Dominant local binary patterns for texture classification

A noise-aware coding scheme for texture classification

Texture-based analysis of images is a very common and much discussed issue in the fields of computer vision and image processing. Several methods have already been proposed to codify texture micro-patterns (texlets) in images. Most of these methods perform well when a given image is noise-free, but real world images contain different types of signal-independent as well as signal-dependent noises originated from different sources, even from the camera sensor itself. Hence, it is necessary to differentiate false textures appearing due to the noises, and thus, to achieve a reliable representation of texlets. In this proposal, we define an adaptive noise band (ANB) to approximate the amount of noise contamination around a pixel up to a certain extent. Based on this ANB, we generate reliable codes named noise tolerant ternary pattern (NTTP) to represent the texlets in an image. Extensive experiments on several datasets from renowned texture databases, such as the Outex and the Brodatz database, show that NTTP performs much better than the state-of-the-art methods.

Directional binary wavelet patterns for biomedical image indexing and retrieval

A new algorithm for medical image retrieval is presented in the paper. An 8-bit grayscale image is divided into eight binary bit-planes, and then binary wavelet transform (BWT) which is similar to the lifting scheme in real wavelet transform (RWT) is performed on each bitplane to extract the multi-resolution binary images. The local binary pattern (LBP) features are extracted from the resultant BWT sub-bands. Three experiments have been carried out for proving the effectiveness of the proposed algorithm. Out of which two are meant for medical image retrieval and one for face retrieval. It is further mentioned that the database considered for three experiments are OASIS magnetic resonance imaging (MRI) database, NEMA computer tomography (CT) database and PolyU-NIRFD face database. The results after investigation shows a significant improvement in terms of their evaluation measures as compared to LBP and LBP with Gabor transform.

High performance set of PseAAC and sequence based descriptors for protein classification

The study of reliable automatic systems for protein classification is important for several domains, including finding novel drugs and vaccines. The last decade has seen a number of advances in the development of reliable systems for classifying proteins. Of particular interest has been the exploration of new methods for extracting features from a protein that enhance classification for a given problem. Most methods developed to date, however, have been evaluated in only one or two application areas. Methods have not been explored that generalize well across a number of application areas and datasets. The aim of this study is to find a general method, or an ensemble of methods, that works well on different protein classification datasets and problems. Towards this end, we evaluate several feature extraction approaches for representing proteins starting from their amino acid sequence as well as different feature descriptor combinations using an ensemble of classifiers (support vector machines). In our experiments, more than ten different protein descriptors are compared using nine different datasets. We develop our system using a blind testing protocol, where the parameters of the system are optimized using one dataset and then validated using the other datasets (and so on for each dataset). Although different stand-alone classifiers work well on some datasets and not on others, we have discovered that fusion among different methods obtains a good performance across all the tested datasets, especially when using the weighted sum rule. Included in our feature descriptor combinations is the introduction of two new descriptors, one based on wavelets and the other based on amino acid groups. Using our system, both outperform their standard implementations. We also consider as a baseline the simple amino acid composition (AC) and dipeptide composition (2G), since they have been widely used for protein classification. Our proposed method outperforms AC and 2G.

Texture classification by modeling joint distributions of local patterns with gaussian mixtures

Texture classification generally requires the analysis of patterns in local pixel neighborhoods. Statistically, the underlying processes are comprehensively described by their joint probability density functions (jPDFs). Even for small neighborhoods, however, stable estimation of jPDFs by joint histograms (jHSTs) is often infeasible, since the number of entries in the jHST exceeds by far the number of pixels in a typical texture region. Moreover, evaluation of distance functions between jHSTs is often computationally prohibitive. Practically, the number of entries in a jHST is therefore reduced by considering only two-pixel patterns, leading to 2D-jHSTs known as cooccurrence matrices, or by quantization of the gray levels in local patterns to only two gray levels, yielding local binary patterns (LBPs). Both approaches result in a loss of information. We introduce here a framework for supervised texture classification which reduces or avoids this information loss. Local texture neighborhoods are first filtered by a filter bank. Without further quantization, the jPDF of the filter responses is then described parametrically by gaussian mixture models (GMMs). We show that the parameters of the GMMs can be reliably estimated from small image regions. Moreover, distances between the thus modelled jPDFs of different texture patterns can be computed efficiently in closed form from their model parameters. We furthermore extend this texture descriptor to achieve full invariance to rotation. We evaluate the framework for different filter banks on the Brodatz texture set. We first show that combining the LBP difference filters with the GMM-based density estimator outperforms the classical LBP approach and its codebook extensions. When replacing these-rather elementary-difference filters by the wavelet frame transform (WFT), the performance of the framework on all 111 Brodatz textures exceeds the one obtained more recently by spin image and RIFT descriptors by Lazebnik et al.

A completed modeling of local binary pattern operator for texture classification

In this correspondence, a completed modeling of the local binary pattern (LBP) operator is proposed and an associated completed LBP (CLBP) scheme is developed for texture classification. A local region is represented by its center pixel and a local difference sign-magnitude transform (LDSMT). The center pixels represent the image gray level and they are converted into a binary code, namely CLBP-Center (CLBP_C), by global thresholding. LDSMT decomposes the image local differences into two complementary components: the signs and the magnitudes, and two operators, namely CLBP-Sign (CLBP_S) and CLBP-Magnitude (CLBP_M), are proposed to code them. The traditional LBP is equivalent to the CLBP_S part of CLBP, and we show that CLBP_S preserves more information of the local structure than CLBP_M, which explains why the simple LBP operator can extract the texture features reasonably well. By combining CLBP_S, CLBP_M, and CLBP_C features into joint or hybrid distributions, significant improvement can be made for rotation invariant texture classification.

Protein classification using texture descriptors extracted from the protein backbone image

In this work, we propose a method for protein classification that combines different texture descriptors extracted from the 2-D distance matrix obtained from the 3-D tertiary structure of a given protein. Instead of considering all atoms in the protein, the distance matrix is calculated by considering only those atoms that belong to the protein backbone. The positive results reported in this paper offer further experimental confirmation that the distance matrix contains sufficient information for describing a protein. Moreover, we show that combining features extracted from the primary structure with features extracted from the distance matrix increases the performance of our classification system. We demonstrate this finding by comparing the performance of an ensemble of classifiers that uses the combined features. The classifiers used in our experiments are support vector machines and random subspace of support vector machines. The experimental results, validated using three different datasets (protein fold recognition, DNA-binding proteins recognition, biological processes, and molecular functions recognition) along with different texture feature extraction methods (variants of local binary patterns, Radon feature transform based approaches, and Haralick descriptors) demonstrate the effectiveness of the proposed approach. Particularly interesting are the results in the classification of 27 types of structural properties: our proposed approach achieves significant improvement compared with other reported methods.