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For: Kilburn D, Roh JH, Guo L, Briber RM, Woodson SA. Molecular crowding stabilizes folded RNA structure by the excluded volume effect. J Am Chem Soc 2010;132:8690-6. [PMID: 20521820 DOI: 10.1021/ja101500g] [Citation(s) in RCA: 150] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
101
Awazu A. Segregation and phase inversion of strongly and weakly fluctuating Brownian particle mixtures and a chain of such particle mixtures in spherical containers. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014;90:042308. [PMID: 25375495 DOI: 10.1103/physreve.90.042308] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2014] [Indexed: 06/04/2023]
102
Hyeon C, Denesyuk NA, Thirumalai D. Development and Applications of Coarse-Grained Models for RNA. Isr J Chem 2014. [DOI: 10.1002/ijch.201400029] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
103
Nakano SI, Kitagawa Y, Miyoshi D, Sugimoto N. Hammerhead ribozyme activity and oligonucleotide duplex stability in mixed solutions of water and organic compounds. FEBS Open Bio 2014;4:643-50. [PMID: 25161873 PMCID: PMC4141205 DOI: 10.1016/j.fob.2014.06.009] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2014] [Revised: 06/13/2014] [Accepted: 06/27/2014] [Indexed: 12/23/2022]  Open
104
Tan SM, Altschuler G, Zhao TY, Ang HS, Yang H, Lim B, Vardy L, Hide W, Thomson AM, Lareu RR. Divergent LIN28-mRNA associations result in translational suppression upon the initiation of differentiation. Nucleic Acids Res 2014;42:7997-8007. [PMID: 24860167 PMCID: PMC4081066 DOI: 10.1093/nar/gku430] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
105
Molecular-crowding effects on single-molecule RNA folding/unfolding thermodynamics and kinetics. Proc Natl Acad Sci U S A 2014;111:8464-9. [PMID: 24850865 DOI: 10.1073/pnas.1316039111] [Citation(s) in RCA: 115] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
106
Song Y, Liu KJ, Wang TH. Elimination of ligation dependent artifacts in T4 RNA ligase to achieve high efficiency and low bias microRNA capture. PLoS One 2014;9:e94619. [PMID: 24722341 PMCID: PMC3983213 DOI: 10.1371/journal.pone.0094619] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2013] [Accepted: 03/18/2014] [Indexed: 01/22/2023]  Open
107
Cao C, Wang QB, Tang LJ, Ge BQ, Chen ZX, Deng SP. Chain-Length-Dependent Autocatalytic Hydrolysis of Fatty Acid Anhydrides in Polyethylene Glycol. J Phys Chem B 2014;118:3461-8. [DOI: 10.1021/jp4125233] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
108
Strulson CA, Boyer JA, Whitman EE, Bevilacqua PC. Molecular crowders and cosolutes promote folding cooperativity of RNA under physiological ionic conditions. RNA (NEW YORK, N.Y.) 2014;20:331-47. [PMID: 24442612 PMCID: PMC3923128 DOI: 10.1261/rna.042747.113] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2013] [Accepted: 11/22/2013] [Indexed: 05/21/2023]
109
Aumiller WM, Davis BW, Hashemian N, Maranas C, Armaou A, Keating CD. Coupled enzyme reactions performed in heterogeneous reaction media: experiments and modeling for glucose oxidase and horseradish peroxidase in a PEG/citrate aqueous two-phase system. J Phys Chem B 2014;118:2506-17. [PMID: 24517887 PMCID: PMC3983363 DOI: 10.1021/jp501126v] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
110
Sugimoto N. Noncanonical structures and their thermodynamics of DNA and RNA under molecular crowding: beyond the Watson-Crick double helix. INTERNATIONAL REVIEW OF CELL AND MOLECULAR BIOLOGY 2014;307:205-73. [PMID: 24380597 DOI: 10.1016/b978-0-12-800046-5.00008-4] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
111
Nakano SI, Miyoshi D, Sugimoto N. Effects of molecular crowding on the structures, interactions, and functions of nucleic acids. Chem Rev 2013;114:2733-58. [PMID: 24364729 DOI: 10.1021/cr400113m] [Citation(s) in RCA: 375] [Impact Index Per Article: 34.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
112
Molecular crowding inhibits U-insertion/deletion RNA editing in vitro: consequences for the in vivo reaction. PLoS One 2013;8:e83796. [PMID: 24376749 PMCID: PMC3871654 DOI: 10.1371/journal.pone.0083796] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2013] [Accepted: 11/16/2013] [Indexed: 01/02/2023]  Open
113
Desai R, Kilburn D, Lee HT, Woodson SA. Increased ribozyme activity in crowded solutions. J Biol Chem 2013;289:2972-7. [PMID: 24337582 DOI: 10.1074/jbc.m113.527861] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
114
Novikova IV, Hennelly SP, Sanbonmatsu KY. Tackling structures of long noncoding RNAs. Int J Mol Sci 2013;14:23672-84. [PMID: 24304541 PMCID: PMC3876070 DOI: 10.3390/ijms141223672] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2013] [Revised: 11/15/2013] [Accepted: 11/25/2013] [Indexed: 11/16/2022]  Open
115
Tateishi-Karimta H, Sugimoto N. Control of stability and structure of nucleic acids using cosolutes. Methods 2013;67:151-8. [PMID: 24270066 DOI: 10.1016/j.ymeth.2013.11.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2013] [Revised: 10/29/2013] [Accepted: 11/12/2013] [Indexed: 12/25/2022]  Open
116
Tyrrell J, McGinnis JL, Weeks KM, Pielak GJ. The cellular environment stabilizes adenine riboswitch RNA structure. Biochemistry 2013;52:8777-85. [PMID: 24215455 DOI: 10.1021/bi401207q] [Citation(s) in RCA: 88] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
117
Strulson CA, Yennawar NH, Rambo RP, Bevilacqua PC. Molecular crowding favors reactivity of a human ribozyme under physiological ionic conditions. Biochemistry 2013;52:8187-97. [PMID: 24187989 PMCID: PMC3882164 DOI: 10.1021/bi400816s] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
118
Pincus DL, Thirumalai D. Force-induced unzipping transitions in an athermal crowded environment. J Phys Chem B 2013;117:13107-14. [PMID: 23789729 DOI: 10.1021/jp402922q] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
119
Qin S, Zhou HX. Effects of Macromolecular Crowding on the Conformational Ensembles of Disordered Proteins. J Phys Chem Lett 2013;4:10.1021/jz401817x. [PMID: 24312701 PMCID: PMC3846091 DOI: 10.1021/jz401817x] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
120
Cui J, Waltman P, Le VH, Lewis EA. The effect of molecular crowding on the stability of human c-MYC promoter sequence I-motif at neutral pH. Molecules 2013;18:12751-67. [PMID: 24132198 PMCID: PMC6270392 DOI: 10.3390/molecules181012751] [Citation(s) in RCA: 86] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2013] [Revised: 09/26/2013] [Accepted: 10/10/2013] [Indexed: 12/20/2022]  Open
121
Trachman RJ, Draper DE. Comparison of interactions of diamine and Mg²⁺ with RNA tertiary structures: similar versus differential effects on the stabilities of diverse RNA folds. Biochemistry 2013;52:5911-9. [PMID: 23899366 PMCID: PMC3809084 DOI: 10.1021/bi400529q] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
122
Shand O, Volz K. The solution structure of apo-iron regulatory protein 1. Gene 2013;524:341-6. [DOI: 10.1016/j.gene.2013.03.112] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2012] [Revised: 03/18/2013] [Accepted: 03/25/2013] [Indexed: 10/27/2022]
123
Kilburn D, Roh JH, Behrouzi R, Briber RM, Woodson SA. Crowders perturb the entropy of RNA energy landscapes to favor folding. J Am Chem Soc 2013;135:10055-63. [PMID: 23773075 DOI: 10.1021/ja4030098] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
124
Tateishi-Karimata H, Nakano SI, Sugimoto N. Quantitative analyses of nucleic Acid stability under the molecular crowding condition induced by cosolutes. CURRENT PROTOCOLS IN NUCLEIC ACID CHEMISTRY 2013;Chapter 7:7.19.1-7.19.17. [PMID: 23775810 DOI: 10.1002/0471142700.nc0719s53] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
125
Fujii M, Nishimori H, Awazu A. Influences of excluded volume of molecules on signaling processes on the biomembrane. PLoS One 2013;8:e62218. [PMID: 23658714 PMCID: PMC3642174 DOI: 10.1371/journal.pone.0062218] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2012] [Accepted: 03/18/2013] [Indexed: 01/25/2023]  Open
126
Denesyuk NA, Thirumalai D. Entropic stabilization of the folded states of RNA due to macromolecular crowding. Biophys Rev 2013;5:225-232. [PMID: 28510164 DOI: 10.1007/s12551-013-0119-x] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2013] [Accepted: 03/25/2013] [Indexed: 11/25/2022]  Open
127
Prediction of hammerhead ribozyme intracellular activity with the catalytic core fingerprint. Biochem J 2013;451:439-51. [DOI: 10.1042/bj20121761] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
128
Gu X, Nguyen MT, Overacre A, Seaton S, Schroeder SJ. Effects of salt, polyethylene glycol, and locked nucleic acids on the thermodynamic stabilities of consecutive terminal adenosine mismatches in RNA duplexes. J Phys Chem B 2013;117:3531-40. [PMID: 23480443 DOI: 10.1021/jp312154d] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
129
Tan ZJ, Chen SJ. Ion-mediated RNA structural collapse: effect of spatial confinement. Biophys J 2013;103:827-36. [PMID: 22947944 DOI: 10.1016/j.bpj.2012.06.048] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2012] [Revised: 06/25/2012] [Accepted: 06/27/2012] [Indexed: 12/28/2022]  Open
130
Effects of long DNA folding and small RNA stem-loop in thermophoresis. Proc Natl Acad Sci U S A 2012;109:17972-7. [PMID: 23071341 DOI: 10.1073/pnas.1215764109] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
131
Miyoshi D, Fujimoto T, Sugimoto N. Molecular Crowding and Hydration Regulating of G-Quadruplex Formation. Top Curr Chem (Cham) 2012;330:87-110. [DOI: 10.1007/128_2012_335] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
132
Protein crowding impedes pressure-induced unfolding of staphylococcal nuclease. Biochim Biophys Acta Gen Subj 2012;1820:957-61. [DOI: 10.1016/j.bbagen.2012.03.019] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2012] [Revised: 03/29/2012] [Accepted: 03/30/2012] [Indexed: 11/17/2022]
133
Nakano SI, Hirayama H, Miyoshi D, Sugimoto N. Dimerization of nucleic acid hairpins in the conditions caused by neutral cosolutes. J Phys Chem B 2012;116:7406-15. [PMID: 22703387 DOI: 10.1021/jp302170f] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
134
Behrouzi R, Roh JH, Kilburn D, Briber RM, Woodson SA. Cooperative tertiary interaction network guides RNA folding. Cell 2012;149:348-57. [PMID: 22500801 DOI: 10.1016/j.cell.2012.01.057] [Citation(s) in RCA: 77] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2011] [Revised: 11/02/2011] [Accepted: 01/26/2012] [Indexed: 01/06/2023]
135
Kudlay A, Cheung MS, Thirumalai D. Influence of the shape of crowding particles on the structural transitions in a polymer. J Phys Chem B 2012;116:8513-22. [PMID: 22616622 DOI: 10.1021/jp212535n] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
136
Beckford SJ, Dixon DW. Molecular Dynamics of Anthraquinone DNA Intercalators with Polyethylene Glycol Side Chains. J Biomol Struct Dyn 2012;29:1065-80. [DOI: 10.1080/073911012010525031] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
137
Loakes D. Nucleotides and nucleic acids; oligo- and polynucleotides. ORGANOPHOSPHORUS CHEMISTRY 2012. [DOI: 10.1039/9781849734875-00169] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
138
Lease RA, Arluison V, Lavelle C. Twins, quadruplexes, and more: functional aspects of native and engineered RNA self-assembly in vivo.. FRONTIERS IN LIFE SCIENCE 2012;6:19-32. [PMID: 23914307 PMCID: PMC3725660 DOI: 10.1080/21553769.2012.761163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/05/2012] [Revised: 12/18/2012] [Indexed: 11/23/2022]
139
Pechlaner M, Sigel RKO. Characterization of metal ion-nucleic acid interactions in solution. Met Ions Life Sci 2012;10:1-42. [PMID: 22210334 DOI: 10.1007/978-94-007-2172-2_1] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
140
Kumar V, Endoh T, Murakami K, Sugimoto N. Dehydration from conserved stem regions is fundamental for ligand-dependent conformational transition of the adenine-specific riboswitch. Chem Commun (Camb) 2012;48:9693-5. [DOI: 10.1039/c2cc34506d] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
141
Butcher SE, Pyle AM. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks. Acc Chem Res 2011;44:1302-11. [PMID: 21899297 DOI: 10.1021/ar200098t] [Citation(s) in RCA: 239] [Impact Index Per Article: 18.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
142
Pramanik S, Nagatoishi S, Saxena S, Bhattacharyya J, Sugimoto N. Conformational flexibility influences degree of hydration of nucleic acid hybrids. J Phys Chem B 2011;115:13862-72. [PMID: 21992117 DOI: 10.1021/jp207856p] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
143
Blose JM, Pabit SA, Meisburger SP, Li L, Jones CD, Pollack L. Effects of a protecting osmolyte on the ion atmosphere surrounding DNA duplexes. Biochemistry 2011;50:8540-7. [PMID: 21882885 DOI: 10.1021/bi200710m] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
144
Pollack L. SAXS studies of ion-nucleic acid interactions. Annu Rev Biophys 2011;40:225-42. [PMID: 21332357 DOI: 10.1146/annurev-biophys-042910-155349] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
145
Lane AN. The stability of intramolecular DNA G-quadruplexes compared with other macromolecules. Biochimie 2011;94:277-86. [PMID: 21854828 DOI: 10.1016/j.biochi.2011.08.004] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2011] [Accepted: 08/04/2011] [Indexed: 11/19/2022]
146
Denesyuk NA, Thirumalai D. Crowding Promotes the Switch from Hairpin to Pseudoknot Conformation in Human Telomerase RNA. J Am Chem Soc 2011;133:11858-61. [DOI: 10.1021/ja2035128] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
147
Krstić I, Hänsel R, Romainczyk O, Engels JW, Dötsch V, Prisner TF. Long-Range Distance Measurements on Nucleic Acids in Cells by Pulsed EPR Spectroscopy. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201100886] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
148
Krstić I, Hänsel R, Romainczyk O, Engels JW, Dötsch V, Prisner TF. Long-range distance measurements on nucleic acids in cells by pulsed EPR spectroscopy. Angew Chem Int Ed Engl 2011;50:5070-4. [PMID: 21506223 DOI: 10.1002/anie.201100886] [Citation(s) in RCA: 139] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2011] [Indexed: 12/18/2022]
149
Topological constraints: using RNA secondary structure to model 3D conformation, folding pathways, and dynamic adaptation. Curr Opin Struct Biol 2011;21:296-305. [PMID: 21497083 DOI: 10.1016/j.sbi.2011.03.009] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2011] [Revised: 03/10/2011] [Accepted: 03/22/2011] [Indexed: 12/14/2022]
150
Feng B, Frykholm K, Nordén B, Westerlund F. DNA strand exchange catalyzed by molecular crowding in PEG solutions. Chem Commun (Camb) 2010;46:8231-3. [DOI: 10.1039/c0cc03117h] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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