101
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Carignano M. Monte Carlo simulations of small water clusters: microcanonical vs canonical ensemble. Chem Phys Lett 2002. [DOI: 10.1016/s0009-2614(02)00981-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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102
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103
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104
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105
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Hartke B, Charvat A, Reich M, Abel B. Experimental and theoretical investigation of microsolvation of Na+-ions in the gas phase by high resolution mass spectrometry and global cluster geometry optimization. J Chem Phys 2002. [DOI: 10.1063/1.1436109] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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106
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Calvo F, Doye JPK, Wales DJ. Collapse of Lennard-Jones homopolymers: Size effects and energy landscapes. J Chem Phys 2002. [DOI: 10.1063/1.1435572] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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107
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108
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Calvo F, Doye JPK, Wales DJ. Characterization of anharmonicities on complex potential energy surfaces: Perturbation theory and simulation. J Chem Phys 2001. [DOI: 10.1063/1.1415462] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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109
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Mülken O, Stamerjohanns H, Borrmann P. Origins of phase transitions in small systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2001; 64:047105. [PMID: 11690179 DOI: 10.1103/physreve.64.047105] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2001] [Revised: 06/25/2001] [Indexed: 05/23/2023]
Abstract
The identification and classification of phases in small systems, e.g., nuclei, social and financial networks, clusters, and biological systems, where the traditional definitions of phase transitions are not applicable, is important to obtain a deeper understanding of the phenomena observed in such systems. Within a simple statistical model, we investigate the validity and applicability of different classification schemes for phase transtions in small systems. We show that the whole complex temperature plane contains necessary information in order to give a distinct classification.
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Affiliation(s)
- O Mülken
- Department of Physics, Carl von Ossietzky University Oldenburg, D-26111 Oldenburg, Germany
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110
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Calvo F, Doye JPK, Wales DJ. Quantum partition functions from classical distributions: Application to rare-gas clusters. J Chem Phys 2001. [DOI: 10.1063/1.1359768] [Citation(s) in RCA: 112] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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111
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Mortenson PN, Wales DJ. Energy landscapes, global optimization and dynamics of the polyalanine Ac(ala)8NHMe. J Chem Phys 2001. [DOI: 10.1063/1.1343486] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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112
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Kuo JL, Coe JV, Singer SJ, Band YB, Ojamäe L. On the use of graph invariants for efficiently generating hydrogen bond topologies and predicting physical properties of water clusters and ice. J Chem Phys 2001. [DOI: 10.1063/1.1336804] [Citation(s) in RCA: 99] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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113
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Doye JP. Effect of compression on the global optimization of atomic clusters. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 2000; 62:8753-8761. [PMID: 11138178 DOI: 10.1103/physreve.62.8753] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2000] [Indexed: 05/23/2023]
Abstract
Recently, Locatelli and Schoen proposed a transformation of the potential energy that aids the global optimization of Lennard-Jones clusters with nonicosahedral global minima. These cases are particularly difficult to optimize because the potential energy surface has a double funnel topography with the global minimum at the bottom of the narrower funnel. Here we analyze the effect of this type of transformation on the topography of the potential energy surface. The transformation, which physically corresponds to a compression of the cluster, first reduces the number of stationary points on the potential energy surface. Secondly, we show that for a 38-atom cluster with a face-centered-cubic global minimum the transformation causes the potential energy surface to become increasingly dominated by the funnel associated with the global minimum. The transformation has been incorporated in the basin-hopping algorithm using a two-phase approach.
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Affiliation(s)
- JP Doye
- University Chemical Laboratory, Lensfield Road, Cambridge CB2 1EW, United Kingdom
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114
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Amon LM, Reinhardt WP. Development of reference states for use in absolute free energy calculations of atomic clusters with application to 55-atom Lennard-Jones clusters in the solid and liquid states. J Chem Phys 2000. [DOI: 10.1063/1.1286808] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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115
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Neirotti JP, Calvo F, Freeman DL, Doll JD. Phase changes in 38-atom Lennard-Jones clusters. I. A parallel tempering study in the canonical ensemble. J Chem Phys 2000. [DOI: 10.1063/1.481671] [Citation(s) in RCA: 222] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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116
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Calvo F, Neirotti JP, Freeman DL, Doll JD. Phase changes in 38-atom Lennard-Jones clusters. II. A parallel tempering study of equilibrium and dynamic properties in the molecular dynamics and microcanonical ensembles. J Chem Phys 2000. [DOI: 10.1063/1.481672] [Citation(s) in RCA: 172] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
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117
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Umirzakov IH. Exact equilibrium statistical mechanics of two particles interacting via Lennard-Jones and Morse potentials. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 2000; 61:7188-7191. [PMID: 11088416 DOI: 10.1103/physreve.61.7188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/1999] [Revised: 12/17/1999] [Indexed: 05/23/2023]
Abstract
The exact classical statistical phase-space volume is obtained for a finite system consisting of two particles interacting via both Lennard-Jones and Morse potentials and confined in a spherical volume. The case when the center of mass of the system is fixed at the center of the sphere is also considered. It is shown that the microcanonical caloric curve of the system can have properties similar to those of large clusters, and the equation of state of the system can have behavior similar to that of bulk systems. It is also shown that the fixing of the center of mass of the system can appreciably change the properties of the microcanonical caloric curve and the equation of state of the system.
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Affiliation(s)
- I H Umirzakov
- Institute of Thermophysics, Novosibirsk 630090, Russia
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118
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Calvo F, Spiegelmann F. Mechanisms of phase transitions in sodium clusters: From molecular to bulk behavior. J Chem Phys 2000. [DOI: 10.1063/1.480862] [Citation(s) in RCA: 129] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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119
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Doye JPK, Wales DJ. The dynamics of structural transitions in sodium chloride clusters. J Chem Phys 1999. [DOI: 10.1063/1.480465] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
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120
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Umirzakov IH. Van der Waals type loop in microcanonical caloric curves of finite systems. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1999; 60:7550-3. [PMID: 11970706 DOI: 10.1103/physreve.60.7550] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/1999] [Indexed: 04/18/2023]
Abstract
The entropy is usually related to the energy density of states. This relation is approximate for the finite systems (clusters) and an exact relation connects the entropy with the phase volume of the system. These relations give the same results only in the thermodynamic limit. We consider the microcanonical caloric curves determined via both the approximate and exact relations. It is proved that if the caloric curve obtained from the exact relation has a van der Waals type loop (or S bend), then the caloric curve obtained from the approximate relation has S-bend, and the reverse statement is not correct. Using properties of the system at low and high energies we have shown that a van der Waals type loop in the caloric curve of the finite system requires a positive value of the second derivative of the logarithm of the canonical total energy distribution function at least at one value of the energy. The latter is the weaker necessary condition for S-bend to occur in the caloric curve than that obtained earlier.
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Affiliation(s)
- I H Umirzakov
- Institute of Thermophysics, Novosibirsk 630090, Russia
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121
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Doye JPK, Miller MA, Wales DJ. Evolution of the potential energy surface with size for Lennard-Jones clusters. J Chem Phys 1999. [DOI: 10.1063/1.480217] [Citation(s) in RCA: 199] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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122
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Miller MA, Doye JP, Wales DJ. Structural relaxation in atomic clusters: master equation dynamics. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1999; 60:3701-18. [PMID: 11970203 DOI: 10.1103/physreve.60.3701] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/1999] [Indexed: 04/18/2023]
Abstract
The role of the potential energy landscape in determining the relaxation dynamics of model clusters is studied using a master equation. Two types of energy landscape are examined: a single funnel, as exemplified by 13-atom Morse clusters, and the double funnel landscape of the 38-atom Lennard-Jones cluster. Interwell rate constants are calculated using Rice-Ramsperger-Kassel-Marcus theory within the harmonic approximation, but anharmonic model partition functions are also considered. Decreasing the range of the potential in the Morse clusters is shown to hinder relaxation toward the global minimum, and this effect is related to the concomitant changes in the energy landscape. The relaxation modes that emerge from the master equation are interpreted and analyzed to extract interfunnel rate constants for the Lennard-Jones cluster. Since this system is too large for a complete characterization of the energy landscape, the conditions under which the master equation can be applied to a limited database are explored. Connections are made to relaxation processes in proteins and structural glasses.
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Affiliation(s)
- M A Miller
- University Chemical Laboratories, Lensfield Road, Cambridge CB2 1EW, United Kingdom
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123
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Calvo F. Largest Lyapunov exponent in molecular systems. II: Quaternion coordinates and application to methane clusters. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1999; 60:2771-8. [PMID: 11970082 DOI: 10.1103/physreve.60.2771] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/1999] [Indexed: 04/18/2023]
Abstract
We present a numerical procedure for extracting Lyapunov characteristic exponents from classical molecular-dynamics simulations of molecular systems. The theoretical frame chosen to describe the orientational degrees of freedom is the quaternions scheme. We apply the method to small methane clusters. Two different model potentials are used to investigate the role of internal molecular motion on the nonlinear dynamics, and several parameters are calculated to study the thermodynamics and chaotic dynamics of these clusters. Evidence is found for a solidlike to plasticlike phase transition occurring with the release of the orientational degrees of freedom, at low temperatures below the melting point. The largest Lyapunov exponent increases significantly during this transition, but it exhibits no particular variation during melting.
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Affiliation(s)
- F Calvo
- Laboratoire Collisions, Agrégats, Réactivité, CNRS UMR 5589, Institut de Recherche sur les Systèmes Atomiques et Moléculaires Complexes, Université Paul Sabatier, 118 Route de Narbonne, F31062 Toulouse Cedex, France.
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124
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Maillet JB, Boutin A, Fuchs AH. From molecular clusters to bulk matter. II. Crossover from icosahedral to crystalline structures in CO2 clusters. J Chem Phys 1999. [DOI: 10.1063/1.479478] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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125
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Parneix P, Amar FG, Bréchignac P. On the use of evaporation dynamics to characterize phase transitions in van der Waals clusters: investigations in aniline–(argon) up to n=15. Chem Phys 1998. [DOI: 10.1016/s0301-0104(98)00317-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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126
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Doye JPK, Wales DJ, Miller MA. Thermodynamics and the global optimization of Lennard-Jones clusters. J Chem Phys 1998. [DOI: 10.1063/1.477477] [Citation(s) in RCA: 158] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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127
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128
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Maillet JB, Boutin A, Buttefey S, Calvo F, Fuchs AH. From molecular clusters to bulk matter. I. Structure and thermodynamics of small CO2, N2, and SF6 clusters. J Chem Phys 1998. [DOI: 10.1063/1.476509] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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129
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130
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131
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Affiliation(s)
- F. Calvo
- Laboratoire Collisions, Agrégats, Réactivité (UMR 5589, CNRS), IRSAMC, Université Paul Sabatier, 118 Route de Narbonne, 31062 Toulouse Cédex 4, France
| | - P. Labastie
- Laboratoire Collisions, Agrégats, Réactivité (UMR 5589, CNRS), IRSAMC, Université Paul Sabatier, 118 Route de Narbonne, 31062 Toulouse Cédex 4, France
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132
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Maillet JB, Boutin A, Fuchs AH. The Melting Phase Transition in Small Carbon Dioxide Clusters. MOLECULAR SIMULATION 1997. [DOI: 10.1080/08927029708024158] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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133
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Fanourgakis GS, Farantos SC, Parneix P, Bréchignac P. An effective transition state for a complex cluster isomerization process: Comparison between anharmonic and harmonic models for Mg+Ar12. J Chem Phys 1997. [DOI: 10.1063/1.474081] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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134
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Rytkönen A, Valkealahti S, Manninen M. Melting and evaporation of argon clusters. J Chem Phys 1997. [DOI: 10.1063/1.473327] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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135
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136
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Doye JPK, Wales DJ. On potential energy surfaces and relaxation to the global minimum. J Chem Phys 1996. [DOI: 10.1063/1.472697] [Citation(s) in RCA: 81] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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137
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Calvo F, Labastie P. Evidence for surface melting in clusters made of double icosahedron units. Chem Phys Lett 1996. [DOI: 10.1016/0009-2614(96)00608-2] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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138
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Schön JC, Jansen M. Auf dem Weg zur Syntheseplanung in der Festkörperchemie: Vorhersage existenzfähiger Strukturkandidaten mit Verfahren zur globalen Strukturoptimierung. Angew Chem Int Ed Engl 1996. [DOI: 10.1002/ange.19961081204] [Citation(s) in RCA: 70] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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139
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Maillet JB, Boutin A, Fuchs AH. Numerical evidence of an embryonic orientational phase transition in small nitrogen clusters. PHYSICAL REVIEW LETTERS 1996; 76:4336-4339. [PMID: 10061264 DOI: 10.1103/physrevlett.76.4336] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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140
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Wales DJ. Structure, Dynamics, and Thermodynamics of Clusters: Tales from Topographic Potential Surfaces. Science 1996. [DOI: 10.1126/science.271.5251.925] [Citation(s) in RCA: 126] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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141
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Ball KD, Berry RS, Kunz RE, Li FY, Proykova A, Wales DJ. From Topographies to Dynamics on Multidimensional Potential Energy Surfaces of Atomic Clusters. Science 1996. [DOI: 10.1126/science.271.5251.963] [Citation(s) in RCA: 150] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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142
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143
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Doye JPK, Wales DJ, Berry RS. The effect of the range of the potential on the structures of clusters. J Chem Phys 1995. [DOI: 10.1063/1.470729] [Citation(s) in RCA: 336] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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144
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Wales DJ, Doye JPK. Coexistence and phase separation in clusters: From the small to the not‐so‐small regime. J Chem Phys 1995. [DOI: 10.1063/1.470494] [Citation(s) in RCA: 77] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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145
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Doye JPK, Wales DJ. An order parameter approach to coexistence in atomic clusters. J Chem Phys 1995. [DOI: 10.1063/1.468786] [Citation(s) in RCA: 68] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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146
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Doye JPK, Wales DJ. Calculation of thermodynamic properties of small Lennard‐Jones clusters incorporating anharmonicity. J Chem Phys 1995. [DOI: 10.1063/1.468785] [Citation(s) in RCA: 135] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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147
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Nayak SK, Ramaswamy R, Chakravarty C. 1/f spectra in finite atomic clusters. PHYSICAL REVIEW LETTERS 1995; 74:4181-4184. [PMID: 10058436 DOI: 10.1103/physrevlett.74.4181] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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148
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Nayak SK, Ramaswamy R, Chakravarty C. Maximal Lyapunov exponent in small atomic clusters. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1995; 51:3376-3380. [PMID: 9963018 DOI: 10.1103/physreve.51.3376] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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149
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Serra S, Sanguinetti S, Colombo L. Solid‐to‐liquid phase change and fragmentation in C60. J Chem Phys 1995. [DOI: 10.1063/1.468736] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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150
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Chakravarty C. Melting of neon clusters: Path integral Monte Carlo simulations. J Chem Phys 1995. [DOI: 10.1063/1.469163] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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