Highly sensitive biological and chemical sensors based on reversible fluorescence quenching in a conjugated polymer

Mechanically strong, fluorescent hydrogels from zwitterionic, fully π-conjugated polymers

Mechanically strong supramolecular hydrogels can be obtained by combining a rigid, fully π-conjugated polymer backbone and zwitterionic side chains.

Photoactivation and saturated emission in blended conjugated polymer nanoparticles

Blended poly[(9,9-dioctylfluorenyl-2,7-diyl)-co-(1,4-benzo-{2,1',3}-thiadiazole)] (PFBT)/poly[2-methoxy-5-(2-ethylhexyloxy)-1,4-phenylenevinylene] (MEH-PPV) conjugated polymer nanoparticles were prepared and characterized by conventional and single-particle fluorescence spectroscopy. The particles exhibit red emission and improved quantum efficiency resulting from highly efficient energy transfer from donor PFBT to acceptor MEH-PPV as well as suppression of MEH-PPV aggregation. Photobleaching results indicate better photostability in the blended sample compared to undoped MEH-PPV nanoparticles and photoactivation of donor emission, which could be useful for single-molecule localization-based super-resolution microscopy. Single blended nanoparticles exhibit bright fluorescence as well as saturation behavior at very low excitation intensities. These and other properties of the blended conjugated polymer nanoparticles could provide substantial improvements in resolution when employed in super-resolution microscopy.

Fluorescent silver nanoclusters as DNA probes

Fluorescent silver nanoclusters (few atoms, quantum sized) have attracted much attention as promising substitutes for conventional fluorophores. Due to their unique environmental sensitivities, new fluorescent probes have been developed based on silver nanoclusters for the sensitive and specific detection of DNA. In this review we present the recent discoveries of activatable and color-switchable properties of DNA-templated silver nanoclusters and discuss the strategies to use these new properties in DNA sensing.

New water soluble terphenylene diethynylene fluorophores

Inspired by our earlier works on sensors from dendritic phenyleneethynylenes, two new star-shaped water-soluble fluorophores containing terphenylene diethynylene units and anionic carboxylate peripheries are successfully synthesized. The convergent synthesis relies on Sonogashira cross-coupling reactions between tris-(4-ethynylphenyl)amine and the iodophenyleneethynylene branches. All of the compounds are characterized by (1)H, (13)C NMR, and mass spectrometry. In aqueous solution, the less polar fluorophore 1 shows lower quantum yield than 2 (18 vs 33%) as a result of hydrophobic induced aggregation. One of these anionic water-soluble fluorophores exhibits a selective fluorescence quenching by Fe(3+) ion in phosphate buffer pH 8.

Determination of L-argininamide based on water-soluble fluorescent conjugated polymer-aptamer

Water-soluble fluorescent conjugated polymer is a promising material which could be used as an optical platform in highly sensitive molecular sensors. In this paper, a simple label-free DNA sensor, which consisted of a poly(3-alkoxy-4-methylthiophene) and an aptamer, was used to detect L-argininamide (L-Arm). Due to the specific binding reaction between L-Arm and its aptamer, the proposed method can easily determinate the L-Arm through the recovery of fluorescence without any modification. Other ions or similar molecules had little effect on the detection. Moreover, there was a linear relationship between fluorescence intensity and the concentration of L-Arm. The detection limit of L-Arm was as low as 4.7 nM.

Water-soluble Semiconducting Nanoparticles for Imaging

Water-soluble semiconducting nanoparticles are prepared from individually collapsed and crosslinked ABA triblock copolymers and are further modified to carry imaging units and allyl functionalities for postmodification. Ethylene oxide modified polyfluorene forms the center block (B) and is transformed into a telechelic macroinitator. In a nitroxide mediated living free radical polymerization, polyacrylate blocks (A) are grown to give the ABA triblock copolymer. Low-temperature benzocyclobutene crosslinking groups are attached to collapse and site-isolate the center block (A). The nanoparticles were further modified by pegylation to enhance the solubility and by catechol groups to provide complexing sites for magnetic resonance imaging (MRI) reagents such as gadolinium. The reported materials are water-soluble and encompassing fluorescence and MRI to become biocompatible "organic quantum dots" with the possibility to interact actively with biological entities.

Triplet sensitization in an anionic poly(phenyleneethynylene) conjugated polyelectrolyte by cationic iridium complexes

We describe a systematic study of triplet sensitization in a poly(phenyleneethynylene) conjugated polyelectrolyte (CPE) in methanol solution by using a series of three cationic iridium complexes with varying triplet energy. The cationic iridium complexes bind to the anionic CPE by ion-pairing, leading to singlet state quenching of the polymer, and allowing for efficient back-transfer of triplet excitation energy to the polymer. Efficient (amplified quenching) of the polymer's fluorescence is observed for each iridium complex, with Stern-Volmer quenching constants in excess of 10(5) M(-1). Triplet sensitization is confirmed for two of the iridium complexes by monitoring the relative yield of the CPE triplet state by transient absorption spectroscopy. One of the iridium complexes does not sensitize the CPE triplet, and consideration of the energies of the three complexes allows us to bracket the triplet energy of the CPE within the range 1.95-2.26 eV.

Conjugated oligomer-based fluorescent nanoparticles as functional nanocarriers for nucleic acids delivery

Oligonucleotides such as siRNA and plasmid DNA (pDNA) have great potential for gene therapies. Multifunctional, environment-resistant carriers with imaging capabilities are required to track the assembly and disassembly of oligonucleotides, monitor the delivery processes, and develop new delivery systems. Conjugated polymers and oligomers can potentially be used as novel materials for functional nanocarriers with both delivery and imaging abilities. In this work, a novel π-conjugated oligomer 4,7-(9,9'-bis(6-adenine hexyl)fluorenyl)-2,1,3-benzothiadiazole (OFBT-A) modified with nucleotide adenine (A) groups in its side chains is synthesized and characterized. Fluorescent nanoparticles based on the π-conjugated oligomers OFBT-A are developed as novel functional nanocarriers for oligonucleotides. Single-stranded DNA (ssDNA) TR-T5 labeled with Texas Red (TR) fluorescent dye is selected as a model payload oligonucleotide. The capture abilities and stability of OFBT-A are investigated by monitoring the fluorescence resonance energy transfer (FRET) efficiency between the OFBT-A nanoparticles and TR labels in solution. The OFBT-A/TR-T5 composites are stable in solution at high ionic strengths (0-500 mM) and have a wide working pH range, from 3.0 to 9.5. The in vitro profile demonstrates that the release of the TR-DNA is induced by the ssDNA A43, which has a high charge density. The release process is monitored by measuring the changes in FRET efficiency and fluorescence color for the OFBT-A/TR-T5 composites. Using this carrier, the uptake of TR-DNA by A549 lung cancer cells is observed. Both the OFBT-A nanoparticles and the OFBT-A/TR-T5 composites show high cytocompatibility. We anticipate that these novel functional nanocarriers will provide a safe strategy for monitoring the gene delivery process.

Polythiophene-based optical sensors for small molecules

Water-soluble, regioregular polythiophene (PT) derivatives are conformational sensitive to external stimuli, and their spectral responses are determined by conformation changes, π-π interactions and scattering of visible lights originated from PT aggregates. In this paper, we review the synthesis of water-soluble PTs and their photophysical properties, and then highlight our efforts toward the development of PT-based optical sensors for small molecules. Mechanism studies indicate that the interplay between side-chain steric/electrostatic repulsive and interchain attractive interactions is responsible for the assembly and disassembly of water-soluble PTs in aqueous media. Consequently, the planarization/deplanarization of PT backbones provides the possibility for colorimetric and fluorescent dual detection of small bioanalytes and chemical species.

Conjugated amplifying polymers for optical sensing applications

Thanks to their unique optical and electrochemical properties, conjugated polymers have attracted considerable attention over the last two decades and resulted in numerous technological innovations. In particular, their implementation in sensing schemes and devices was widely investigated and produced a multitude of sensory systems and transduction mechanisms. Conjugated polymers possess numerous attractive features that make them particularly suitable for a broad variety of sensing tasks. They display sensory signal amplification (compared to their small-molecule counterparts) and their structures can easily be tailored to adjust solubility, absorption/emission wavelengths, energy offsets for excited state electron transfer, and/or for use in solution or in the solid state. This versatility has made conjugated polymers a fluorescence sensory platform of choice in the recent years. In this review, we highlight a variety of conjugated polymer-based sensory mechanisms together with selected examples from the recent literature.

Remarkable Photophysics and Amplified Quenching of Conjugated Polyelectrolyte Oligomers

We report the photophysics and fluorescence quenching of a series of monodisperse, anionic π-conjugated oligomers that are molecularly dissolved in aqueous solution. These structurally well-defined oligomers feature oligo(phenylene ethynylene) backbones with two -CH2COO(-) units on each repeat unit, with overall lengths of 5, 7, and 9 repeats. The ionic oligomers display a structured fluorescence band with high quantum efficiency in water, in contrast to the low fluorescence quantum efficiency and pronounced aggregation displayed by structurally similar oligomeric and polymeric (phenylene ethynylene) conjugated polyelectrolytes studied previously. Stern-Volmer (SV) fluorescence quenching studies using cationic charge- and energy-transfer quenchers reveal that all of the oligomers give rise to SV quenching constants (KSV) in excess of 10(6) M(-1), with values increasing with oligomer length, consistent with the amplified quenching effect. The amplified quenching effect is proposed to occur due to the formation of comparatively small oligomer aggregates.

Lipid membrane domains for the selective adsorption and surface patterning of conjugated polyelectrolytes

Conjugated polyelectrolytes (CPEs) are promising materials for generating optoelectronics devices under environmentally friendly processing conditions, but challenges remain to develop methods to define lateral features for improved junction interfaces and direct optoelectronic pathways. We describe here the potential to use a bottom-up approach that employs self-assembly in lipid membranes to form structures to template the selective adsorption of CPEs. Phase separation of gel phase anionic lipids and fluid phase phosphocholine lipids allowed the formation of negatively charged domain assemblies that selectively adsorb a cationic conjugated polyelectrolyte (P2). Spectroscopic studies found the adsorption of P2 to negatively charged membranes resulted in minimal structural change of the solution phase polymer but yielded an enhancement in fluorescence intensity (~50%) due to loss of quenching pathways. Fluorescence microscopy, dynamic light scattering, and AFM imaging were used to characterize the polymer-membrane interaction and the polymer-bound domain structures of the biphasic membranes. In addition to randomly formed circular gel phase domains, we also show that predefined features, such as straight lines, can be directed to form upon etched patterns on the substrate, thus providing potential routes toward the self-organization of optoelectronic architectures.

Impact of DNA sequence and oligonucleotide length on a polythiophene-based fluorescent DNA biosensor

DNA hybridization is a universal and specific mechanism for the recognition of biological targets. Some cationic polythiophene transducers sensitive to DNA structure have been previously utilized to detect such biomolecules. Further characterization of these systems indicates that both DNA sequence composition and length modulate the biosensor performance. It appears that different repeated sequence patterns cause different conformational changes of the polythiophene, from a more relaxed form to an extremely rigid one. A length difference between the DNA oligonucleotide probe and target has a detrimental effect on the fluorescent signal, but it can be attenuated by changing the sequence composition of the protruding target sequence. This demonstrates that the nature of DNA can be critical for hybridization-based detection systems.

Highly fluorescent semiconducting polymer dots for biology and medicine

In recent years, semiconducting polymer nanoparticles have attracted considerable attention because of their outstanding characteristics as fluorescent probes. These nanoparticles, which primarily consist of π-conjugated polymers and are called polymer dots (Pdots) when they exhibit small particle size and high brightness, have demonstrated utility in a wide range of applications such as fluorescence imaging and biosensing. In this review, we summarize recent findings of the photophysical properties of Pdots which speak to the merits of these entities as fluorescent labels. This review also highlights the surface functionalization and biomolecular conjugation of Pdots, and their applications in cellular labeling, in vivo imaging, single-particle tracking, biosensing, and drug delivery. We discuss the relationship between the physical properties and performance, and evaluate the merits and limitations of the Pdot probes for certain imaging tasks and fluorescence assays. We also tackle the current challenges of Pdots and share our perspective on the future directions of the field.

Thiazole-containing conjugated polymer as a visual and fluorometric sensor for iodide and mercury

A neutral conjugated polymer poly-p-phenylene (PPP) derivative, poly(1,4-bis-(8-(4-phenylthiazole-2-thiol)-octyloxy)-benzene) (PPT), was prepared using a simple and economical method of oxidative polymerization reaction. This newly synthesized polymer PPT was characterized by means of Fourier transform infrared spectroscopy (FT-IR), (1)H nuclear magnetic resonance ((1)H NMR), ultraviolet-visible (UV-Vis), and fluorescence spectroscopy. PPT displays fluorescence "turn-off/turn-on" characteristics and colorimetric responses to I(-) and Hg(2+). The UV-Vis and fluorescence spectra of the PPT showed a significant shift in λmax via the addition of iodides and mercury. A colorless PPT solution turns to deep yellow in the presence of iodide salts, which subsequently becomes colorless again on addition of Hg(2+) salts that could be easily detected visually by the naked eye. The Stern-Volmer constant (Ksv) value obtained for the detection of iodide is 0.13 × 10(5) M(-1), confirming very high sensitivity of this polymer for iodide salts. The detection limit of Hg(2+) salt using the PPT polymer was found to be 2.1 nM in water. The detection of both iodide and mercury was also possible in solid state by using a membrane film prepared by mixing 1% PPT in polystyrene. This membrane changes color in the presence of iodide as well as mercury salts. These results confirm that the PPT polymer can be applied for the colorimetric as well as fluorometric sensing of I(-) and Hg(2+) ions in a competent environment in solution, as well as in the solid state, using a membrane film rapidly.

Self-assembling semiconducting polymers--rods and gels from electronic materials

In an effort to favor the formation of straight polymer chains without crystalline grain boundaries, we have synthesized an amphiphilic conjugated polyelectrolyte, poly(fluorene-alt-thiophene) (PFT), which self-assembles in aqueous solutions to form cylindrical micelles. In contrast to many diblock copolymer assemblies, the semiconducting backbone runs parallel, not perpendicular, to the long axis of the cylindrical micelle. Solution-phase micelle formation is observed by X-ray and visible light scattering. The micelles can be cast as thin films, and the cylindrical morphology is preserved in the solid state. The effects of self-assembly are also observed through spectral shifts in optical absorption and photoluminescence. Solutions of higher-molecular-weight PFT micelles form gel networks at sufficiently high aqueous concentrations. Rheological characterization of the PFT gels reveals solid-like behavior and strain hardening below the yield point, properties similar to those found in entangled gels formed from surfactant-based micelles. Finally, electrical measurements on diode test structures indicate that, despite a complete lack of crystallinity in these self-assembled polymers, they effectively conduct electricity.

Synthesis of phenyleneethynylene-doped poly(pphenylenebutadiynylene) s for live cell imaging

We developed a new synthetic approach to high molecular weight poly(p-phenylenebutadiynylene) s (PPBs) by increasing backbone flexibility. The introduction of a small amount of flexible units along the backbone improved both the physical and photophysical properties of the polymers. These materials were successfully fabricated into conjugated polymer nanoparticles (CPNs) and used for fluorescent live cell imaging for the first time.

Conjugated polyelectrolyte dendrimers: aggregation, photophysics, and amplified quenching

Conjugated polyelectrolyte dendrimers (CPDs) are monodisperse macromolecules that feature a fully π-conjugated dendrimer core surrounded on the periphery by ionic solubilizing groups. CPDs are soluble in water and polar organic solvents, and they exhibit photophysics characteristic of the π-conjugated chromophores comprising the dendrimer core. Here we describe the synthesis and photophysical characterization of series of three generations of CPDs based on a phenylene ethynylene repeat unit structure that is surrounded by an array of anionic sodium carboxylate groups. Molecular dynamics simulations indicate that the first-generation CPD is flat while the second- and third-generation CPDs adopt oblate structures. Photophysical studies, including absorption, fluorescence spectroscopy, and lifetimes, show that the ester protected precursor dendrimers exhibit highly efficient blue fluorescence in THF solution emanating from the phenylene ethynylene chromophore that is in the dendrimer core. By contrast, the water-soluble CPDs have much lower fluorescence quantum yields and the absorption and fluorescence spectra exhibit features of strong chromophore-chromophore interactions. The results are interpreted as suggesting that the CPDs exist as dimer or multimer aggregates, even in very dilute solution. Fluorescence quenching of the anionic CPDs with the dication electron acceptor N,N'-dimethylviologen (MV(2+)) is very efficient, with Stern-Volmer quenching constants (K(SV)) increasing with generation number. The third-generation CPD exhibits highly efficient amplified quenching, with K(SV) ∼ 5 × 10(6) M(-1).

Interaction of heme proteins with anionic polyfluorene: insights into physiological effects, folding events, and inhibition activity

Because of the toxicity caused by the heme redox-active iron proteins, their elevated levels, localization, and accumulation in the brain, many forms of neurodegenerative diseases, such as Alzheimer's disease, Parkinson's disease, and Huntington's disease, occur as a result of which the brain becomes vulnerable to oxidative stress, ultimately resulting in neuronal death. An anionic water-soluble conjugated polyfluorene derivative poly(9,9-bis(6-sulfate hexyl) fluorene-alt-1,4-phenylene) sodium salt (P1) that binds Fe³⁺ proteins with very high selectivity and sensitivity is reported here. The photophysical properties of P1 were modified by the interaction with ferric heme-containing proteins cytochrome c (Cc), methemoglobin (MetHb), and hemin. P1 was found to be highly sensitive toward Fe³⁺ heme proteins as compared to nonmetalloproteins. We observed that the respective activities of ferric heme proteins were inhibited and proteins were unfolded, due to modification in their heme microenvironment in the presence of the polymer P1. The observations reported in this article provide the first example for the use of a water-soluble conjugated polymer in applications, such as (1) to detect small quantities of iron proteins in aqueous medium/physiological condition with the highest K(sv) values of 2.27 × 10⁸ M⁻¹ for Cc, 3.81 × 10⁷ M⁻¹ for MetHb, and 5.31 × 10⁷ M⁻¹ for hemin; (2) to study the physiological effects of heme metalloproteins; (3) to visualize the folding events in real time; and (4) the inhibition activity of metalloproteins can be selectively studied using a conjugated polymer based assay system rapidly without interference from nonmetalloproteins at biological pH. All this is achieved by generating optical events, taking advantage of the bright fluorescence of anionic polyfluorene P1 in this case, that can be observed and monitored by modification in the absorption and emission color in real time.