201
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Patel P, Wang J, Wilson AK. Prediction of pK a s of Late Transition-Metal Hydrides via a QM/QM Approach. J Comput Chem 2020; 41:171-183. [PMID: 31495951 DOI: 10.1002/jcc.26057] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Accepted: 08/04/2019] [Indexed: 11/09/2022]
Abstract
Three implicit solvation models, the conductor-like polarizable continuum model (C-PCM), the conductor-like screening model (COSMO), and universal implicit solvent model (SMD), combined with a hybrid two layer QM/QM approach (ONIOM), were utilized to calculate the pKa values, using a direct thermodynamic scheme, of a set of Group 10 transition metal (TM) hydrides in acetonitrile. To obtain the optimal combination of quantum methods for ONIOM calculations with implicit solvation models, the influence of factors, such as the choice of density functional and basis set, the atomic radii used to build a cavity in the solvent, and the size of the model system in an ONIOM scheme, was examined. Additionally, the impact of Grimme's empirical dispersion correction and exact exchange was also investigated. The results were calibrated by experimental data. This investigation provides insight about effective models for the prediction of thermodynamic properties of TM-containing complexes with bulky ligands. © 2019 Wiley Periodicals, Inc.
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Affiliation(s)
- Prajay Patel
- Department of Chemistry and Center for Advanced Scientific Computing and Modeling (CASCaM), University of North Texas, Denton, Texas, 76203-5017.,Department of Chemistry, Michigan State University, East Lansing, Michigan, 48824-1322
| | - Jiaqi Wang
- Department of Chemistry and Center for Advanced Scientific Computing and Modeling (CASCaM), University of North Texas, Denton, Texas, 76203-5017.,Department of Chemistry, Beijing Forestry University, Beijing, China, 100083
| | - Angela K Wilson
- Department of Chemistry and Center for Advanced Scientific Computing and Modeling (CASCaM), University of North Texas, Denton, Texas, 76203-5017.,Department of Chemistry, Michigan State University, East Lansing, Michigan, 48824-1322
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202
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Kumar A, Mallick S, Mishra BK, Kumar P. Effect of ammonia and formic acid on the CH 3O˙ + O 2 reaction: a quantum chemical investigation. Phys Chem Chem Phys 2020; 22:2405-2413. [PMID: 31939476 DOI: 10.1039/c9cp04612g] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In the present work, the catalytic effect of ammonia and formic acid on the CH3O˙ + O2 reaction has been investigated employing the MN15L density functional. The investigations suggest that, in the presence of ammonia, the reaction can proceed through two different pathways, namely a single hydrogen atom transfer and a double hydrogen atom transfer path, but due to the high energy barrier associated with the double hydrogen atom transfer channel, it prefers the single hydrogen atom transfer channel. On the other hand, in the case of formic acid, only the single hydrogen atom transfer path is found to be feasible. Interestingly, it has been found that, in the presence of ammonia and formic acid, the reaction becomes a barrierless reaction. The calculated rate constant values at various temperatures indicate an anti-Arrhenius behavior for both the ammonia and formic acid catalyzed channels.
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Affiliation(s)
- Amit Kumar
- Department of Chemistry, Malaviya National Institute of Technology Jaipur, Jaipur, 302017, India.
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203
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Wu J, Gao LG, Ren W, Truhlar DG. Anharmonic kinetics of the cyclopentane reaction with hydroxyl radical. Chem Sci 2020; 11:2511-2523. [PMID: 34084417 PMCID: PMC8157450 DOI: 10.1039/c9sc05632g] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 01/14/2020] [Indexed: 12/02/2022] Open
Abstract
Cyclopentane is one of the major constituents of transportation fuels, especially jet fuel and diesel, and also is a volatile organic compound with a significant presence in the atmosphere. Hydrogen abstraction from cyclopentane by hydroxyl radical plays a significant role in combustion and atmospheric chemistry. In this work we study the kinetics of this reaction at 200-2000 K using direct dynamics calculations in which the potential energy surface is obtained by quantum mechanical electronic structure calculations. The forward and reverse barrier heights and reaction energies obtained by the CCSD(T)-F12a/jun-cc-pVTZ coupled cluster calculations are used as a benchmark to select an accurate electronic structure method among 36 combinations of exchange-correlation functional and basis set. The selected M06-2X/MG3S method shows the best performance with a mean unsigned deviation from the benchmark of only 0.22 kcal mol-1 for reaction energies and barrier heights. A quadratic-quartic function is adopted to describe the ring bending potential of cyclopentane, and the quartic anharmonicity in the bending mode is treated by a one-dimensional Schrödinger equation using both Wentzel-Kramers-Brillouin (WKB) and Fourier Grid Hamiltonian (FGH) methods. The torsional anharmonicity in the transition state is treated in turn by the free rotor approximation, the one-dimensional hindered rotor approximation, and the multi-structural torsional anharmonicity method. Rate constants of the title reaction are computed by canonical variational transition state theory including tunneling by the multi-dimensional small-curvature tunneling approximation (CVT/SCT). The final rate constants include the quasiharmonic, quadratic-quartic, and torsional anharmonicity. Our calculations are in excellent agreement with all the experimental data available at both combustion and atmospheric temperatures with a deviation of less than 30%.
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Affiliation(s)
- Junjun Wu
- Department of Mechanical and Automation Engineering, Shenzhen Research Institute, The Chinese University of Hong Kong New Territories Hong Kong SAR China
- Department of Chemistry, Chemical Theory Center and Supercomputing Institute, University of Minnesota Minneapolis USA
| | - Lu Gem Gao
- Department of Chemistry, Chemical Theory Center and Supercomputing Institute, University of Minnesota Minneapolis USA
- Center for Combustion Energy, Department of Energy and Power Engineering, Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University Beijing China
| | - Wei Ren
- Department of Mechanical and Automation Engineering, Shenzhen Research Institute, The Chinese University of Hong Kong New Territories Hong Kong SAR China
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center and Supercomputing Institute, University of Minnesota Minneapolis USA
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204
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Gusev DG. Revised Mechanisms of the Catalytic Alcohol Dehydrogenation and Ester Reduction with the Milstein PNN Complex of Ruthenium. Organometallics 2020. [DOI: 10.1021/acs.organomet.9b00542] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Dmitry G. Gusev
- Department of Chemistry and Biochemistry, Wilfrid Laurier University, Waterloo, Ontario N2L 3C5 Canada
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205
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Jeffries B, Wang Z, Felstead HR, Le Questel JY, Scott JS, Chiarparin E, Graton J, Linclau B. Systematic Investigation of Lipophilicity Modulation by Aliphatic Fluorination Motifs. J Med Chem 2020; 63:1002-1031. [DOI: 10.1021/acs.jmedchem.9b01172] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Benjamin Jeffries
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, U.K
| | - Zhong Wang
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, U.K
| | - Hannah R. Felstead
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, U.K
| | - Jean-Yves Le Questel
- CEISAM UMR CNRS 6230, Faculté des Sciences et des Techniques, Université de Nantes 2, rue de la Houssinière − BP 92208, 44322 Nantes Cedex 3, France
| | - James S. Scott
- Medicinal Chemistry, Oncology R&D, AstraZeneca, Cambridge CB40WG, U.K
| | | | - Jérôme Graton
- CEISAM UMR CNRS 6230, Faculté des Sciences et des Techniques, Université de Nantes 2, rue de la Houssinière − BP 92208, 44322 Nantes Cedex 3, France
| | - Bruno Linclau
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, U.K
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206
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Domingo LR, Seif A, Mazarei E, Zahedi E, Ahmadi TS. A molecular electron density theory (MEDT) study of the role of halogens (X 2 = F 2, Cl 2, Br 2 and I 2) on the aza-Michael-addition reactions. NEW J CHEM 2020. [DOI: 10.1039/d0nj04203j] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The energy profile for gas phase F2-catalyzed nucleophilic attack of PYR R1 on the β-conjugated carbon of MA R2 marked.
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Affiliation(s)
- Luis R. Domingo
- Department of Organic Chemistry
- University of Valencia
- 46100 Burjassot
- Spain
| | - Ahmad Seif
- Department of Organic Chemistry
- University of Valencia
- 46100 Burjassot
- Spain
- Department of Chemistry
| | - Elham Mazarei
- Department of Organic Chemistry
- University of Valencia
- 46100 Burjassot
- Spain
| | - Ehasn Zahedi
- Department of Chemistry
- Shahrood Branch
- Islamic Azad University
- Shahrood
- Iran
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207
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Lonsdale DR, Goerigk L. The one-electron self-interaction error in 74 density functional approximations: a case study on hydrogenic mono- and dinuclear systems. Phys Chem Chem Phys 2020; 22:15805-15830. [PMID: 32458849 DOI: 10.1039/d0cp01275k] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The self-interaction error (SIE), i.e. unphysical interactions of electrons with themselves, has plagued developers and users of Density Functional Approximations (DFAs) since the inception of Density Functional Theory (DFT). Formally, it can be separated into the one-electron and many-electron SIE; herein we present one of the most comprehensive studies of the first. While we focus mostly on the total SIE, we also make use of two different decompositions. The first is a separation into functional and density-driven errors as championed by Sim, Burke and co-workers [J. Phys. Chem. Lett., 2018, 9, 6385-6392]; the second separates the error into exchange, correlation, and one-electron components, with the latter being a density error that has not been discussed in this form before. After investigating the familiar hydrogen atom and dihydrogen cation, we establish a relationship between the SIE and the nuclear charge with the help of a series of heavier hydrogenic analogues. For the mononuclear systems and the diatomics at the dissociation limit, this relationship is linear in nature with prominent exceptions, mostly belonging to the Minnesota and range-separated (double-)hybrid DFAs. For the first time, we also show how the magnitude of the SIE depends on the underlying atomic-orbital basis set and how DFAs that rely on a popular van-der-Waals DFT type London-dispersion term exhibit "self-dispersion". We find that range separation is not a panacea for solving the one-electron SIE. DFAs that have been developed to be one-electron SIE free for one system, such as the hydrogen atom, show larger errors for heavier hydrogenic systems. Often, one-electron SIE-free DFAs rely on fortuitous error cancellation between their exchange and correlation components. An analysis of the most robust methods for general applications to date reveals that they suffer moderately from the one-electron SIE, while DFAs that are nearly SIE-free do not perform well in applications. Implicit in the continued existence of the one-electron SIE is that well-performing DFAs continue to suffer insufficiencies at their fundamental levels that are being compensated for by the SIE. Our analysis includes more than 250 000 datapoints, resulting in multiple insights that may drive future developments of new DFAs or SIE corrections.
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Affiliation(s)
- Dale R Lonsdale
- School of Chemistry, The University of Melbourne, Parkville, Australia.
| | - Lars Goerigk
- School of Chemistry, The University of Melbourne, Parkville, Australia.
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208
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Constantinides CP, Lawson DB, Zissimou GA, Berezin AA, Mailman A, Manoli M, Kourtellaris A, Leitus GM, Clérac R, Tuononen HM, Koutentis PA. Polymorphism in a π stacked Blatter radical: structures and magnetic properties of 3-(phenyl)-1-(pyrid-2-yl)-1,4-dihydrobenzo[e][1,2,4]triazin-4-yl. CrystEngComm 2020. [DOI: 10.1039/d0ce00789g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The first polymorphism example in Blatter radicals, is reported.
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Affiliation(s)
| | - Daniel B. Lawson
- Department of Natural Sciences
- University of Michigan-Dearborn
- Dearborn
- USA
| | | | | | - Aaron Mailman
- Department of Chemistry
- NanoScience Center
- University of Jyväskylä
- FI-40014 Jyväskylä
- Finland
| | - Maria Manoli
- Department of Chemistry
- University of Cyprus
- 1678 Nicosia
- Cyprus
| | | | - Gregory M. Leitus
- Chemical Research Support Unit
- Weizmann Institute of Science
- 7610001 Rehovot
- Israel
| | - Rodolphe Clérac
- Univ. Bordeaux
- CNRS
- Centre de Recherche Paul Pascal
- 33600 Pessac
- France
| | - Heikki M. Tuononen
- Department of Chemistry
- NanoScience Center
- University of Jyväskylä
- FI-40014 Jyväskylä
- Finland
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209
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Miyazawa T, Tanabe Y, Nakamura I, Shinke Y, Hiza M, Choe YK, Fujitani T. Fundamental roles of ZnO and ZrO 2 in the conversion of ethanol to 1,3-butadiene over ZnO–ZrO 2/SiO 2. Catal Sci Technol 2020. [DOI: 10.1039/d0cy01453b] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
ZnO and ZrO2 sites in the ZnO–ZrO2/SiO2 catalyst act cooperatively to catalyze different steps of the conversion of ethanol to 1,3-butadiene.
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Affiliation(s)
- Tomohisa Miyazawa
- Interdisciplinary Research Center for Catalytic Chemistry
- National Institute of Advanced Industrial Science and Technology (AIST)
- Tsukuba
- Japan
| | - Yusuke Tanabe
- Research Association of High-Throughput Design and Development for Advanced Functional Materials (ADMAT)
- Tsukuba
- Japan
- Advanced Materials Innovation Team
- R&D Center
| | - Isao Nakamura
- Interdisciplinary Research Center for Catalytic Chemistry
- National Institute of Advanced Industrial Science and Technology (AIST)
- Tsukuba
- Japan
| | - Yu Shinke
- Research Association of High-Throughput Design and Development for Advanced Functional Materials (ADMAT)
- Tsukuba
- Japan
- Advanced Materials Innovation Team
- R&D Center
| | - Misao Hiza
- Advanced Materials Innovation Team
- R&D Center
- The Yokohama Rubber Co., Ltd
- Hiratsuka
- Japan
| | - Yoong-Kee Choe
- Research Center for Computational Design of Advanced Functional Materials (CD-FMat)
- National Institute of Advanced Industrial Science and Technology (AIST)
- Tsukuba
- Japan
| | - Tadahiro Fujitani
- Interdisciplinary Research Center for Catalytic Chemistry
- National Institute of Advanced Industrial Science and Technology (AIST)
- Tsukuba
- Japan
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210
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Juanes M, Saragi RT, Pinacho R, Rubio JE, Lesarri A. Sulfur hydrogen bonding and internal dynamics in the monohydrates of thenyl mercaptan and thenyl alcohol. Phys Chem Chem Phys 2020; 22:12412-12421. [DOI: 10.1039/d0cp01706j] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Water forms weak H-bonds with thenyl compounds, simultaneously retaining internal mobility in the dimer.
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Affiliation(s)
- Marcos Juanes
- Departamento de Química Física y Química Inorgánica and I.U. CINQUIMA
- Facultad de Ciencias
- Universidad de Valladolid, Paseo de Belén, 7
- 47011 Valladolid
- Spain
| | - Rizalina Tama Saragi
- Departamento de Química Física y Química Inorgánica and I.U. CINQUIMA
- Facultad de Ciencias
- Universidad de Valladolid, Paseo de Belén, 7
- 47011 Valladolid
- Spain
| | - Ruth Pinacho
- Departamento de Electrónica
- Escuela de Ingeniería de Telecomunicaciones
- Universidad de Valladolid
- Paseo de Belén, 15
- 47011 Valladolid
| | - José E. Rubio
- Departamento de Electrónica
- Escuela de Ingeniería de Telecomunicaciones
- Universidad de Valladolid
- Paseo de Belén, 15
- 47011 Valladolid
| | - Alberto Lesarri
- Departamento de Química Física y Química Inorgánica and I.U. CINQUIMA
- Facultad de Ciencias
- Universidad de Valladolid, Paseo de Belén, 7
- 47011 Valladolid
- Spain
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211
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Seif A, Domingo LR, Zahedi E, Ahmadi TS, Mazarei E. Unraveling the kinetics and molecular mechanism of gas phase pyrolysis of cubane to [8]annulene. RSC Adv 2020; 10:32730-32739. [PMID: 35516465 PMCID: PMC9056628 DOI: 10.1039/d0ra05371f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 08/25/2020] [Indexed: 12/28/2022] Open
Abstract
The kinetic and electron density flows are studied theoretically for the gas phase pyrolysis of cubane via its cage opening to reach bicyclooctatriene and then thermal rearrangement of bicyclooctatriene to produce [8]annulene which is the experimentally observed major product. The observed kinetic data at the MN15-L/maug-cc-pVTZ level of theory were in good agreement with the experimental results as compared to the CBS-QB3 method. The cage opening and the thermal rearrangement steps at the experimentally employed temperature of 520 K were exergonic and exothermic. The atmospheric rate constants calculated by means of the RRKM theory show that the cage opening is the rate-determining step. The temperature dependence of the rate constant for the cage opening step at the MN15-L level can be expressed as log(k/s−1)1barMN15-L = (15.63) − (48.99 kcal mol−1)/RT ln 10. The molecular mechanism of the reactions has been investigated by means of the bonding evolution theory (BET) at the B3LYP/6-311G (d,p) level of theory. The cage opening course is described topologically by cleaving of C1–C2, C4–C8, and C5–C6 single bonds and electron saturation of the C1–C4, C2–C6, and C5–C8 bonds, while the rearrangement of bicyclooctatriene is described by C3–C7 bond rupture, depopulation of C1–C4 and C5–C8 double bonds, and electron saturation of C1–C5, C3–C4, and C7–C8 bonds. Electron density rearrangement along the two successive steps are asynchronous and the sequence of catastrophes can be represented as: η-1-13-C†C†FFFC†C†FFFC†C†-2-6-[C]2C†[F]2[C†]2C†-0. Kinetic and electron density flows are studied theoretically for the gas phase pyrolysis of cubane via its cage opening to bicyclooctatriene and then thermal rearrangement of bicyclooctatriene to produce [8]annulene which is the experimentally observed major product.![]()
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Affiliation(s)
- Ahmad Seif
- Department of Chemistry
- Central Tehran Branch
- Islamic Azad University
- Tehran
- Iran
| | - Luis R. Domingo
- Department of Organic Chemistry
- University of Valencia
- Valencia
- Spain
| | - Ehsan Zahedi
- Department of Chemistry
- Shahrood Branch
- Islamic Azad University
- Shahrood
- Iran
| | | | - Elham Mazarei
- Department of Organic Chemistry
- University of Valencia
- Valencia
- Spain
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212
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Xing L, Wang Z, Truhlar DG. Multistructural Anharmonicity Controls the Radical Generation Process in Biofuel Combustion. J Am Chem Soc 2019; 141:18531-18543. [PMID: 31637914 DOI: 10.1021/jacs.9b09194] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The OH radical plays an important role in combustion, and isopentanol (3-methylbutan-1-ol) is a promising sustainable fuel additive and second-generation biofuel. The abstractions of H atoms from fuel molecules are key initiation steps for chain branching in combustion chemistry. In comparison with the more frequently studied ethanol, isopentanol has a longer carbon chain that allows a greater number of products, and experimental work is unavailable for the branching fractions to the various products. However, the site-dependent kinetics of isopentanol with OH radicals are usually experimentally unavailable. Alcohol oxidation by OH is also important in the atmosphere, and in the present study we calculate the rate constants and branching fractions of the hydrogen abstraction reaction of isopentanol by OH radical in a broad temperature range of 298-2400 K, covering temperatures important for atmospheric chemistry and those important for combustion. The calculations are done by multipath variational transition state theory (MP-VTST). With a combination of electronic structure calculations, we determine previously missing thermochemical data. With MP-VTST, a multidimensional tunneling approximation, multiple-structure anharmonicity, and torsional potential anharmonicity, we carried out more realistic rate constant calculations than can be computed by conventional single-structure harmonic transition state theory or by the empirical relations that are currently used in atmospheric and combustion modeling. The roles of various factors in determining the rates are elucidated, and we show that recrossing, tunneling, and multiple structures are all essential for accurate work. We conclude that the multiple structure anharmonicity is the most important correction to conventional transition state theory for this reaction, although recrossing effects and tunneling are by no means insignificant and the tunneling depends significantly on the path. The thermodynamic and kinetics data determined in this work are indispensable for the gas-phase degradation of alcohols in the atmosphere and for the detailed understanding and prediction of ignition mechanisms of biofuels in combustion.
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Affiliation(s)
- Lili Xing
- Energy and Power Engineering Institute , Henan University of Science and Technology , Luoyang , Henan 471003 , China.,Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , Minnesota 55455-0431 , United States
| | - Zhandong Wang
- National Synchrotron Radiation Laboratory , University of Science and Technology of China , Hefei , Anhui 230029 , PR China
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , Minnesota 55455-0431 , United States
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213
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Moltved KA, Kepp KP. Performance of Density Functional Theory for Transition Metal Oxygen Bonds. Chemphyschem 2019; 20:3210-3220. [DOI: 10.1002/cphc.201900862] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 10/01/2019] [Indexed: 11/09/2022]
Affiliation(s)
- Klaus A. Moltved
- Technical University of DenmarkDTU Chemistry, Building 206, 2800 Kgs. Lyngby DK – Denmark
| | - Kasper P. Kepp
- Technical University of DenmarkDTU Chemistry, Building 206, 2800 Kgs. Lyngby DK – Denmark
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214
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Schmidt J, Benavides-Riveros CL, Marques MAL. Machine Learning the Physical Nonlocal Exchange-Correlation Functional of Density-Functional Theory. J Phys Chem Lett 2019; 10:6425-6431. [PMID: 31596092 DOI: 10.1021/acs.jpclett.9b02422] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
We train a neural network as the universal exchange-correlation functional of density-functional theory that simultaneously reproduces both the exact exchange-correlation energy and the potential. This functional is extremely nonlocal but retains the computational scaling of traditional local or semilocal approximations. It therefore holds the promise of solving some of the delocalization problems that plague density-functional theory, while maintaining the computational efficiency that characterizes the Kohn-Sham equations. Furthermore, by using automatic differentiation, a capability present in modern machine-learning frameworks, we impose the exact mathematical relation between the exchange-correlation energy and the potential, leading to a fully consistent method. We demonstrate the feasibility of our approach by looking at one-dimensional systems with two strongly correlated electrons, where density-functional methods are known to fail, and investigate the behavior and performance of our functional by varying the degree of nonlocality.
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Affiliation(s)
- Jonathan Schmidt
- Institut für Physik , Martin-Luther-Universität Halle-Wittenberg , 06120 Halle (Saale) , Germany
| | | | - Miguel A L Marques
- Institut für Physik , Martin-Luther-Universität Halle-Wittenberg , 06120 Halle (Saale) , Germany
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215
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Usabiaga I, Camiruaga A, Calabrese C, Maris A, Fernández JA. Exploring Caffeine–Phenol Interactions by the Inseparable Duet of Experimental and Theoretical Data. Chemistry 2019; 25:14230-14236. [DOI: 10.1002/chem.201903478] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Indexed: 11/10/2022]
Affiliation(s)
- Imanol Usabiaga
- Department of Physical ChemistryUniversity of the Basque Country (UPV/EHU) Barrio Sarriena, S/N 48940 Leioa Spain
- Dipartimento di Chimica “Giacomo Ciamician”Università di Bologna via Selmi 2 40126 Bologna Italy
| | - Ander Camiruaga
- Department of Physical ChemistryUniversity of the Basque Country (UPV/EHU) Barrio Sarriena, S/N 48940 Leioa Spain
| | - Camilla Calabrese
- Department of Physical ChemistryUniversity of the Basque Country (UPV/EHU) Barrio Sarriena, S/N 48940 Leioa Spain
- Instituto Biofisika (UPV/EHU, CSIC)University of the Basque Country Leioa E-48080 Spain
| | - Assimo Maris
- Dipartimento di Chimica “Giacomo Ciamician”Università di Bologna via Selmi 2 40126 Bologna Italy
| | - José A. Fernández
- Department of Physical ChemistryUniversity of the Basque Country (UPV/EHU) Barrio Sarriena, S/N 48940 Leioa Spain
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216
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Lee J, Bertels LW, Small DW, Head-Gordon M. Kohn-Sham Density Functional Theory with Complex, Spin-Restricted Orbitals: Accessing a New Class of Densities without the Symmetry Dilemma. PHYSICAL REVIEW LETTERS 2019; 123:113001. [PMID: 31573235 DOI: 10.1103/physrevlett.123.113001] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Indexed: 06/10/2023]
Abstract
We show that using complex, spin-restricted orbitals in Kohn-Sham (KS) density functional theory allows one to access a new class of densities that is not accessible by either spin-restricted (RKS) or spin-unrestricted (UKS) orbitals. We further show that the real part of a complex RKS (CRKS) density matrix can be nonidempotent when the imaginary part of the density matrix is not zero. Using CRKS orbitals shows significant improvements in the triplet-singlet gaps of a benchmark set, called TS12, for well-established, widely used density functionals. Moreover, it was shown that RKS and UKS yield qualitatively wrong charge densities and spin densities, respectively, leading to worse energetics. We demonstrate that representative modern density functionals show surprisingly no improvement even with a qualitatively more accurate density from CRKS orbitals. To this end, our work not only provides a way to escape the symmetry dilemma whenever there exists a CRKS solution, but also suggests a new route to design better approximate density functionals.
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Affiliation(s)
- Joonho Lee
- College of Chemistry, University of California, Berkeley, California 94720, USA
| | - Luke W Bertels
- College of Chemistry, University of California, Berkeley, California 94720, USA
| | - David W Small
- College of Chemistry, University of California, Berkeley, California 94720, USA
| | - Martin Head-Gordon
- College of Chemistry, University of California, Berkeley, California 94720, USA
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217
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Methane functionalization by an Ir(III) catalyst supported on a metal–organic framework: an alternative explanation of steric confinement effects. Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2498-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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218
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Chen JY, Liao RZ. Mechanism and Regioselectivity of the Iron-Catalyzed Hydroboration of N-Heteroarenes: A Computational Study. Organometallics 2019. [DOI: 10.1021/acs.organomet.9b00292] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jia-Yi Chen
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Bioinorganic Chemistry and Materia Medica, Hubei Key Laboratory of Materials Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Rong-Zhen Liao
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Bioinorganic Chemistry and Materia Medica, Hubei Key Laboratory of Materials Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan 430074, China
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219
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Verma P, Janesko BG, Wang Y, He X, Scalmani G, Frisch MJ, Truhlar DG. M11plus: A Range-Separated Hybrid Meta Functional with Both Local and Rung-3.5 Correlation Terms and High Across-the-Board Accuracy for Chemical Applications. J Chem Theory Comput 2019; 15:4804-4815. [DOI: 10.1021/acs.jctc.9b00411] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Pragya Verma
- Department of Chemistry, Chemical Theory Center, Nanoporous Materials Genome Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Benjamin G. Janesko
- Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, Texas 76110, United States
| | - Ying Wang
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200062, China
- The National and Local Joint Engineering Laboratory of Animal Peptide Drug Development, College of Life Sciences, Hunan Normal University, Changsha, 410006, China
| | - Xiao He
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200062, China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 200062, China
| | | | | | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center, Nanoporous Materials Genome Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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220
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A computational DFT study of methane C H and ammine N H activations by group 9 N-pyrrolyl complexes. COMPUT THEOR CHEM 2019. [DOI: 10.1016/j.comptc.2019.112503] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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221
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Iron MA, Gropp J. Cost-effective density functional theory (DFT) calculations of equilibrium isotopic fractionation in large organic molecules. Phys Chem Chem Phys 2019; 21:17555-17570. [PMID: 31342034 DOI: 10.1039/c9cp02975c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The application of stable isotopes to address a wide range of biochemical, microbiological and environmental problems is hindered by the experimental difficulty and the computational cost of determining equilibrium isotopic fractionations (EIF) of large organic molecules. Here, we evaluate the factors that impact the accuracy of computed EIFs and develop a framework for cost-effective and accurate computation of EIFs by density functional theory (DFT). We generated two benchmark databases of experimentally determined EIFs, one for H isotopes and another for the isotopes of the heavy atoms C, N and O. The accuracy of several DFT exchange-correlation functionals in calculating EIFs was then evaluated by comparing the computational results to these experimental datasets. We find that with the def2-TZVP basis set, O3LYP had the lowest mean absolute deviation (21‰ and 3.9‰ for the isotopic fractionation of H and the heavier atoms, respectively), but the GGA/meta-GGA functionals τHCTHD3BJ, τHCTH and HCTH have similar performances (22‰ and 4.1‰, respectively, for τHCTHD3BJ). Leveraging the good performance of computationally efficient functionals, we provide a robust, practical, experimentally validated framework for using DFT to accurately predict EIFs of large organic molecules, including uncertainty estimates.
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Affiliation(s)
- Mark A Iron
- Computational Chemistry Unit, Department of Chemical Research Support, Weizmann Institute of Science, Rehovot, 7610001, Israel.
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222
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Mallick S, Kumar A, Mishra BK, Kumar P. Influence of water on the CH 3O˙ + O 2 → CH 2O + HO 2˙ reaction. Phys Chem Chem Phys 2019; 21:15734-15741. [PMID: 31276139 DOI: 10.1039/c9cp00720b] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Electronic structure calculations employing density functional theory have been used to study the effect of a single water molecule on the CH3O˙ + O2 → CH2O + HO2˙ reaction. The investigation suggests that in the presence of water the reaction barrier reduces from 3.01 kcal mol-1 to -1.86 kcal mol-1. Consequently, when we consider the bimolecular rate constants for the water catalyzed channel, they were found to be 104 to 105 times higher than that of the uncatalyzed reaction. Interestingly, the Arrhenius plot indicates a negative temperature dependency of the catalyzed channel (anti-Arrhenius behavior); as a result of this the domination of the catalyzed channel over the bare reaction increases with the lowering of the temperature. But the effective bimolecular rate constant values for the catalyzed channel were found to be approximately four orders of magnitude lower than that of the uncatalyzed one, which implies that the contribution of the catalyzed channels to the overall rate of the reaction is very small.
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Affiliation(s)
- Subhasish Mallick
- Department of Chemistry, Malaviya National Institute of Technology Jaipur, Jaipur, 302017, India.
| | - Amit Kumar
- Department of Chemistry, Malaviya National Institute of Technology Jaipur, Jaipur, 302017, India.
| | - Brijesh Kumar Mishra
- International Institute of Information Technology Bangalore, Bangalore, 560100, India
| | - Pradeep Kumar
- Department of Chemistry, Malaviya National Institute of Technology Jaipur, Jaipur, 302017, India.
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223
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Chan B. The CUAGAU Set of Coupled-Cluster Reference Data for Small Copper, Silver, and Gold Compounds and Assessment of DFT Methods. J Phys Chem A 2019; 123:5781-5788. [PMID: 31241947 DOI: 10.1021/acs.jpca.9b03976] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We have obtained benchmark data for a set of small molecular systems of Cu, Ag, and Au using coupled-cluster methods. Using this collection of reference data (that we termed the CUAGAU set) for assessing DFT-type methods, we find the MN15-L nonhybrid DFT to be cost-effective for geometry optimization [mean absolute deviation (MAD) in bond length = 0.20 Å], with an accuracy that is comparable to that for the double-hybrid (DH) DFT method DSD-PBEP86 (MAD = 0.19 Å). For the computation of thermochemical properties, among "conventional" (non-MP2-based) DFT methods, the best performance is found for the global-hybrid meta-GGA functional MN15, with an MAD of 11.4 kJ mol-1. We also find the nonhybrid method B97M-rV to have a reasonable performance (MAD = 14.4 kJ mol-1), and it may serve as a cost-effective means for qualitative study. If we look beyond conventional functionals, we find DSD-PBEP86 (MAD = 7.3 kJ mol-1) to be more accurate than even MN15. Nonetheless, this level of accuracy is still not sufficient for quantitative studies. In this regard, high-level wave function methods such as composite procedures that are based on coupled cluster are still indispensable for obtaining reliable reference data for transition-metal species.
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Affiliation(s)
- Bun Chan
- Graduate School of Engineering , Nagasaki University , Bunkyo 1-14 , Nagasaki 852-8521 , Japan
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224
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Liu J, Sun H, Glover WJ, He X. Prediction of Excited-State Properties of Oligoacene Crystals Using Fragment-Based Quantum Mechanical Method. J Phys Chem A 2019; 123:5407-5417. [PMID: 31187994 DOI: 10.1021/acs.jpca.8b12552] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
A fundamental understanding of the excited-state properties of molecular crystals is of central importance for their optoelectronics applications. In this study, we developed the electrostatically embedded generalized molecular fractionation (EE-GMF) method for the quantitative characterization of the excited-state properties of locally excited molecular clusters. The accuracy of the EE-GMF method is systematically assessed for oligoacene crystals. Our result demonstrates that the EE-GMF method is capable of providing the lowest vertical singlet (S1) and triplet excitation energies (T1), in excellent agreement with the full-system quantum mechanical calculations. Using this method, we also investigated the performance of different density functionals in predicting the excited-state properties of the oligoacene crystals. Among the 13 tested functionals, B3LYP and MN15 give the two lowest overall mean unsigned errors with reference to the experimental S1 and T1 excitation energies. The EE-GMF approach can be readily utilized for studying the excited-state properties of large-scale organic solids at diverse ab initio levels.
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Affiliation(s)
- Jinfeng Liu
- Department of Basic Medicine and Clinical Pharmacy , China Pharmaceutical University , Nanjing 210009 , China
| | | | - William J Glover
- NYU Shanghai , Shanghai 200122 , China.,NYU-ECNU Center for Computational Chemistry at NYU Shanghai , Shanghai 200062 , China.,Department of Chemistry , New York University , New York , New York 10003 , United States
| | - Xiao He
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai , Shanghai 200062 , China
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225
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226
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Hadidi S, Shiri F, Norouzibazaz M. Conversion mechanism and isomeric preferences of the cis and trans isomers of anti-cancer medicine carmustine; A double hybrid DFT calculation. Chem Phys 2019. [DOI: 10.1016/j.chemphys.2019.02.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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227
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Rapid unimolecular reaction of stabilized Criegee intermediates and implications for atmospheric chemistry. Nat Commun 2019; 10:2003. [PMID: 31043594 PMCID: PMC6494847 DOI: 10.1038/s41467-019-09948-7] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Accepted: 04/03/2019] [Indexed: 11/10/2022] Open
Abstract
Elucidating atmospheric oxidation mechanisms is necessary for estimating the lifetimes of atmospheric species and understanding secondary organic aerosol formation and atmospheric oxidation capacity. We report an unexpectedly fast mechanistic pathway for the unimolecular reactions of large stabilized Criegee intermediates, which involves the formation of bicyclic structures from large Criegee intermediates containing an aldehyde group. The barrier heights of the mechanistic pathways are unexpectedly low – about 2–3 kcal/mol – and are at least 10 kcal/mol lower than those of hydrogen shift processes in large syn Criegee intermediates; and the calculated rate constants show that the mechanistic pathways are 105-109 times faster than those of the corresponding hydrogen shift processes. The present findings indicate that analogous low-energy pathways can now also be expected in other large Criegee intermediates and that oxidative capacity of some Criegee intermediates is smaller than would be predicted by existing models. Criegee intermediates have received much attention in atmospheric chemistry because of their importance in ozonolysis mechanisms. Here, using quantum mechanical kinetics, the authors reveal an unexpectedly fast mechanistic pathway for unimolecular reactions of large stabilized Criegee intermediates.
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228
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Shiri F, Hadidi S, Rahimi-Nasrabadi M, Ahmadi F, Ganjali MR, Ehrlich H. Synthesis, characterization and DNA binding studies of a new ibuprofen-platinum(II) complex. J Biomol Struct Dyn 2019; 38:1119-1129. [PMID: 31012380 DOI: 10.1080/07391102.2019.1597769] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
The study is focused on the synthesis of a novel complex of ibuprofen and Platinum(II). The formation of the product was characterized through analytical tools including Fourier-transform infrared spectroscopy, proton nuclear magnetic resonance, ultraviolet-visible spectroscopy, mass spectrometry as well as density functional theory. Using the continuous variation method, the stoichiometry of Pt(HIb)2(Cl)2 binding on DNA (ct-DNA) determines as a single class of binding. Based on the results of Stern-Volmer analysis on the fluorescence quenching data, the quenching mechanism was determined to be static in nature. The studies indicated that the complex could bind DNA molecules via groove binding for four major reasons. Initially, the complex-DNA binding constant determined based on spectrophotometric data were found to be comparable to those of groove-binding drugs. In addition, the competitive fluorimetric based on the applications of Hoechst 33258 proved the ability of Pt(HIb)2(Cl)2 to displace with Hoechst in its DNA-bounded form, reflecting the competition between Pt(HIb)2(Cl)2 and Hoechst for groove binding. Further, no considerable changes were observed in the intensity of the methylene blue (MB)-DNA system after adding the Pt(HIb)2(Cl)2 complex, reflecting the stability of MB molecules in the DNA helix and a non-intercalative bonds of Pt(HIb)2(Cl)2 interaction on DNA. Finally, minor changes in the viscosity of DNA in the presence of Pt(HIb)2(Cl)2, indicated that changes in the length of DNA in the presence of the complex are negligible, supporting the assumption of DNA groove-binding. Also induced CD spectral changes and docking simulations were in favor of the groove mechanism for the Pt(HIb)2(Cl)2-DNA binding.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Farshad Shiri
- Chemical Injuries Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran.,Faculty of Pharmacy, Baqiyatallah University of Medical Sciences, Tehran, Iran
| | - Saba Hadidi
- Inorganic Chemistry Department, Faculty of Chemistry, Razi University, Kermanshah, Iran.,Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Mehdi Rahimi-Nasrabadi
- Chemical Injuries Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran.,Faculty of Pharmacy, Baqiyatallah University of Medical Sciences, Tehran, Iran
| | - Farhad Ahmadi
- Physiology Research Center, Iran University of Medical Sciences, Tehran, Iran.,Department of Medicinal Chemistry, School of Pharmacy-International Campus, Iran University of Medical Sciences, Tehran, Iran
| | - Mohammad Reza Ganjali
- Center of Excellence in Electrochemistry, University of Tehran, Tehran, Iran.,Biosensor Research Centre, Endocrinology & Metabolism Molecular and Cellular Research Institute, Tehran University of Medical Sciences, Tehran, Iran
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229
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Iron MA, Janes T. Evaluating Transition Metal Barrier Heights with the Latest Density Functional Theory Exchange-Correlation Functionals: The MOBH35 Benchmark Database. J Phys Chem A 2019; 123:3761-3781. [PMID: 30973722 DOI: 10.1021/acs.jpca.9b01546] [Citation(s) in RCA: 88] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A new database of transition metal reaction barrier heights (MOBH35) is presented. Benchmark energies (forward and reverse barriers and reaction energy) are calculated using DLPNO-CCSD(T) extrapolated to the complete basis set limit using a Weizmann-1-like scheme. Using these benchmark energies, the performance of a wide selection of density functional theory (DFT) exchange-correlation functionals, including the latest from the Martin, Truhlar, and Head-Gordon groups, is evaluated. It was found, using the def2-TZVPP basis set, that the ωB97M-V (MAD 1.7 kcal/mol), ωB97M-D3BJ (MAD 1.9 kcal/mol), ωB97X-V (MAD 2.0 kcal/mol), and revTPSS0-D4 (MAD 2.2 kcal/mol) hybrid functionals are recommended. The double-hybrid functionals B2K-PLYP (MAD 1.7 kcal/mol) and revDOD-PBEP86-D4 (MAD 1.8 kcal/mol) also performed well, but this has to be balanced by their increased computational cost.
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Affiliation(s)
- Mark A Iron
- Computational Chemistry Unit, Department of Chemical Research Support , Weizmann Institute of Science , Rehovot , Israel 7610001
| | - Trevor Janes
- Department of Organic Chemistry , Weizmann Institute of Science , Rehovot , Israel 7610001
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230
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Monomeric zinc(II) amide complexes supported by bidentate, benzannulated phenanthridine amido ligands. Polyhedron 2019. [DOI: 10.1016/j.poly.2019.01.023] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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231
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Radoń M. Benchmarking quantum chemistry methods for spin-state energetics of iron complexes against quantitative experimental data. Phys Chem Chem Phys 2019; 21:4854-4870. [PMID: 30778468 DOI: 10.1039/c9cp00105k] [Citation(s) in RCA: 72] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The accuracy of relative spin-state energetics predicted by selected quantum chemistry methods: coupled cluster theory at the CCSD(T) level, multiconfigurational perturbation theory (CASPT2, NEVPT2), multireference configuration interaction at the MRCISD+Q level, and a number of DFT methods, is quantitatively evaluated by comparison with the experimental data of four octahedral iron complexes. The available experimental data, either spin-forbidden transition energies or spin crossover enthalpies, are corrected for relevant environmental effects in order to derive the quantitative benchmark set of iron spin-state energetics. Comparison of theory predictions with the resulting reference data: (1) validates the high accuracy of the CCSD(T) method, particularly when based on Kohn-Sham orbitals, giving the maximum error below 2 kcal mol-1 and the mean absolute error (MAE) below 1 kcal mol-1; (2) corroborates the tendency of CASPT2 to systematically overstabilize higher-spin states by up to 5.5 kcal mol-1; (3) confirms that the latter problem is partly remedied by the recently proposed CASPT2/CC approach [Phung et al., J. Chem. Theory Comput., 2018, 14, 2446-2455]; (4) demonstrates that NEVPT2 performs worse than CASPT2, by giving errors up to 7 kcal mol-1; (5) shows that the accuracy of MRCISD+Q spin-state energetics strongly depends on the size-consistency correction: the Davidson-Silver and Pople corrections perform best (MAE < 3 kcal mol-1), whereas the standard Davidson correction is not recommended (MAE of 7 kcal mol-1). Only a few DFT methods (including the best performing ones identified in this study: B2PLYP-D3 and OPBE) are able to provide a balanced description of the spin-state energetics for all four studied iron complexes simultaneously, corroborating the non-universality problem of approximate density functionals.
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Affiliation(s)
- Mariusz Radoń
- Faculty of Chemistry, Jagiellonian University in Krakow, ul. Gronostajowa 2, 30-387 Kraków, Poland.
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232
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Cui CX, Xu D, Ding BW, Qu LB, Zhang YP, Lan Y. Benchmark study of popular density functionals for calculating binding energies of three-center two-electron bonds. J Comput Chem 2019; 40:657-670. [PMID: 30565268 DOI: 10.1002/jcc.25752] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Revised: 10/19/2018] [Accepted: 10/20/2018] [Indexed: 12/13/2022]
Abstract
Density functional theory (DFT) can be used to study the three-center two-electron (3c2e) bonding mode, which is universal in catalysts containing alkaline-earth (Ae) and boron-group (Bg) elements. However, because of the delocalization pattern of the 3c2e bond, the wavefunction cannot be accurately described by DFT methods. The calculated energies of Ae and Bg catalysts therefore fluctuate greatly when different functionals are used, largely because of inconsistent DFT-calculated binding energies of 3c2e bonds. Nevertheless, with the development of supercomputers and theoretical calculation software, the DFT method is becoming increasingly popular for studying Ae and Bg catalysts. In this study, we compared the performances of 21 functionals with the high-level composite G3B3 method in calculations for the binding energies of 3c2e bonds. Several frequently used post-Hartree-Fock methods were also tested. The calculation results indicate that the M06-2X, MN12-L, and MN15 functionals give consistent and reliable binding energies for common 3c2e bonds. © 2018 Wiley Periodicals, Inc.
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Affiliation(s)
- Cheng-Xing Cui
- Postdoctoral Station of Food Science and Engineering, College of Food Science and Engineering, Henan University of Technology, Zhengzhou 450001, People's Republic of China.,Postdoctoral Research Base, School of Chemistry and Chemical Engineering, Henan Institute of Science and Technology, Xinxiang 453003, People's Republic of China
| | - Dongdong Xu
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 400030, People's Republic of China
| | - Bo-Wen Ding
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, People's Republic of China
| | - Ling-Bo Qu
- Postdoctoral Station of Food Science and Engineering, College of Food Science and Engineering, Henan University of Technology, Zhengzhou 450001, People's Republic of China.,College of Chemistry and Molecular Engineering, Zhengzhou University, Zhengzhou 450001, People's Republic of China
| | - Yu-Ping Zhang
- Postdoctoral Research Base, School of Chemistry and Chemical Engineering, Henan Institute of Science and Technology, Xinxiang 453003, People's Republic of China
| | - Yu Lan
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 400030, People's Republic of China.,College of Chemistry and Molecular Engineering, Zhengzhou University, Zhengzhou 450001, People's Republic of China
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233
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Verma P, Wang Y, Ghosh S, He X, Truhlar DG. Revised M11 Exchange-Correlation Functional for Electronic Excitation Energies and Ground-State Properties. J Phys Chem A 2019; 123:2966-2990. [DOI: 10.1021/acs.jpca.8b11499] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Pragya Verma
- Department of Chemistry, Chemical Theory Center, Nanoporous Materials Genome Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Ying Wang
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
- The National and Local Joint Engineering Laboratory of Animal Peptide Drug Development, College of Life Sciences, Hunan Normal University, Changsha 410006, China
| | - Soumen Ghosh
- Department of Chemistry, Chemical Theory Center, Nanoporous Materials Genome Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Xiao He
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
- NYU-ECNU Center for Computational Chemistry, New York University, Shanghai, Shanghai 200062, China
| | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center, Nanoporous Materials Genome Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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234
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Constantinides CP, Lawson DB, Berezin AA, Zissimou GA, Manoli M, Leitus GM, Koutentis PA. Ferromagnetic interactions in a 1D Heisenberg linear chain of 1-phenyl-3,7-bis(trifluoromethyl)-1,4-dihydro-1,2,4-benzotriazin-4-yls. CrystEngComm 2019. [DOI: 10.1039/c9ce00739c] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
1-Phenyl-3,7-bis(trifluoromethyl)-1,4-dihydro-1,2,4-benzotriazin-4-yl (2), was characterized by single crystal X-ray diffractometry and variable temperature SQUID magnetometry to investigate its structure-magnetism correlation.
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Affiliation(s)
| | - Daniel B. Lawson
- Department of Natural Sciences
- University of Michigan – Dearborn
- Dearborn
- USA
| | | | | | - Maria Manoli
- Department of Chemistry
- University of Cyprus
- 1678 Nicosia
- Cyprus
| | - Gregory M. Leitus
- Department of Organic Chemistry
- Weizmann Institute of Science
- 76100 Rehovot
- Israel
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235
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Morgante P, Peverati R. Statistically representative databases for density functional theory via data science. Phys Chem Chem Phys 2019; 21:19092-19103. [DOI: 10.1039/c9cp03211h] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cluster analysis applied to quantum chemistry: a new broad database of chemical properties with a reasonable computational cost.
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236
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Yang B, Sharkas K, Gagliardi L, Truhlar DG. The effects of active site and support on hydrogen elimination over transition-metal-functionalized yttria-decorated metal–organic frameworks. Catal Sci Technol 2019. [DOI: 10.1039/c9cy01069f] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Transition-metal catalysts supported on a metal–organic framework have been screened computationally to reveal the best catalytic candidates for hydrogen elimination reactions, which are critical in many catalytic cycles.
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Affiliation(s)
- Bo Yang
- Department of Chemistry
- Inorganometallic Catalyst Design Center
- Chemical Theory Center
- and Minnesota Supercomputing Institute
- University of Minnesota
| | - Kamal Sharkas
- Department of Chemistry
- Inorganometallic Catalyst Design Center
- Chemical Theory Center
- and Minnesota Supercomputing Institute
- University of Minnesota
| | - Laura Gagliardi
- Department of Chemistry
- Inorganometallic Catalyst Design Center
- Chemical Theory Center
- and Minnesota Supercomputing Institute
- University of Minnesota
| | - Donald G. Truhlar
- Department of Chemistry
- Inorganometallic Catalyst Design Center
- Chemical Theory Center
- and Minnesota Supercomputing Institute
- University of Minnesota
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237
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Jana S, Samal P. Screened hybrid meta-GGA exchange–correlation functionals for extended systems. Phys Chem Chem Phys 2019; 21:3002-3015. [DOI: 10.1039/c8cp06715e] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Screened Hartree–Fock exchange integrated with semilocal exchange–correlation functionals often proficiently predict several solid-state properties.
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Affiliation(s)
- Subrata Jana
- School of Physical Sciences
- National Institute of Science Education and Research
- HBNI
- Bhubaneswar 752050
- India
| | - Prasanjit Samal
- School of Physical Sciences
- National Institute of Science Education and Research
- HBNI
- Bhubaneswar 752050
- India
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238
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Guo X, Zhang RM, Gao LG, Zhang X, Xu X. Computational kinetics of the hydrogen abstraction reactions of n-propanol and iso-propanol by OH radical. Phys Chem Chem Phys 2019; 21:24458-24468. [DOI: 10.1039/c9cp04809j] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The total reaction rate constants show a significant negative dependence on temperature in the low temperature regime and approach the capture rate for the formation of the pre-reactive complex when temperature is down to the ultracold regime.
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Affiliation(s)
- Xuan Guo
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education
- Tsinghua University
- Beijing 100084
- China
- State Key Laboratory of Chemical Resource Engineering, Beijing Advanced Innovation Center for Soft Matter Science and Engineering
| | - Rui Ming Zhang
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education
- Tsinghua University
- Beijing 100084
- China
| | - Lu Gem Gao
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education
- Tsinghua University
- Beijing 100084
- China
| | - Xin Zhang
- State Key Laboratory of Chemical Resource Engineering, Beijing Advanced Innovation Center for Soft Matter Science and Engineering
- Beijing University of Chemical Technology
- Beijing 100029
- P. R. China
| | - Xuefei Xu
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education
- Tsinghua University
- Beijing 100084
- China
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239
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Goerigk L, Mehta N. A Trip to the Density Functional Theory Zoo: Warnings and Recommendations for the User. Aust J Chem 2019. [DOI: 10.1071/ch19023] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
This account is written for general users of density functional theory (DFT) methods as well as experimental researchers who are new to the field and would like to conduct such calculations. Its main emphasis lies on how to find a way through the confusing ‘zoo’ of DFT by addressing common misconceptions and highlighting those modern methods that should ideally be used in calculations of energetic properties and geometries. A particular focus is on highly popular methods and the important fact that popularity does not imply accuracy. In this context, we present a new analysis of the openly available data published in Swart and co-workers’ famous annual ‘DFT poll’ (http://www.marcelswart.eu/dft-poll/) to demonstrate the existing communication gap between the DFT user and developer communities. We show that despite considerable methodological advances in the field, the perception of some parts of the user community regarding their favourite approaches has changed little. It is hoped that this account makes a contribution towards changing this status and that users are inspired to adjust their current computational protocols to accommodate strategies that are based on proven robustness, accuracy, and efficiency rather than popularity.
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240
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Morgante P, Peverati R. ACCDB: A collection of chemistry databases for broad computational purposes. J Comput Chem 2018; 40:839-848. [DOI: 10.1002/jcc.25761] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2018] [Revised: 10/09/2018] [Accepted: 11/11/2018] [Indexed: 01/04/2023]
Affiliation(s)
- Pierpaolo Morgante
- Chemistry Program; Florida Institute of Technology, 150 W. University Blvd.; Melbourne Florida, 32901
| | - Roberto Peverati
- Chemistry Program; Florida Institute of Technology, 150 W. University Blvd.; Melbourne Florida, 32901
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241
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Dandu NK, Adeyiga O, Panthi D, Bird SA, Odoh SO. Performance of density functional theory for describing hetero-metallic active-site motifs for methane-to-methanol conversion in metal-exchanged zeolites. J Comput Chem 2018; 39:2667-2678. [PMID: 30379335 DOI: 10.1002/jcc.25714] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Revised: 07/30/2018] [Accepted: 09/23/2018] [Indexed: 01/19/2023]
Abstract
Methane-to-methanol conversion (MMC) can be facilitated with high methanol selectivities by copper-exchanged zeolites. There are however two open questions regarding the use of these zeolites to facilitate the MMC process. The first concerns the possibility of operating the three cycles in the stepwise MMC process by these zeolites in an isothermal fashion. The second concerns the possibility of improving the methanol yields by systematic substitution of some copper centers in these active sites with other earth-abundant transition metals. Quantum-mechanical computations can be used to compare methane activation by copper oxide species and analogous mixed-metal systems. To carry out such screening, it is important that we use theoretical methods that are accurate and computationally affordable for describing the properties of the hetero-metallic catalytic species. We have examined the performance of 47 exchange-correlation density functionals for predicting the relative spin-state energies and chemical reactivities of six hetero-metallic [M-O-Cu]2+ and [M-O2 -Cu]2+ , (where MCo, Fe, and Ni), species by comparison with coupled cluster theory including iterative single, double excitations as well as perturbative treatment of triple excitations, CCSD(T). We also performed multireference calculations on some of these systems. We considered two types of reactions (hydrogen addition and oxygen addition) that are relevant to MMC. We recommend the use of τ-HCTH and OLYP to determine the spin-state energy splittings in the hetero-metallic motifs. ωB97, ωB97X, ωB97X-D3, and MN15 performed best for predicting the energies of the hydrogen and oxygen addition reactions. In contrast, local, and semilocal functionals do poorly for chemical reactivity. Using [Fe-O-Cu]2+ as a test, we see that the nonlocal functionals perform well for the methane CH activation barrier. In contrast, the semilocal functionals perform rather poorly. © 2018 Wiley Periodicals, Inc.
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Affiliation(s)
- Naveen K Dandu
- Department of Chemistry, University of Nevada Reno, 1664 N. Virginia Street, Reno, Nevada, 89557-0216
| | - Olajumoke Adeyiga
- Department of Chemistry, University of Nevada Reno, 1664 N. Virginia Street, Reno, Nevada, 89557-0216
| | - Dipak Panthi
- Department of Chemistry, University of Nevada Reno, 1664 N. Virginia Street, Reno, Nevada, 89557-0216
| | - Shaina A Bird
- Department of Chemistry, University of Nevada Reno, 1664 N. Virginia Street, Reno, Nevada, 89557-0216
| | - Samuel O Odoh
- Department of Chemistry, University of Nevada Reno, 1664 N. Virginia Street, Reno, Nevada, 89557-0216
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242
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Long B, Bao JL, Truhlar DG. Kinetics of the Strongly Correlated CH3O + O2 Reaction: The Importance of Quadruple Excitations in Atmospheric and Combustion Chemistry. J Am Chem Soc 2018; 141:611-617. [DOI: 10.1021/jacs.8b11766] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bo Long
- College of Materials Science and Engineering, Guizhou Minzu University, Guiyang, 550025, China
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Junwei Lucas Bao
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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243
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Kruse H, Banáš P, Šponer J. Investigations of Stacked DNA Base-Pair Steps: Highly Accurate Stacking Interaction Energies, Energy Decomposition, and Many-Body Stacking Effects. J Chem Theory Comput 2018; 15:95-115. [DOI: 10.1021/acs.jctc.8b00643] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Holger Kruse
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic
| | - Pavel Banáš
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacky University, 17 Listopadu 12, 77146 Olomouc, Czech Republic
| | - Jiřı́ Šponer
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacky University, 17 Listopadu 12, 77146 Olomouc, Czech Republic
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244
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Sevy A, Tieu E, Morse MD. Bond dissociation energies of FeSi, RuSi, OsSi, CoSi, RhSi, IrSi, NiSi, and PtSi. J Chem Phys 2018; 149:174307. [PMID: 30409013 DOI: 10.1063/1.5050934] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Resonant two-photon ionization spectroscopy has been used to investigate the spectra of the diatomic late transition metal silicides, MSi, M = Fe, Ru, Os, Co, Rh, Ir, Ni, and Pt, in the vicinity of the bond dissociation energy. In these molecules, the density of vibronic states is so large that the spectra appear quasicontinuous in this energy range. When the excitation energy exceeds the ground separated atom limit, however, a new decay process becomes available-molecular dissociation. This occurs so rapidly that the molecule falls apart before it can absorb another photon and be ionized. The result is a sharp drop to the baseline in the ion signal, which we identify as occurring at the thermochemical 0 K bond dissociation energy, D0. On this basis, the measured predissociation thresholds provide D0 = 2.402(3), 4.132(3), 4.516(3), 2.862(3), 4.169(3), 4.952(3), 3.324(3), and 5.325(9) eV for FeSi, RuSi, OsSi, CoSi, RhSi, IrSi, NiSi, and PtSi, respectively. Using thermochemical cycles, the enthalpies of formation of the gaseous MSi molecules are derived as 627(8), 700(10), 799(10), 595(8), 599(8), 636(10), 553(12), and 497(8) kJ/mol for FeSi, RuSi, OsSi, CoSi, RhSi, IrSi, NiSi, and PtSi, respectively. Likewise, combining these results with other data provides the ionization energies of CoSi and NiSi as 7.49(7) and 7.62(7) eV, respectively. Chemical bonding trends among the diatomic transition metal silicides are discussed.
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Affiliation(s)
- Andrew Sevy
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, USA
| | - Erick Tieu
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, USA
| | - Michael D Morse
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, USA
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245
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Jeffries B, Wang Z, Graton J, Holland SD, Brind T, Greenwood RDR, Le Questel JY, Scott JS, Chiarparin E, Linclau B. Reducing the Lipophilicity of Perfluoroalkyl Groups by CF2–F/CF2–Me or CF3/CH3 Exchange. J Med Chem 2018; 61:10602-10618. [DOI: 10.1021/acs.jmedchem.8b01222] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Benjamin Jeffries
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, U.K
| | - Zhong Wang
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, U.K
| | - Jérôme Graton
- CEISAM UMR CNRS 6230, Faculté des Sciences et des Techniques, Université de Nantes 2, rue de la Houssinière—BP 92208, 44322 Nantes Cedex 3, France
| | - Simon D. Holland
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, U.K
| | - Thomasin Brind
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, U.K
| | - Ryan D. R. Greenwood
- Medicinal Chemistry, Oncology, IMED Biotech Unit, AstraZeneca, Cambridge CB4 0WG, U.K
| | - Jean-Yves Le Questel
- CEISAM UMR CNRS 6230, Faculté des Sciences et des Techniques, Université de Nantes 2, rue de la Houssinière—BP 92208, 44322 Nantes Cedex 3, France
| | - James S. Scott
- Medicinal Chemistry, Oncology, IMED Biotech Unit, AstraZeneca, Cambridge CB4 0WG, U.K
| | - Elisabetta Chiarparin
- Medicinal Chemistry, Oncology, IMED Biotech Unit, AstraZeneca, Cambridge CB4 0WG, U.K
| | - Bruno Linclau
- School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, U.K
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246
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Witte J, Neaton JB, Head-Gordon M. Push it to the limit: comparing periodic and local approaches to density functional theory for intermolecular interactions. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1542164] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Jonathon Witte
- Department of Chemistry, University of California, Berkeley, California, United States
- Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, California, United States
| | - Jeffrey B. Neaton
- Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, California, United States
- Department of Physics, University of California, Berkeley, California, United States
- Kavli Energy Nanosciences Institute at Berkeley, Berkeley, California, United States
| | - Martin Head-Gordon
- Department of Chemistry, University of California, Berkeley, California, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States
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247
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Hait D, Head-Gordon M. Delocalization Errors in Density Functional Theory Are Essentially Quadratic in Fractional Occupation Number. J Phys Chem Lett 2018; 9:6280-6288. [PMID: 30339010 DOI: 10.1021/acs.jpclett.8b02417] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Approximate functionals used in practical density functional theory (DFT) deviate from the piecewise linear behavior of the exact functional for fractional charges. This deviation causes excess charge delocalization, which leads to incorrect densities, molecular properties, barrier heights, band gaps, and excitation energies. We present a simple delocalization function for characterizing this error and find it to be almost perfectly linear vs the fractional electron number for systems spanning in size from the H atom to the C12H14 polyene. This causes the delocalization energy error to be a quadratic polynomial in the fractional electron number, which permits us to assess the comparative performance of 47 popular and recent functionals through the curvature. The quadratic form further suggests that information about a single fractional charge is sufficient to eliminate the principal source of delocalization error. Generalizing traditional two-point information like ionization potentials or electron affinities to account for a third, fractional charge-based data point could therefore permit fitting/tuning of functionals with lower delocalization error.
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Affiliation(s)
- Diptarka Hait
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry , University of California , Berkeley , California 94720 , United States
| | - Martin Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry , University of California , Berkeley , California 94720 , United States
- Chemical Sciences Division , Lawrence Berkeley National Laboratory , Berkeley , California 94720 , United States
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248
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Jana S, Sharma K, Samal P. Assessing the performance of the recent meta-GGA density functionals for describing the lattice constants, bulk moduli, and cohesive energies of alkali, alkaline-earth, and transition metals. J Chem Phys 2018; 149:164703. [DOI: 10.1063/1.5047863] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Subrata Jana
- School of Physical Sciences, National Institute of Science Education and Research, HBNI, Bhubaneswar 752050, India
| | - Kedar Sharma
- School of Physics, Indian Institute of Science Education and Research, Maruthamala, Vithura, Thiruvananthapuram 695551, India
| | - Prasanjit Samal
- School of Physical Sciences, National Institute of Science Education and Research, HBNI, Bhubaneswar 752050, India
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249
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Affiliation(s)
- Bo Yang
- Department of Chemistry, Inorganometallic Catalyst Design Center, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Donald G. Truhlar
- Department of Chemistry, Inorganometallic Catalyst Design Center, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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250
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Schattenberg CJ, Maier TM, Kaupp M. Lessons from the Spin-Polarization/Spin-Contamination Dilemma of Transition-Metal Hyperfine Couplings for the Construction of Exchange-Correlation Functionals. J Chem Theory Comput 2018; 14:5653-5672. [DOI: 10.1021/acs.jctc.8b00597] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Caspar J. Schattenberg
- Institut für Chemie, Technische Universität Berlin, Theoretische Chemie/Quantenchemie, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
| | - Toni M. Maier
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
| | - Martin Kaupp
- Institut für Chemie, Technische Universität Berlin, Theoretische Chemie/Quantenchemie, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
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