151
|
Yasin MT, Ali Y, Ahmad K, Ghani A, Amanat K, Basheir MM, Faheem M, Hussain S, Ahmad B, Hussain A, Bokhari SAI. Alkaline lipase production by novel meso-tolerant psychrophilic Exiguobacterium sp. strain (AMBL-20) isolated from glacier of northeastern Pakistan. Arch Microbiol 2020; 203:1309-1320. [PMID: 33325000 DOI: 10.1007/s00203-020-02133-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Revised: 11/15/2020] [Accepted: 11/19/2020] [Indexed: 11/30/2022]
Abstract
Lipase is an important commercial enzyme with unique and versatile biotechnological applications. This study was conducted to biosynthesize and characterizes alkaliphilic lipase by Exiguobacterium sp. strain AMBL-20T isolated from the glacial water samples of the northeastern (Gilgit-Baltistan) region of Pakistan. The isolated bacterium was identified as Exiguobaterium sp. strain AMBL-20T on the basis of morphological, biochemical, and phylogenetic analysis of 16S rRNA sequences with GenBank accession number MW229267. The bacterial strain was further screened for its lipolytic activity, biosynthesis, and characterization by different parameters with the aim of maximizing lipase activity. Results showed that 2% Olive oil, 0.2% peptone at 25 °C, pH 8, and 24 h of incubation time found optimal for maximum lipase production. The lipase enzyme was partially purified by ammonium sulphate precipitation and its activity was standardized at pH 8 under 30 °C temperature. The enzyme showed functional stability over a range of temperature and pH. Hence, extracellular alkaliphilic lipase from Exiguobacterium sp. is a potential candidate with extraordinary industrial applications, particularly in bio-detergent formulations.
Collapse
Affiliation(s)
- Muhammad Talha Yasin
- Department of Biotechnology, Quaid-i-Azam University, Islamabad, 45320, Pakistan.
| | - Yasir Ali
- Department of Biological Sciences, International Islamic University Islamabad, Islamabad, 44000, Pakistan
| | - Khurshid Ahmad
- Department of Biological Sciences, International Islamic University Islamabad, Islamabad, 44000, Pakistan
| | - Abdul Ghani
- Department of Biological Sciences, International Islamic University Islamabad, Islamabad, 44000, Pakistan
| | - Kinza Amanat
- Department of Microbiology, University of Agriculture, Faisalabad, 38000, Pakistan
| | - Muhammad Mudassir Basheir
- Department of Biological Sciences, International Islamic University Islamabad, Islamabad, 44000, Pakistan
| | - Muhammad Faheem
- Department of Biological Sciences, International Islamic University Islamabad, Islamabad, 44000, Pakistan
| | - Saddam Hussain
- Department of Biological Sciences, International Islamic University Islamabad, Islamabad, 44000, Pakistan
| | - Bashir Ahmad
- Department of Biological Sciences, International Islamic University Islamabad, Islamabad, 44000, Pakistan
| | - Adil Hussain
- Department of Biotechnology, University of Okara, Okara, 56130, Pakistan
| | - Syed Ali Imran Bokhari
- Department of Biological Sciences, International Islamic University Islamabad, Islamabad, 44000, Pakistan
| |
Collapse
|
152
|
Lagomarsino VN, Kostic AD, Chiu IM. Mechanisms of microbial-neuronal interactions in pain and nociception. NEUROBIOLOGY OF PAIN 2020; 9:100056. [PMID: 33392418 PMCID: PMC7772816 DOI: 10.1016/j.ynpai.2020.100056] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 11/18/2020] [Accepted: 11/27/2020] [Indexed: 02/06/2023]
Abstract
Molecular mechanisms of how microorganisms communicate with sensory afferent neurons. How pathogenic microorganisms directly communicate with nociceptor neurons to inflict pain on the host. Symbiotic bacterial communication with gut-extrinsic sensory afferent neurons. Plausible roles on how gut symbionts directly mediate pain and nociception.
Nociceptor sensory neurons innervate barrier tissues that are constantly exposed to microbial stimuli. During infection, pathogenic microorganisms can breach barrier surfaces and produce pain by directly activating nociceptors. Microorganisms that live in symbiotic relationships with their hosts, commensals and mutualists, have also been associated with pain, but the molecular mechanisms of how symbionts act on nociceptor neurons to modulate pain remain largely unknown. In this review, we will discuss the known molecular mechanisms of how microbes directly interact with sensory afferent neurons affecting nociception in the gut, skin and lungs. We will touch on how bacterial, viral and fungal pathogens signal to the host to inflict or suppress pain. We will also discuss recent studies examining how gut symbionts affect pain. Specifically, we will discuss how gut symbionts may interact with sensory afferent neurons either directly, through secretion of metabolites or neurotransmitters, or indirectly,through first signaling to epithelial cells or immune cells, to regulate visceral, neuropathic and inflammatory pain. While this area of research is still in its infancy, more mechanistic studies to examine microbial-sensory neuron crosstalk in nociception may allow us to develop new therapies for the treatment of acute and chronic pain.
Collapse
Affiliation(s)
- Valentina N Lagomarsino
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA.,Joslin Diabetes Center, Boston, MA 02115, USA.,Department of Microbiology, Harvard Medical School, Boston, MA 02115, USA
| | - Aleksandar D Kostic
- Joslin Diabetes Center, Boston, MA 02115, USA.,Department of Microbiology, Harvard Medical School, Boston, MA 02115, USA
| | - Isaac M Chiu
- Department of Immunology, Harvard Medical School, Boston, MA 02115, USA
| |
Collapse
|
153
|
Tanaka R, Yamasaki S, Ishibashi M, Tokunaga H, Arakawa T, Tokunaga M. Salt-enhanced processing, proteolytic activity and stability of halophilic thermolysin-like proteinase, salilysin, isolated from a moderate halophile, Chromohalobacter salexigens DSM3043. Int J Biol Macromol 2020; 164:77-86. [PMID: 32668304 DOI: 10.1016/j.ijbiomac.2020.07.050] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2020] [Revised: 07/04/2020] [Accepted: 07/06/2020] [Indexed: 11/28/2022]
Abstract
Moderately halophilic bacterium, Chromohalobacter salexigens DSM3043, has a gene Csal_2537 encoding thermolysin-like M4 proteinase. This gene was cloned to pET expression vectors, resulting in high expression of recombinant proteinase, named as salilysin (salinity-dependent thermolysin-like proteinase), in Escherichia coli cytoplasm. This gene encodes precursor form of salilysin containing 348 amino acid residues (Pro-salilysin) consisting of 55 amino acids pro-sequence and following mature proteinase. Pro-sequence was cleaved three times to form intermediate 1, intermediate 2 and final mature salilysin. The processing rate was greatly accelerated in a salt concentration-dependent manner. Purified inactive mutant Pro-E167A-salilysin was correctly processed by purified mature salilysin, indicating that autolysis and inter-molecular processing occurred in its maturation processes. Proteolytic activity of mature salilysin against both peptide and protein substrates was also enhanced along with the addition of higher concentration of salt, 0-3.2 M NaCl, consistent with its halophilic origin. Mature salilysin was stabilized by ~8 °C in the presence of 1 M NaCl by thermal scanning using circular dichroism. One of the precursor form, intermediate 1, showed ~20 °C higher denaturation temperature than mature form, suggesting rigid and stable structure of this precursor form.
Collapse
Affiliation(s)
- Ryoichi Tanaka
- Applied and Molecular Microbiology, Faculty of Agriculture, Kagoshima University, 1-21-24 Korimoto, Kagoshima 890-0065, Japan
| | - Shunsuke Yamasaki
- Applied and Molecular Microbiology, Faculty of Agriculture, Kagoshima University, 1-21-24 Korimoto, Kagoshima 890-0065, Japan
| | - Matsujiro Ishibashi
- Applied and Molecular Microbiology, Faculty of Agriculture, Kagoshima University, 1-21-24 Korimoto, Kagoshima 890-0065, Japan
| | - Hiroko Tokunaga
- Applied and Molecular Microbiology, Faculty of Agriculture, Kagoshima University, 1-21-24 Korimoto, Kagoshima 890-0065, Japan
| | - Tsutomu Arakawa
- Alliance Protein Laboratories, a Division of KBI Biopharma, 6042 Cornerstone Court West, San Diego, CA 92121, USA
| | - Masao Tokunaga
- Applied and Molecular Microbiology, Faculty of Agriculture, Kagoshima University, 1-21-24 Korimoto, Kagoshima 890-0065, Japan.
| |
Collapse
|
154
|
Damare S, Mishra A, D'Souza-Ticlo-Diniz D, Krishnaswamy A, Raghukumar C. A deep-sea hydrogen peroxide-stable alkaline serine protease from Aspergillus flavus. 3 Biotech 2020; 10:528. [PMID: 33214975 DOI: 10.1007/s13205-020-02520-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Accepted: 10/28/2020] [Indexed: 11/26/2022] Open
Abstract
We report here the production of an alkaline serine protease by Aspergillus flavus isolated at 5600-m depth from deep-sea sediments of the Central Indian Basin. When grown on defatted groundnut oil meal at 30 °C for 48-72 h, this fungal isolate produced 2000-2500 ACU mL-1 of alkaline protease. The purified protease had activity optima at pH 10.0 and 45 °C. It was a thiol-independent serine protease, identified as an alkaline serine protease ALP1 with a molecular mass of 42.57 kDa. The thermostability and activity of the enzyme increased at 60 °C, in the presence of additives such as sucrose, Tween 20, sorbitol, Ca2+ and glycerol and was not adversely affected by H2O2 indicating its potential as a detergent additive.
Collapse
Affiliation(s)
- Samir Damare
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403 004 India
| | - Abhishek Mishra
- Department of Biotechnology, Goa University, Taleigao Plateau, Goa, 403 206 India
| | - Donna D'Souza-Ticlo-Diniz
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403 004 India
- Present Address: Department of Microbiology, SVKM's Mithibai College of Arts, Chauhan Institute of Science and Amrutben Jivanlal College of Commerce and Economics, Vile Parle West, Mumbai, India
| | - Akhila Krishnaswamy
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403 004 India
| | - Chandralata Raghukumar
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403 004 India
| |
Collapse
|
155
|
Ji D, Ma J, Xu M, Agyei D. Cell-envelope proteinases from lactic acid bacteria: Biochemical features and biotechnological applications. Compr Rev Food Sci Food Saf 2020; 20:369-400. [PMID: 33443792 DOI: 10.1111/1541-4337.12676] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 09/27/2020] [Accepted: 10/30/2020] [Indexed: 01/25/2023]
Abstract
Proteins displayed on the cell surface of lactic acid bacteria (LAB) perform diverse and important biochemical roles. Among these, the cell-envelope proteinases (CEPs) are one of the most widely studied and most exploited for biotechnological applications. CEPs are important players in the proteolytic system of LAB, because they are required by LAB to degrade proteins in the growth media into peptides and/or amino acids required for the nitrogen nutrition of LAB. The most important area of application of CEPs is therefore in protein hydrolysis, especially in dairy products. Also, the physical location of CEPs (i.e., being cell-envelope anchored) allows for relatively easy downstream processing (e.g., extraction) of CEPs. This review describes the biochemical features and organization of CEPs and how this fits them for the purpose of protein hydrolysis. It begins with a focus on the genetic organization and expression of CEPs. The catalytic behavior and cleavage specificities of CEPs from various LAB are also discussed. Following this, the extraction and purification of most CEPs reported to date is described. The industrial applications of CEPs in food technology, health promotion, as well as in the growing area of water purification are discussed. Techniques for improving the production and catalytic efficiency of CEPs are also given an important place in this review.
Collapse
Affiliation(s)
- Dawei Ji
- Department of Food Science, University of Otago, Dunedin, New Zealand
| | - Jingying Ma
- Department of Food Science, University of Otago, Dunedin, New Zealand
| | - Min Xu
- Department of Food Science, University of Otago, Dunedin, New Zealand
| | - Dominic Agyei
- Department of Food Science, University of Otago, Dunedin, New Zealand
| |
Collapse
|
156
|
Doan CT, Tran TN, Nguyen VB, Nguyen AD, Wang SL. Utilization of Seafood Processing By-Products for Production of Proteases by Paenibacillus sp. TKU052 and Their Application in Biopeptides' Preparation. Mar Drugs 2020; 18:md18110574. [PMID: 33233577 PMCID: PMC7699763 DOI: 10.3390/md18110574] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Revised: 11/15/2020] [Accepted: 11/18/2020] [Indexed: 02/07/2023] Open
Abstract
Microbial fermentation of by-products is a renewable and efficient technique in the development of a range of useful products. In this study, protease synthesis by Paenibacillus sp. TKU052 was carried out on culture media containing some common seafood processing by-products (SPBPs) as the sole source of carbon and nitrogen (C/N). The most suitable C/N nutrition source for the production of proteases was found to be 3.0% (w/v) demineralized crab shells powder (deCSP) and maximal enzyme activity of 4.41 ± 0.16 U/mL was detected on the third day of the culture. Two proteases (P1 and P2) with a similar molecular weight of 31 kDa were successfully isolated and purified from the 3-day deCSP-containing medium. Both P1 and P2 exhibited the highest activity of gelatin hydrolysis at pH 6 and 60 °C. The gelatin hydrolysates catalyzed by Paenibacillus TKU052 proteases were evaluated for biological activities, including 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging, angiotensin-I converting enzyme (ACE) inhibition, and prebiotic activities. The gelatin hydrolysates expressed 31.76–43.95% DPPH radical scavenging activity and 31.58–36.84% ACE inhibitory activity, which was higher than those from gelatin. Gelatin hydrolysates also showed the growth-enhancing effect on Bifidobacterium bifidum BCRC 14615 with an increase to 135.70–147.81%. In short, Paenibacillus sp. TKU052 could be a potential strain to utilize crab shell wastes to produce proteases for bio-active peptides’ preparation.
Collapse
Affiliation(s)
- Chien Thang Doan
- Department of Natural Science and Technology, Tay Nguyen University, Buon Ma Thuot 630000, Vietnam; (C.T.D.); (T.N.T.)
- Department of Chemistry, Tamkang University, New Taipei City 25137, Taiwan
| | - Thi Ngoc Tran
- Department of Natural Science and Technology, Tay Nguyen University, Buon Ma Thuot 630000, Vietnam; (C.T.D.); (T.N.T.)
- Department of Chemistry, Tamkang University, New Taipei City 25137, Taiwan
| | - Van Bon Nguyen
- Institute of Biotechnology and Environment, Tay Nguyen University, Buon Ma Thuot 630000, Vietnam; (V.B.N.); (A.D.N.)
| | - Anh Dzung Nguyen
- Institute of Biotechnology and Environment, Tay Nguyen University, Buon Ma Thuot 630000, Vietnam; (V.B.N.); (A.D.N.)
| | - San-Lang Wang
- Department of Chemistry, Tamkang University, New Taipei City 25137, Taiwan
- Life Science Development Center, Tamkang University, New Taipei City 25137, Taiwan
- Correspondence: ; Tel.: +886-2-2621-5656; Fax: +886-2-2620-9924
| |
Collapse
|
157
|
Elleuch J, Hadj Kacem F, Ben Amor F, Hadrich B, Michaud P, Fendri I, Abdelkafi S. Extracellular neutral protease from Arthrospira platensis: Production, optimization and partial characterization. Int J Biol Macromol 2020; 167:1491-1498. [PMID: 33202265 DOI: 10.1016/j.ijbiomac.2020.11.102] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2020] [Revised: 11/12/2020] [Accepted: 11/13/2020] [Indexed: 12/30/2022]
Abstract
Proteases are industrially important catalysts. They belong to a complex family of enzymes that perform highly focused proteolysis functions. Given their potential use, there has been renewed interest in the discovery of proteases with novel properties and a constant thrust to optimize the enzyme production. In the present study, a novel extracellular neutral protease produced from Arthrospira platensis was detected and characterized. Its proteolytic activity was strongly activated by β-mercaptoethanol, 5,5-dithio-bis-(2-nitrobenzoic acid) and highly inhibited by Hg2+ and Zn2+ metal ions which support the fact that the studied protease belongs to the cysteine protease family. Using statistical modelling methodology, the logistic model has been selected to predict A. platensis growth-kinetic values. The optimal culture conditions for neutral protease production were found using Box-Behnken Design. The maximum experimental protease activities (159.79 U/mL) was achieved after 13 days of culture in an optimized Zarrouk medium containing 0.625 g/L NaCl, 0.625 g/L K2HPO4 and set on 9.5 initial pH. The extracellular protease of A. platensis can easily be used in the food industry for its important activity at neutral pH and its low production cost since it is a valuation of the residual culture medium after biomass recovery.
Collapse
Affiliation(s)
- Jihen Elleuch
- Laboratoire de Génie Enzymatique et Microbiologie, Equipe Biotechnologie des Algues, Ecole Nationale d'Ingénieurs de Sfax, Université de Sfax, Sfax, Tunisia
| | - Farah Hadj Kacem
- Laboratoire de Génie Enzymatique et Microbiologie, Equipe Biotechnologie des Algues, Ecole Nationale d'Ingénieurs de Sfax, Université de Sfax, Sfax, Tunisia
| | - Faten Ben Amor
- Laboratoire de Génie Enzymatique et Microbiologie, Equipe Biotechnologie des Algues, Ecole Nationale d'Ingénieurs de Sfax, Université de Sfax, Sfax, Tunisia
| | - Bilel Hadrich
- Laboratoire de Génie Enzymatique et Microbiologie, Equipe Biotechnologie des Algues, Ecole Nationale d'Ingénieurs de Sfax, Université de Sfax, Sfax, Tunisia
| | - Philippe Michaud
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France
| | - Imen Fendri
- Laboratoroire de Biotechnologies Végétales Appliquées à l'Amélioration des Cultures, Faculté des Sciences de Sfax, Université de Sfax, Sfax, Tunisia
| | - Slim Abdelkafi
- Laboratoire de Génie Enzymatique et Microbiologie, Equipe Biotechnologie des Algues, Ecole Nationale d'Ingénieurs de Sfax, Université de Sfax, Sfax, Tunisia.
| |
Collapse
|
158
|
Siritapetawee J, Limphirat W, Pakawanit P, Phoovasawat C. Application of Bacillus sp. protease in the fabrication of silver/silver chloride nanoparticles in solution and cotton gauze bandages. Biotechnol Appl Biochem 2020; 69:20-29. [PMID: 33179817 DOI: 10.1002/bab.2075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Accepted: 11/05/2020] [Indexed: 11/07/2022]
Abstract
Silver (Ag)/silver chloride (AgCl) nanoparticles have been used worldwide for their antimicrobial activity. Proteases play an important role in many physiological processes during wound healing. Therefore, the aim of this study was to fabricate silver-type nanoparticles exhibiting protease activity for medical applications such as wound healing and dressings. The Ag/AgCl nanoparticles were fabricated using Bacillus sp. protease and visible light activation. The size of the fabricated nanoparticles was estimated to be 35.29 ± 6.43 nm. The nanoparticles were coated on a cotton gauze bandage using immersion and ultrasonication. Scanning electron microscopy and energy dispersive X-ray spectroscopy confirmed that the nanoparticles could be used to coat the gauze bandage. Synchrotron radiation X-ray tomographic microscopy indicated that coating with the nanoparticles did not destroy the packing of cotton fibers in the gauze bandage. The nanoparticles exhibited fibrinolytic and collagenolytic activities. Protease activity remained after the nanoparticle coating was applied to the gauze bandage. The nanoparticles were not absorbed on a gelatin agar plate after incubation at 37 °C for 18 H. These results suggest that the coated cotton gauze bandage may be safe for further use, and the nanoparticles may not be absorbed into animal or human skin.
Collapse
Affiliation(s)
- Jaruwan Siritapetawee
- Biochemistry-Electrochemistry Research Unit, School of Chemistry, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima, Thailand
| | - Wanwisa Limphirat
- Synchrotron Light Research Institute (Public Organization), Nakhon Ratchasima, Thailand
| | | | | |
Collapse
|
159
|
Biochemical and thermodynamic characteristics of a new serine protease from Mucor subtilissimus URM 4133. ACTA ACUST UNITED AC 2020; 28:e00552. [PMID: 33294402 PMCID: PMC7683317 DOI: 10.1016/j.btre.2020.e00552] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Revised: 07/27/2020] [Accepted: 10/29/2020] [Indexed: 11/22/2022]
Abstract
A protease from the fungus Mucor subtilissimus URM 4133, capable of producing bioactive peptides from goat casein, was purified. SDS-PAGE and zymography showed a molecular mass of 30 kDa. The enzyme was active and stable in a wide pH range (6.0–10.5) and (5.0–10.5), respectively. Optimum temperature was at 45–50 °C and stability was above 80 % (40 °C/2 h). Activity was not influenced by ions or organic substances (Triton, Tween, SDS and DMSO), but was completely inhibited by PMSF, suggesting that it belongs to the serine protease family. The Km and Vmax were 2.35 mg azocasein.mL-1 and 333.33 U.mg protein-1, respectively. Thermodynamic parameters of irreversible denaturation (40–60 °C) were enthalpy 123.63 – 123.46 kJ.mol-1, entropy 120.24–122.28 kJ.mol-1 and Gibbs free energy 85.97 – 82.45 kJ.mol-1. Any peptide sequences compatible with this protease were found after analysis by MALDI-TOF, which suggests that it is a new serine protease.
Collapse
|
160
|
Expression, purification, and molecular characterization of a full-length thermostable alkaline protease gene from Bacillus subtilis DMA-09. Biologia (Bratisl) 2020. [DOI: 10.2478/s11756-020-00608-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
161
|
de Oliveira JM, Fernandes P, Benevides RG, de Assis SA. Characterization and immobilization of protease secreted by the fungus Moorella speciosa. 3 Biotech 2020; 10:419. [PMID: 32953381 DOI: 10.1007/s13205-020-02412-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 08/24/2020] [Indexed: 10/23/2022] Open
Abstract
Protease was extracellularly produced in submerged fermentation by the fungus Moorella speciosa with maximum activity of 8.6 × 103 U/mL. The optimal pH and temperature for enzyme activity were 6.78 and 60.88 °C, respectively. The enzyme was incubated in the presence of several ions at concentrations of 0.1 M and 0.01 M to address the effect on enzyme activity. Enzyme activity was increased by 56% and 130% in the presence of 0.1 M BaCl2 and of 0.01 M Na2SO4, respectively. The V max and K m values were 0.01474 U/min/mg protein and 0.04190 mg/mL, respectively. The enzyme retained about 90% of enzymatic activity at 90 °C. Among the methods tested for enzyme immobilization, adsorption onto MAT540 carrier led to the most promising results, since after 15 reuse cycles up to 60% of the initial catalytic activity was retained. Entrapment in calcium alginate matrix allowed to retain up to 51% of the initial catalytic activity after 8 reuse cycles. This protease from M. speciosa, in either free or immobilized form, can be foreseen as a useful biocatalytic tool in process design by reducing operating costs, decreasing the use of chemical processing and, consequently, meeting the global demand for clean technologies.
Collapse
|
162
|
Augmentation of protease production from psychrotrophic Acinetobacter sp. IHB B 5011(MN12) from Western Himalayas. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2020. [DOI: 10.1016/j.bcab.2020.101795] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
163
|
Doan CT, Tran TN, Wang CL, Wang SL. Microbial Conversion of Shrimp Heads to Proteases and Chitin as an Effective Dye Adsorbent. Polymers (Basel) 2020; 12:E2228. [PMID: 32998333 PMCID: PMC7601101 DOI: 10.3390/polym12102228] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2020] [Revised: 09/26/2020] [Accepted: 09/26/2020] [Indexed: 02/06/2023] Open
Abstract
As a green and effective technique in the production of a large number of valuable products, the microbial conversion of chitinous fishery wastes is receiving much attention. In this study, protease production using the Paenibacillus mucilaginosus TKU032 strain was conducted on culture media containing several common types of chitinous fishery by-products serving as the carbon and nitrogen (C/N) nutrition source. Among the chitinous wastes, 1.5% (w/v) shrimp head powder (SHP) was found to be the most appropriate nutritional source for protease production when a maximal enzyme activity of 3.14 ± 0.1 U/mL was observed on the 3rd day of the culture period. The molecular mass of P. mucilaginosus TKU032 protease was estimated to be nearly 32 kDa by the polyacrylamide gel electrophoresis method. The residual SHP obtained from the culture medium was also considered to be utilized for chitin extraction. The deproteinization rate of the fermentation was estimated to be 45%, and the chitin obtained from fermented SHP (fSHP) displayed a similar characteristic Fourier-transform infrared spectroscopy (FTIR) profile as that from SHP. In addition, SHP, fSHP, and chitins obtained from SHP and fSHP were investigated for their adsorptive capacity of nine types of dyes, and chitin obtained from fSHP displayed a good adsorption rate on Congo Red and Red No. 7, at 99% and 97%, respectively. In short, the results provide potential support for the utilization of SHP in the production of P. mucilaginosus TKU032 protease via the fermentation as well as the preparation of chitin from fSHP as an effective dye adsorbent.
Collapse
Affiliation(s)
- Chien Thang Doan
- Department of Natural Science and Technology, Tay Nguyen University, Buon Ma Thuot 630000, Vietnam; (C.T.D.); (T.N.T.)
- Department of Chemistry, Tamkang University, New Taipei City 25137, Taiwan
| | - Thi Ngoc Tran
- Department of Natural Science and Technology, Tay Nguyen University, Buon Ma Thuot 630000, Vietnam; (C.T.D.); (T.N.T.)
- Department of Chemistry, Tamkang University, New Taipei City 25137, Taiwan
| | - Chuan-Lu Wang
- Department of Fashion Beauty Design, Lan Yang Institute of Technology, Yilan County 26141, Taiwan;
| | - San-Lang Wang
- Department of Chemistry, Tamkang University, New Taipei City 25137, Taiwan
- Life Science Development Center, Tamkang University, New Taipei City 25137, Taiwan
| |
Collapse
|
164
|
de Lima EE, Franco DG, Galeano RMS, Guimarães NCDA, Masui DC, Giannesi GC, Zanoelo FF. Biochemical characterization of a partially purified protease from Aspergillus terreus 7461 and its application as an environmentally friendly dehairing agent for leather industry. Prep Biochem Biotechnol 2020; 51:320-330. [PMID: 32903132 DOI: 10.1080/10826068.2020.1815058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Proteases can be used in several biotechnological processes including detergent, food and leather industries. In the leather industry, dehairing is carried out by chemicals, which pollute the environment. Therefore, to make the hair removal process environmentally friendly, a protease produced by Aspergillus terreus has been purified, biochemically characterized and had an efficient ability to remove hair from bovine leather. The protease was produced using 1% wheat bran and was purified 2.3-fold using two chromatographic steps showing a molecular weight of 90 kDa. Optimal temperature and pH were 50 °C and 6.5, respectively. Thermal stability was up to 1 h at 50 °C. Protease was stable to detergents like Tween 80 and to organic solvents. The activity was activated by Ca2+ and inhibited by Hg2+ and Cu2+. The enzyme was classified as serine protease, by the inhibition by PMSF and was stable to reducing agents. It hydrolyzed casein, azocasein, BSA, egg albumin and BTpNA. The Km and Vmax values were 0.65 ± 0.03 mg/mL and 3.66 ± 0.18 μmol/min, respectively. Remarkable properties about temperature, pH, stability to detergents and reducing agents ensure that the protease from A. terreus can be an excellent candidate for industrial applications, particularly in the leather industry.
Collapse
Affiliation(s)
- Emmly Ernesto de Lima
- Laboratory of Biochemistry and Microorganisms - Bioscience Institute (InBio), Federal University of Mato Grosso of Sul/UFMS, Campo Grande, MS, Brazil
| | - Daniel Guerra Franco
- Laboratory of Biochemistry and Microorganisms - Bioscience Institute (InBio), Federal University of Mato Grosso of Sul/UFMS, Campo Grande, MS, Brazil
| | - Rodrigo Mattos Silva Galeano
- Laboratory of Biochemistry and Microorganisms - Bioscience Institute (InBio), Federal University of Mato Grosso of Sul/UFMS, Campo Grande, MS, Brazil
| | | | - Douglas Chodi Masui
- Laboratory of Biochemistry and Microorganisms - Bioscience Institute (InBio), Federal University of Mato Grosso of Sul/UFMS, Campo Grande, MS, Brazil
| | - Giovana Cristina Giannesi
- Laboratory of Biochemistry and Microorganisms - Bioscience Institute (InBio), Federal University of Mato Grosso of Sul/UFMS, Campo Grande, MS, Brazil
| | - Fabiana Fonseca Zanoelo
- Laboratory of Biochemistry and Microorganisms - Bioscience Institute (InBio), Federal University of Mato Grosso of Sul/UFMS, Campo Grande, MS, Brazil
| |
Collapse
|
165
|
de Oliveira BFR, Carr CM, Dobson ADW, Laport MS. Harnessing the sponge microbiome for industrial biocatalysts. Appl Microbiol Biotechnol 2020; 104:8131-8154. [PMID: 32827049 DOI: 10.1007/s00253-020-10817-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 07/29/2020] [Accepted: 08/05/2020] [Indexed: 12/31/2022]
Abstract
Within the marine sphere, host-associated microbiomes are receiving growing attention as prolific sources of novel biocatalysts. Given the known biocatalytic potential of poriferan microbial inhabitants, this review focuses on enzymes from the sponge microbiome, with special attention on their relevant properties and the wide range of their potential biotechnological applications within various industries. Cultivable bacterial and filamentous fungal isolates account for the majority of the enzymatic sources. Hydrolases, mainly glycoside hydrolases and carboxylesterases, are the predominant reported group of enzymes, with varying degrees of tolerance to alkaline pH and growing salt concentrations being common. Prospective areas for the application of these microbial enzymes include biorefinery, detergent, food and effluent treatment industries. Finally, alternative strategies to identify novel biocatalysts from the sponge microbiome are addressed, with an emphasis on modern -omics-based approaches that are currently available in the enzyme research arena. By providing this current overview of the field, we hope to not only increase the appetite of researchers to instigate forthcoming studies but also to stress how basic and applied research can pave the way for new biocatalysts from these symbiotic microbial communities in a productive fashion. KEY POINTS: • The sponge microbiome is a burgeoning source of industrial biocatalysts. • Sponge microbial enzymes have useful habitat-related traits for several industries. • Strategies are provided for the future discovery of microbial enzymes from sponges.
Collapse
Affiliation(s)
- Bruno Francesco Rodrigues de Oliveira
- Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil. .,School of Microbiology, University College Cork, Cork, Ireland.
| | - Clodagh M Carr
- School of Microbiology, University College Cork, Cork, Ireland
| | - Alan D W Dobson
- School of Microbiology, University College Cork, Cork, Ireland.,Environmental Research Institute, University College Cork, Cork, Ireland
| | - Marinella Silva Laport
- Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| |
Collapse
|
166
|
Prayogo FA, Budiharjo A, Kusumaningrum HP, Wijanarka W, Suprihadi A, Nurhayati N. Metagenomic applications in exploration and development of novel enzymes from nature: a review. J Genet Eng Biotechnol 2020; 18:39. [PMID: 32749574 PMCID: PMC7403272 DOI: 10.1186/s43141-020-00043-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 06/10/2020] [Indexed: 12/14/2022]
Abstract
BACKGROUND Microbial community has an essential role in various fields, especially the industrial sector. Microbes produce metabolites in the form of enzymes, which are one of the essential compounds for industrial processes. Unfortunately, there are still numerous microbes that cannot be identified and cultivated because of the limitations of the culture-based method. The metagenomic approach is a solution for researchers to overcome these problems. Metagenomics is a strategy used to analyze the genomes of microbial communities in the environment directly. Metagenomics application used to explore novel enzymes is essential because it allows researchers to obtain data on microbial diversity, reaching of 99% and various types of genes encoding an enzyme that has not yet been identified. Basic methods in metagenomics have been developed and are commonly used in various studies. A basic understanding of metagenomics for researchers is needed, especially young researchers to support the success of the research. SHORT CONCLUSION Therefore, this review was done in order to provide a deep understanding of metagenomics. It also discussed the application and basic methods of metagenomics in the exploration of novel enzymes, especially in the latest research. Several types of enzymes, such as cellulases, proteases, and lipases, which have been explored using metagenomics, were reviewed in this article.
Collapse
Affiliation(s)
- Fitra Adi Prayogo
- Department of Biology, Faculty of Science and Mathematics, Diponegoro University, Semarang City, 50275 Indonesia
| | - Anto Budiharjo
- Biotechnology Study Program, Faculty of Science and Mathematics, Diponegoro University, Jl. Prof. Sudharto SH, Semarang, 50275 Indonesia
- Molecular and Applied Microbiology Laboratory, Center Central Laboratory of Research and Service - Diponegoro University, Jl. Prof. Sudharto SH, Semarang, 50275 Indonesia
| | | | - Wijanarka Wijanarka
- Biotechnology Study Program, Faculty of Science and Mathematics, Diponegoro University, Jl. Prof. Sudharto SH, Semarang, 50275 Indonesia
| | - Agung Suprihadi
- Biotechnology Study Program, Faculty of Science and Mathematics, Diponegoro University, Jl. Prof. Sudharto SH, Semarang, 50275 Indonesia
| | - Nurhayati Nurhayati
- Biotechnology Study Program, Faculty of Science and Mathematics, Diponegoro University, Jl. Prof. Sudharto SH, Semarang, 50275 Indonesia
| |
Collapse
|
167
|
Danilova I, Sharipova M. The Practical Potential of Bacilli and Their Enzymes for Industrial Production. Front Microbiol 2020; 11:1782. [PMID: 32849401 PMCID: PMC7417770 DOI: 10.3389/fmicb.2020.01782] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2020] [Accepted: 07/07/2020] [Indexed: 12/14/2022] Open
Abstract
Bacillus spp. are an affordable source of enzymes due to their wide distribution, safety in work, ease of cultivation, and susceptibility to genetic transformations. Researchers are particularly interested in proteolytic enzymes, which constitute one of the most diverse groups of microbial proteins in terms of properties. Despite the long history of their research, this group of enzymes continue to show great potential for practical application in the biomedical industry, as well as in the agricultural industry. Thus, the unique properties of bacillary proteinases, such as stability in a wide range of temperatures and pH, high specificity, biodegradability of a wide range of substrates, and the high potential of sequenced Bacillus genomes are a powerful foundation for the development of new biotechnologies. The current review aims to discuss recent studies on various enzymes in particular, proteinases produced by bacteria of the genus Bacillus, along with their prospective practical applications. This article also presents an interpretive summary of the recent developments on the usage of probiotic Bacillus strains as potential feed additives.
Collapse
Affiliation(s)
- Iuliia Danilova
- Department of Microbiology, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
| | - Margarita Sharipova
- Department of Microbiology, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia
| |
Collapse
|
168
|
Duffeck CE, de Menezes CLA, Boscolo M, da Silva R, Gomes E, da Silva RR. Keratinases from Coriolopsis byrsina as an alternative for feather degradation: applications for cloth cleaning based on commercial detergent compatibility and for the production of collagen hydrolysate. Biotechnol Lett 2020; 42:2403-2412. [PMID: 32642979 DOI: 10.1007/s10529-020-02963-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Accepted: 07/03/2020] [Indexed: 01/24/2023]
Abstract
OBJECTIVES Keratinases are proteolytic enzymes that emerge as an alternative for dealing with the disposal of chicken feathers. In this study, we aimed to investigate the keratin-degrading enzymes secreted by the fungus Coriolopsis byrsina and their partial biochemical characterization to adapt their use for keratin decomposition, detergent additive applications, and collagen degradation. RESULTS We observed the secretion of different proteolytic enzymes that possessed caseinolytic activity that peaked at pH 7.0-9.0 and 60-70 °C and at pH 10.5 and 55-60 °C, and keratinolytic activity that reached a maximum at pH 7.0-7.5 and 40-55 ºC and at pH 9.0 and 55 °C. Keratinolytic activity was maintained at approximately 63% of residual activity for 1 h at 50 °C. The caseinolytic activity at pH 10.5 remains stable until 1 h at 50 °C, and this is in contrast to the activity at pH 8.5, where the residual activity was 50%. Caseinolytic activity was inhibited only by PMSF, while keratinolytic activity was inhibited by PMSF and EDTA. When investigating the application of C. byrsina peptidases as an additive to commercial detergent, we observed an egg stain removal performance that was similar to that demonstrated by the commercial detergent. CONCLUSIONS Based on their activity and stability at alkaline pH, these enzymes appear to be attractive candidates for use in the detergent industry. Additionally, the collagenolytic activity of these enzymes potentially allows for their use in a wide array of industrial sectors that require collagenolytic enzymes, such as for the production of collagen hydrolysates from residues derived from the meat industry.
Collapse
Affiliation(s)
- Carlos Eduardo Duffeck
- Instituto de Biociências, Letras e Ciências Exatas-Universidade Estadual Paulista Júlio de Mesquita Filho -São José do Rio Preto, São Paulo, Brazil
| | - Cíntia Lionela Ambrosio de Menezes
- Instituto de Biociências, Letras e Ciências Exatas-Universidade Estadual Paulista Júlio de Mesquita Filho -São José do Rio Preto, São Paulo, Brazil
| | - Maurício Boscolo
- Instituto de Biociências, Letras e Ciências Exatas-Universidade Estadual Paulista Júlio de Mesquita Filho -São José do Rio Preto, São Paulo, Brazil
| | - Roberto da Silva
- Instituto de Biociências, Letras e Ciências Exatas-Universidade Estadual Paulista Júlio de Mesquita Filho -São José do Rio Preto, São Paulo, Brazil
| | - Eleni Gomes
- Instituto de Biociências, Letras e Ciências Exatas-Universidade Estadual Paulista Júlio de Mesquita Filho -São José do Rio Preto, São Paulo, Brazil
| | - Ronivaldo Rodrigues da Silva
- Instituto de Biociências, Letras e Ciências Exatas-Universidade Estadual Paulista Júlio de Mesquita Filho -São José do Rio Preto, São Paulo, Brazil.
| |
Collapse
|
169
|
Production of detergent stable thermophilic alkaline protease by Bacillus licheniformis ALW1. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2020. [DOI: 10.1016/j.bcab.2020.101631] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
|
170
|
Pathak AP, Rathod MG, Mahabole MP, Khairnar RS. Enhanced catalytic activity of Bacillus aryabhattai P1 protease by modulation with nanoactivator. Heliyon 2020; 6:e04053. [PMID: 32529068 PMCID: PMC7276444 DOI: 10.1016/j.heliyon.2020.e04053] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 03/26/2020] [Accepted: 05/19/2020] [Indexed: 11/24/2022] Open
Abstract
In the developing area of modern nanobiotechnology, the research is being focused on enhancement of catalytic performance in terms of efficiency and stability of enzymes to fulfill the industrial demand. In the context of this interdisciplinary era, we isolated and identified alkaline protease producer Bacillus aryabhattai P1 by polyphasic approach and then followed one variable at a time approach to optimize protease production from P1. The modified components of fermentation medium (g/L) were wheat bran 10, soybean flour 10, yeast extract 5, NaCl 10, KH2PO4 1, K2HPO4 1 and MgSO4·7H2O 0.2 (pH 9). The optimum alkaline protease production from P1 was recorded 75 ± 3 U/mg at 35 °C and pH 9 after 96 h of fermentation period. Molecular weight of partially purified P1 alkaline protease was 26 KDa as revealed by SDS-PAGE. Calcium based nanoceramic material was prepared by wet chemical precipitation method and doped in native P1 protease for catalytic activity enhancement. Catalytic activity of modified P1 protease was attained by nanoactivator mediated modulation was more by 5.58 fold at pH 10 and 30 °C temperature. The nanoceramic material named as nanoactivator, with grain size of 40–60 nm was suitable to redesign the active site of P1 protease. Such types of modified proteases can be used in different nanobiotechnological applications.
Collapse
Affiliation(s)
- Anupama P Pathak
- School of Life Sciences (DST-FIST Phase-I & UGC-SAP DRS-II Sponsored School), Swami Ramanand Teerth Marathwada University, Nanded 431606, Maharashtra, India
| | - Mukundraj G Rathod
- Department of Biotechnology & Bioinformatics (U.G. & P.G.), Yeshwant College of Information Technology (BT & BI) Parbhani (affiliated to S.R.T.M. University, Nanded), Maharashtra, India
| | - Megha P Mahabole
- School of Physical Sciences, Swami Ramanand Teerth Marathwada University, Nanded 431606, Maharashtra, India
| | - Rajendra S Khairnar
- School of Physical Sciences, Swami Ramanand Teerth Marathwada University, Nanded 431606, Maharashtra, India
| |
Collapse
|
171
|
Biochemical Properties of a Partially Purified Protease from Bacillus sp. CL18 and Its Use to Obtain Bioactive Soy Protein Hydrolysates. Appl Biochem Biotechnol 2020; 192:643-664. [PMID: 32504245 DOI: 10.1007/s12010-020-03355-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Accepted: 05/22/2020] [Indexed: 12/17/2022]
Abstract
Microbial proteases are relevant biocatalysts with diverse applications. Production of protein hydrolysates is recently focused, since they might display biological activities. Therefore, the extracellular protease from Bacillus sp. CL18 was partially purified through ammonium sulfate precipitation (25-50% saturation) and gel filtration chromatography, with a 60.7-fold purification (40,593 U/mg protein) and 21.3% recovery. The partially purified protease (PPP) was characterized as a serine protease, with optimal activity at 51-59 °C and pH 7.4-8.8 and low thermal stability. Thermal inactivation followed first-order kinetics. PPP depended on Ca2+ for higher thermal stability, depicted by increases in half-lives (t1/2), activation energy (Ea), and free energy (ΔG#) for kinetic inactivation. PPP preferentially hydrolyzed casein > soy protein isolate (SPI) >>> keratinous materials. SPI hydrolysis by PPP was further investigated, and the obtained hydrolysates exhibited increased in vitro bioactivities. Hydrolysates displayed antioxidant capacities through the scavenging of synthetic organic radicals and Fe3+-reducing ability. In addition, hydrolysates inhibited the activities of dipeptidyl peptidase IV (DPP IV) and angiotensin-converting enzyme (ACE), suggesting antidiabetic and antihypertensive potentials, respectively. From its biochemical properties, PPP might be used to produce protein hydrolysates with multifunctional bioactivities. Both PPP and SPI hydrolysates can find applications in food biotechnology.
Collapse
|
172
|
Stirling F, Silver PA. Controlling the Implementation of Transgenic Microbes: Are We Ready for What Synthetic Biology Has to Offer? Mol Cell 2020; 78:614-623. [PMID: 32442504 PMCID: PMC7307494 DOI: 10.1016/j.molcel.2020.03.034] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 03/24/2020] [Accepted: 03/26/2020] [Indexed: 12/13/2022]
Abstract
Synthetic biology has promised and delivered on an impressive array of applications based on genetically modified microorganisms. While novel biotechnology undoubtedly offers benefits, like all new technology, precautions should be considered during implementation to reduce the risk of both known and unknown adverse effects. To achieve containment of transgenic microorganisms, confidence to a near-scientific certainty that they cannot transfer their transgenic genes to other organisms, and that they cannot survive to propagate in unintended environments, is a priority. Here, we present an in-depth summary of biological containment systems for micro-organisms published to date, including the production of a genetic firewall through genome recoding and physical containment of microbes using auxotrophies, regulation of essential genes, and expression of toxic genes. The level of containment required to consider a transgenic organism suitable for deployment is discussed, as well as standards of practice for developing new containment systems.
Collapse
Affiliation(s)
- Finn Stirling
- Department of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Warren Alpert 536, Boston, MA 02115, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, 3 Blackfan Circle, 5th Floor, Boston, MA 02115, USA
| | - Pamela A Silver
- Department of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Warren Alpert 536, Boston, MA 02115, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, 3 Blackfan Circle, 5th Floor, Boston, MA 02115, USA.
| |
Collapse
|
173
|
Navone L, Speight R. Enzymatic removal of dags from livestock: an agricultural application of enzyme technology. Appl Microbiol Biotechnol 2020; 104:5739-5748. [PMID: 32405756 DOI: 10.1007/s00253-020-10656-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 04/23/2020] [Accepted: 04/29/2020] [Indexed: 10/24/2022]
Abstract
The effective removal of dags (manure balls) from cattle, sheep and goats is a significant issue for the livestock industry. Dags are hard recalcitrant deposits composed of materials, such as faeces, hair, soil, urine, feed and straw, and attach to the animal through the hair rather than the skin. Dags build up during wet periods, especially on long haired breeds, and can weigh up to 40 kg per animal for cattle. Dag removal prior to slaughter reduces the risk of microbial meat contamination and damage to the hide during leather processing. Existing removal methods include hair trimming or extensive hose washing that can result in stress to the animal and increased costs. An alternative solution is the application of enzyme formulations that target specific components of the dag so they are more easily removed by washing. Enzymes are already used in other cleaning applications and are proven for the breakdown of materials such as lignocellulose, protein or starch that are found in dags. This mini-review discusses the challenges of current dag removal methods and the state of the art and feasibility of applying enzyme formulations for the effective removal of dags. Although enzyme formulations are yet to be tested in large-scale cattle trials and questions remain regarding how they would be cost-effectively applied to live animals, the results at laboratory scale suggest further research is warranted. Overall, enzymes present an environmentally friendly solution to the high costs and animal welfare issues of current dag removal methods through significant reductions in cleaning time and water use. KEY POINTS: • Dag formation on livestock is a major issue for industry and for animal welfare. • Current methods are costly and challenging for operators and the animal. • Enzymes can degrade dag components to aid release with keratinases showing promise. • Dag removal needs to be field tested, and positive business cases must be generated.
Collapse
Affiliation(s)
- Laura Navone
- Science and Engineering Faculty, Queensland University of Technology, Brisbane, Australia
| | - Robert Speight
- Science and Engineering Faculty, Queensland University of Technology, Brisbane, Australia.
| |
Collapse
|
174
|
Sarkar G, K S. Extraction and characterization of alkaline protease from Streptomyces sp. GS-1 and its application as dehairing agent. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2020. [DOI: 10.1016/j.bcab.2020.101590] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
|
175
|
Genome and secretome analysis of jute endophyte Grammothele lineata strain SDL-CO-2015-1: Insights into its lignocellulolytic structure and secondary metabolite profile. Genomics 2020; 112:2794-2803. [PMID: 32217134 DOI: 10.1016/j.ygeno.2020.03.017] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 03/02/2020] [Accepted: 03/22/2020] [Indexed: 12/30/2022]
Abstract
Grammothele lineata strain SDL-CO-2015-1, jute (Corchorus olitorius) endophyte has been reported to produce anti-cancer drug paclitaxel in culture condition. Here we investigated the genome using different bioinformatic tools to find its association with the production of commercially important compounds including taxol. Carbohydrate-active enzymes, proteases, and secretory proteins were annotated revealing a complex endophytic relationship with its plant host. The presences of a diverse range of CAZymes including numerous lignocellulolytic enzymes support its potentiality in biomass degradation. Genome annotation led to the identification of 28 clusters for secondary metabolite biosynthesis. Several biosynthesis gene clusters were identified for terpene biosynthesis from antiSMASH analysis but none could be specifically pinned to taxol synthesis. This study will direct us to understand the genomic organization of endophytic basidiomycetes with a potential for producing numerous commercially important enzymes and secondary metabolites taking G. lineata as a model.
Collapse
|
176
|
Sharma A, Sharma P, Singh J, Singh S, Nain L. Prospecting the Potential of Agroresidues as Substrate for Microbial Flavor Production. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2020. [DOI: 10.3389/fsufs.2020.00018] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
|
177
|
Development of nano-silver alkaline protease bio-conjugate depilating eco-benign formulation by utilizing potato peel based medium. Int J Biol Macromol 2020; 152:261-271. [PMID: 32105689 DOI: 10.1016/j.ijbiomac.2020.02.251] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Revised: 02/22/2020] [Accepted: 02/22/2020] [Indexed: 01/20/2023]
Abstract
A new bio-conjugate nano-silver enzyme conjugate complex (BC-nAg-Akp) was formulated containing alkaline protease (Akp). The present research involved synthesis of nAg particles in acetone concentrated enzyme sol using 0.005 M AgNO3 solution formed within interaction time of 24 h through photo catalysis. The BC-nAG-Akp composite exhibited 1.9-fold increase in enzyme activity. The formulation was characterized using techniques viz., SEM, SEM-EDS, TEM, and DLS spectroscopy. The TEM analysis revealed synthesis of silver nano rods with size dimensions ranging from 40 to 80 nm. Likewise, the mean hydrodynamic diameter was 114 nm with polydispersity index of 0.260 and had the largest diffusion constant of 4.28 × 108 amongst the three forms of the formulation (crude, acetone concentrated and partially purified) on DLS characterization. The SEM-EDS analysis showed occurrence of 18.32 and 3.79%weight and %atom of Ag element respectively. The prepared formulation was investigated for its dehairing performance. The ideal dehairing was achieved at 37 °C after 12 h of treatment. The histopathological studies revealed that complete dehairing with minimal rarefication was achieved and was found perform better compared to the commercial Akp and control (crude enzyme) formulations.
Collapse
|
178
|
Dhakar K, Pandey A. Microbial Ecology from the Himalayan Cryosphere Perspective. Microorganisms 2020; 8:microorganisms8020257. [PMID: 32075196 PMCID: PMC7074745 DOI: 10.3390/microorganisms8020257] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2020] [Revised: 01/28/2020] [Accepted: 01/29/2020] [Indexed: 11/18/2022] Open
Abstract
Cold-adapted microorganisms represent a large fraction of biomass on Earth because of the dominance of low-temperature environments. Extreme cold environments are mainly dependent on microbial activities because this climate restricts higher plants and animals. Himalaya is one of the most important cold environments on Earth as it shares climatic similarities with the polar regions. It includes a wide range of ecosystems, from temperate to extreme cold, distributed along the higher altitudes. These regions are characterized as stressful environments because of the heavy exposure to harmful rays, scarcity of nutrition, and freezing conditions. The microorganisms that colonize these regions are recognized as cold-tolerant (psychrotolerants) or/and cold-loving (psychrophiles) microorganisms. These microorganisms possess several structural and functional adaptations in order to perform normal life processes under the stressful low-temperature environments. Their biological activities maintain the nutrient flux in the environment and contribute to the global biogeochemical cycles. Limited culture-dependent and culture-independent studies have revealed their diversity in community structure and functional potential. Apart from the ecological importance, these microorganisms have been recognized as source of cold-active enzymes and novel bioactive compounds of industrial and biotechnological importance. Being an important part of the cryosphere, Himalaya needs to be explored at different dimensions related to the life of the inhabiting extremophiles. The present review discusses the distinct facts associated with microbial ecology from the Himalayan cryosphere perspective.
Collapse
Affiliation(s)
- Kusum Dhakar
- Newe Ya’ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel;
| | - Anita Pandey
- Department of Biotechnology, Graphic Era (Deemed to be University), Bell Road, Clement Town, Dehradun 248002, India
- Correspondence:
| |
Collapse
|
179
|
Salwan R, Sharma V, Kasana RC, Gulati A. Bioprospecting Psychrotrophic Bacteria for Serine-Type Proteases from the Cold Areas of Western Himalayas. Curr Microbiol 2020; 77:795-806. [PMID: 31919673 DOI: 10.1007/s00284-020-01876-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Accepted: 01/03/2020] [Indexed: 11/28/2022]
Abstract
The aim of present study was to analyze the prevalence of protease diversity among psychrotrophic bacteria in Lahaul and Spiti of the Western Himalayas. A total of 459 bacteria were screened and protease activity was observed in 150 isolates at 5 °C. Furthermore, 55 isolates showed protease activity up to pH 10 at 5 °C. Based on the hydrolytic zone, 22 isolates were selected for protease quantification. The protease activity varied from 58-377 U mL-1 at 10 °C, 49-396 U mL-1 at 28 °C and 31-407 U mL-1 at 37 °C. Similarly, protease activity ranged from 36-353 U mL-1 at pH 7, 40-306 U mL-1 at pH 9 and 33-304 U mL-1 at pH 10. The isolates were identified based on 16S rRNA gene sequencing and showed phylogenetic relationship to Arthrobacter belonging to the class Actinobacteria, Bacillus, Exiguobacterium, Paenibacillus, and Planomicrobium to Bacilli, and Pseudomonas, Serratia, and Stenotrophomonas to Gammaproteobacteria. Zymogram analysis revealed variations in protease isoforms ranging from 20 to 250 kDa which were strongly inhibited in the presence of phenylmethylsulfonyl fluoride, thus indicated serine-type nature. The extensive number of serine proteases among these bacteria was confirmed by annotating genomes of the reported genera for prevalence of protease isoforms. The properties of proteases including low-temperature activity with alkaline stability and detergent compatibility suggested their suitability as bio-additives in laundry.
Collapse
Affiliation(s)
- Richa Salwan
- Academy of Scientific and Innovative Research, New Delhi, India. .,CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India. .,College of Horticulture and Forestry (Dr. YSP-University of Horticulture and Forestry), Neri, Hamirpur, Himachal Pradesh, 177 001, India.
| | - Vivek Sharma
- CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.,University Centre for Research and Development, Chandigarh University, Gharuan, Mohali (PB.), India
| | - Ramesh Chand Kasana
- Academy of Scientific and Innovative Research, New Delhi, India.,CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.,Central Arid Zone Research Institute, Jodhpur, 342 003, India
| | - Arvind Gulati
- Academy of Scientific and Innovative Research, New Delhi, India.,CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India
| |
Collapse
|
180
|
Wang HB, Zeng F, Wang YY, Li X, S. H., Li YM, Wang YF, Liu YH, Lu FP. Evaluation of the site-unspecified peptide identification method for proteolytic peptide mapping. RSC Adv 2020; 10:37182-37186. [PMID: 35521240 PMCID: PMC9057140 DOI: 10.1039/d0ra04226a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Accepted: 09/18/2020] [Indexed: 11/21/2022] Open
Abstract
The site-unspecific method could successfully identify most of the peptides from tryptic hydrolysates revealed by site-specific identification.
Collapse
Affiliation(s)
- H. B. Wang
- Key Laboratory of Industrial Fermentation Microbiology
- Ministry of Education
- Tianjin Key Laboratory of Industrial Microbiology
- National Engineering Laboratory for Industrial Enzymes
- The College of Biotechnology
| | - F. Zeng
- Key Laboratory of Industrial Fermentation Microbiology
- Ministry of Education
- Tianjin Key Laboratory of Industrial Microbiology
- National Engineering Laboratory for Industrial Enzymes
- The College of Biotechnology
| | - Y. Y. Wang
- Key Laboratory of Industrial Fermentation Microbiology
- Ministry of Education
- Tianjin Key Laboratory of Industrial Microbiology
- National Engineering Laboratory for Industrial Enzymes
- The College of Biotechnology
| | - X. Li
- Key Laboratory of Industrial Fermentation Microbiology
- Ministry of Education
- Tianjin Key Laboratory of Industrial Microbiology
- National Engineering Laboratory for Industrial Enzymes
- The College of Biotechnology
| | - S. H.
- Key Laboratory of Industrial Fermentation Microbiology
- Ministry of Education
- Tianjin Key Laboratory of Industrial Microbiology
- National Engineering Laboratory for Industrial Enzymes
- The College of Biotechnology
| | - Y. M. Li
- Key Laboratory of Industrial Fermentation Microbiology
- Ministry of Education
- Tianjin Key Laboratory of Industrial Microbiology
- National Engineering Laboratory for Industrial Enzymes
- The College of Biotechnology
| | - Y. F. Wang
- Key Laboratory of Industrial Fermentation Microbiology
- Ministry of Education
- Tianjin Key Laboratory of Industrial Microbiology
- National Engineering Laboratory for Industrial Enzymes
- The College of Biotechnology
| | - Y. H. Liu
- Key Laboratory of Industrial Fermentation Microbiology
- Ministry of Education
- Tianjin Key Laboratory of Industrial Microbiology
- National Engineering Laboratory for Industrial Enzymes
- The College of Biotechnology
| | - F. P. Lu
- Key Laboratory of Industrial Fermentation Microbiology
- Ministry of Education
- Tianjin Key Laboratory of Industrial Microbiology
- National Engineering Laboratory for Industrial Enzymes
- The College of Biotechnology
| |
Collapse
|
181
|
Sangtitanu T, Sangtanoo P, Srimongkol P, Saisavoey T, Reamtong O, Karnchanatat A. Peptides obtained from edible mushrooms: Hericium erinaceus offers the ability to scavenge free radicals and induce apoptosis in lung cancer cells in humans. Food Funct 2020; 11:4927-4939. [DOI: 10.1039/d0fo00227e] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
This research examined the antioxidant abilities of peptides derived from the Hericium erinaceus mushroom produced via three microbial proteases at varying concentrations.
Collapse
Affiliation(s)
- Taniya Sangtitanu
- Program in Biotechnology
- Faculty of Science
- Chulalongkorn University
- Bangkok 10330
- Thailand
| | - Papassara Sangtanoo
- Research Unit in Bioconversion/Bioseparation for Value-Added Chemical Production
- Institute of Biotechnology and Genetic Engineering
- Chulalongkorn University
- Bangkok 10330
- Thailand
| | - Piroonporn Srimongkol
- Research Unit in Bioconversion/Bioseparation for Value-Added Chemical Production
- Institute of Biotechnology and Genetic Engineering
- Chulalongkorn University
- Bangkok 10330
- Thailand
| | - Tanatorn Saisavoey
- Research Unit in Bioconversion/Bioseparation for Value-Added Chemical Production
- Institute of Biotechnology and Genetic Engineering
- Chulalongkorn University
- Bangkok 10330
- Thailand
| | - Onrapak Reamtong
- Department of Molecular Tropical Medicine and Genetics
- Faculty of Tropical Medicine
- Mahidol University
- Bangkok 10400
- Thailand
| | - Aphichart Karnchanatat
- Research Unit in Bioconversion/Bioseparation for Value-Added Chemical Production
- Institute of Biotechnology and Genetic Engineering
- Chulalongkorn University
- Bangkok 10330
- Thailand
| |
Collapse
|
182
|
Thamamsena R, Liu DC. Antioxidant and antimicrobial activities of different enzymatic hydrolysates from desalted duck egg white. ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES 2019; 33:1487-1496. [PMID: 32054192 PMCID: PMC7468171 DOI: 10.5713/ajas.19.0361] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Accepted: 11/12/2019] [Indexed: 02/07/2023]
Abstract
Objective The objective of this study was to look for optimal preparation of hydrolysates of desalted duck egg white powder (DDEWP) by the three different proteases and to investigate their antioxidant and antimicrobial properties. Methods DDEWP was hydrolyzed by three proteases, including pepsin (PEP), Bacillus spp. (BA) and natokinase (NAT) with three different enzyme concentrations (0.1%, 0.3%, and 0.5%), individually. The important key hydrolysis parameters such as hydrolysis degree, yield, antioxidant and antimicrobial activity were evaluated in this experiment. Results The results showed that the degree of hydrolysis (DH) of all treatments increased with increasing hydrolysis time and protease concentrations. The antioxidant and antimicrobial activities of the hydrolysates were affected by type and concentration of protease as well as hydrolysis time. Hydrolysis of PEP significantly (p<0.05) obtained the highest yield of hydrolysates, however, both of BA and NAT showed substantially lower DH values and still did not exceed 5% by the end of hydrolysis. Among the different hydrolysates, PEP exhibited significantly higher 2, 2–diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity than BA and NAT. All DDEWP hydrolysates from PEP had low ferrous ion chelating activity (<37%) that was significantly lower than that of NAT (>37% to 92%) and BA (30% to 79%). Besides, DDEWP hydrolysates of PEP presented significantly higher reducing power than BA and NAT. In antimicrobial activities, Escherichia coli, Salmonella typhimurium, and Pseudomonas aeruginosa were not effectively inhibited by any DDEWP hydrolysates of PEP except for Staphylococcus aureus. Especially, the excellent antibacterial activity against S. aureus only was displayed in DDEWP hydrolysates of PEP 0.1%. Conclusion DDEWP hydrolysates from PEP demonstrated significantly better DH, yield, DPPH radical scavenging activity and reducing power, furthermore, had excellent inhibitory on S. aureus due to large clear zone and moderated inhibitory in bactericidal inhibition.
Collapse
Affiliation(s)
- Rommanee Thamamsena
- Department of Animal Science, National Chung Hsing University, Taichung 40227, Taiwan
| | - Deng Cheng Liu
- Department of Animal Science, National Chung Hsing University, Taichung 40227, Taiwan
| |
Collapse
|
183
|
Kaabel S, Friščić T, Auclair K. Mechanoenzymatic Transformations in the Absence of Bulk Water: A More Natural Way of Using Enzymes. Chembiochem 2019; 21:742-758. [PMID: 31651073 DOI: 10.1002/cbic.201900567] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Indexed: 12/21/2022]
Affiliation(s)
- Sandra Kaabel
- Department of ChemistryMcGill University 801 Sherbrooke Street West Montreal QC H3A 0B8 Canada
| | - Tomislav Friščić
- Department of ChemistryMcGill University 801 Sherbrooke Street West Montreal QC H3A 0B8 Canada
| | - Karine Auclair
- Department of ChemistryMcGill University 801 Sherbrooke Street West Montreal QC H3A 0B8 Canada
| |
Collapse
|
184
|
Darwesh OM, Ali SS, Matter IA, Elsamahy T, Mahmoud YA. Enzymes immobilization onto magnetic nanoparticles to improve industrial and environmental applications. Methods Enzymol 2019; 630:481-502. [PMID: 31931999 DOI: 10.1016/bs.mie.2019.11.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Enzymes as specific natural biocatalysts are present in all living organisms and they play a key role in the biochemical reactions inside, as outside the cell. Despite the wide range of environmental, medical, agricultural, and food applications, the high cost, non-reusability, and limited stability of soluble (non-immobilized) enzymes are considered barriers to their commercial application. Immobilization techniques are an effective strategy for solving problems associated with free enzymes in terms of improving the efficiency and stability of catalytic enzymes, as well as enhancing their separation and reusability in continuous industrial applications. Out of different supporting materials, magnetic nanoparticles are considered as the future trend for enzyme immobilization due to their exceptional properties regarding stabilization, easy recovery and reuse. Some recent techniques of enzyme immobilization on magnetic nanoparticles will be detailed hereafter in the chapter.
Collapse
Affiliation(s)
- Osama M Darwesh
- Agriculture Microbiology Department, National Research Centre, Dokki, Cairo, Egypt.
| | - Sameh S Ali
- Botany Department, Faculty of Science, Tanta University, Tanta, Egypt; Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang, China
| | - Ibrahim A Matter
- Agriculture Microbiology Department, National Research Centre, Dokki, Cairo, Egypt
| | - Tamer Elsamahy
- Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang, China
| | - Yehia A Mahmoud
- Botany Department, Faculty of Science, Tanta University, Tanta, Egypt
| |
Collapse
|