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For: Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdés-López O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC. An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. Plant Cell 2014;26:4584-601. [PMID: 25465409 PMCID: PMC4311202 DOI: 10.1105/tpc.114.131847] [Citation(s) in RCA: 73] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2014] [Revised: 11/01/2014] [Accepted: 11/13/2014] [Indexed: 05/18/2023]
Number Cited by Other Article(s)
101
Paim Pinto DL, Brancadoro L, Dal Santo S, De Lorenzis G, Pezzotti M, Meyers BC, Pè ME, Mica E. The Influence of Genotype and Environment on Small RNA Profiles in Grapevine Berry. FRONTIERS IN PLANT SCIENCE 2016;7:1459. [PMID: 27761135 PMCID: PMC5050227 DOI: 10.3389/fpls.2016.01459] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2016] [Accepted: 09/13/2016] [Indexed: 05/21/2023]
102
Curtin SJ, Michno JM, Campbell BW, Gil-Humanes J, Mathioni SM, Hammond R, Gutierrez-Gonzalez JJ, Donohue RC, Kantar MB, Eamens AL, Meyers BC, Voytas DF, Stupar RM. MicroRNA Maturation and MicroRNA Target Gene Expression Regulation Are Severely Disrupted in Soybean dicer-like1 Double Mutants. G3 (BETHESDA, MD.) 2015;6:423-33. [PMID: 26681515 PMCID: PMC4751560 DOI: 10.1534/g3.115.022137] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2015] [Accepted: 12/07/2015] [Indexed: 01/06/2023]
103
The expanding world of small RNAs in plants. Nat Rev Mol Cell Biol 2015;16:727-41. [PMID: 26530390 DOI: 10.1038/nrm4085] [Citation(s) in RCA: 599] [Impact Index Per Article: 66.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
104
Xia R, Xu J, Arikit S, Meyers BC. Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants. Mol Biol Evol 2015;32:2905-18. [PMID: 26318183 PMCID: PMC4651229 DOI: 10.1093/molbev/msv164] [Citation(s) in RCA: 91] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
105
Xia R, Ye S, Liu Z, Meyers BC, Liu Z. Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry. PLANT PHYSIOLOGY 2015;169:594-610. [PMID: 26143249 PMCID: PMC4577376 DOI: 10.1104/pp.15.00253] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2015] [Accepted: 07/01/2015] [Indexed: 05/18/2023]
106
Fei Q, Li P, Teng C, Meyers BC. Secondary siRNAs from Medicago NB-LRRs modulated via miRNA-target interactions and their abundances. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2015;83:451-65. [PMID: 26042408 DOI: 10.1111/tpj.12900] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2015] [Revised: 05/23/2015] [Accepted: 05/28/2015] [Indexed: 05/04/2023]
107
Formey D, Iñiguez LP, Peláez P, Li YF, Sunkar R, Sánchez F, Reyes JL, Hernández G. Genome-wide identification of the Phaseolus vulgaris sRNAome using small RNA and degradome sequencing. BMC Genomics 2015;16:423. [PMID: 26059339 PMCID: PMC4462009 DOI: 10.1186/s12864-015-1639-5] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2015] [Accepted: 05/18/2015] [Indexed: 12/21/2022]  Open
108
Belli Kullan J, Lopes Paim Pinto D, Bertolini E, Fasoli M, Zenoni S, Tornielli GB, Pezzotti M, Meyers BC, Farina L, Pè ME, Mica E. miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing. BMC Genomics 2015;16:393. [PMID: 25981679 PMCID: PMC4434875 DOI: 10.1186/s12864-015-1610-5] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Accepted: 05/01/2015] [Indexed: 11/10/2022]  Open
109
Zheng Y, Wang Y, Wu J, Ding B, Fei Z. A dynamic evolutionary and functional landscape of plant phased small interfering RNAs. BMC Biol 2015;13:32. [PMID: 25980406 PMCID: PMC4457045 DOI: 10.1186/s12915-015-0142-4] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2015] [Accepted: 05/07/2015] [Indexed: 11/10/2022]  Open
110
Zhao M, Cai C, Zhai J, Lin F, Li L, Shreve J, Thimmapuram J, Hughes TJ, Meyers BC, Ma J. Coordination of MicroRNAs, PhasiRNAs, and NB-LRR Genes in Response to a Plant Pathogen: Insights from Analyses of a Set of Soybean Rps Gene Near-Isogenic Lines. THE PLANT GENOME 2015;8:eplantgenome2014.09.0044. [PMID: 33228285 DOI: 10.3835/plantgenome2014.09.0044] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2014] [Accepted: 11/14/2014] [Indexed: 06/11/2023]
111
Zhao M, Meyers BC, Cai C, Xu W, Ma J. Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean. THE PLANT CELL 2015;27:546-62. [PMID: 25747880 PMCID: PMC4558674 DOI: 10.1105/tpc.15.00048] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2015] [Revised: 02/07/2015] [Accepted: 02/18/2015] [Indexed: 05/04/2023]
112
Hofmann NR. A world beyond Arabidopsis: updates on small RNAs in plant development. THE PLANT CELL 2014;26:4564. [PMID: 25465406 PMCID: PMC4311220 DOI: 10.1105/tpc.114.134635] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
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