
| | - Dor Ben-Amotz
- Department of Chemistry, Purdue University , West Lafayette, Indiana 47907, United States
| | - Thomas E Markland
- Department of Chemistry, Stanford University , Stanford, California 94305, United States
| |
Collapse
|
143
|
Matt SM, Ben-Amotz D. Influence of Intermolecular Coupling on the Vibrational Spectrum of Water. J Phys Chem B 2018; 122:5375-5380. [PMID: 29298478 DOI: 10.1021/acs.jpcb.7b11063] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sarah M. Matt
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Dor Ben-Amotz
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| |
Collapse
|
144
|
Wiktor J, Ambrosio F, Pasquarello A. Note: Assessment of the SCAN+rVV10 functional for the structure of liquid water. J Chem Phys 2017; 147:216101. [DOI: 10.1063/1.5006146] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Julia Wiktor
- Chaire de Simulation à l’Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Francesco Ambrosio
- Chaire de Simulation à l’Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Alfredo Pasquarello
- Chaire de Simulation à l’Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| |
Collapse
|
145
|
Riera M, Mardirossian N, Bajaj P, Götz AW, Paesani F. Toward chemical accuracy in the description of ion–water interactions through many-body representations. Alkali-water dimer potential energy surfaces. J Chem Phys 2017; 147:161715. [DOI: 10.1063/1.4993213] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Affiliation(s)
- Marc Riera
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - Narbe Mardirossian
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Pushp Bajaj
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - Andreas W. Götz
- San Diego Supercomputer Center, University of California, San Diego, La Jolla, California 92093, USA
| | - Francesco Paesani
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| |
Collapse
|
146
|
Duignan TT, Baer MD, Schenter GK, Mundy CJ. Real single ion solvation free energies with quantum mechanical simulation. Chem Sci 2017; 8:6131-6140. [PMID: 28989643 PMCID: PMC5625628 DOI: 10.1039/c7sc02138k] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2017] [Accepted: 05/26/2017] [Indexed: 01/11/2023] Open
Abstract
Single ion solvation free energies are one of the most important properties of electrolyte solutions and yet there is ongoing debate about what these values are. Only the values for neutral ion pairs are known. Here, we use DFT interaction potentials with molecular dynamics simulation (DFT-MD) combined with a modified version of the quasi-chemical theory (QCT) to calculate these energies for the lithium and fluoride ions. A method to correct for the error in the DFT functional is developed and very good agreement with the experimental value for the lithium fluoride pair is obtained. Moreover, this method partitions the energies into physically intuitive terms such as surface potential, cavity and charging energies which are amenable to descriptions with reduced models. Our research suggests that lithium's solvation free energy is dominated by the free energetics of a charged hard sphere, whereas fluoride exhibits significant quantum mechanical behavior that cannot be simply described with a reduced model.
Collapse
Affiliation(s)
- Timothy T Duignan
- Physical Science Division , Pacific Northwest National Laboratory , P.O. Box 999 , Richland , Washington 99352 , USA . ; Tel: +1 509 3756940
| | - Marcel D Baer
- Physical Science Division , Pacific Northwest National Laboratory , P.O. Box 999 , Richland , Washington 99352 , USA . ; Tel: +1 509 3756940
| | - Gregory K Schenter
- Physical Science Division , Pacific Northwest National Laboratory , P.O. Box 999 , Richland , Washington 99352 , USA . ; Tel: +1 509 3756940
| | - Christopher J Mundy
- Physical Science Division , Pacific Northwest National Laboratory , P.O. Box 999 , Richland , Washington 99352 , USA . ; Tel: +1 509 3756940
| |
Collapse
|
147
|
Zukowski SR, Mitev PD, Hermansson K, Ben-Amotz D. CO 2 Hydration Shell Structure and Transformation. J Phys Chem Lett 2017; 8:2971-2975. [PMID: 28598626 DOI: 10.1021/acs.jpclett.7b00971] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The hydration-shell of CO2 is characterized using Raman multivariate curve resolution (Raman-MCR) spectroscopy combined with ab initio molecular dynamics (AIMD) vibrational density of states simulations, to validate our assignment of the experimentally observed high-frequency OH band to a weak hydrogen bond between water and CO2. Our results reveal that while the hydration-shell of CO2 is highly tetrahedral, it is also occasionally disrupted by the presence of entropically stabilized defects associated with the CO2-water hydrogen bond. Moreover, we find that the hydration-shell of CO2 undergoes a temperature-dependent structural transformation to a highly disordered (less tetrahedral) structure, reminiscent of the transformation that takes place at higher temperatures around much larger oily molecules. The biological significance of the CO2 hydration shell structural transformation is suggested by the fact that it takes place near physiological temperatures.
Collapse
Affiliation(s)
- Samual R Zukowski
- Department of Chemistry, Purdue University , West Lafayette, Indiana 47907, United States
| | - Pavlin D Mitev
- Department of Chemistry-Ångström, Uppsala University , Box 538, S-75121 Uppsala, Sweden
| | - Kersti Hermansson
- Department of Chemistry-Ångström, Uppsala University , Box 538, S-75121 Uppsala, Sweden
| | - Dor Ben-Amotz
- Department of Chemistry, Purdue University , West Lafayette, Indiana 47907, United States
| |
Collapse
|
148
|
Galib M, Duignan TT, Misteli Y, Baer MD, Schenter GK, Hutter J, Mundy CJ. Mass density fluctuations in quantum and classical descriptions of liquid water. J Chem Phys 2017; 146:244501. [DOI: 10.1063/1.4986284] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Affiliation(s)
- Mirza Galib
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Timothy T. Duignan
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Yannick Misteli
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Marcel D. Baer
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Gregory K. Schenter
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Jürg Hutter
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Christopher J. Mundy
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| |
Collapse
|
149
|
Unravelling the influence of quantum proton delocalization on electronic charge transfer through the hydrogen bond. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.04.034] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|