101
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Wang Y, Bowman JM. Ab initio potential and dipole moment surfaces for water. II. Local-monomer calculations of the infrared spectra of water clusters. J Chem Phys 2011; 134:154510. [DOI: 10.1063/1.3579995] [Citation(s) in RCA: 116] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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102
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Yoo S, Xantheas SS. Communication: The effect of dispersion corrections on the melting temperature of liquid water. J Chem Phys 2011; 134:121105. [DOI: 10.1063/1.3573375] [Citation(s) in RCA: 139] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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103
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Paesani F. Temperature-Dependent Infrared Spectroscopy of Water from a First-Principles Approach. J Phys Chem A 2011; 115:6861-71. [DOI: 10.1021/jp111426r] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Francesco Paesani
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States
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104
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Elking DM, Perera L, Duke R, Darden T, Pedersen LG. Atomic forces for geometry-dependent point multipole and gaussian multipole models. J Comput Chem 2010; 31:2702-13. [PMID: 20839297 DOI: 10.1002/jcc.21563] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
In standard treatments of atomic multipole models, interaction energies, total molecular forces, and total molecular torques are given for multipolar interactions between rigid molecules. However, if the molecules are assumed to be flexible, two additional multipolar atomic forces arise because of (1) the transfer of torque between neighboring atoms and (2) the dependence of multipole moment on internal geometry (bond lengths, bond angles, etc.) for geometry-dependent multipole models. In this study, atomic force expressions for geometry-dependent multipoles are presented for use in simulations of flexible molecules. The atomic forces are derived by first proposing a new general expression for Wigner function derivatives partial derivative D(m'm)(l)/partial derivative Omega. The force equations can be applied to electrostatic models based on atomic point multipoles or gaussian multipole charge density. Hydrogen-bonded dimers are used to test the intermolecular electrostatic energies and atomic forces calculated by geometry-dependent multipoles fit to the ab initio electrostatic potential. The electrostatic energies and forces are compared with their reference ab initio values. It is shown that both static and geometry-dependent multipole models are able to reproduce total molecular forces and torques with respect to ab initio, whereas geometry-dependent multipoles are needed to reproduce ab initio atomic forces. The expressions for atomic force can be used in simulations of flexible molecules with atomic multipoles. In addition, the results presented in this work should lead to further development of next generation force fields composed of geometry-dependent multipole models.
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Affiliation(s)
- Dennis M Elking
- Laboratory of Structural Biology, National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709, USA
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105
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Li F, Skinner JL. Infrared and Raman line shapes for ice Ih. I. Dilute HOD in H(2)O and D(2)O. J Chem Phys 2010; 132:204505. [PMID: 20515098 DOI: 10.1063/1.3430518] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
Vibrational spectroscopy of ice Ih provides information about structure, dynamics, and vibrational coupling in this important substance. Vibrational spectra are simplified for HOD in either H(2)O or D(2)O, as in these instances the OD or OH stretch, respectively, functions as a local chromophore. As a first step in providing a theoretical treatment of the vibrational spectroscopy for the fully coupled system (H(2)O or D(2)O), herein we calculate the infrared and Raman spectra for the isotopically substituted systems. The calculation involves a classical molecular dynamics simulation using a new water model, an initial proton-disordered ice configuration, and ab initio based transition frequency, dipole, and polarizability maps. Our theoretical results are in reasonable agreement with experiment, and from our results we provide molecular and physical interpretations for the spectral features.
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Affiliation(s)
- F Li
- Department of Chemistry and Theoretical Chemistry Institute, University of Wisconsin, Madison, Wisconsin 53706, USA
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106
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Wang Y, Bowman JM. Towards an ab initio flexible potential for water, and post-harmonic quantum vibrational analysis of water clusters. Chem Phys Lett 2010. [DOI: 10.1016/j.cplett.2010.03.025] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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107
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Hyeon-Deuk K, Ando K. Quantum effects of hydrogen atoms on the dynamical rearrangement of hydrogen-bond networks in liquid water. J Chem Phys 2010; 132:164507. [DOI: 10.1063/1.3397809] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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108
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Xu W, Yang J. Computer Simulations on Aggregation of Acetic Acid in the Gas Phase, Liquid Phase, and Supercritical Carbon Dioxide. J Phys Chem A 2010; 114:5377-88. [DOI: 10.1021/jp100040j] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Wenhao Xu
- Department of Chemical Engineering, Tsinghua University, Beijing 100084, PR China
| | - Jichu Yang
- Department of Chemical Engineering, Tsinghua University, Beijing 100084, PR China
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109
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Xu W, Yang J. A Computer Simulation Study on Self- and Cross-Aggregation of Multiple Polar Species in Supercritical Carbon Dioxide. J Phys Chem A 2010; 114:5414-28. [DOI: 10.1021/jp101092v] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Wenhao Xu
- Department of Chemical Engineering, Tsinghua University, Beijing 100084, PR China
| | - Jichu Yang
- Department of Chemical Engineering, Tsinghua University, Beijing 100084, PR China
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110
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Ivanov SD, Witt A, Shiga M, Marx D. Communications: On artificial frequency shifts in infrared spectra obtained from centroid molecular dynamics: Quantum liquid water. J Chem Phys 2010; 132:031101. [DOI: 10.1063/1.3290958] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
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111
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Sterpone F, Stirnemann G, Hynes JT, Laage D. Water Hydrogen-Bond Dynamics around Amino Acids: The Key Role of Hydrophilic Hydrogen-Bond Acceptor Groups. J Phys Chem B 2010; 114:2083-9. [DOI: 10.1021/jp9119793] [Citation(s) in RCA: 105] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Fabio Sterpone
- Department of Chemistry, Ecole Normale Supérieure, 24 rue Lhomond 75005 Paris, France, UMR ENS-CNRS-UPMC 8640, 24 rue Lhomond 75005 Paris, France, Fondation Pierre Gilles de Gennes pour la Recherche, Paris, France, and Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215
| | - Guillaume Stirnemann
- Department of Chemistry, Ecole Normale Supérieure, 24 rue Lhomond 75005 Paris, France, UMR ENS-CNRS-UPMC 8640, 24 rue Lhomond 75005 Paris, France, Fondation Pierre Gilles de Gennes pour la Recherche, Paris, France, and Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215
| | - James T. Hynes
- Department of Chemistry, Ecole Normale Supérieure, 24 rue Lhomond 75005 Paris, France, UMR ENS-CNRS-UPMC 8640, 24 rue Lhomond 75005 Paris, France, Fondation Pierre Gilles de Gennes pour la Recherche, Paris, France, and Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215
| | - Damien Laage
- Department of Chemistry, Ecole Normale Supérieure, 24 rue Lhomond 75005 Paris, France, UMR ENS-CNRS-UPMC 8640, 24 rue Lhomond 75005 Paris, France, Fondation Pierre Gilles de Gennes pour la Recherche, Paris, France, and Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215
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112
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Paesani F, Voth GA. A quantitative assessment of the accuracy of centroid molecular dynamics for the calculation of the infrared spectrum of liquid water. J Chem Phys 2010; 132:014105. [DOI: 10.1063/1.3291212] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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113
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Habershon S, Manolopoulos DE. Zero point energy leakage in condensed phase dynamics: An assessment of quantum simulation methods for liquid water. J Chem Phys 2009; 131:244518. [DOI: 10.1063/1.3276109] [Citation(s) in RCA: 108] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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114
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Szalewicz K, Leforestier C, van der Avoird A. Towards the complete understanding of water by a first-principles computational approach. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2009.09.029] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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115
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Liu J, Miller WH, Paesani F, Zhang W, Case DA. Quantum dynamical effects in liquid water: A semiclassical study on the diffusion and the infrared absorption spectrum. J Chem Phys 2009; 131:164509. [PMID: 19894958 DOI: 10.1063/1.3254372] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jian Liu
- Department of Chemistry and K. S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA
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