151
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Purohit VB, Karad SC, Patel KH, Raval DK. Cu(N-heterocyclic carbene)chloride: an efficient catalyst for multicomponent click reaction for the synthesis of 1,2,3-triazoles in water at room temperature. RSC Adv 2014. [DOI: 10.1039/c4ra08412h] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
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152
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Fluorogenic dual click derived bis-glycoconjugated triazolocoumarins for selective recognition of Cu(II) ion. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.06.052] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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153
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Soumya T, Thasnim P, Bahulayan D. Step-economic and cost effective synthesis of coumarin based blue emitting fluorescent dyes. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.06.071] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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154
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Conde J, Dias JT, Grazú V, Moros M, Baptista PV, de la Fuente JM. Revisiting 30 years of biofunctionalization and surface chemistry of inorganic nanoparticles for nanomedicine. Front Chem 2014; 2:48. [PMID: 25077142 PMCID: PMC4097105 DOI: 10.3389/fchem.2014.00048] [Citation(s) in RCA: 224] [Impact Index Per Article: 22.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2014] [Accepted: 06/24/2014] [Indexed: 01/04/2023] Open
Abstract
In the last 30 years we have assisted to a massive advance of nanomaterials in material science. Nanomaterials and structures, in addition to their small size, have properties that differ from those of larger bulk materials, making them ideal for a host of novel applications. The spread of nanotechnology in the last years has been due to the improvement of synthesis and characterization methods on the nanoscale, a field rich in new physical phenomena and synthetic opportunities. In fact, the development of functional nanoparticles has progressed exponentially over the past two decades. This work aims to extensively review 30 years of different strategies of surface modification and functionalization of noble metal (gold) nanoparticles, magnetic nanocrystals and semiconductor nanoparticles, such as quantum dots. The aim of this review is not only to provide in-depth insights into the different biofunctionalization and characterization methods, but also to give an overview of possibilities and limitations of the available nanoparticles.
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Affiliation(s)
- João Conde
- Harvard-MIT Division for Health Sciences and Technology, Institute for Medical Engineering and Science, Massachusetts Institute of TechnologyCambridge, MA, USA
| | - Jorge T. Dias
- Nanotherapy and Nanodiagnostics Group, Instituto de Nanociencia de Aragon, Universidad de ZaragozaZaragoza, Spain
| | - Valeria Grazú
- Nanotherapy and Nanodiagnostics Group, Instituto de Nanociencia de Aragon, Universidad de ZaragozaZaragoza, Spain
| | - Maria Moros
- Nanotherapy and Nanodiagnostics Group, Instituto de Nanociencia de Aragon, Universidad de ZaragozaZaragoza, Spain
| | - Pedro V. Baptista
- CIGMH, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de LisboaCaparica, Portugal
| | - Jesus M. de la Fuente
- Nanotherapy and Nanodiagnostics Group, Instituto de Nanociencia de Aragon, Universidad de ZaragozaZaragoza, Spain
- Fundacion ARAIDZaragoza, Spain
- Key Laboratory for Thin Film and Microfabrication Technology of the Ministry of Education, Department of Bio-Nano Science and Engineering, Institute of Nano Biomedicine and Engineering, Research Institute of Translation Medicine, Shanghai Jiao Tong UniversityShanghai, China
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155
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Shie JJ, Liu YC, Lee YM, Lim C, Fang JM, Wong CH. An Azido-BODIPY Probe for Glycosylation: Initiation of Strong Fluorescence upon Triazole Formation. J Am Chem Soc 2014; 136:9953-61. [DOI: 10.1021/ja5010174] [Citation(s) in RCA: 81] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Jiun-Jie Shie
- The
Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan
| | - Ying-Chih Liu
- The
Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan
| | - Yu-Ming Lee
- Institute
of Biomedical Sciences, Academia Sinica, Taipei 115, Taiwan
| | - Carmay Lim
- Institute
of Biomedical Sciences, Academia Sinica, Taipei 115, Taiwan
| | - Jim-Min Fang
- The
Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan
- Department
of Chemistry, National Taiwan University, Taipei 106, Taiwan
| | - Chi-Huey Wong
- The
Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan
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156
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Sun R, Wang H, Hu J, Zhao J, Zhang H. Pyridine-phosphinimine ligand-accelerated Cu(i)-catalyzed azide–alkyne cycloaddition for preparation of 1-(pyridin-2-yl)-1,2,3-triazole derivatives. Org Biomol Chem 2014; 12:5954-63. [DOI: 10.1039/c4ob01176g] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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157
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Herner A, Estrada Girona G, Nikić I, Kállay M, Lemke EA, Kele P. New generation of bioorthogonally applicable fluorogenic dyes with visible excitations and large Stokes shifts. Bioconjug Chem 2014; 25:1370-4. [PMID: 24932756 DOI: 10.1021/bc500235p] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Synthesis of a set of new, azide bearing, biorthogonally applicable fluorogenic dyes with large Stokes shifts is presented herein. To assess the fluorogenic performance of these new dyes we have labeled a genetically modulated, cyclooctyne-bearing protein in lysate medium. Studies showed that the labels produce specific signal with minimal background fluorescence. We also provide theoretical insights into the design of such fluorogenic labels.
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Affiliation(s)
- András Herner
- "Lendület" Chemical Biology Research Group, Research Centre for Natural Sciences, Institute of Organic Chemistry, Hungarian Academy of Sciences , Magyar tudósok krt. 2., H-1117 Budapest, Hungary
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158
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Medina F, Besnard C, Lacour J. One-step synthesis of nitrogen-containing medium-sized rings via α-imino diazo intermediates. Org Lett 2014; 16:3232-5. [PMID: 24885761 DOI: 10.1021/ol5012532] [Citation(s) in RCA: 90] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Eight- and 9-membered dioxazocines and dioxazonines are readily synthesized starting from N-sulfonyl-1,2,3-triazoles in a single-step procedure. A perfect regioselectivity and generally good yields (up to 92%) are obtained under dirhodium catalysis using 1,3-dioxolane and 1,3-dioxane as solvents and reagents.
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Affiliation(s)
- Florian Medina
- Department of Organic Chemistry, University of Geneva , 30 Quai Ernest Ansermet, CH-1211 Geneva 4, Switzerland
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159
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Imaging bacterial peptidoglycan with near-infrared fluorogenic azide probes. Proc Natl Acad Sci U S A 2014; 111:5456-61. [PMID: 24706769 DOI: 10.1073/pnas.1322727111] [Citation(s) in RCA: 151] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
Fluorescent probes designed for activation by bioorthogonal chemistry have enabled the visualization of biomolecules in living systems. Such activatable probes with near-infrared (NIR) emission would be ideal for in vivo imaging but have proven difficult to engineer. We present the development of NIR fluorogenic azide probes based on the Si-rhodamine scaffold that undergo a fluorescence enhancement of up to 48-fold upon reaction with terminal or strained alkynes. We used the probes for mammalian cell surface imaging and, in conjunction with a new class of cyclooctyne D-amino acids, for visualization of bacterial peptidoglycan without the need to wash away unreacted probe.
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160
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Balan B, Bahulayan D. A novel green synthesis of α/β-amino acid functionalized pyrimidinone peptidomimetics using triazole ligation through click-multi-component reactions. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2013.11.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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161
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Rong L, Liu LH, Chen S, Cheng H, Chen CS, Li ZY, Qin SY, Zhang XZ. A coumarin derivative as a fluorogenic glycoproteomic probe for biological imaging. Chem Commun (Camb) 2014; 50:667-9. [DOI: 10.1039/c3cc47323f] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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162
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Chauhan DP, Saha T, Lahiri M, Talukdar P. BODIPY based ‘click on’ fluorogenic dyes: application in live cell imaging. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2013.11.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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163
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164
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Berg R, Straub BF. Advancements in the mechanistic understanding of the copper-catalyzed azide-alkyne cycloaddition. Beilstein J Org Chem 2013; 9:2715-50. [PMID: 24367437 PMCID: PMC3869285 DOI: 10.3762/bjoc.9.308] [Citation(s) in RCA: 169] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2013] [Accepted: 10/30/2013] [Indexed: 12/21/2022] Open
Abstract
The copper-catalyzed azide-alkyne cycloaddition (CuAAC) is one of the most broadly applicable and easy-to-handle reactions in the arsenal of organic chemistry. However, the mechanistic understanding of this reaction has lagged behind the plethora of its applications for a long time. As reagent mixtures of copper salts and additives are commonly used in CuAAC reactions, the structure of the catalytically active species itself has remained subject to speculation, which can be attributed to the multifaceted aggregation chemistry of copper(I) alkyne and acetylide complexes. Following an introductory section on common catalyst systems in CuAAC reactions, this review will highlight experimental and computational studies from early proposals to very recent and more sophisticated investigations, which deliver more detailed insights into the CuAAC's catalytic cycle and the species involved. As diverging mechanistic views are presented in articles, books and online resources, we intend to present the research efforts in this field during the past decade and finally give an up-to-date picture of the currently accepted dinuclear mechanism of CuAAC. Additionally, we hope to inspire research efforts on the development of molecularly defined copper(I) catalysts with defined structural characteristics, whose main advantage in contrast to the regularly used precatalyst reagent mixtures is twofold: on the one hand, the characteristics of molecularly defined, well soluble catalysts can be tuned according to the particular requirements of the experiment; on the other hand, the understanding of the CuAAC reaction mechanism can be further advanced by kinetic studies and the isolation and characterization of key intermediates.
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Affiliation(s)
- Regina Berg
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Bernd F Straub
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
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165
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Chauhan DP, Varma SJ, Vijeta A, Banerjee P, Talukdar P. A 1,3-amino group migration route to form acrylamidines. Chem Commun (Camb) 2013; 50:323-5. [PMID: 24233059 DOI: 10.1039/c3cc47182a] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel 1,3-amino group migration strategy for the synthesis of acrylamidines is presented. Cu(i) catalyzed reaction of N,N-disubstituted propargylamine with tosylazide generates a highly reactive ketenimine intermediate which is trapped by a tethered amino group leading to the rearrangement reaction.
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Affiliation(s)
- Dinesh Pratapsinh Chauhan
- Department of Chemistry, Mendeleev Block, Indian Institute of Science Education and Research, Pune, India.
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166
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Li L, Hao G, Zhu A, Liu S, Zhang G. Three-component assembly of 5-halo-1,2,3-triazoles via aerobic oxidative halogenation. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.08.089] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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167
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Wang B, Ahmed MN, Zhang J, Chen W, Wang X, Hu Y. Easy preparation of 1,4,5-trisubstituted 5-(2-alkoxy-1,2-dioxoethyl)-1,2,3-triazoles by chemoselective trapping of copper(I)–carbon bond with alkoxalyl chloride. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.08.121] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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168
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Cserép GB, Herner A, Wolfbeis OS, Kele P. Tyrosine specific sequential labeling of proteins. Bioorg Med Chem Lett 2013; 23:5776-8. [DOI: 10.1016/j.bmcl.2013.09.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2013] [Revised: 08/30/2013] [Accepted: 09/03/2013] [Indexed: 01/23/2023]
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169
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Qiu S, Lin Z, Zhou Y, Li R, Zhang J, Zhang D, Luo L, Guo L, Qiu B, Chen G. Label-Free Fluorometric Method for Monitoring Conformational Flexibility of Laccase Based on a Selective Laccase Sensor. Anal Chem 2013; 85:11041-6. [DOI: 10.1021/ac402693k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Suyan Qiu
- Institute for Quality & Safety and Standards of Agricultural Products Research, Jiangxi Academy of Agricultural Sciences, Nanchang, Jiangxi, 330200, China
| | - Zhenyu Lin
- MOE
Key Laboratory of Analysis and Detection for Food Safety, Fujian Provincial
Key Laboratory of Analysis and Detection Technology for Food Safety,
Department of Chemistry, Fuzhou University, Fuzhou, Fujian, 350002, China
| | - Yaomin Zhou
- Institute for Quality & Safety and Standards of Agricultural Products Research, Jiangxi Academy of Agricultural Sciences, Nanchang, Jiangxi, 330200, China
| | - Ruili Li
- Institute for Quality & Safety and Standards of Agricultural Products Research, Jiangxi Academy of Agricultural Sciences, Nanchang, Jiangxi, 330200, China
| | - Jinyan Zhang
- Institute for Quality & Safety and Standards of Agricultural Products Research, Jiangxi Academy of Agricultural Sciences, Nanchang, Jiangxi, 330200, China
| | - Dawen Zhang
- Institute for Quality & Safety and Standards of Agricultural Products Research, Jiangxi Academy of Agricultural Sciences, Nanchang, Jiangxi, 330200, China
| | - Linguang Luo
- Institute for Quality & Safety and Standards of Agricultural Products Research, Jiangxi Academy of Agricultural Sciences, Nanchang, Jiangxi, 330200, China
| | - Longhua Guo
- MOE
Key Laboratory of Analysis and Detection for Food Safety, Fujian Provincial
Key Laboratory of Analysis and Detection Technology for Food Safety,
Department of Chemistry, Fuzhou University, Fuzhou, Fujian, 350002, China
| | - Bin Qiu
- MOE
Key Laboratory of Analysis and Detection for Food Safety, Fujian Provincial
Key Laboratory of Analysis and Detection Technology for Food Safety,
Department of Chemistry, Fuzhou University, Fuzhou, Fujian, 350002, China
| | - Guonan Chen
- MOE
Key Laboratory of Analysis and Detection for Food Safety, Fujian Provincial
Key Laboratory of Analysis and Detection Technology for Food Safety,
Department of Chemistry, Fuzhou University, Fuzhou, Fujian, 350002, China
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170
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Oligonucleotide Labelling Using a Fluorogenic “Click” Reaction with a Hemicarboxonium Salt. Molecules 2013; 18:12966-76. [PMID: 24141246 PMCID: PMC6270631 DOI: 10.3390/molecules181012966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2013] [Revised: 09/30/2013] [Accepted: 10/09/2013] [Indexed: 11/17/2022] Open
Abstract
Two fluorescent streptocyanine labelled oligonucleotides have been synthesized by a simple “click” reaction between a non-fluorescent hemicarboxonium salt and aminoalkyl functionalized thymidines within the oligonucleotide and their spectrophotometric properties have been studied.
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171
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Li L, Hao G, Zhu A, Fan X, Zhang G, Zhang L. A copper(I)-catalyzed three-component domino process: assembly of complex 1,2,3-triazolyl-5-phosphonates from azides, alkynes, and H-phosphates. Chemistry 2013; 19:14403-6. [PMID: 24114953 DOI: 10.1002/chem.201303324] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2013] [Indexed: 11/09/2022]
Abstract
Three is better than one! A new copper-catalyzed tricomponent reaction of a terminal alkyne, organic azide, and H-phosphate (CuAA[P]C) leads to a structurally diverse polysubstituted 1,2,3-triazolyl-5-phosphonate, which provides an efficient tool for the direct introduction of phosphonic acid groups by a "click reaction".
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Affiliation(s)
- Lingjun Li
- Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang 453007 (P. R. China), Fax: (+86) 3733325250.
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172
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Wang B, Liu N, Shao C, Zhang Q, Wang X, Hu Y. Preparation of 1,4,5-Trisubstituted 5-Acyl-1,2,3-triazoles by Selective Acylation between Copper(I)-Carbon(sp) and Copper(I)-Carbon(sp2) Bonds with Acyl Chlorides. Adv Synth Catal 2013. [DOI: 10.1002/adsc.201300307] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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173
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Candelon N, Hădade ND, Matache M, Canet JL, Cisnetti F, Funeriu DP, Nauton L, Gautier A. Luminogenic "clickable" lanthanide complexes for protein labeling. Chem Commun (Camb) 2013; 49:9206-8. [PMID: 23998183 DOI: 10.1039/c3cc44391d] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Development of lanthanide-based luminescent "switch-on" systems via azide-alkyne [3+2] cycloaddition is described. We used these for non-specific protein labeling and as tags for specific and selective activity-based protein labeling.
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Affiliation(s)
- Nicolas Candelon
- Clermont-Université, Université Blaise Pascal and ENSCCF, Institut de Chimie de Clermont-Ferrand, F-63177 Aubière, France.
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174
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Huo JP, Luo JC, Wu W, Xiong JF, Mo GZ, Wang ZY. Synthesis and Characterization of Fluorescent Brightening Agents with Chiral 2(5H)-Furanone and Bis-1,2,3-triazole Structure. Ind Eng Chem Res 2013. [DOI: 10.1021/ie401149p] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Jing-Pei Huo
- School of Chemistry and Environment,
Key Laboratory
of Theoretical Chemistry of Environment, Ministry of Education, South China Normal University, Guangzhou, 510006, People’s
Republic of China
| | - Jian-Cheng Luo
- School of Chemistry and Environment,
Key Laboratory
of Theoretical Chemistry of Environment, Ministry of Education, South China Normal University, Guangzhou, 510006, People’s
Republic of China
| | - Wei Wu
- School of Chemistry and Environment,
Key Laboratory
of Theoretical Chemistry of Environment, Ministry of Education, South China Normal University, Guangzhou, 510006, People’s
Republic of China
| | - Jin-Feng Xiong
- School of Chemistry and Environment,
Key Laboratory
of Theoretical Chemistry of Environment, Ministry of Education, South China Normal University, Guangzhou, 510006, People’s
Republic of China
| | - Guang-Zhen Mo
- School of Chemistry and Environment,
Key Laboratory
of Theoretical Chemistry of Environment, Ministry of Education, South China Normal University, Guangzhou, 510006, People’s
Republic of China
| | - Zhao-Yang Wang
- School of Chemistry and Environment,
Key Laboratory
of Theoretical Chemistry of Environment, Ministry of Education, South China Normal University, Guangzhou, 510006, People’s
Republic of China
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175
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Sączewski J, Hinc K, Obuchowski M, Gdaniec M. The Tandem Mannich-Electrophilic Amination Reaction: a Versatile Platform for Fluorescent Probing and Labeling. Chemistry 2013; 19:11531-5. [DOI: 10.1002/chem.201302085] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2013] [Indexed: 01/08/2023]
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176
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Neutral bile acid cyclic dimers exhibit fluoride coordination by cooperative aliphatic and triazole CH segments. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.05.031] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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177
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178
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Carlson JC, Meimetis LG, Hilderbrand S, Weissleder R. BODIPY-tetrazine derivatives as superbright bioorthogonal turn-on probes. Angew Chem Int Ed Engl 2013; 52:6917-20. [PMID: 23712730 PMCID: PMC3875324 DOI: 10.1002/anie.201301100] [Citation(s) in RCA: 258] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2013] [Revised: 03/28/2013] [Indexed: 12/30/2022]
Abstract
The fastest and the brightest: A new design that intimately connects tetrazine to a BODIPY fluorophore enables exceptionally efficient energy transfer and quenching. Upon reaction of the tetrazine, the brightness of the fluorophore increases more than a thousand-fold, a fluorogenic activation up to two orders of magnitude greater than previously described.
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Affiliation(s)
- Jonathan C.T. Carlson
- Center for Systems Biology, Massachusetts General Hospital, 185 Cambridge Street, Boston, MA 02114 (USA)
| | - Labros G. Meimetis
- Center for Systems Biology, Massachusetts General Hospital, 185 Cambridge Street, Boston, MA 02114 (USA)
| | - Scott Hilderbrand
- Center for Systems Biology, Massachusetts General Hospital, 185 Cambridge Street, Boston, MA 02114 (USA)
| | - Ralph Weissleder
- Center for Systems Biology, Massachusetts General Hospital, 185 Cambridge Street, Boston, MA 02114 (USA)
- Harvard Medical School, 200 Longwood Avenue, Boston, MA 02115, (USA)
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179
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Sun H, Peng X. Template-directed fluorogenic oligonucleotide ligation using "click" chemistry: detection of single nucleotide polymorphism in the human p53 tumor suppressor gene. Bioconjug Chem 2013; 24:1226-34. [PMID: 23806001 DOI: 10.1021/bc4001678] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
A novel nonfluorescent alkyne-modified coumarin phosphoramidite was synthesized and successfully incorporated into oligonucleotides, which were then used in highly efficient DNA interstrand cross-linking and ligation reactions via "click" chemistry. The template-directed fluorogenic ligation "click" chemistry reaction was used for single nucleotide polymorphism analysis, where the target DNA catalyzes the ligation of two nonfluorescent probes to generate a fluorescent product. The upstream oligonucleotide probe is a nonfluorescent alkyne-modified coumarin and the downstream probe is an azide-modified oligonucleotide. When bound to a fully complementary template, the oligonucleotides ligated to produce a fluorescent product with a fluorophore at the ligation point. Wild-type and mutant p53 alleles were used to demonstrate that template-directed fluorogenic oligonucleotide ligation is sequence-specific and is capable of single nucleotide discrimination under mild conditions, even without the removal of unreacted probes.
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Affiliation(s)
- Huabing Sun
- Department of Chemistry and Biochemistry, University of Wisconsin-Milwaukee, 3210 North Cramer Street, Milwaukee, WI 53211, USA
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180
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Qian W, Amegadzie A, Winternheimer D, Allen J. One-Pot Synthesis of 3-Triazolyl-2-iminochromenes via a Catalytic Three Component Cascade Reaction. Org Lett 2013; 15:2986-9. [DOI: 10.1021/ol401151z] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Wenyuan Qian
- Therapeutic Discovery, Amgen Inc., One Amgen Center Drive, Thousand Oaks, California 91320-1799, United States
| | - Albert Amegadzie
- Therapeutic Discovery, Amgen Inc., One Amgen Center Drive, Thousand Oaks, California 91320-1799, United States
| | - David Winternheimer
- Therapeutic Discovery, Amgen Inc., One Amgen Center Drive, Thousand Oaks, California 91320-1799, United States
| | - Jennifer Allen
- Therapeutic Discovery, Amgen Inc., One Amgen Center Drive, Thousand Oaks, California 91320-1799, United States
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181
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Carlson JCT, Meimetis LG, Hilderbrand SA, Weissleder R. BODIPY-Tetrazine Derivatives as Superbright Bioorthogonal Turn-on Probes. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201301100] [Citation(s) in RCA: 83] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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182
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Surface etching of methacrylic microparticles via basic hydrolysis and introduction of functional groups for click chemistry. J Colloid Interface Sci 2013; 397:185-91. [DOI: 10.1016/j.jcis.2013.02.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2012] [Revised: 01/26/2013] [Accepted: 02/01/2013] [Indexed: 11/23/2022]
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183
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Aydin EA, Altenbach HJ. Fluorogenic Diels–Alder reactions of novel phencyclone derivatives. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.01.095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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184
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Qiu S, Miao M, Wang T, Lin Z, Guo L, Qiu B, Chen G. A fluorescent probe for detection of histidine in cellular homogenate and ovalbumin based on the strategy of clickchemistry. Biosens Bioelectron 2013. [DOI: 10.1016/j.bios.2012.10.039] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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185
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Goonewardena SN, Leroueil PR, Gemborys C, Tahiliani P, Emery S, Baker JR, Zong H. Fluorogenic ‘click-on’ dendrimer reporter for rapid profiling of cell proliferation. Bioorg Med Chem Lett 2013; 23:2230-3. [DOI: 10.1016/j.bmcl.2013.01.061] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2012] [Revised: 01/09/2013] [Accepted: 01/16/2013] [Indexed: 02/04/2023]
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186
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Rousseau G, Fensterbank H, Baczko K, Cano M, Stenger I, Larpent C, Allard E. Synthesis of Clickable Water-Soluble Poly(amidoamine) Fullerodendrimers and Their Use for Surface Functionalization of Azido-Coated Polymer Nanoparticles. Chempluschem 2013. [DOI: 10.1002/cplu.201300045] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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187
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A novel fluorescent sensor for mutational p53 DNA sequence detection based on click chemistry. Biosens Bioelectron 2013; 41:403-8. [DOI: 10.1016/j.bios.2012.08.065] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2012] [Accepted: 08/31/2012] [Indexed: 11/22/2022]
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Lu J, Liu C, Hu J, Ju Y. Synthesis and micellar mimic properties of bile acid trimers. Bioorg Med Chem Lett 2013; 23:1302-5. [DOI: 10.1016/j.bmcl.2012.12.102] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2012] [Revised: 12/13/2012] [Accepted: 12/28/2012] [Indexed: 11/16/2022]
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189
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Cornec AS, Baudequin C, Fiol-Petit C, Plé N, Dupas G, Ramondenc Y. One “Click” to Access Push-Triazole-Pull Fluorophores Incorporating a Pyrimidine Moiety: Structure-Photophysical Properties Relationships. European J Org Chem 2013. [DOI: 10.1002/ejoc.201201033] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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190
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Reaction-based small-molecule fluorescent probes for chemoselective bioimaging. Nat Chem 2013; 4:973-84. [PMID: 23174976 DOI: 10.1038/nchem.1500] [Citation(s) in RCA: 1334] [Impact Index Per Article: 121.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2012] [Accepted: 10/12/2012] [Indexed: 12/15/2022]
Abstract
The dynamic chemical diversity of elements, ions and molecules that form the basis of life offers both a challenge and an opportunity for study. Small-molecule fluorescent probes can make use of selective, bioorthogonal chemistries to report on specific analytes in cells and in more complex biological specimens. These probes offer powerful reagents to interrogate the physiology and pathology of reactive chemical species in their native environments with minimal perturbation to living systems. This Review presents a survey of tools and tactics for using such probes to detect biologically important chemical analytes. We highlight design criteria for effective chemical tools for use in biological applications as well as gaps for future exploration.
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Bai SQ, Jiang L, Zuo JL, Hor TSA. Hybrid NS ligands supported Cu(i)/(ii) complexes for azide–alkyne cycloaddition reactions. Dalton Trans 2013; 42:11319-26. [DOI: 10.1039/c3dt50247c] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Zhu C, Yang B, Zhao Y, Fu C, Tao L, Wei Y. A new insight into the Biginelli reaction: the dawn of multicomponent click chemistry? Polym Chem 2013. [DOI: 10.1039/c3py00553d] [Citation(s) in RCA: 110] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Jiang L, Wang Z, Bai SQ, Hor TSA. “Click-and-click” – hybridised 1,2,3-triazoles supported Cu(i) coordination polymers for azide–alkyne cycloaddition. Dalton Trans 2013; 42:9437-43. [DOI: 10.1039/c3dt50987g] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Zhang Y, Tu Q, Wang DE, Chen Y, Lu B, Yuan MS, Wang J. Adamantyl-terminated dendronized molecules: synthesis and interaction with β-cyclodextrin-functionalized poly(dimethylsiloxane) interface. NEW J CHEM 2013. [DOI: 10.1039/c3nj00129f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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195
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Herner A, Nikić I, Kállay M, Lemke EA, Kele P. A new family of bioorthogonally applicable fluorogenic labels. Org Biomol Chem 2013; 11:3297-306. [DOI: 10.1039/c3ob40296g] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Tomohiro T, Yamamoto A, Tatsumi Y, Hatanaka Y. [3-(Trifluoromethyl)-3H-diazirin-3-yl]coumarin as a carbene-generating photocross-linker with masked fluorogenic beacon. Chem Commun (Camb) 2013; 49:11551-3. [DOI: 10.1039/c3cc45780j] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Zheng H, Qiu S, Xu K, Luo L, Song Y, Lin Z, Guo L, Qiu B, Chen G. Colorimetric and fluorometric dual-readout sensor for lysozyme. Analyst 2013; 138:6517-22. [DOI: 10.1039/c3an01194a] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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Hong L, Lin W, Zhang F, Liu R, Zhou X. Ln[N(SiMe3)2]3-catalyzed cycloaddition of terminal alkynes to azides leading to 1,5-disubstituted 1,2,3-triazoles: new mechanistic features. Chem Commun (Camb) 2013; 49:5589-91. [DOI: 10.1039/c3cc42534g] [Citation(s) in RCA: 95] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Yang J, Yin W, Liu R, Chu C. Facile Synthesis of 4,5-Disubstituted 2H-1,2,3-Triazoles by Catalyst-free Cycloaddition between Substituted Vinyl Sulfones and Sodium Azide under Ambient Conditions. CHINESE J CHEM 2012. [DOI: 10.1002/cjoc.201200998] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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