Scanning tunneling microscopy: a unique tool in the study of chirality, dynamics, and reactivity in physisorbed organic monolayers

Supramolecular Self-Assemblies of β-Cyclodextrins with Aromatic Tethers: Factors Governing the Helical Columnar versus Linear Channel Superstructures

A series of 6-O-(p-substituted phenyl)-modified beta-cyclodextrin derivatives, i.e., 6-O-(4-bromophenyl)-beta-CD (1), 6-O-(4-nitrophenyl)-beta-CD (2), 6-O-(4-formylphenyl)-beta-CD (3), 6-phenylselenyl-6-deoxy-beta-CD (4), and 6-O-(4-hydroxybenzoyl)-beta-CD (5), were synthesized, and their inclusion complexation behavior in aqueous solution and self-assembling behavior in the solid state were comparatively studied by NMR spectroscopy, microcalorimetry, crystallography, and scanning tunneling microscopy. Interestingly, (seleno)ethers 1-4 and ester 5 displayed distinctly different self-assembling behavior in the solid state, affording a successively threading head-to-tail polymeric helical structure for the (seleno)ethers or a mutually penetrating tail-to-tail dimeric columnar channel structure for the ester. Combining the present and previous structures reported for the relevant beta-CD derivatives, we further deduce that the pivot heteroatom, through which the aromatic substituent is tethered to beta-CD, plays a critical role in determining the helix structure, endowing the 2-fold and 4-fold axes to the N/O- and S/Se-pivoted beta-CD aggregates, respectively. This means that one can control the self-assembling orientation, alignment, and helicity in the solid state by finely tuning the pivot atom and the tether length. Further NMR and calorimetric studies on the self-assembling behavior in aqueous solution revealed that the dimerization step is the key to the formation of linear polymeric supramolecular architecture, which is driven by favorable entropic contributions.

Experimental Confirmation of the Importance of Orientation in the Anomalous Chiral Sensitivity of Second Harmonic Generation

Macromolecular interactions were demonstrated to yield large chiroptical effects in second harmonic generation measurements of ultrathin surface films. Second harmonic generation (SHG) has recently shown to be several orders of magnitude more sensitive to chirality in oriented systems than common linear methods, including absorbance circular dichroism (CD) and optical rotary dispersion (ORD). Numerous mechanisms have been developed to explain this anomalous sensitivity, with a general emphasis on understanding the molecular origins of the chromophore chirality. In this work, orientational effects alone are shown to be the dominant factor for generating large SHG chiral dichroic ratios in many surface systems. Three distinct uniaxial surface films of SHG-active achiral chromophores oriented at chiral templated surfaces were observed to yield chiral dichroic ratios as great as 40% in magnitude.

Spontaneous resolution under supramolecular control

The spontaneous resolution of enantiomers is an intriguing and important phenomenon in a number of research areas. Non-covalent interactions can play a key role in the process which can now be observed not only in crystals, but in liquid crystals, self-assembled monolayers, self-assembled fibres, and supramolecules self-assembled in solution. The evidence gathered in all of these areas is important for explaining the transfer of chirality from molecule to bulk, and in particular the spontaneous resolution of enantiomers.

Inequivalent molecules in a two-dimensional crystal

Physisorbed monolayers formed at solution-solid interfaces are two-dimensional crystals sharing many structural characteristics, such as packing motifs and reactivity, with their three-dimensional counterparts. Study of these monolayers with scanning tunneling microscopy (STM) offers a promising tool for exploring crystallization phenomena. Although the analogy between the structures of two-dimensional and three-dimensional crystals is becoming clearer with the imaging of increasing numbers of molecules with STM, the occurrence of inequivalent molecules in a unit cell has been limited to three-dimensional crystals. We report that the monolayer of 1,3-dinonadecanoyl benzene formed at the solution-HOPG interface possesses a unit cell with 1.5 inequivalent molecules (Z' = 1.5) demonstrating that, as in the case of three-dimensional crystals, simple molecules can give rise to inequivalent packing in the solid state.

Chirality of living systems: a helping hand from crystals and oligopeptides

Left-right asymmetry is ubiquitous in nature. Recent studies reveal changes in the energy and growth rate of crystal surfaces to which D or L amino acids bind, with the binding itself being dictated by stereochemical matching. Likewise, oligomerization of amino acids appears to be a chiroselective process that enables the propagation of sequences with defined handedness.[[For a definition of chiroselective self-assembly, see: M. Bolli, R. Micura, A. Eschenmoser, Chem. Biol. 1997, 4, 309-320.]] These results, along with related findings on symmetry breaking and further amplification of asymmetry at a supramolecular level, constitute new insights into the origin of homochirality in living species.

From local adsorption stresses to chiral surfaces: (R,R)-tartaric acid on Ni(110)

The chiral molecule (R,R)-tartaric acid adsorbed on nickel surfaces creates highly enantioselective heterogeneous catalysts, but the nature of chiral modification remains unknown. Here, we report on the behavior of this chiral molecule with a defined Ni(110) surface. A combination of reflection absorption infrared spectroscopy, scanning tunneling microscopy, and periodic density functional theory calculations reveals a new mode of chiral induction. At room temperatures and low coverages, (R,R)-tartaric acid is adsorbed in its bitartrate form with two-point bonding to the surface via both carboxylate groups. The molecule is preferentially located above the 4-fold hollow site with each carboxylate functionality adsorbed at the short bridge site via O atoms placed above adjacent Ni atoms. However, repulsive interactions between the chiral OH groups of the molecule and the metal atoms lead to severely strained adsorption on the bulk-truncation Ni(110) surface. As a result, the most stable adsorption structure is one in which this adsorption-induced stress is alleviated by significant relaxation of surface metal atoms so that a long distance of 7.47 A between pairs of Ni atoms can be accommodated at the surface. Interestingly, this leads the bonding Ni atoms to describe a chiral footprint at the surface for which all local mirror symmetry planes are destroyed. Calculations show only one chiral footprint to be favored by the (R,R)-tartaric acid, with the mirror adsorption site being unstable by 6 kJ mol(-1). This energy difference is sufficient to enable the same local chiral reconstruction and motif to be sustained over 90% of the system, leading to an overall highly chiral metal surface.

Stability of chiral domains produced by adsorption of tartaric acid isomers on the Cu(110) surface: a periodic density functional theory study

In the present work the interaction of different bitartrate isomers on the Cu(110) surface has been investigated systematically by using the Vienna Ab-initio Simulation Package (VASP), which performs periodical density functional theory (DFT) calculations. Among all bitartrate isomers the R,R-configuration is the most stable under the (3 1, 1 2) domain on the Cu surface. Its optical isomer, the S,S-bitartrate, is 10 kJ mol(-)(1) less stable in the same domain. This energy difference is sufficient to produce the distinct chiral assemblies observed after the adsorption of each optical isomer on the Cu surface. The calculations also showed that these domains are not formed due to intermolecular H-bonds, in contrast with the previous proposal by Raval et al.(Nature 2000, 23, 376). In fact, there is a formation of optimal intramolecular H-bonds in the chemisorption structures. A favorable packing orientation is also needed for the respective chiral domains. For instance, the S,S-configuration suffers from a destabilizing packing energy of 21 kJ mol(-)(1) under the same domain, due to a short contact between the H atoms of the hydroxy groups. These intramolecular H-bonds cause also some distortions on the bitartrate molecule, which appear to be dependent on the relative position of the alpha-hydroxy groups. The stability of the extended asymmetric domains, when the surface is modified by a chiral additive, might have important consequences for understanding and optimizing the properties of enantioselective heterogeneous catalysts.