151
|
Begušić T, Roulet J, Vaníček J. On-the-fly ab initio semiclassical evaluation of time-resolved electronic spectra. J Chem Phys 2018; 149:244115. [DOI: 10.1063/1.5054586] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Tomislav Begušić
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Julien Roulet
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jiří Vaníček
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| |
Collapse
|
152
|
Ma T, Bonfanti M, Eisenbrandt P, Martinazzo R, Burghardt I. Multi-configurational Ehrenfest simulations of ultrafast nonadiabatic dynamics in a charge-transfer complex. J Chem Phys 2018; 149:244107. [DOI: 10.1063/1.5062608] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Tianji Ma
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, D-60438 Frankfurt/Main, Germany
| | - Matteo Bonfanti
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, D-60438 Frankfurt/Main, Germany
| | - Pierre Eisenbrandt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, D-60438 Frankfurt/Main, Germany
| | - Rocco Martinazzo
- Department of Chemistry, Università degli Studi di Milano, Via Golgi 19, 20133 Milano, Italy
| | - Irene Burghardt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, D-60438 Frankfurt/Main, Germany
| |
Collapse
|
153
|
Plasser F, Gómez S, Menger MFSJ, Mai S, González L. Highly efficient surface hopping dynamics using a linear vibronic coupling model. Phys Chem Chem Phys 2018; 21:57-69. [PMID: 30306987 DOI: 10.1039/c8cp05662e] [Citation(s) in RCA: 72] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
We report an implementation of the linear vibronic coupling (LVC) model within the surface hopping dynamics approach and present utilities for parameterizing this model in a blackbox fashion. This results in an extremely efficient method to obtain qualitative and even semi-quantitative information about the photodynamical behavior of a molecule, and provides a new route toward benchmarking the results of surface hopping computations. The merits and applicability of the method are demonstrated in a number of applications. First, the method is applied to the SO2 molecule showing that it is possible to compute its absorption spectrum beyond the Condon approximation, and that all the main features and timescales of previous on-the-fly dynamics simulations of intersystem crossing are reproduced while reducing the computational effort by three orders of magnitude. The dynamics results are benchmarked against exact wavepacket propagations on the same LVC potentials and against a variation of the electronic structure level. Four additional test cases are presented to exemplify the broader applicability of the model. The photodynamics of the isomeric adenine and 2-aminopurine molecules are studied and it is shown that the LVC model correctly predicts ultrafast decay in the former and an extended excited-state lifetime in the latter. Futhermore, the method correctly predicts ultrafast intersystem crossing in the modified nucleobase 2-thiocytosine and its absence in 5-azacytosine while it fails to describe the ultrafast internal conversion to the ground state in the latter.
Collapse
Affiliation(s)
- Felix Plasser
- Department of Chemistry, Loughborough University, Loughborough, LE11 3TU, UK.
| | | | | | | | | |
Collapse
|
154
|
Han S, Xie D, Guo H. Modified Gaussian Wave Packet Method for Calculating Initial State Wave Functions in Photodissociation. J Chem Theory Comput 2018; 14:5527-5534. [PMID: 30234984 DOI: 10.1021/acs.jctc.8b00771] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A modified Gaussian wave packet relaxation method is proposed to calculate the ground state wave function using an expansion of frozen Gaussian wave packets. This new procedure consists of two steps. In the first step, a multidimensional Gaussian product placed at the ground state equilibrium geometry is propagated in imaginary time. The relaxation optimizes the widths of the one-dimensional Gaussians. In the second step, additional Gaussian wave packets with the same widths are placed near the equilibrium geometry, and the corresponding expansion coefficients are optimized using the same relaxation method. This new algorithm is tested in photodissociation of NOCl and NH3, and the results show good agreement with the exact results in the energy, wave function, and absorption spectrum. In particular, the highly structured absorption spectrum of NH3 is reproduced, underscoring the accuracy of both the initial wave packet and the excited state propagation.
Collapse
Affiliation(s)
- Shanyu Han
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry, School of Chemistry and Chemical Engineering , Nanjing University , Nanjing 210093 , China.,Department of Chemistry and Chemical Biology , University of New Mexico , Albuquerque , New Mexico 87131 , United States
| | - Daiqian Xie
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry, School of Chemistry and Chemical Engineering , Nanjing University , Nanjing 210093 , China
| | - Hua Guo
- Department of Chemistry and Chemical Biology , University of New Mexico , Albuquerque , New Mexico 87131 , United States
| |
Collapse
|
155
|
Eisenbrandt P, Ruckenbauer M, Römer S, Burghardt I. Gaussian-based multiconfiguration time-dependent Hartree: A two-layer approach. II. Application to vibrational energy transport in a molecular chain. J Chem Phys 2018; 149:174101. [DOI: 10.1063/1.5053414] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- P. Eisenbrandt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - M. Ruckenbauer
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - S. Römer
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - I. Burghardt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| |
Collapse
|
156
|
Xie Y, Zheng J, Lan Z. Performance evaluation of the symmetrical quasi-classical dynamics method based on Meyer-Miller mapping Hamiltonian in the treatment of site-exciton models. J Chem Phys 2018; 149:174105. [DOI: 10.1063/1.5047002] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yu Xie
- Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, Shandong, China
- The Environmental Research Institute; MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
| | - Jie Zheng
- Industrial Research Institute of Nonwovens and Technical Textiles, College of Textiles and Clothing, Qingdao University, Qingdao 266071, China
| | - Zhenggang Lan
- Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, Shandong, China
- The Environmental Research Institute; MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
| |
Collapse
|
157
|
Eisenbrandt P, Ruckenbauer M, Burghardt I. Gaussian-based multiconfiguration time-dependent Hartree: A two-layer approach. III. Application to nonadiabatic dynamics in a charge transfer complex. J Chem Phys 2018; 149:174102. [DOI: 10.1063/1.5053417] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Affiliation(s)
- P. Eisenbrandt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - M. Ruckenbauer
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - I. Burghardt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| |
Collapse
|
158
|
Tangent space formulation of the Multi-Configuration Time-Dependent Hartree equations of motion: The projector–splitting algorithm revisited. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.05.029] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
159
|
Begušić T, Patoz A, Šulc M, Vaníček J. On-the-fly ab initio three thawed Gaussians approximation: A semiclassical approach to Herzberg-Teller spectra. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.08.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
|
160
|
Mai S, Marquetand P, González L. Nonadiabatic dynamics: The SHARC approach. WILEY INTERDISCIPLINARY REVIEWS. COMPUTATIONAL MOLECULAR SCIENCE 2018; 8:e1370. [PMID: 30450129 PMCID: PMC6220962 DOI: 10.1002/wcms.1370] [Citation(s) in RCA: 224] [Impact Index Per Article: 37.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Revised: 04/05/2018] [Accepted: 04/06/2018] [Indexed: 12/12/2022]
Abstract
We review the Surface Hopping including ARbitrary Couplings (SHARC) approach for excited-state nonadiabatic dynamics simulations. As a generalization of the popular surface hopping method, SHARC allows simulating the full-dimensional dynamics of molecules including any type of coupling terms beyond nonadiabatic couplings. Examples of these arbitrary couplings include spin-orbit couplings or dipole moment-laser field couplings, such that SHARC can describe ultrafast internal conversion, intersystem crossing, and radiative processes. The key step of the SHARC approach consists of a diagonalization of the Hamiltonian including these couplings, such that the nuclear dynamics is carried out on potential energy surfaces including the effects of the couplings-this is critical in any applications considering, for example, transition metal complexes or strong laser fields. We also give an overview over the new SHARC2.0 dynamics software package, released under the GNU General Public License, which implements the SHARC approach and several analysis tools. The review closes with a brief survey of applications where SHARC was employed to study the nonadiabatic dynamics of a wide range of molecular systems. This article is categorized under: Theoretical and Physical Chemistry > Reaction Dynamics and KineticsSoftware > Simulation MethodsSoftware > Quantum Chemistry.
Collapse
Affiliation(s)
- Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry University of Vienna Vienna Austria
| | - Philipp Marquetand
- Institute of Theoretical Chemistry, Faculty of Chemistry University of Vienna Vienna Austria
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry University of Vienna Vienna Austria
| |
Collapse
|
161
|
Madsen NK, Hansen MB, Zoccante A, Monrad K, Hansen MB, Christiansen O. Exponential parameterization of wave functions for quantum dynamics: Time-dependent Hartree in second quantization. J Chem Phys 2018; 149:134110. [DOI: 10.1063/1.5049344] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Niels Kristian Madsen
- Department of Chemistry, University of Aarhus, Langelandsgade 140, DK-8000 Aarhus C, Denmark
| | - Mads Bøttger Hansen
- Department of Chemistry, University of Aarhus, Langelandsgade 140, DK-8000 Aarhus C, Denmark
| | - Alberto Zoccante
- Department of Chemistry, University of Aarhus, Langelandsgade 140, DK-8000 Aarhus C, Denmark
| | - Kasper Monrad
- Department of Chemistry, University of Aarhus, Langelandsgade 140, DK-8000 Aarhus C, Denmark
| | - Mikkel Bo Hansen
- Department of Chemistry, University of Aarhus, Langelandsgade 140, DK-8000 Aarhus C, Denmark
| | - Ove Christiansen
- Department of Chemistry, University of Aarhus, Langelandsgade 140, DK-8000 Aarhus C, Denmark
| |
Collapse
|
162
|
Murakami T, Frankcombe TJ. Accurate quantum molecular dynamics for multidimensional systems by the basis expansion leaping multi-configuration Gaussian (BEL MCG) method. J Chem Phys 2018; 149:134113. [DOI: 10.1063/1.5046643] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Tatsuhiro Murakami
- School of Physical, Environmental and Mathematical Sciences, University of New South Wales, Canberra, ACT 2600, Australia
| | - Terry J. Frankcombe
- School of Physical, Environmental and Mathematical Sciences, University of New South Wales, Canberra, ACT 2600, Australia
| |
Collapse
|
163
|
Northey T, Duffield J, Penfold TJ. Non-equilibrium x-ray spectroscopy using direct quantum dynamics. J Chem Phys 2018; 149:124107. [DOI: 10.1063/1.5047487] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- T. Northey
- Chemistry-School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom
| | - J. Duffield
- Chemistry-School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom
| | - T. J. Penfold
- Chemistry-School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom
| |
Collapse
|
164
|
Bonfanti M, Petersen J, Eisenbrandt P, Burghardt I, Pollak E. Computation of the S 1 ← S 0 Vibronic Absorption Spectrum of Formaldehyde by Variational Gaussian Wavepacket and Semiclassical IVR Methods. J Chem Theory Comput 2018; 14:5310-5323. [PMID: 30141930 DOI: 10.1021/acs.jctc.8b00355] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The vibronic absorption spectrum of the electric dipole forbidden and vibronically allowed S1(1 A2) ← S0(1 A1) transition of formaldehyde is calculated by Gaussian wavepacket and semiclassical methods, along with numerically exact reference calculations, using the potential energy surface of Fu, Shepler, and Bowman ( J. Am. Chem. Soc. 2011, 133, 7957). Specifically, the variational multiconfigurational Gaussian (vMCG) approach and the Herman-Kluk semiclassical initial value representation (HK-SCIVR) are compared to assess the accuracy and convergence of these methods, benchmarked against numerically exact time-dependent wavepacket propagation (TDWP) on the reference potential energy surface. The vMCG calculation is shown to converge quite well with about 100 variationally evolving Gaussian functions and using a local cubic expansion instead of the conventional local harmonic approximation. By contrast, the HK-SCIVR approach with ∼105 trajectories reproduces the vibrationally structured spectral envelope correctly but yields a strongly broadened spectrum. The comparison of the computed absorption spectrum with experiment shows that the relevant vibronic progressions are reasonably reproduced by all computations, but deviations of the order of 10-100 cm-1 occur, underscoring that both electronic structure calculations and dynamical approaches remain challenging in the calculation of typical small-molecule excited-state spectra by trajectory-based methods.
Collapse
Affiliation(s)
- Matteo Bonfanti
- Institute of Physical and Theoretical Chemistry , Goethe University Frankfurt , Max-von-Laue-Str. 7 , D-60438 Frankfurt/Main , Germany
| | - Jakob Petersen
- Chemical and Biological Physics Department , Weizmann Institute of Science , 76000 Rehovot , Israel
| | - Pierre Eisenbrandt
- Institute of Physical and Theoretical Chemistry , Goethe University Frankfurt , Max-von-Laue-Str. 7 , D-60438 Frankfurt/Main , Germany
| | - Irene Burghardt
- Institute of Physical and Theoretical Chemistry , Goethe University Frankfurt , Max-von-Laue-Str. 7 , D-60438 Frankfurt/Main , Germany
| | - Eli Pollak
- Chemical and Biological Physics Department , Weizmann Institute of Science , 76000 Rehovot , Israel
| |
Collapse
|
165
|
Jenkins AJ, Spinlove KE, Vacher M, Worth GA, Robb MA. The Ehrenfest method with fully quantum nuclear motion (Qu-Eh): Application to charge migration in radical cations. J Chem Phys 2018; 149:094108. [PMID: 30195291 DOI: 10.1063/1.5038428] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
An algorithm is described for quantum dynamics where an Ehrenfest potential is combined with fully quantum nuclear motion (Quantum-Ehrenfest, Qu-Eh). The method is related to the single-set variational multi-configuration Gaussian approach (vMCG) but has the advantage that only a single quantum chemistry computation is required at each time step since there is only a single time-dependent potential surface. Also shown is the close relationship to the "exact factorization method." The quantum Ehrenfest method is compared with vMCG for study of electron dynamics in a modified bismethylene-adamantane cation system. Illustrative examples of electron-nuclear dynamics are presented for a distorted allene system and for HCCI+ where one has a degenerate Π system.
Collapse
Affiliation(s)
- Andrew J Jenkins
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - K Eryn Spinlove
- Department of Chemistry, University College London, 20, Gordon St., WC1H 0AJ London, United Kingdom
| | - Morgane Vacher
- Department of Chemistry-Ångström, Uppsala University, Lägerhyddsvägen 1, 751 21 Uppsala, Sweden
| | - Graham A Worth
- Department of Chemistry, University College London, 20, Gordon St., WC1H 0AJ London, United Kingdom
| | - Michael A Robb
- Department of Chemistry, Imperial College London, London SW7 2AZ, United Kingdom
| |
Collapse
|
166
|
Mignolet B, Curchod BFE. A walk through the approximations of ab initio multiple spawning. J Chem Phys 2018; 148:134110. [PMID: 29626896 DOI: 10.1063/1.5022877] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Full multiple spawning offers an in principle exact framework for excited-state dynamics, where nuclear wavefunctions in different electronic states are represented by a set of coupled trajectory basis functions that follow classical trajectories. The couplings between trajectory basis functions can be approximated to treat molecular systems, leading to the ab initio multiple spawning method which has been successfully employed to study the photochemistry and photophysics of several molecules. However, a detailed investigation of its approximations and their consequences is currently missing in the literature. In this work, we simulate the explicit photoexcitation and subsequent excited-state dynamics of a simple system, LiH, and we analyze (i) the effect of the ab initio multiple spawning approximations on different observables and (ii) the convergence of the ab initio multiple spawning results towards numerically exact quantum dynamics upon a progressive relaxation of these approximations. We show that, despite the crude character of the approximations underlying ab initio multiple spawning for this low-dimensional system, the qualitative excited-state dynamics is adequately captured, and affordable corrections can further be applied to ameliorate the coupling between trajectory basis functions.
Collapse
Affiliation(s)
- Benoit Mignolet
- Theoretical Physical Chemistry, UR MolSYS, B6c, University of Liège, B4000 Liège, Belgium
| | - Basile F E Curchod
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| |
Collapse
|
167
|
|
168
|
Joubert-Doriol L, Izmaylov AF. Nonadiabatic Quantum Dynamics with Frozen-Width Gaussians. J Phys Chem A 2018; 122:6031-6042. [DOI: 10.1021/acs.jpca.8b03404] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Loïc Joubert-Doriol
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada
- Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
| | - Artur F. Izmaylov
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada
- Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
| |
Collapse
|
169
|
Crespo-Otero R, Barbatti M. Recent Advances and Perspectives on Nonadiabatic Mixed Quantum–Classical Dynamics. Chem Rev 2018; 118:7026-7068. [DOI: 10.1021/acs.chemrev.7b00577] [Citation(s) in RCA: 301] [Impact Index Per Article: 50.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rachel Crespo-Otero
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom
| | | |
Collapse
|
170
|
Symonds C, Kattirtzi JA, Shalashilin DV. The effect of sampling techniques used in the multiconfigurational Ehrenfest method. J Chem Phys 2018; 148:184113. [DOI: 10.1063/1.5020567] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Affiliation(s)
- C. Symonds
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
| | - J. A. Kattirtzi
- College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, People’s Republic of China
- Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom
| | - D. V. Shalashilin
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
| |
Collapse
|
171
|
Patoz A, Begušić T, Vaníček J. On-the-Fly Ab Initio Semiclassical Evaluation of Absorption Spectra of Polyatomic Molecules beyond the Condon Approximation. J Phys Chem Lett 2018; 9:2367-2372. [PMID: 29652506 DOI: 10.1021/acs.jpclett.8b00827] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
To evaluate vibronic spectra beyond the Condon approximation, we extend the on-the-fly ab initio thawed Gaussian approximation by considering the Herzberg-Teller contribution due to the dependence of the electronic transition dipole moment on nuclear coordinates. The extended thawed Gaussian approximation is tested on electronic absorption spectra of the phenyl radical and benzene; calculated spectra reproduce experimental data and are much more accurate than standard global harmonic approaches, confirming the significance of anharmonicity. Moreover, the extended method provides a tool to quantify the Herzberg-Teller contribution; we show that in the phenyl radical, anharmonicity outweighs the Herzberg-Teller contribution, whereas in benzene, the Herzberg-Teller contribution is essential because the transition is electronically forbidden and the Condon approximation yields a zero spectrum. Surprisingly, both adiabatic harmonic spectra outperform those of the vertical harmonic model, which describes the Franck-Condon region better. Finally, we provide a simple recipe for orientationally averaging spectra, valid beyond the Condon approximation, and a relation among the transition dipole, its gradient, and nonadiabatic coupling vectors.
Collapse
Affiliation(s)
- Aurélien Patoz
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques , Ecole Polytechnique Fédérale de Lausanne (EPFL) , CH-1015 Lausanne , Switzerland
| | - Tomislav Begušić
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques , Ecole Polytechnique Fédérale de Lausanne (EPFL) , CH-1015 Lausanne , Switzerland
| | - Jiří Vaníček
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques , Ecole Polytechnique Fédérale de Lausanne (EPFL) , CH-1015 Lausanne , Switzerland
| |
Collapse
|
172
|
Affiliation(s)
- Michael S. Schuurman
- National Research Council of Canada, Ottawa, Ontario K1A 06A, Canada
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, Ontario K1A 0R6, Canada
| | - Albert Stolow
- National Research Council of Canada, Ottawa, Ontario K1A 06A, Canada
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, Ontario K1A 0R6, Canada
- Department of Physics, University of Ottawa, Ottawa, Ontario K1A 0R6, Canada
| |
Collapse
|
173
|
Fouda AEA, Purnell GI, Besley NA. Simulation of Ultra-Fast Dynamics Effects in Resonant Inelastic X-ray Scattering of Gas-Phase Water. J Chem Theory Comput 2018; 14:2586-2595. [DOI: 10.1021/acs.jctc.8b00211] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Adam E. A. Fouda
- School of Chemistry, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom
| | - Gregory I. Purnell
- School of Chemistry, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom
| | - Nicholas A. Besley
- School of Chemistry, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom
| |
Collapse
|
174
|
Richings GW, Habershon S. MCTDH on-the-fly: Efficient grid-based quantum dynamics without pre-computed potential energy surfaces. J Chem Phys 2018; 148:134116. [DOI: 10.1063/1.5024869] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Gareth W. Richings
- Department of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Scott Habershon
- Department of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry CV4 7AL, United Kingdom
| |
Collapse
|
175
|
Joubert-Doriol L, Izmaylov AF. Variational nonadiabatic dynamics in the moving crude adiabatic representation: Further merging of nuclear dynamics and electronic structure. J Chem Phys 2018; 148:114102. [PMID: 29566517 DOI: 10.1063/1.5020655] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A new methodology of simulating nonadiabatic dynamics using frozen-width Gaussian wavepackets within the moving crude adiabatic representation with the on-the-fly evaluation of electronic structure is presented. The main feature of the new approach is the elimination of any global or local model representation of electronic potential energy surfaces; instead, the electron-nuclear interaction is treated explicitly using the Gaussian integration. As a result, the new scheme does not introduce any uncontrolled approximations. The employed variational principle ensures the energy conservation and leaves the number of electronic and nuclear basis functions as the only parameter determining the accuracy. To assess performance of the approach, a model with two electronic and two nuclear spacial degrees of freedom containing conical intersections between potential energy surfaces has been considered. Dynamical features associated with nonadiabatic transitions and nontrivial geometric (or Berry) phases were successfully reproduced within a limited basis expansion.
Collapse
Affiliation(s)
- Loïc Joubert-Doriol
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada and Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
| | - Artur F Izmaylov
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada and Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
| |
Collapse
|
176
|
Penfold TJ, Gindensperger E, Daniel C, Marian CM. Spin-Vibronic Mechanism for Intersystem Crossing. Chem Rev 2018; 118:6975-7025. [DOI: 10.1021/acs.chemrev.7b00617] [Citation(s) in RCA: 401] [Impact Index Per Article: 66.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Thomas J. Penfold
- Chemistry - School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon-Tyne NE1 7RU, United Kingdom
| | - Etienne Gindensperger
- Laboratoire de Chimie Quantique, Institut de Chimie UMR-7177, CNRS - Université de Strasbourg, 1 Rue Blaise Pascal 67008 Strasbourg, France
| | - Chantal Daniel
- Laboratoire de Chimie Quantique, Institut de Chimie UMR-7177, CNRS - Université de Strasbourg, 1 Rue Blaise Pascal 67008 Strasbourg, France
| | - Christel M. Marian
- Institut für Theoretische Chemie, Heinrich-Heine-Universität Düsseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany
| |
Collapse
|
177
|
Fielding HH, Worth GA. Using time-resolved photoelectron spectroscopy to unravel the electronic relaxation dynamics of photoexcited molecules. Chem Soc Rev 2018; 47:309-321. [PMID: 29168864 DOI: 10.1039/c7cs00627f] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Time-resolved photoelectron spectroscopy measurements combined with quantum chemistry and dynamics calculations allow unprecedented insight into the electronic relaxation mechanisms of photoexcited molecules in the gas-phase. In this Tutorial Review, we explain the essential concepts linking photoelectron spectroscopy measurements with electronic structure and how key features on the potential energy landscape are identified using quantum chemistry and quantum dynamics calculations. We illustrate how time-resolved photoelectron spectroscopy and theory work together using examples ranging in complexity from the prototypical organic molecule benzene to a pyrrole dimer bound by a weak N-Hπ interaction and the green fluorescent protein chromophore.
Collapse
Affiliation(s)
- Helen H Fielding
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK.
| | - Graham A Worth
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK.
| |
Collapse
|
178
|
Affiliation(s)
- Basile F. E. Curchod
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - Todd J. Martínez
- Department of Chemistry and PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| |
Collapse
|
179
|
Rozzi CA, Troiani F, Tavernelli I. Quantum modeling of ultrafast photoinduced charge separation. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018; 30:013002. [PMID: 29047450 DOI: 10.1088/1361-648x/aa948a] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Phenomena involving electron transfer are ubiquitous in nature, photosynthesis and enzymes or protein activity being prominent examples. Their deep understanding thus represents a mandatory scientific goal. Moreover, controlling the separation of photogenerated charges is a crucial prerequisite in many applicative contexts, including quantum electronics, photo-electrochemical water splitting, photocatalytic dye degradation, and energy conversion. In particular, photoinduced charge separation is the pivotal step driving the storage of sun light into electrical or chemical energy. If properly mastered, these processes may also allow us to achieve a better command of information storage at the nanoscale, as required for the development of molecular electronics, optical switching, or quantum technologies, amongst others. In this Topical Review we survey recent progress in the understanding of ultrafast charge separation from photoexcited states. We report the state-of-the-art of the observation and theoretical description of charge separation phenomena in the ultrafast regime mainly focusing on molecular- and nano-sized solar energy conversion systems. In particular, we examine different proposed mechanisms driving ultrafast charge dynamics, with particular regard to the role of quantum coherence and electron-nuclear coupling, and link experimental observations to theoretical approaches based either on model Hamiltonians or on first principles simulations.
Collapse
|
180
|
Spinlove KE, Richings GW, Robb MA, Worth GA. Curve crossing in a manifold of coupled electronic states: direct quantum dynamics simulations of formamide. Faraday Discuss 2018; 212:191-215. [PMID: 30238103 DOI: 10.1039/c8fd00090e] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Quantum dynamics simulations are an important tool to evaluate molecular behaviour including the, often key, quantum nature of the system. In this paper we present an algorithm that is able to simulate the time evolution of a molecule after photo-excitation into a manifold of states. The direct dynamics variational multi-configurational Gaussian (DD-vMCG) method circumvents the computational bottleneck problems of traditional grid-based methods by computing the potential energy functions on-the-fly, i.e. only where required. Unlike other commonly used direct dynamics methods, DD-vMCG is fully quantum mechanical. Here, the method is combined with a novel on-the-fly diabatisation scheme to simulate the short-time dynamics of the key molecule formamide and its acid analogue formimidic acid. This is a challenging test system due to the nature and large number of excited states, and eight coupled states are included in the calculations. It is shown that the method is able to provide unbiased information on the product channels open after excitation at different energies and demonstrates the potential to be a practical scheme, limited mainly by the quality of the quantum chemistry used to describe the excited states.
Collapse
Affiliation(s)
- K Eryn Spinlove
- Dept. of Chemistry, University College London, 20 Gordon St., London, UK. and School of Chemistry, University of Birmingham, Birmingham, B15 2TT, UK and Dept. of Chemistry, Imperial College London, London, SW7 2AZ, UK
| | - Gareth W Richings
- Dept. of Chemistry, University of Warwick, Gibbet Hill, Coventry, CV4 7AL, UK
| | - Michael A Robb
- Dept. of Chemistry, Imperial College London, London, SW7 2AZ, UK
| | - Graham A Worth
- Dept. of Chemistry, University College London, 20 Gordon St., London, UK.
| |
Collapse
|
181
|
Freixas VM, Fernandez-Alberti S, Makhov DV, Tretiak S, Shalashilin D. An ab initio multiple cloning approach for the simulation of photoinduced dynamics in conjugated molecules. Phys Chem Chem Phys 2018; 20:17762-17772. [DOI: 10.1039/c8cp02321b] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Multidimensional wave function: a superposition of Gaussian coherent states guided by Ehrenfest trajectories suited to clone and swap their electronic amplitudes.
Collapse
Affiliation(s)
| | | | - Dmitry V. Makhov
- School of Chemistry
- University of Leeds
- Leeds LS2 9JT
- UK
- School of Mathematics
| | - Sergei Tretiak
- Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT)
- Los Alamos National Laboratory
- Los Alamos
- USA
| | | |
Collapse
|
182
|
Kovac PA, Cina JA. Mixed quantum/semiclassical wave-packet dynamical method for condensed-phase molecular spectroscopy signals. J Chem Phys 2017; 147:224112. [DOI: 10.1063/1.5003386] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Philip A. Kovac
- Department of Chemistry and Biochemistry, and Oregon Center for Optical, Molecular, and Quantum Science, University of Oregon, Eugene, Oregon 97403, USA
| | - Jeffrey A. Cina
- Department of Chemistry and Biochemistry, and Oregon Center for Optical, Molecular, and Quantum Science, University of Oregon, Eugene, Oregon 97403, USA
| |
Collapse
|
183
|
Chen L, Borrelli R, Zhao Y. Dynamics of Coupled Electron–Boson Systems with the Multiple Davydov D1 Ansatz and the Generalized Coherent State. J Phys Chem A 2017; 121:8757-8770. [DOI: 10.1021/acs.jpca.7b07069] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Lipeng Chen
- Division
of Materials Science, Nanyang Technological University, 639798, Singapore
| | - Raffaele Borrelli
- Department
of Agricultural, Forestry and Food Science, Universitá di Torino, I-10095 Grugliasco, Turin, Italy
| | - Yang Zhao
- Division
of Materials Science, Nanyang Technological University, 639798, Singapore
| |
Collapse
|
184
|
Karandashev K, Xu ZH, Meuwly M, Vaníček J, Richardson JO. Kinetic isotope effects and how to describe them. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2017; 4:061501. [PMID: 29282447 PMCID: PMC5729036 DOI: 10.1063/1.4996339] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2017] [Accepted: 08/23/2017] [Indexed: 06/01/2023]
Abstract
We review several methods for computing kinetic isotope effects in chemical reactions including semiclassical and quantum instanton theory. These methods describe both the quantization of vibrational modes as well as tunneling and are applied to the ⋅H + H2 and ⋅H + CH4 reactions. The absolute rate constants computed with the semiclassical instanton method both using on-the-fly electronic structure calculations and fitted potential-energy surfaces are also compared directly with exact quantum dynamics results. The error inherent in the instanton approximation is found to be relatively small and similar in magnitude to that introduced by using fitted surfaces. The kinetic isotope effect computed by the quantum instanton is even more accurate, and although it is computationally more expensive, the efficiency can be improved by path-integral acceleration techniques. We also test a simple approach for designing potential-energy surfaces for the example of proton transfer in malonaldehyde. The tunneling splittings are computed, and although they are found to deviate from experimental results, the ratio of the splitting to that of an isotopically substituted form is in much better agreement. We discuss the strengths and limitations of the potential-energy surface and based on our findings suggest ways in which it can be improved.
Collapse
Affiliation(s)
- Konstantin Karandashev
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Zhen-Hao Xu
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland
| | - Markus Meuwly
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland
| | - Jiří Vaníček
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jeremy O Richardson
- Laboratory of Physical Chemistry, Department of Chemistry and Applied Biosciences, Eidgenössische Technische Hochschule Zürich (ETHZ), CH-8093 Zürich, Switzerland
| |
Collapse
|
185
|
Gozem S, Luk HL, Schapiro I, Olivucci M. Theory and Simulation of the Ultrafast Double-Bond Isomerization of Biological Chromophores. Chem Rev 2017; 117:13502-13565. [DOI: 10.1021/acs.chemrev.7b00177] [Citation(s) in RCA: 175] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Samer Gozem
- Department
of Chemistry, Georgia State University, Atlanta, Georgia 30302, United States
| | - Hoi Ling Luk
- Chemistry
Department, Bowling Green State University, Overman Hall, Bowling Green, Ohio 43403, United States
| | - Igor Schapiro
- Fritz
Haber Center for Molecular Dynamics, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - Massimo Olivucci
- Chemistry
Department, Bowling Green State University, Overman Hall, Bowling Green, Ohio 43403, United States
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università di Siena, via A. Moro
2, 53100 Siena, Italy
| |
Collapse
|
186
|
Kowalewski M, Fingerhut BP, Dorfman KE, Bennett K, Mukamel S. Simulating Coherent Multidimensional Spectroscopy of Nonadiabatic Molecular Processes: From the Infrared to the X-ray Regime. Chem Rev 2017; 117:12165-12226. [DOI: 10.1021/acs.chemrev.7b00081] [Citation(s) in RCA: 81] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Markus Kowalewski
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, California 92697-2025, United States
| | - Benjamin P. Fingerhut
- Max-Born-Institut für Nichtlineare Optik und Kurzzeitspektroskopie, D-12489 Berlin, Germany
| | - Konstantin E. Dorfman
- State
Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, China
| | - Kochise Bennett
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, California 92697-2025, United States
| | - Shaul Mukamel
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, California 92697-2025, United States
| |
Collapse
|
187
|
Richings GW, Habershon S. Direct grid-based quantum dynamics on propagated diabatic potential energy surfaces. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.01.063] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
188
|
|
189
|
A b initio quantum direct dynamics simulations of ultrafast photochemistry with Multiconfigurational Ehrenfest approach. Chem Phys 2017. [DOI: 10.1016/j.chemphys.2017.04.003] [Citation(s) in RCA: 79] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
190
|
Richings GW, Habershon S. Direct Quantum Dynamics Using Grid-Based Wave Function Propagation and Machine-Learned Potential Energy Surfaces. J Chem Theory Comput 2017; 13:4012-4024. [DOI: 10.1021/acs.jctc.7b00507] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Gareth W. Richings
- Department of Chemistry and
Centre for Scientific Computing, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Scott Habershon
- Department of Chemistry and
Centre for Scientific Computing, University of Warwick, Coventry CV4 7AL, United Kingdom
| |
Collapse
|
191
|
Larsson HR, Tannor DJ. Dynamical pruning of the multiconfiguration time-dependent Hartree (DP-MCTDH) method: An efficient approach for multidimensional quantum dynamics. J Chem Phys 2017; 147:044103. [DOI: 10.1063/1.4993219] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- H. R. Larsson
- Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel, 24098 Kiel, Germany
- Department of Chemical Physics, Weizmann Institute of Science, 76100 Rehovot, Israel
| | - D. J. Tannor
- Department of Chemical Physics, Weizmann Institute of Science, 76100 Rehovot, Israel
| |
Collapse
|
192
|
Fundamental Limits on Spatial Resolution in Ultrafast X-ray Diffraction. APPLIED SCIENCES-BASEL 2017. [DOI: 10.3390/app7060534] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
|
193
|
Izmaylov AF, Joubert-Doriol L. Quantum Nonadiabatic Cloning of Entangled Coherent States. J Phys Chem Lett 2017; 8:1793-1797. [PMID: 28375623 DOI: 10.1021/acs.jpclett.7b00596] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We propose a systematic approach to the basis set extension for nonadiabatic dynamics of entangled combination of nuclear coherent states (CSs) evolving according to the time-dependent variational principle (TDVP). The TDVP provides a rigorous framework for fully quantum nonadiabatic dynamics of closed systems; however, the quality of results strongly depends on available basis functions. Starting with a single nuclear CS replicated vertically on all electronic states, our approach clones this function when replicas of the CS on different electronic states experience increasingly different forces. Created clones move away from each other (decohere), extending the basis set. To determine a moment for cloning, we introduce generalized forces based on derivatives that maximally contribute to a variation of the total quantum action and thus account for entanglement of all basis functions.
Collapse
Affiliation(s)
- Artur F Izmaylov
- Department of Physical and Environmental Sciences, University of Toronto Scarborough , Toronto, Ontario M1C 1A4, Canada
- Chemical Physics Theory Group, Department of Chemistry, University of Toronto , Toronto, Ontario M5S 3H6, Canada
| | - Loïc Joubert-Doriol
- Department of Physical and Environmental Sciences, University of Toronto Scarborough , Toronto, Ontario M1C 1A4, Canada
- Chemical Physics Theory Group, Department of Chemistry, University of Toronto , Toronto, Ontario M5S 3H6, Canada
| |
Collapse
|
194
|
Hirshberg B, Sagiv L, Gerber RB. Approximate Quantum Dynamics using Ab Initio Classical Separable Potentials: Spectroscopic Applications. J Chem Theory Comput 2017; 13:982-991. [DOI: 10.1021/acs.jctc.6b01129] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Barak Hirshberg
- Institute
of Chemistry and the Fritz Haber Center for Molecular Dynamics, The Hebrew University, Jerusalem 9190401, Israel
| | - Lior Sagiv
- Institute
of Chemistry and the Fritz Haber Center for Molecular Dynamics, The Hebrew University, Jerusalem 9190401, Israel
| | - R. Benny Gerber
- Institute
of Chemistry and the Fritz Haber Center for Molecular Dynamics, The Hebrew University, Jerusalem 9190401, Israel
- Department
of Chemistry, University of California, Irvine, California 92697, United States
| |
Collapse
|
195
|
Vacher M, Bearpark MJ, Robb MA, Malhado JP. Electron Dynamics upon Ionization of Polyatomic Molecules: Coupling to Quantum Nuclear Motion and Decoherence. PHYSICAL REVIEW LETTERS 2017; 118:083001. [PMID: 28282194 DOI: 10.1103/physrevlett.118.083001] [Citation(s) in RCA: 81] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2016] [Indexed: 05/23/2023]
Abstract
Knowledge about the electronic motion in molecules is essential for our understanding of chemical reactions and biological processes. The advent of attosecond techniques opens up the possibility to induce electronic motion, observe it in real time, and potentially steer it. A fundamental question remains the factors influencing electronic decoherence and the role played by nuclear motion in this process. Here, we simulate the dynamics upon ionization of the polyatomic molecules paraxylene and modified bismethylene-adamantane, with a quantum mechanical treatment of both electron and nuclear dynamics using the direct dynamics variational multiconfigurational Gaussian method. Our simulations give new important physical insights about the expected decoherence process. We have shown that the decoherence of electron dynamics happens on the time scale of a few femtoseconds, with the interplay of different mechanisms: the dephasing is responsible for the fast decoherence while the nuclear overlap decay may actually help maintain it and is responsible for small revivals.
Collapse
Affiliation(s)
- Morgane Vacher
- Department of Chemistry-Ångström, Uppsala University, Uppsala 75120, Sweden and Department of Chemistry, Imperial College London, London SW7 2AZ, United Kingdom
| | - Michael J Bearpark
- Department of Chemistry, Imperial College London, London SW7 2AZ, United Kingdom
| | - Michael A Robb
- Department of Chemistry, Imperial College London, London SW7 2AZ, United Kingdom
| | - João Pedro Malhado
- Department of Chemistry, Imperial College London, London SW7 2AZ, United Kingdom
| |
Collapse
|
196
|
Penfold TJ. Accelerating direct quantum dynamics using graphical processing units. Phys Chem Chem Phys 2017; 19:19601-19608. [DOI: 10.1039/c7cp01473b] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
The direct dynamics variational multi-configurational Gaussian (DD-vMCG) method is combined with electronic structure calculations accelerated by Graphical Processing Units (GPUs). This is used to identify GPU acceleration will have a significant effect for both ground and excited state simulations.
Collapse
Affiliation(s)
- T. J. Penfold
- School of Chemistry
- Newcastle University
- Newcastle upon Tyne
- UK
| |
Collapse
|
197
|
Moreno Carrascosa A, Kirrander A. Ab initio calculation of inelastic scattering. Phys Chem Chem Phys 2017; 19:19545-19553. [DOI: 10.1039/c7cp02054f] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
We calculate nonresonant inelastic electron and X-ray scattering cross sections for bound-to-bound transitions in atoms and molecules from ab initio electronic wavefunctions.
Collapse
Affiliation(s)
| | - Adam Kirrander
- EaStCHEM
- School of Chemistry
- University of Edinburgh
- EH9 3FJ Edinburgh
- UK
| |
Collapse
|
198
|
Using quantum dynamics simulations to follow the competition between charge migration and charge transfer in polyatomic molecules. Chem Phys 2017. [DOI: 10.1016/j.chemphys.2016.10.007] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
199
|
Marquetand P, Nogueira JJ, Mai S, Plasser F, González L. Challenges in Simulating Light-Induced Processes in DNA. Molecules 2016. [PMCID: PMC6155660 DOI: 10.3390/molecules22010049] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
In this contribution, we give a perspective on the main challenges in performing theoretical simulations of photoinduced phenomena within DNA and its molecular building blocks. We distinguish the different tasks that should be involved in the simulation of a complete DNA strand subject to UV irradiation: (i) stationary quantum chemical computations; (ii) the explicit description of the initial excitation of DNA with light; (iii) modeling the nonadiabatic excited state dynamics; (iv) simulation of the detected experimental observable; and (v) the subsequent analysis of the respective results. We succinctly describe the methods that are currently employed in each of these steps. While for each of them, there are different approaches with different degrees of accuracy, no feasible method exists to tackle all problems at once. Depending on the technique or combination of several ones, it can be problematic to describe the stacking of nucleobases, bond breaking and formation, quantum interferences and tunneling or even simply to characterize the involved wavefunctions. It is therefore argued that more method development and/or the combination of different techniques are urgently required. It is essential also to exercise these new developments in further studies on DNA and subsystems thereof, ideally comprising simulations of all of the different components that occur in the corresponding experiments.
Collapse
|
200
|
Borrelli R, Gelin MF. The Generalized Coherent State ansatz: Application to quantum electron-vibrational dynamics. Chem Phys 2016. [DOI: 10.1016/j.chemphys.2016.05.013] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|