151
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Abstract
We present a subspace surface hopping strategy to deal with complex surface crossings in nonadiabatic dynamics. By focusing on only important adiabatic states, we make subspace crossing correction (SCC) in the framework of the standard fewest switches surface hopping (FSSH) and the global flux surface hopping (GFSH). The resulting SCC-FSSH and SCC-GFSH approaches show much better performance than the counterparts using all adiabatic states for surface hopping. As demonstrated in a series of Holstein models with up to over 1000 molecular sites, both SCC-FSSH and SCC-GFSH show excellent size independence with a large time step size of 1 fs. Especially, SCC-GFSH does not refer to nonadiabatic couplings at all and gives a more proper description of superexchange, and thus, it is promising for realistic applications with complex potential energy surfaces.
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Affiliation(s)
- Jing Qiu
- Center for Chemistry of Novel & High-Performance Materials , and Department of Chemistry , Zhejiang University , Hangzhou 310027 , China
| | - Xin Bai
- Center for Chemistry of Novel & High-Performance Materials , and Department of Chemistry , Zhejiang University , Hangzhou 310027 , China
| | - Linjun Wang
- Center for Chemistry of Novel & High-Performance Materials , and Department of Chemistry , Zhejiang University , Hangzhou 310027 , China
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152
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Yang Y, Li D, Li C, Liu Y, Jiang K. Asymmetric substitution changes the UV-induced nonradiative decay pathway and the spectra behaviors of β-diketones. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 207:209-215. [PMID: 30240982 DOI: 10.1016/j.saa.2018.09.026] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 09/13/2018] [Accepted: 09/14/2018] [Indexed: 06/08/2023]
Abstract
Asymmetric substitution has not been termed as an essential factor in studying photo-induced ultrafast dynamics of molecular system. Asymmetric 4-hydroxybut-3-en-2-one (HEO), together with symmetric malonaldehyde (MA) and acetylacetone (AA), have been provided as target sample to study the nonradiative decay (ND) processes of β-diketones. An effective ND pathway of the three molecules is presented that their excited second (S2) states transfer to first (S1) state by nonadiabatic surface hopping, and then transfer to triplet (T1) state by crossing minimum energy crossing point (MECP), after which decay to ground (S0) state through MECP. More importantly, the asymmetric substitution of HEO induces the proton transfer in the S1 state and generates a proton-transferred conformer with lowest energy, which does not occur for MA and AA. This change exploits a new ND pathway that the S1 state decays to the proton transferred T1 state and then undergoes reverse proton transfer to S0 state through the MECPs between the three states. The two pathways of HEO give detailed energy and geometric information on surface hopping of S2/S1 and MECPs of S1/T1/S0, and interpret the reason of the ND pathway while not spectra emission. This result is significantly different from the previous reported ND pathway of photoisomerization or conical intersection between different states. This work shows that asymmetric substitution changes the molecular structure and then changes their spectra behaviors.
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Affiliation(s)
- Yonggang Yang
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China
| | - Donglin Li
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China
| | - Chaozheng Li
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China
| | - Yufang Liu
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China.
| | - Kai Jiang
- School of Environment, Henan Normal University, Xinxiang 453007, China
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153
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Wang J, Durbeej B. Molecular motors with high quantum efficiency and visible-light responsiveness: Meeting two challenges in one design. COMPUT THEOR CHEM 2019. [DOI: 10.1016/j.comptc.2018.12.012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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154
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Ranković M, Chalabala J, Zawadzki M, Kočišek J, Slavíček P, Fedor J. Dissociative ionization dynamics of dielectric gas C3F7CN. Phys Chem Chem Phys 2019; 21:16451-16458. [PMID: 31312828 DOI: 10.1039/c9cp02188d] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Fluoronitrile C3F7CN is a promising candidate for the replacement of SF6 dielectric gas in high-voltage insulation.
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Affiliation(s)
- M. Ranković
- J. Heyrovský Institute of Physical Chemistry
- Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| | - J. Chalabala
- Department of Physical Chemistry
- University of Chemistry and Technology
- 16628 Prague
- Czech Republic
| | - M. Zawadzki
- J. Heyrovský Institute of Physical Chemistry
- Czech Academy of Sciences
- 18223 Prague
- Czech Republic
- Department of Atomic, Molecular, and Optical Physics
| | - J. Kočišek
- J. Heyrovský Institute of Physical Chemistry
- Czech Academy of Sciences
- 18223 Prague
- Czech Republic
| | - P. Slavíček
- J. Heyrovský Institute of Physical Chemistry
- Czech Academy of Sciences
- 18223 Prague
- Czech Republic
- Department of Physical Chemistry
| | - J. Fedor
- J. Heyrovský Institute of Physical Chemistry
- Czech Academy of Sciences
- 18223 Prague
- Czech Republic
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155
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Plasser F, Gómez S, Menger MFSJ, Mai S, González L. Highly efficient surface hopping dynamics using a linear vibronic coupling model. Phys Chem Chem Phys 2018; 21:57-69. [PMID: 30306987 DOI: 10.1039/c8cp05662e] [Citation(s) in RCA: 72] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
We report an implementation of the linear vibronic coupling (LVC) model within the surface hopping dynamics approach and present utilities for parameterizing this model in a blackbox fashion. This results in an extremely efficient method to obtain qualitative and even semi-quantitative information about the photodynamical behavior of a molecule, and provides a new route toward benchmarking the results of surface hopping computations. The merits and applicability of the method are demonstrated in a number of applications. First, the method is applied to the SO2 molecule showing that it is possible to compute its absorption spectrum beyond the Condon approximation, and that all the main features and timescales of previous on-the-fly dynamics simulations of intersystem crossing are reproduced while reducing the computational effort by three orders of magnitude. The dynamics results are benchmarked against exact wavepacket propagations on the same LVC potentials and against a variation of the electronic structure level. Four additional test cases are presented to exemplify the broader applicability of the model. The photodynamics of the isomeric adenine and 2-aminopurine molecules are studied and it is shown that the LVC model correctly predicts ultrafast decay in the former and an extended excited-state lifetime in the latter. Futhermore, the method correctly predicts ultrafast intersystem crossing in the modified nucleobase 2-thiocytosine and its absence in 5-azacytosine while it fails to describe the ultrafast internal conversion to the ground state in the latter.
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Affiliation(s)
- Felix Plasser
- Department of Chemistry, Loughborough University, Loughborough, LE11 3TU, UK.
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156
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Hilal R, Aziz SG. Solvent-assisted excited state proton transfer and photoacidity of 2-hydroxypyridine. A nonadiabatic dynamics study. MOLECULAR SIMULATION 2018. [DOI: 10.1080/08927022.2018.1547821] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Rifaat Hilal
- Chemistry Department, Faculty of Science, Cairo University, Giza, Egypt
| | - Saadullah G. Aziz
- Chemistry Department, Faculty of Science, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia
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157
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Sousa C, Alías M, Domingo A, de Graaf C. Deactivation of Excited States in Transition-Metal Complexes: Insight from Computational Chemistry. Chemistry 2018; 25:1152-1164. [DOI: 10.1002/chem.201801990] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Indexed: 11/11/2022]
Affiliation(s)
- Carmen Sousa
- Departament de Química Física and Institut de Química, Teòrica i Computacional; Universitat de Barcelona; C/ Martí i Franquès 1 08028 Barcelona Catalunya Spain
| | - Marc Alías
- Departament de Química Física i Inorgànica; Universitat Rovira i Virgili; Marcel⋅lí Domingo 1 43007 Tarragona Catalunya Spain
| | - Alex Domingo
- Departament de Química Física i Inorgànica; Universitat Rovira i Virgili; Marcel⋅lí Domingo 1 43007 Tarragona Catalunya Spain
| | - Coen de Graaf
- Departament de Química Física i Inorgànica; Universitat Rovira i Virgili; Marcel⋅lí Domingo 1 43007 Tarragona Catalunya Spain
- ICREA; Pg. Lluis Companys 23 08010 Barcelona Catalunya Spain
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158
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Fregoni J, Granucci G, Coccia E, Persico M, Corni S. Manipulating azobenzene photoisomerization through strong light-molecule coupling. Nat Commun 2018; 9:4688. [PMID: 30409994 PMCID: PMC6224570 DOI: 10.1038/s41467-018-06971-y] [Citation(s) in RCA: 79] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2018] [Accepted: 10/04/2018] [Indexed: 11/09/2022] Open
Abstract
The formation of hybrid light–molecule states (polaritons) offers a new strategy to manipulate the photochemistry of molecules. To fully exploit its potential, one needs to build a toolbox of polaritonic phenomenologies that supplement those of standard photochemistry. By means of a state-of-the-art computational photochemistry approach extended to the strong-coupling regime, here we disclose various mechanisms peculiar of polaritonic chemistry: coherent population oscillations between polaritons, quenching by trapping in dead-end polaritonic states and the alteration of the photochemical reaction pathway and quantum yields. We focus on azobenzene photoisomerization, that encompasses the essential features of complex photochemical reactions such as the presence of conical intersections and reaction coordinates involving multiple internal modes. In the strong coupling regime, a polaritonic conical intersection arises and we characterize its role in the photochemical process. Our chemically detailed simulations provide a framework to rationalize how the strong coupling impacts the photochemistry of realistic molecules. Manipulation of the photochemistry of molecules is traditionally achieved through synthetic chemical modifications. Here the authors use computational photochemistry to show how to control azobenzene photoisomerization through hybrid light–molecule states (polaritons).
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Affiliation(s)
- J Fregoni
- Dipartimento di Scienze Fisiche, Informatiche e Matematiche, University of Modena and Reggio Emilia, I-41125, Modena, Italy.,Istituto Nanoscienze, Consiglio Nazionale delle Ricerche CNR-NANO, I-41125, Modena, Italy
| | - G Granucci
- Dipartimento di Chimica e Chimica Industriale, University of Pisa, I-56124, Pisa, Italy.
| | - E Coccia
- Dipartimento di Scienze Chimiche, University of Padova, I-35131, Padova, Italy
| | - M Persico
- Dipartimento di Chimica e Chimica Industriale, University of Pisa, I-56124, Pisa, Italy
| | - S Corni
- Istituto Nanoscienze, Consiglio Nazionale delle Ricerche CNR-NANO, I-41125, Modena, Italy. .,Dipartimento di Scienze Chimiche, University of Padova, I-35131, Padova, Italy.
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159
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Menger MFSJ, Plasser F, Mennucci B, González L. Surface Hopping within an Exciton Picture. An Electrostatic Embedding Scheme. J Chem Theory Comput 2018; 14:6139-6148. [PMID: 30299941 DOI: 10.1021/acs.jctc.8b00763] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report the development and the implementation of an exciton approach that allows ab initio nonadiabatic dynamics simulations of electronic excitation energy transfer in multichromophoric systems. For the dynamics, a trajectory-based strategy is used within the surface hopping formulation. The approach features a consistent hybrid formulation that allows the construction of potential energy surfaces and gradients by combining quantum mechanics and molecular mechanics within an electrostatic embedding scheme. As an application, the study of a molecular dyad consisting of a covalently bound BODIPY moiety and a tetrathiophene group is presented using time-dependent density functional theory (TDDFT). The results obtained with the exciton model are compared to previously performed full TDDFT dynamics of the same system. Our results show excellent agreement with the full TDDFT results, indicating that the couplings that lead to excitation energy transfer (EET) are dominated by Coulomb interaction terms and that charge-transfer states are not necessary to properly describe the nonadiabatic dynamics of the system. The exciton model also reveals ultrafast coherent oscillations of the excitation between the two units in the dyad, which occur during the first 50 fs.
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Affiliation(s)
- Maximilian F S J Menger
- Institute for Theoretical Chemistry, Faculty of Chemistry , University of Vienna , Währingerstrasse 17 , 1090 Vienna , Austria.,Dipartimento di Chimica e Chimica Industriale , University of Pisa , Via G. Moruzzi 13 , 56124 Pisa , Italy
| | - Felix Plasser
- Institute for Theoretical Chemistry, Faculty of Chemistry , University of Vienna , Währingerstrasse 17 , 1090 Vienna , Austria.,Department of Chemistry , Loughborough University , Loughborough LE11 3TU , U.K
| | - Benedetta Mennucci
- Dipartimento di Chimica e Chimica Industriale , University of Pisa , Via G. Moruzzi 13 , 56124 Pisa , Italy
| | - Leticia González
- Institute for Theoretical Chemistry, Faculty of Chemistry , University of Vienna , Währingerstrasse 17 , 1090 Vienna , Austria
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160
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Tuna D, Spörkel L, Barbatti M, Thiel W. Nonadiabatic dynamics simulations of photoexcited urocanic acid. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.09.036] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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161
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Mai S, Marquetand P, González L. Nonadiabatic dynamics: The SHARC approach. WILEY INTERDISCIPLINARY REVIEWS. COMPUTATIONAL MOLECULAR SCIENCE 2018; 8:e1370. [PMID: 30450129 PMCID: PMC6220962 DOI: 10.1002/wcms.1370] [Citation(s) in RCA: 224] [Impact Index Per Article: 37.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Revised: 04/05/2018] [Accepted: 04/06/2018] [Indexed: 12/12/2022]
Abstract
We review the Surface Hopping including ARbitrary Couplings (SHARC) approach for excited-state nonadiabatic dynamics simulations. As a generalization of the popular surface hopping method, SHARC allows simulating the full-dimensional dynamics of molecules including any type of coupling terms beyond nonadiabatic couplings. Examples of these arbitrary couplings include spin-orbit couplings or dipole moment-laser field couplings, such that SHARC can describe ultrafast internal conversion, intersystem crossing, and radiative processes. The key step of the SHARC approach consists of a diagonalization of the Hamiltonian including these couplings, such that the nuclear dynamics is carried out on potential energy surfaces including the effects of the couplings-this is critical in any applications considering, for example, transition metal complexes or strong laser fields. We also give an overview over the new SHARC2.0 dynamics software package, released under the GNU General Public License, which implements the SHARC approach and several analysis tools. The review closes with a brief survey of applications where SHARC was employed to study the nonadiabatic dynamics of a wide range of molecular systems. This article is categorized under: Theoretical and Physical Chemistry > Reaction Dynamics and KineticsSoftware > Simulation MethodsSoftware > Quantum Chemistry.
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Affiliation(s)
- Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry University of Vienna Vienna Austria
| | - Philipp Marquetand
- Institute of Theoretical Chemistry, Faculty of Chemistry University of Vienna Vienna Austria
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry University of Vienna Vienna Austria
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162
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Durbeej B, Wang J, Oruganti B. Molecular Photoswitching Aided by Excited-State Aromaticity. Chempluschem 2018; 83:958-967. [PMID: 31950720 DOI: 10.1002/cplu.201800307] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2018] [Indexed: 12/18/2022]
Abstract
Central to the development of optoelectronic devices is the availability of efficient synthetic molecular photoswitches, the design of which is an arena where the evolving concept of excited-state aromaticity (ESA) is yet to make a big impact. The aim of this minireview is to illustrate the potential of this concept to become a key tool for the future design of photoswitches. The paper starts with a discussion of challenges facing the use of photoswitches for applications and continues with an account of how the ESA concept has progressed since its inception. Then, following some brief remarks on computational modeling of photoswitches and ESA, the paper describes two different approaches to improve the quantum yields and response times of switches driven by E/Z photoisomerization or photoinduced H-atom/proton transfer reactions through simple ESA considerations. It is our hope that these approaches, verified by quantum chemical calculations and molecular dynamics simulations, will help stimulate the application of the ESA concept as a general tool for designing more efficient photoswitches and other functional molecules used in optoelectronic devices.
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Affiliation(s)
- Bo Durbeej
- Division of Theoretical Chemistry, IFM, Linköping University, SE-581 83, Linköping, Sweden
| | - Jun Wang
- Division of Theoretical Chemistry, IFM, Linköping University, SE-581 83, Linköping, Sweden
| | - Baswanth Oruganti
- Division of Theoretical Chemistry, IFM, Linköping University, SE-581 83, Linköping, Sweden.,Department of Chemistry, GITAM Institute of Science (GIS), GITAM University, Visakhapatnam-, 530045, Andhra Pradesh, India
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163
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Qiu J, Bai X, Wang L. Crossing Classified and Corrected Fewest Switches Surface Hopping. J Phys Chem Lett 2018; 9:4319-4325. [PMID: 30011207 DOI: 10.1021/acs.jpclett.8b01902] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
In the traditional fewest switches surface hopping (FSSH), trivial crossings between uncoupled or weakly coupled states have highly peaked nonadiabatic couplings and thus are difficult to deal with in the preferred, adiabatic representation. Here, we classify surface crossings into four general types and propose a parameter-free crossing corrected FSSH (CC-FSSH) algorithm, which could treat multiple trivial crossings within a time interval. As examples, Holstein Hamiltonians with different parameters are adopted to mimic electron dynamics in tens to hundreds of molecules, which suffer from severe trivial crossing problems. Using existed surface hopping approaches as references, we show that CC-FSSH exhibits significantly fast time interval convergence and weak system size dependence. In all cases, a reliable description is achieved with a large time interval of 1 fs. With a simple formalism and the ability to describe complex surface crossings, CC-FSSH could potentially simulate general nonadiabatic dynamics in nanoscale materials with a high efficiency.
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Affiliation(s)
- Jing Qiu
- Department of Chemistry , Zhejiang University , Hangzhou 310027 , China
| | - Xin Bai
- Department of Chemistry , Zhejiang University , Hangzhou 310027 , China
| | - Linjun Wang
- Department of Chemistry , Zhejiang University , Hangzhou 310027 , China
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164
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Wang J, Durbeej B. Toward Fast and Efficient Visible-Light-Driven Molecular Motors: A Minimal Design. ChemistryOpen 2018; 7:583-589. [PMID: 30083493 PMCID: PMC6070775 DOI: 10.1002/open.201800089] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Indexed: 12/16/2022] Open
Abstract
A key goal in the development of light-driven rotary molecular motors is to facilitate their usage in biology and medicine by shifting the required irradiation wavelengths from the UV regime to the nondestructive visible regime. Although some progress has been made toward this goal, most available visible-light-driven motors either have relatively low quantum yields or require that thermal steps follow the photoisomerizations that underlie the rotary motion. Here, a minimal design for visible-light-driven motors without these drawbacks is presented and evaluated on the basis of state-of-the-art quantum chemical calculations and molecular dynamics simulations. The design, featuring dihydropyridinium and cyclohexenylidene motifs and comprising only five conjugated double bonds, is found to produce a full 360° rotation through fast photoisomerizations (excited-state lifetimes of ≈170-250 fs) powered by photons with energies well below 3 eV.
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Affiliation(s)
- Jun Wang
- Division of Theoretical Chemistry, IFMLinköping UniversitySE-581 83LinköpingSweden
| | - Bo Durbeej
- Division of Theoretical Chemistry, IFMLinköping UniversitySE-581 83LinköpingSweden
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165
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Liu J, Koslowski A, Thiel W. Analytic gradient and derivative couplings for the spin-flip extended configuration interaction singles method: Theory, implementation, and application to proton transfer. J Chem Phys 2018; 148:244108. [DOI: 10.1063/1.5037081] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Affiliation(s)
- Jie Liu
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Axel Koslowski
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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166
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de Souza B, Neese F, Izsák R. On the theoretical prediction of fluorescence rates from first principles using the path integral approach. J Chem Phys 2018; 148:034104. [PMID: 29352790 DOI: 10.1063/1.5010895] [Citation(s) in RCA: 95] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this work, we present and implement the theory for calculating fluorescence rates and absorption and emission spectra from first principles, using the path integral approach. We discuss some approximations and modifications to the full set of equations that improve speed and numerical stability for the case when a large number of modes are considered. New methods to approximate the excited state potential energy surface are also discussed and it is shown that for most purposes, these can be used instead of a full geometry optimization to obtain the rates mentioned above. A few examples are presented and the overall performance of the method is discussed. It is shown that the rates and spectra computed in this way are well within the acceptable range of errors and can be used in future predictions, particularly for screening purposes, with the only limitation on size being that of the electronic structure calculation itself.
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Affiliation(s)
- Bernardo de Souza
- Departamento de Química, Universidade Federal de Santa Catarina, Campus Trindade, CP 476, 88040-900 Florianópolis, Brazil
| | - Frank Neese
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Róbert Izsák
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany
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167
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Mai S, Plasser F, Pabst M, Neese F, Köhn A, González L. Surface hopping dynamics including intersystem crossing using the algebraic diagrammatic construction method. J Chem Phys 2018; 147:184109. [PMID: 29141436 DOI: 10.1063/1.4999687] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
We report an implementation for employing the algebraic diagrammatic construction to second order [ADC(2)] ab initio electronic structure level of theory in nonadiabatic dynamics simulations in the framework of the SHARC (surface hopping including arbitrary couplings) dynamics method. The implementation is intended to enable computationally efficient, reliable, and easy-to-use nonadiabatic dynamics simulations of intersystem crossing in organic molecules. The methodology is evaluated for the 2-thiouracil molecule. It is shown that ADC(2) yields reliable excited-state energies, wave functions, and spin-orbit coupling terms for this molecule. Dynamics simulations are compared to previously reported results using high-level multi-state complete active space perturbation theory, showing favorable agreement.
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Affiliation(s)
- Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
| | - Felix Plasser
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
| | - Mathias Pabst
- Institute of Physical Chemistry, University of Mainz, Duesbergweg 10, D-55099 Mainz, Germany
| | - Frank Neese
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Andreas Köhn
- Institute of Physical Chemistry, University of Mainz, Duesbergweg 10, D-55099 Mainz, Germany
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
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168
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Bonnet L. Semiclassical initial value theory of rotationally inelastic scattering: Some remarks on the phase index in the interaction picture. J Chem Phys 2018; 148:194104. [PMID: 30307190 DOI: 10.1063/1.5024785] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
This paper deals with the treatment of quantum interferences in the semiclassical initial value theory of rotationally inelastic scattering in the interaction picture. Like many semiclassical methods, the previous approach involves a phase index related to sign changes of a Jacobian whose square root is involved in the calculations. It is shown that replacing the original phase index by a new one extends the range of applicability of the theory. The resulting predictions are in close agreement with exact quantum scattering results for a model of atom-rigid diatom collision involving strong interferences. The developments are performed within the framework of the planar rotor model, but are readily applicable to three-dimensional collisions.
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Affiliation(s)
- L Bonnet
- CNRS, ISM, UMR 5255, F-33400 Talence, France and Université de Bordeaux, ISM, UMR 5255, F-33400 Talence, France
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169
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Crespo-Otero R, Barbatti M. Recent Advances and Perspectives on Nonadiabatic Mixed Quantum–Classical Dynamics. Chem Rev 2018; 118:7026-7068. [DOI: 10.1021/acs.chemrev.7b00577] [Citation(s) in RCA: 301] [Impact Index Per Article: 50.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rachel Crespo-Otero
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom
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170
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Hirshberg B, Gerber RB, Krylov AI. Autocorrelation of electronic wave-functions: a new approach for describing the evolution of electronic structure in the course of dynamics. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1464675] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Barak Hirshberg
- Fritz Haber Center for Molecular Dynamics, Institute of Chemistry , Jerusalem, Israel
| | - R. Benny Gerber
- Fritz Haber Center for Molecular Dynamics, Institute of Chemistry , Jerusalem, Israel
- Department of Chemistry, University of California , Irvine, CA, USA
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California , Los Angeles, CA, USA
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171
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Liu J, Thiel W. An efficient implementation of semiempirical quantum-chemical orthogonalization-corrected methods for excited-state dynamics. J Chem Phys 2018; 148:154103. [DOI: 10.1063/1.5022466] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jie Liu
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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172
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Zobel JP, Nogueira JJ, González L. Mechanism of Ultrafast Intersystem Crossing in 2-Nitronaphthalene. Chemistry 2018; 24:5379-5387. [PMID: 29377370 PMCID: PMC5947663 DOI: 10.1002/chem.201705854] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2017] [Indexed: 01/10/2023]
Abstract
Nitronaphthalene derivatives efficiently populate their electronically excited triplet states upon photoexcitation through ultrafast intersystem crossing (ISC). Despite having been studied extensively by time-resolved spectroscopy, the reasons behind their ultrafast ISC remain unknown. Herein, we present the first ab initio nonadiabatic molecular dynamics study of a nitronaphthalene derivative, 2-nitronaphthalene, including singlet and triplet states. We find that there are two distinct ISC reaction pathways involving different electronic states at distinct nuclear configurations. The high ISC efficiency is explained by the very small electronic and nuclear alterations that the chromophore needs to undergo during the singlet-triplet transition in the dominating ISC pathway after initial dynamics in the singlet manifold. The insights gained in this work are expected to shed new light on the photochemistry of other nitro polycyclic aromatic hydrocarbons that exhibit ultrafast intersystem crossing.
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Affiliation(s)
- J. Patrick Zobel
- Institute of Theoretical Chemistry, Faculty of ChemistryUniversity of ViennaWähringer Straße 171090ViennaAustria
| | - Juan J. Nogueira
- Institute of Theoretical Chemistry, Faculty of ChemistryUniversity of ViennaWähringer Straße 171090ViennaAustria
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of ChemistryUniversity of ViennaWähringer Straße 171090ViennaAustria
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173
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Chalabala J, Uhlig F, Slavíček P. Assessment of Real-Time Time-Dependent Density Functional Theory (RT-TDDFT) in Radiation Chemistry: Ionized Water Dimer. J Phys Chem A 2018. [PMID: 29513531 DOI: 10.1021/acs.jpca.8b01259] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ionization in the condensed phase and molecular clusters leads to a complicated chain of processes with coupled electron-nuclear dynamics. It is difficult to describe such dynamics with conventional nonadiabatic molecular dynamics schemes since the number of states swiftly increases as the molecular system grows. It is therefore attractive to use a direct electron and nuclear propagation such as the real-time time-dependent density functional theory (RT-TDDFT). Here we report a RT-TDDFT benchmark study on simulations of singly and doubly ionized states of a water monomer and dimer as a prototype for more complex processes in a condensed phase. We employed the RT-TDDFT based Ehrenfest molecular dynamics with a generalized gradient approximate (GGA) functional and compared it with wave-function-based surface hopping (SH) simulations. We found that the initial dynamics of a singly HOMO ionized water dimer is similar for both the RT-TDDFT/GGA and the SH simulations but leads to completely different reaction channels on a longer time scale. This failure is attributed to the self-interaction error in the GGA functionals and it can be avoided by using hybrid functionals with large fraction of exact exchange (represented here by the BHandHLYP functional). The simulations of doubly ionized states are reasonably described already at the GGA level. This suggests that the RT-TDDFT/GGA method could describe processes following the autoionization processes such as Auger emission, while its applicability to more complex processes such as intermolecular Coulombic decay remains limited.
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Affiliation(s)
- Jan Chalabala
- Department of Physical Chemistry , University of Chemistry and Technology , Technická 5 , 16628 Prague , Czech Republic
| | - Frank Uhlig
- Department of Physical Chemistry , University of Chemistry and Technology , Technická 5 , 16628 Prague , Czech Republic.,Institute for Computational Physics , University of Stuttgart , Allmandring 3 , 70569 Stuttgart , Germany
| | - Petr Slavíček
- Department of Physical Chemistry , University of Chemistry and Technology , Technická 5 , 16628 Prague , Czech Republic.,Jaroslav Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic , Dolejškova 3 , 18200 Prague , Czech Republic
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174
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Li Y, Gong Q, Yue L, Wang W, Liu F. Photochemistry of the Simplest Criegee Intermediate, CH 2OO: Photoisomerization Channel toward Dioxirane Revealed by CASPT2 Calculations and Trajectory Surface-Hopping Dynamics. J Phys Chem Lett 2018; 9:978-981. [PMID: 29420035 DOI: 10.1021/acs.jpclett.8b00023] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The photochemistry of Criegee intermediates plays a significant role in atmospheric chemistry, but it is relatively less explored compared with their thermal reactions. Using multireference CASPT2 electronic structure calculations and CASSCF trajectory surface-hopping molecular dynamics, we have revealed a dark-state-involved A1A → X1A photoisomerization channel of the simple Criegee intermediate (CH2OO) that leads to a cyclic dioxirane. The excited molecules on the A1A state, which can have either originated from the B1A state via B1A → A1A internal conversion or formed by state-selective electronic excitation, is driven by the out-of-plane motion toward a perpendicular A/X1A minimal-energy crossing point (MECI) then radiationless decay to the ground state with an average time constant of ∼138 fs, finally forming dioxirane at ∼254 fs. The dynamics starting from the A1A state show that the quantum yield of photoisomerization from the simple Criegee intermediate to dioxirane is 38%. The finding of the A1A → X1A photoisomerization channel is expected to broaden the reactivity profile and deepen the understanding of the photochemistry of Criegee intermediates.
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Affiliation(s)
- Yazhen Li
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry & Chemical Engineering, Shaanxi Normal University , Xi'an, Shaanxi 710062, People's Republic of China
| | - Qianqian Gong
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry & Chemical Engineering, Shaanxi Normal University , Xi'an, Shaanxi 710062, People's Republic of China
| | - Ling Yue
- School of Sciences, Xi'an Jiaotong University , Xi'an, Shaanxi 710049, People's Republic of China
| | - Wenliang Wang
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry & Chemical Engineering, Shaanxi Normal University , Xi'an, Shaanxi 710062, People's Republic of China
| | - Fengyi Liu
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry & Chemical Engineering, Shaanxi Normal University , Xi'an, Shaanxi 710062, People's Republic of China
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175
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Mandal A, Yamijala SSRKC, Huo P. Quasi-Diabatic Representation for Nonadiabatic Dynamics Propagation. J Chem Theory Comput 2018; 14:1828-1840. [DOI: 10.1021/acs.jctc.7b01178] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Arkajit Mandal
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, United States
| | - Sharma SRKC Yamijala
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, United States
| | - Pengfei Huo
- Department of Chemistry, University of Rochester, 120 Trustee Road, Rochester, New York 14627, United States
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176
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Affiliation(s)
- Basile F. E. Curchod
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - Todd J. Martínez
- Department of Chemistry and PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
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177
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Lu J, Zhou Z. Accelerated sampling by infinite swapping of path integral molecular dynamics with surface hopping. J Chem Phys 2018; 148:064110. [DOI: 10.1063/1.5005024] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jianfeng Lu
- Departments of Mathematics, Physics, and Chemistry, Duke University, Durham, North Carolina 27708, USA
| | - Zhennan Zhou
- Beijing International Center for Mathematical Research, Peking University, Beijing 100871, People’s Republic of China
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178
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Lu S, Ma W, Jin G, Zeng Q, Feng X, Feng T, Liu H, Meng S, Redfern SAT, Yang B. A combined experimental and theoretical investigation of donor and acceptor interface in efficient aqueous-processed polymer/nanocrystal hybrid solar cells. Sci China Chem 2018. [DOI: 10.1007/s11426-017-9177-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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179
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Duan JX, Zhou Y, Xie ZZ, Sun TL, Cao J. Incorporating spin–orbit effects into surface hopping dynamics using the diagonal representation: a linear-response time-dependent density functional theory implementation with applications to 2-thiouracil. Phys Chem Chem Phys 2018; 20:15445-15454. [DOI: 10.1039/c8cp01852a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Evaluation of SOC values employs Casida's wave functions and the Breit–Pauli spin–orbit Hamiltonian with effective charge approximation.
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Affiliation(s)
- Jun-Xin Duan
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing
- Wuhan University of Technology
- Wuhan
- P. R. China
| | - Yun Zhou
- Guizhou Provincial Key Laboratory of Computational Nano-material Science
- Guizhou Synergetic Innovation Center of Scientific Big Data for Advanced Manufacturing Technology
- Guizhou Normal College
- Guiyang
- China
| | - Zhi-Zhong Xie
- Department of Chemistry
- School of Chemistry
- Chemical Engineering and Life Sciences
- Wuhan University of Technology
- Wuhan 430070
| | - Tao-Lei Sun
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing
- Wuhan University of Technology
- Wuhan
- P. R. China
| | - Jun Cao
- Guizhou Provincial Key Laboratory of Computational Nano-material Science
- Guizhou Synergetic Innovation Center of Scientific Big Data for Advanced Manufacturing Technology
- Guizhou Normal College
- Guiyang
- China
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180
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Hollas D, Šištík L, Hohenstein EG, Martínez TJ, Slavíček P. Nonadiabatic Ab Initio Molecular Dynamics with the Floating Occupation Molecular Orbital-Complete Active Space Configuration Interaction Method. J Chem Theory Comput 2017; 14:339-350. [DOI: 10.1021/acs.jctc.7b00958] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Daniel Hollas
- Department
of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague 6, Czech Republic
| | - Lukáš Šištík
- Department
of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague 6, Czech Republic
| | - Edward G. Hohenstein
- Department
of Chemistry and Biochemistry, The City College of New York, New York, New York 10031, United States
- PhD
Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
| | - Todd J. Martínez
- Department
of Chemistry and the PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Petr Slavíček
- Department
of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 16628 Prague 6, Czech Republic
- J. Heyrovský Institute of Physical Chemistry, Dolejškova 3, 18223 Prague 8, Czech Republic
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181
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Xie W, Domcke W. Accuracy of trajectory surface-hopping methods: Test for a two-dimensional model of the photodissociation of phenol. J Chem Phys 2017; 147:184114. [DOI: 10.1063/1.5006788] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Weiwei Xie
- Department of Chemistry, Technical University of Munich, Lichtenbergstr. 4, 85747 Garching, Germany
| | - Wolfgang Domcke
- Department of Chemistry, Technical University of Munich, Lichtenbergstr. 4, 85747 Garching, Germany
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182
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Gozem S, Luk HL, Schapiro I, Olivucci M. Theory and Simulation of the Ultrafast Double-Bond Isomerization of Biological Chromophores. Chem Rev 2017; 117:13502-13565. [DOI: 10.1021/acs.chemrev.7b00177] [Citation(s) in RCA: 175] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Samer Gozem
- Department
of Chemistry, Georgia State University, Atlanta, Georgia 30302, United States
| | - Hoi Ling Luk
- Chemistry
Department, Bowling Green State University, Overman Hall, Bowling Green, Ohio 43403, United States
| | - Igor Schapiro
- Fritz
Haber Center for Molecular Dynamics, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - Massimo Olivucci
- Chemistry
Department, Bowling Green State University, Overman Hall, Bowling Green, Ohio 43403, United States
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università di Siena, via A. Moro
2, 53100 Siena, Italy
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183
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Zheng Q, Saidi WA, Xie Y, Lan Z, Prezhdo OV, Petek H, Zhao J. Phonon-Assisted Ultrafast Charge Transfer at van der Waals Heterostructure Interface. NANO LETTERS 2017; 17:6435-6442. [PMID: 28914539 DOI: 10.1021/acs.nanolett.7b03429] [Citation(s) in RCA: 119] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The van der Waals (vdW) interfaces of two-dimensional (2D) semiconductor are central to new device concepts and emerging technologies in light-electricity transduction where the efficient charge separation is a key factor. Contrary to general expectation, efficient electron-hole separation can occur in vertically stacked transition-metal dichalcogenide heterostructure bilayers through ultrafast charge transfer between the neighboring layers despite their weak vdW bonding. In this report, we show by ab initio nonadiabatic molecular dynamics calculations, that instead of direct tunneling, the ultrafast interlayer hole transfer is strongly promoted by an adiabatic mechanism through phonon excitation occurring on 20 fs, which is in good agreement with the experiment. The atomic level picture of the phonon-assisted ultrafast mechanism revealed in our study is valuable both for the fundamental understanding of ultrafast charge carrier dynamics at vdW heterointerfaces as well as for the design of novel quasi-2D devices for optoelectronic and photovoltaic applications.
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Affiliation(s)
- Qijing Zheng
- ICQD/Hefei National Laboratory for Physical Sciences at Microscale, and Key Laboratory of Strongly-Coupled Quantum Matter Physics, Chinese Academy of Sciences, and Department of Physics, University of Science and Technology of China , Hefei, Anhui 230026, China
| | - Wissam A Saidi
- Department of Mechanical Engineering and Materials Science, University of Pittsburgh , Pittsburgh, Pennsylvania 15261, United States
| | - Yu Xie
- Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences , Qingdao, Shandong 266101, China
- University of Chinese Academy of Sciences , Beijing 100049, China
| | - Zhenggang Lan
- Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences , Qingdao, Shandong 266101, China
- University of Chinese Academy of Sciences , Beijing 100049, China
| | - Oleg V Prezhdo
- Departments of Chemistry, and Physics and Astronomy, University of Southern California , Los Angeles, California 90089, United States
| | - Hrvoje Petek
- Department of Physics and Astronomy, University of Pittsburgh , Pittsburgh Pennsylvania 15260, United States
| | - Jin Zhao
- ICQD/Hefei National Laboratory for Physical Sciences at Microscale, and Key Laboratory of Strongly-Coupled Quantum Matter Physics, Chinese Academy of Sciences, and Department of Physics, University of Science and Technology of China , Hefei, Anhui 230026, China
- Department of Physics and Astronomy, University of Pittsburgh , Pittsburgh Pennsylvania 15260, United States
- Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China , Hefei, Anhui 230026, China
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184
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Gastegger M, Behler J, Marquetand P. Machine learning molecular dynamics for the simulation of infrared spectra. Chem Sci 2017; 8:6924-6935. [PMID: 29147518 PMCID: PMC5636952 DOI: 10.1039/c7sc02267k] [Citation(s) in RCA: 255] [Impact Index Per Article: 36.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2017] [Accepted: 08/08/2017] [Indexed: 12/28/2022] Open
Abstract
Machine learning has emerged as an invaluable tool in many research areas. In the present work, we harness this power to predict highly accurate molecular infrared spectra with unprecedented computational efficiency. To account for vibrational anharmonic and dynamical effects - typically neglected by conventional quantum chemistry approaches - we base our machine learning strategy on ab initio molecular dynamics simulations. While these simulations are usually extremely time consuming even for small molecules, we overcome these limitations by leveraging the power of a variety of machine learning techniques, not only accelerating simulations by several orders of magnitude, but also greatly extending the size of systems that can be treated. To this end, we develop a molecular dipole moment model based on environment dependent neural network charges and combine it with the neural network potential approach of Behler and Parrinello. Contrary to the prevalent big data philosophy, we are able to obtain very accurate machine learning models for the prediction of infrared spectra based on only a few hundreds of electronic structure reference points. This is made possible through the use of molecular forces during neural network potential training and the introduction of a fully automated sampling scheme. We demonstrate the power of our machine learning approach by applying it to model the infrared spectra of a methanol molecule, n-alkanes containing up to 200 atoms and the protonated alanine tripeptide, which at the same time represents the first application of machine learning techniques to simulate the dynamics of a peptide. In all of these case studies we find an excellent agreement between the infrared spectra predicted via machine learning models and the respective theoretical and experimental spectra.
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Affiliation(s)
- Michael Gastegger
- University of Vienna , Faculty of Chemistry , Institute of Theoretical Chemistry , Währinger Str. 17 , 1090 Vienna , Austria . ; ; Tel: +43 1 4277 52764
| | - Jörg Behler
- Universität Göttingen , Institut für Physikalische Chemie , Theoretische Chemie , Tammannstr. 6 , 37077 Göttingen , Germany
| | - Philipp Marquetand
- University of Vienna , Faculty of Chemistry , Institute of Theoretical Chemistry , Währinger Str. 17 , 1090 Vienna , Austria . ; ; Tel: +43 1 4277 52764
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185
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Szabó P, Gustafsson M. A surface-hopping method for semiclassical calculations of cross sections for radiative association with electronic transitions. J Chem Phys 2017; 147:094308. [DOI: 10.1063/1.5000573] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Affiliation(s)
- Péter Szabó
- Applied Physics, Division of Materials Science, Department of Engineering Science and Mathematics, Luleå University of Technology, 97187 Luleå, Sweden
| | - Magnus Gustafsson
- Applied Physics, Division of Materials Science, Department of Engineering Science and Mathematics, Luleå University of Technology, 97187 Luleå, Sweden
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186
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Ghosh J, Banerjee S, Bhattacharya A. AIMS simulation study of ultrafast electronically nonadiabatic chemistry of methyl azide and UV–VIS spectroscopic study of azido-based energetic plasticizer bis(1,3-diazido prop-2-yl)malonate. Chem Phys 2017. [DOI: 10.1016/j.chemphys.2017.07.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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187
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Oruganti B, Wang J, Durbeej B. Excited-State Aromaticity Improves Molecular Motors: A Computational Analysis. Org Lett 2017; 19:4818-4821. [DOI: 10.1021/acs.orglett.7b02257] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Baswanth Oruganti
- Division of Theoretical Chemistry,
IFM, Linköping University, SE-581 83 Linköping, Sweden
| | - Jun Wang
- Division of Theoretical Chemistry,
IFM, Linköping University, SE-581 83 Linköping, Sweden
| | - Bo Durbeej
- Division of Theoretical Chemistry,
IFM, Linköping University, SE-581 83 Linköping, Sweden
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188
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Atkins AJ, Talotta F, Freitag L, Boggio-Pasqua M, González L. Assessing Excited State Energy Gaps with Time-Dependent Density Functional Theory on Ru(II) Complexes. J Chem Theory Comput 2017; 13:4123-4145. [DOI: 10.1021/acs.jctc.7b00379] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Andrew J. Atkins
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Francesco Talotta
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
- Laboratoire de
Chimie et Physique Quantiques (UMR5626), CNRS et Université
de Toulouse 3, 31062 Toulouse, France
| | - Leon Freitag
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Martial Boggio-Pasqua
- Laboratoire de
Chimie et Physique Quantiques (UMR5626), CNRS et Université
de Toulouse 3, 31062 Toulouse, France
| | - Leticia González
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
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189
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Bera A, Ghosh J, Bhattacharya A. Ab initio multiple spawning dynamics study of dimethylnitramine and dimethylnitramine-Fe complex to model their ultrafast nonadiabatic chemistry. J Chem Phys 2017; 147:044308. [DOI: 10.1063/1.4993947] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Affiliation(s)
- Anupam Bera
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Jayanta Ghosh
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Atanu Bhattacharya
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India
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190
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Affiliation(s)
- Jae Woo Park
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Toru Shiozaki
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
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191
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Nelson T, Fernandez-Alberti S, Roitberg AE, Tretiak S. Electronic Delocalization, Vibrational Dynamics, and Energy Transfer in Organic Chromophores. J Phys Chem Lett 2017; 8:3020-3031. [PMID: 28603994 DOI: 10.1021/acs.jpclett.7b00790] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The efficiency of materials developed for solar energy and technological applications depends on the interplay between molecular architecture and light-induced electronic energy redistribution. The spatial localization of electronic excitations is very sensitive to molecular distortions. Vibrational nuclear motions can couple to electronic dynamics driving changes in localization. The electronic energy transfer among multiple chromophores arises from several distinct mechanisms that can give rise to experimentally measured signals. Atomistic simulations of coupled electron-vibrational dynamics can help uncover the nuclear motions directing energy flow. Through careful analysis of excited state wave function evolution and a useful fragmenting of multichromophore systems, through-bond transport and exciton hopping (through-space) mechanisms can be distinguished. Such insights are crucial in the interpretation of fluorescence anisotropy measurements and can aid materials design. This Perspective highlights the interconnected vibrational and electronic motions at the foundation of nonadiabatic dynamics where nuclear motions, including torsional rotations and bond vibrations, drive electronic transitions.
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Affiliation(s)
- Tammie Nelson
- Theoretical Division, Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
| | | | - Adrian E Roitberg
- Department of Chemistry, University of Florida , Gainesville, Florida 32611, United States
| | - Sergei Tretiak
- Theoretical Division, Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
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192
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Wang L, Huan G, Momen R, Azizi A, Xu T, Kirk SR, Filatov M, Jenkins S. QTAIM and Stress Tensor Characterization of Intramolecular Interactions Along Dynamics Trajectories of a Light-Driven Rotary Molecular Motor. J Phys Chem A 2017; 121:4778-4792. [PMID: 28586210 DOI: 10.1021/acs.jpca.7b02347] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A quantum theory of atoms in molecules (QTAIM) and stress tensor analysis was applied to analyze intramolecular interactions influencing the photoisomerization dynamics of a light-driven rotary molecular motor. For selected nonadiabatic molecular dynamics trajectories characterized by markedly different S1 state lifetimes, the electron densities were obtained using the ensemble density functional theory method. The analysis revealed that torsional motion of the molecular motor blades from the Franck-Condon point to the S1 energy minimum and the S1/S0 conical intersection is controlled by two factors: greater numbers of intramolecular bonds before the hop-time and unusually strongly coupled bonds between the atoms of the rotor and the stator blades. This results in the effective stalling of the progress along the torsional path for an extended period of time. This finding suggests a possibility of chemical tuning of the speed of photoisomerization of molecular motors and related molecular switches by reshaping their molecular backbones to decrease or increase the degree of coupling and numbers of intramolecular bond critical points as revealed by the QTAIM/stress tensor analysis of the electron density. Additionally, the stress tensor scalar and vector analysis was found to provide new methods to follow the trajectories, and from this, new insight was gained into the behavior of the S1 state in the vicinity of the conical intersection.
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Affiliation(s)
- Lingling Wang
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province of MOE, College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha, Hunan 410081, China
| | - Guo Huan
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province of MOE, College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha, Hunan 410081, China
| | - Roya Momen
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province of MOE, College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha, Hunan 410081, China
| | - Alireza Azizi
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province of MOE, College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha, Hunan 410081, China
| | - Tianlv Xu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province of MOE, College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha, Hunan 410081, China
| | - Steven R Kirk
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province of MOE, College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha, Hunan 410081, China
| | - Michael Filatov
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province of MOE, College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha, Hunan 410081, China
| | - Samantha Jenkins
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource Fine-Processing and Advanced Materials of Hunan Province of MOE, College of Chemistry and Chemical Engineering, Hunan Normal University , Changsha, Hunan 410081, China
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193
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Arslancan S, Martínez-Fernández L, Corral I. Photophysics and Photochemistry of Canonical Nucleobases’ Thioanalogs: From Quantum Mechanical Studies to Time Resolved Experiments. Molecules 2017. [PMCID: PMC6152766 DOI: 10.3390/molecules22060998] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
Interest in understanding the photophysics and photochemistry of thiated nucleobases has been awakened because of their possible involvement in primordial RNA or their potential use as photosensitizers in medicinal chemistry. The interpretation of the photodynamics of these systems, conditioned by their intricate potential energy surfaces, requires the powerful interplay between experimental measurements and state of the art molecular simulations. In this review, we provide an overview on the photophysics of natural nucleobases’ thioanalogs, which covers the last 30 years and both experimental and computational contributions. For all the canonical nucleobase’s thioanalogs, we have compiled the main steady state absorption and emission features and their interpretation in terms of theoretical calculations. Then, we revise the main topographical features, including stationary points and interstate crossings, of their potential energy surfaces based on quantum mechanical calculations and we conclude, by combining the outcome of different spectroscopic techniques and molecular dynamics simulations, with the mechanism by which these nucleobase analogs populate their triplet excited states, which are at the origin of their photosensitizing properties.
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Affiliation(s)
- Serra Arslancan
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, Madrid 28049, Spain;
| | - Lara Martínez-Fernández
- Istituto Biostrutture e Bioimmagini-Consiglio Nazionale delle Ricerche, Via Mezzocannone 16, Napoli I-80134, Italy
- Correspondence: (L.M.-F.); (I.C.); Tel.: +34-91-497-8471 (I.C.)
| | - Inés Corral
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, Madrid 28049, Spain;
- Institute for Advanced Research in Chemical Sciences (IADCHEM), Universidad Autónoma de Madrid, Madrid 28049, Spain
- Correspondence: (L.M.-F.); (I.C.); Tel.: +34-91-497-8471 (I.C.)
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194
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Ehrmaier J, Karsili TNV, Sobolewski AL, Domcke W. Mechanism of Photocatalytic Water Splitting with Graphitic Carbon Nitride: Photochemistry of the Heptazine-Water Complex. J Phys Chem A 2017; 121:4754-4764. [PMID: 28592110 DOI: 10.1021/acs.jpca.7b04594] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Impressive progress has recently been achieved in photocatalytic hydrogen evolution with polymeric carbon nitride materials consisting of heptazine building blocks. However, the fundamental mechanistic principles of the catalytic cycle are as yet poorly understood. Here, we provide first-principles computational evidence that water splitting with heptazine-based materials can be understood as a molecular excited-state reaction taking place in hydrogen-bonded heptazine-water complexes. The oxidation of water occurs homolytically via an electron/proton transfer from water to heptazine, resulting in ground-state heptazinyl and OH radicals. It is shown that the excess hydrogen atom of the heptazinyl radical can be photodetached by a second photon, which regenerates the heptazine molecule. Alternatively to the photodetachment reaction, two heptazinyl radicals can recombine in a dark reaction to form H2, thereby regenerating two heptazine molecules. The proposed molecular photochemical reaction scheme within hydrogen-bonded chromophore-water complexes is complementary to the traditional paradigm of photocatalytic water splitting, which assumes the separation of electrons and holes over substantial time scales and distances.
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Affiliation(s)
- Johannes Ehrmaier
- Department of Chemistry, Technical University of Munich , Garching, Germany
| | - Tolga N V Karsili
- Department of Chemistry, Technical University of Munich , Garching, Germany.,Department of Chemistry, Temple University , Philadelphia, Pennsylvania 19122, United States
| | | | - Wolfgang Domcke
- Department of Chemistry, Technical University of Munich , Garching, Germany
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195
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Xie B, Cui G, Fang WH. Multiple-State Nonadiabatic Dynamics Simulation of Photoisomerization of Acetylacetone with the Direct ab Initio QTMF Approach. J Chem Theory Comput 2017; 13:2717-2729. [DOI: 10.1021/acs.jctc.7b00153] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Binbin Xie
- Key Laboratory of Theoretical
and Computational Photochemistry, Ministry of Education, College of
Chemistry, Beijing Normal University, Beijing 100875, China
| | - Ganglong Cui
- Key Laboratory of Theoretical
and Computational Photochemistry, Ministry of Education, College of
Chemistry, Beijing Normal University, Beijing 100875, China
| | - Wei-Hai Fang
- Key Laboratory of Theoretical
and Computational Photochemistry, Ministry of Education, College of
Chemistry, Beijing Normal University, Beijing 100875, China
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196
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Essafi S, Tew DP, Harvey JN. The Dynamics of the Reaction of FeO+
and H2
: A Model for Inorganic Oxidation. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201702009] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Stéphanie Essafi
- School of Chemistry; University of Bristol; Cantock's Close Bristol BS8 1TS UK
| | - David P. Tew
- School of Chemistry; University of Bristol; Cantock's Close Bristol BS8 1TS UK
| | - Jeremy N. Harvey
- School of Chemistry; University of Bristol; Cantock's Close Bristol BS8 1TS UK
- Department of Chemistry; KU Leuven; Celestijnenlaan 200F 3001 Heverlee Belgium
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197
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Lu J, Zhou Z. Path integral molecular dynamics with surface hopping for thermal equilibrium sampling of nonadiabatic systems. J Chem Phys 2017; 146:154110. [DOI: 10.1063/1.4981021] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Jianfeng Lu
- Department of Mathematics, Duke University, P.O. Box 90320, Durham, North Carolina 27708, USA
- Department of Physics and Department of Chemistry, Duke University, Durham, North Carolina 27708, USA
| | - Zhennan Zhou
- Department of Mathematics, Duke University, P.O. Box 90320, Durham, North Carolina 27708, USA
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198
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Essafi S, Tew DP, Harvey JN. The Dynamics of the Reaction of FeO+
and H2
: A Model for Inorganic Oxidation. Angew Chem Int Ed Engl 2017; 56:5790-5794. [DOI: 10.1002/anie.201702009] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Stéphanie Essafi
- School of Chemistry; University of Bristol; Cantock's Close Bristol BS8 1TS UK
| | - David P. Tew
- School of Chemistry; University of Bristol; Cantock's Close Bristol BS8 1TS UK
| | - Jeremy N. Harvey
- School of Chemistry; University of Bristol; Cantock's Close Bristol BS8 1TS UK
- Department of Chemistry; KU Leuven; Celestijnenlaan 200F 3001 Heverlee Belgium
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199
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Pederzoli M, Pittner J. A new approach to molecular dynamics with non-adiabatic and spin-orbit effects with applications to QM/MM simulations of thiophene and selenophene. J Chem Phys 2017; 146:114101. [DOI: 10.1063/1.4978289] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Marek Pederzoli
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, v.v.i., Dolejškova 3, 18223 Prague 8, Czech Republic
- Faculty of Science, Department of Physical and Macromolecular Chemistry, Charles University in Prague, Hlavova 8, 12840 Prague 2, Czech Republic
| | - Jiří Pittner
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, v.v.i., Dolejškova 3, 18223 Prague 8, Czech Republic
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200
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Gao X, Bai S, Fazzi D, Niehaus T, Barbatti M, Thiel W. Evaluation of Spin-Orbit Couplings with Linear-Response Time-Dependent Density Functional Methods. J Chem Theory Comput 2017; 13:515-524. [DOI: 10.1021/acs.jctc.6b00915] [Citation(s) in RCA: 171] [Impact Index Per Article: 24.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Xing Gao
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz, D-45470, Mülheim an der Ruhr, Germany
| | - Shuming Bai
- Aix Marseille Univ, CNRS, ICR, Marseille, France
| | - Daniele Fazzi
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz, D-45470, Mülheim an der Ruhr, Germany
| | - Thomas Niehaus
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622, Villeurbanne, France
| | | | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz, D-45470, Mülheim an der Ruhr, Germany
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