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For: Wu S, Skolnick J, Zhang Y. Ab initio modeling of small proteins by iterative TASSER simulations. BMC Biol 2007;5:17. [PMID: 17488521 PMCID: PMC1878469 DOI: 10.1186/1741-7007-5-17] [Citation(s) in RCA: 341] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2006] [Accepted: 05/08/2007] [Indexed: 11/10/2022]  Open
Number Cited by Other Article(s)
151
Liu Y, Zeng J, Gong H. Improving the orientation-dependent statistical potential using a reference state. Proteins 2014;82:2383-93. [DOI: 10.1002/prot.24600] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2014] [Revised: 04/30/2014] [Accepted: 05/05/2014] [Indexed: 12/23/2022]
152
Gupta CL, Akhtar S, Bajpai P. In silico protein modeling: possibilities and limitations. EXCLI JOURNAL 2014;13:513-5. [PMID: 26417278 PMCID: PMC4467082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Download PDF] [Subscribe] [Scholar Register] [Received: 04/25/2014] [Accepted: 05/08/2014] [Indexed: 11/13/2022]
153
Nuclear trafficking of the HIV-1 pre-integration complex depends on the ADAM10 intracellular domain. Virology 2014;454-455:60-6. [PMID: 24725932 DOI: 10.1016/j.virol.2014.02.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Revised: 11/06/2013] [Accepted: 02/06/2014] [Indexed: 12/25/2022]
154
Ghosh S, Vishveshwara S. Ranking the quality of protein structure models using sidechain based network properties. F1000Res 2014;3:17. [PMID: 25580218 PMCID: PMC4038323 DOI: 10.12688/f1000research.3-17.v1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 01/20/2014] [Indexed: 01/31/2023]  Open
155
In silico prediction of structure and functions for some proteins of male-specific region of the human Y chromosome. Interdiscip Sci 2014;5:258-69. [PMID: 24402818 DOI: 10.1007/s12539-013-0178-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2012] [Revised: 09/03/2012] [Accepted: 11/08/2012] [Indexed: 10/25/2022]
156
Sivakumar S, Niranjali Devaraj S. Tertiary structure prediction and identification of druggable pocket in the cancer biomarker - Osteopontin-c. J Diabetes Metab Disord 2014;13:13. [PMID: 24401206 PMCID: PMC3922830 DOI: 10.1186/2251-6581-13-13] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/22/2013] [Accepted: 12/22/2013] [Indexed: 12/22/2022]
157
Cloning, over expression and functional attributes of serine proteases from Oceanobacillus iheyensis O.M.A18 and Haloalkaliphilic bacterium O.M.E12. Process Biochem 2014. [DOI: 10.1016/j.procbio.2013.07.009] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
158
Seniya C, Khan GJ, Misra R, Vyas V, Kaushik S. In-silico modelling and identification of a possible inhibitor of H1N1 virus. ASIAN PACIFIC JOURNAL OF TROPICAL DISEASE 2014. [DOI: 10.1016/s2222-1808(14)60492-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
159
Tavares LS, Silva CSF, de Souza VC, da Silva VL, Diniz CG, Santos MO. Strategies and molecular tools to fight antimicrobial resistance: resistome, transcriptome, and antimicrobial peptides. Front Microbiol 2013;4:412. [PMID: 24427156 PMCID: PMC3876575 DOI: 10.3389/fmicb.2013.00412] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2013] [Accepted: 12/15/2013] [Indexed: 11/13/2022]  Open
160
Xue Z, Xu D, Wang Y, Zhang Y. ThreaDom: extracting protein domain boundary information from multiple threading alignments. Bioinformatics 2013;29:i247-56. [PMID: 23812990 PMCID: PMC3694664 DOI: 10.1093/bioinformatics/btt209] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
161
Shen Y, Picord G, Guyon F, Tuffery P. Detecting protein candidate fragments using a structural alphabet profile comparison approach. PLoS One 2013;8:e80493. [PMID: 24303019 PMCID: PMC3841190 DOI: 10.1371/journal.pone.0080493] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2013] [Accepted: 10/03/2013] [Indexed: 01/28/2023]  Open
162
Chakraborty S, Venkatramani R, Rao BJ, Asgeirsson B, Dandekar AM. The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment. F1000Res 2013;2:243. [PMID: 25506420 PMCID: PMC4257144 DOI: 10.12688/f1000research.2-243.v1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/16/2014] [Indexed: 02/10/2024]  Open
163
Mitra P, Shultis D, Brender JR, Czajka J, Marsh D, Gray F, Cierpicki T, Zhang Y. An evolution-based approach to De Novo protein design and case study on Mycobacterium tuberculosis. PLoS Comput Biol 2013;9:e1003298. [PMID: 24204234 PMCID: PMC3812052 DOI: 10.1371/journal.pcbi.1003298] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Accepted: 09/09/2013] [Indexed: 01/31/2023]  Open
164
Mirzaie M, Sadeghi M. Delaunay-based nonlocal interactions are sufficient and accurate in protein fold recognition. Proteins 2013;82:415-23. [DOI: 10.1002/prot.24407] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Revised: 08/12/2013] [Accepted: 08/21/2013] [Indexed: 01/05/2023]
165
Chakraborty S, Venkatramani R, Rao BJ, Asgeirsson B, Dandekar AM. Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms. F1000Res 2013;2:211. [PMID: 24555103 PMCID: PMC3892923 DOI: 10.12688/f1000research.2-211.v1#sthash.lfll9fko.snt845h1.dpuf] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 12/16/2013] [Indexed: 06/29/2024]  Open
166
Chakraborty S, Venkatramani R, Rao BJ, Asgeirsson B, Dandekar AM. Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms. F1000Res 2013;2:211. [PMID: 24555103 DOI: 10.12688/f1000research.2-211.v1] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 10/10/2013] [Indexed: 01/22/2023]  Open
167
Plazinska A, Kolinski M, Wainer IW, Jozwiak K. Molecular interactions between fenoterol stereoisomers and derivatives and the β₂-adrenergic receptor binding site studied by docking and molecular dynamics simulations. J Mol Model 2013;19:4919-30. [PMID: 24043542 PMCID: PMC3825559 DOI: 10.1007/s00894-013-1981-y] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2013] [Accepted: 08/21/2013] [Indexed: 11/26/2022]
168
He Z, Alazmi M, Zhang J, Xu D. Protein structural model selection by combining consensus and single scoring methods. PLoS One 2013;8:e74006. [PMID: 24023923 PMCID: PMC3759460 DOI: 10.1371/journal.pone.0074006] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2013] [Accepted: 07/26/2013] [Indexed: 01/28/2023]  Open
169
Zhang Y. Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10. Proteins 2013;82 Suppl 2:175-87. [PMID: 23760925 DOI: 10.1002/prot.24341] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Revised: 05/15/2013] [Accepted: 05/23/2013] [Indexed: 11/09/2022]
170
Taft MH, Behrmann E, Munske-Weidemann LC, Thiel C, Raunser S, Manstein DJ. Functional characterization of human myosin-18A and its interaction with F-actin and GOLPH3. J Biol Chem 2013;288:30029-30041. [PMID: 23990465 DOI: 10.1074/jbc.m113.497180] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
171
Protein structure validation and identification from unassigned residual dipolar coupling data using 2D-PDPA. Molecules 2013;18:10162-88. [PMID: 23973992 PMCID: PMC4090686 DOI: 10.3390/molecules180910162] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2013] [Revised: 08/10/2013] [Accepted: 08/13/2013] [Indexed: 11/22/2022]  Open
172
al-Rashida M, Raza R, Abbas G, Shah MS, Kostakis GE, Lecka J, Sévigny J, Muddassar M, Papatriantafyllopoulou C, Iqbal J. Identification of novel chromone based sulfonamides as highly potent and selective inhibitors of alkaline phosphatases. Eur J Med Chem 2013;66:438-49. [DOI: 10.1016/j.ejmech.2013.06.015] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2013] [Revised: 06/07/2013] [Accepted: 06/10/2013] [Indexed: 11/26/2022]
173
Anjum S, Afzal MS, Ahmad T, Aslam B, Waheed Y, Shafi T, Qadri I. Mutations in the STAT1‑interacting domain of the hepatitis C virus core protein modulate the response to antiviral therapy. Mol Med Rep 2013;8:487-92. [PMID: 23799612 DOI: 10.3892/mmr.2013.1541] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2012] [Accepted: 01/31/2013] [Indexed: 02/07/2023]  Open
174
Choi G, Lee J, Ji JY, Woo J, Kang NS, Cho SY, Kim HR, Ha JD, Han SY. Discovery of a potent small molecule SIRT1/2 inhibitor with anticancer effects. Int J Oncol 2013;43:1205-11. [PMID: 23900402 DOI: 10.3892/ijo.2013.2035] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2013] [Accepted: 07/02/2013] [Indexed: 11/05/2022]  Open
175
Wang H, He Z, Zhang C, Zhang L, Xu D. Transmembrane protein alignment and fold recognition based on predicted topology. PLoS One 2013;8:e69744. [PMID: 23894534 PMCID: PMC3716705 DOI: 10.1371/journal.pone.0069744] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2012] [Accepted: 06/15/2013] [Indexed: 11/18/2022]  Open
176
A novel hepacivirus with an unusually long and intrinsically disordered NS5A protein in a wild Old World primate. J Virol 2013;87:8971-81. [PMID: 23740998 DOI: 10.1128/jvi.00888-13] [Citation(s) in RCA: 77] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
177
Cong S, Ma XT, Li YX, Wang JF. Structural Basis for the Mutation-Induced Dysfunction of Human CYP2J2: A Computational Study. J Chem Inf Model 2013;53:1350-7. [DOI: 10.1021/ci400003p] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
178
Brasil CRS, Delbem ACB, da Silva FLB. Multiobjective evolutionary algorithm with many tables for purelyab initioprotein structure prediction. J Comput Chem 2013;34:1719-34. [DOI: 10.1002/jcc.23315] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2012] [Revised: 02/26/2013] [Accepted: 04/07/2013] [Indexed: 11/10/2022]
179
Zhang Y, Skolnick J. Segment assembly, structure alignment and iterative simulation in protein structure prediction. BMC Biol 2013;11:44. [PMID: 23587325 PMCID: PMC3626933 DOI: 10.1186/1741-7007-11-44] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2013] [Accepted: 04/12/2013] [Indexed: 11/10/2022]  Open
180
Johansson MU, Zoete V, Guex N. Recurrent structural motifs in non-homologous protein structures. Int J Mol Sci 2013;14:7795-814. [PMID: 23574940 PMCID: PMC3645717 DOI: 10.3390/ijms14047795] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2013] [Revised: 03/27/2013] [Accepted: 04/01/2013] [Indexed: 11/18/2022]  Open
181
Wang Y, Sun M, Bao H, Zhang Q, Guo D. Effective identification of bacterial type III secretion signals using joint element features. PLoS One 2013;8:e59754. [PMID: 23593149 PMCID: PMC3617162 DOI: 10.1371/journal.pone.0059754] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2012] [Accepted: 02/18/2013] [Indexed: 11/18/2022]  Open
182
Mao Y, Tan F, Yan SG, Wu GX, Qiao CL, Zhang WX, Cui F. High-throughput genotyping of single-nucleotide polymorphisms in ace-1 gene of mosquitoes using MALDI-TOF mass spectrometry. INSECT SCIENCE 2013;20:167-174. [PMID: 23955857 DOI: 10.1111/j.1744-7917.2012.01520.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
183
Pimenta J, Sardinha J, Marques CC, Domingos A, Baptista MC, Barbas JP, Martins IC, Mesquita P, Pessa P, Soares R, Viegas A, Cabrita E, Horta EMA, Fontes CA, Prates AMJ, Pereira MLNR. Inhibition of ovine in vitro fertilization by anti-Prt antibody: hypothetical model for Prt/ZP interaction. Reprod Biol Endocrinol 2013;11:25. [PMID: 23531155 PMCID: PMC3617107 DOI: 10.1186/1477-7827-11-25] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/13/2012] [Accepted: 03/18/2013] [Indexed: 01/13/2023]  Open
184
Jamroz M, Kolinski A. ClusCo: clustering and comparison of protein models. BMC Bioinformatics 2013;14:62. [PMID: 23433004 PMCID: PMC3645956 DOI: 10.1186/1471-2105-14-62] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2012] [Accepted: 02/17/2013] [Indexed: 12/21/2022]  Open
185
A metagenomic alkaline protease from saline habitat: Cloning, over-expression and functional attributes. Int J Biol Macromol 2013. [DOI: 10.1016/j.ijbiomac.2012.10.032] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
186
McGlynn SE, Boyd ES, Peters JW, Orphan VJ. Classifying the metal dependence of uncharacterized nitrogenases. Front Microbiol 2013;3:419. [PMID: 23440025 PMCID: PMC3578447 DOI: 10.3389/fmicb.2012.00419] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2012] [Accepted: 11/20/2012] [Indexed: 11/13/2022]  Open
187
Computational design of glutamate dehydrogenase in Bacillus subtilis natto. J Mol Model 2013;19:1919-27. [PMID: 23338837 DOI: 10.1007/s00894-013-1755-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2012] [Accepted: 01/02/2013] [Indexed: 10/27/2022]
188
Zhou J, Wishart DS. An improved method to detect correct protein folds using partial clustering. BMC Bioinformatics 2013;14:11. [PMID: 23323835 PMCID: PMC3626854 DOI: 10.1186/1471-2105-14-11] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2012] [Accepted: 12/13/2012] [Indexed: 11/23/2022]  Open
189
Seniya C, Mishra H, Yadav A, Sagar N, Chaturvedi B, Uchadia K, Wadhwa G. Antiviral potential of 4-hydroxypanduratin A, secondary metabolite of Fingerroot, Boesenbergia pandurata (Schult.), towards Japanese Encephalitis virus NS2B/NS3 protease. Bioinformation 2013;9:54-60. [PMID: 23390345 PMCID: PMC3563417 DOI: 10.6026/97320630009054] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2012] [Revised: 12/21/2012] [Accepted: 12/22/2012] [Indexed: 11/29/2022]  Open
190
Zhang J, Xu D. Fast algorithm for population-based protein structural model analysis. Proteomics 2013. [PMID: 23184517 DOI: 10.1002/pmic.201200334] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
191
Chakraborty S, Venkatramani R, Rao BJ, Asgeirsson B, Dandekar AM. The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment. F1000Res 2013;2:243. [PMID: 25506420 PMCID: PMC4257144 DOI: 10.12688/f1000research.2-243.v3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/16/2014] [Indexed: 12/23/2022]  Open
192
Chatterjee S, Ghosh S, Vishveshwara S. Network properties of decoys and CASP predicted models: a comparison with native protein structures. MOLECULAR BIOSYSTEMS 2013;9:1774-88. [DOI: 10.1039/c3mb70157c] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
193
In silico studies of C 3 metabolic pathway proteins of wheat (Triticum aestivum). BIOMED RESEARCH INTERNATIONAL 2012;2013:294759. [PMID: 23484105 PMCID: PMC3591116 DOI: 10.1155/2013/294759] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/23/2012] [Revised: 11/10/2012] [Accepted: 11/26/2012] [Indexed: 11/26/2022]
194
Fan YX, Zhang Y, Shen HB. LabCaS: labeling calpain substrate cleavage sites from amino acid sequence using conditional random fields. Proteins 2012. [PMID: 23180633 DOI: 10.1002/prot.24217] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
195
Xu D, Zhang Y. Toward optimal fragment generations for ab initio protein structure assembly. Proteins 2012;81:229-39. [PMID: 22972754 DOI: 10.1002/prot.24179] [Citation(s) in RCA: 170] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2012] [Revised: 08/06/2012] [Accepted: 09/03/2012] [Indexed: 01/03/2023]
196
Soto-Liebe K, Méndez MA, Fuenzalida L, Krock B, Cembella A, Vásquez M. PSP toxin release from the cyanobacterium Raphidiopsis brookii D9 (Nostocales) can be induced by sodium and potassium ions. Toxicon 2012;60:1324-34. [PMID: 22983012 DOI: 10.1016/j.toxicon.2012.09.001] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2012] [Revised: 07/11/2012] [Accepted: 09/06/2012] [Indexed: 11/25/2022]
197
Nadeau OW, Lane LA, Xu D, Sage J, Priddy TS, Artigues A, Villar MT, Yang Q, Robinson CV, Zhang Y, Carlson GM. Structure and location of the regulatory β subunits in the (αβγδ)4 phosphorylase kinase complex. J Biol Chem 2012;287:36651-61. [PMID: 22969083 DOI: 10.1074/jbc.m112.412874] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
198
Zhang N, Feng Y, Gao S, Ruan J, Zhang T. New insights regarding protein folding as learned from beta-sheets. EXCLI JOURNAL 2012;11:543-55. [PMID: 27540347 PMCID: PMC4983712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2012] [Accepted: 08/22/2012] [Indexed: 10/28/2022]
199
Jin X, Yu L, Wu Y, Zhang S, Shi Z, Chen X, Yang Y, Zhang X, Jiang C. S-Glutathionylation underscores the modulation of the heteromeric Kir4.1-Kir5.1 channel in oxidative stress. J Physiol 2012;590:5335-48. [PMID: 22907060 DOI: 10.1113/jphysiol.2012.236885] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
200
Raza A, Saeed A, Ibrar A, Muddassar M, Khan AA, Iqbal J. Pharmacological Evaluation and Docking Studies of 3-Thiadiazolyl- and Thioxo-1,2,4-triazolylcoumarin Derivatives as Cholinesterase Inhibitors. ISRN PHARMACOLOGY 2012;2012:707932. [PMID: 22966467 PMCID: PMC3431135 DOI: 10.5402/2012/707932] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2012] [Accepted: 05/17/2012] [Indexed: 11/23/2022]
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