Development of a low-temperature photoelectron spectroscopy instrument using an electrospray ion source and a cryogenically controlled ion trap

Structures of biomolecular ions in the gas phase probed by infrared light sources

Infrared (IR) spectroscopy of biomolecular ions combines mass spectrometry's high sensitivity and ability to analyze complex mixtures with the enhanced structural information available from vibrational spectroscopy. IR spectroscopy is in principle well placed to distinguish isomers and allow chemical classification of unknown molecules. This review gives an outline of current instrumentation, spectroscopic approaches, and potential bottlenecks. We discuss the most promising applications in bioanalytical mass spectrometry in view of recent experimental results, as well as future applications based on bioinformatics.

Negative Ion Photoelectron Spectroscopy Reveals Thermodynamic Advantage of Organic Acids in Facilitating Formation of Bisulfate Ion Clusters: Atmospheric Implications

Recent lab and field measurements have indicated critical roles of organic acids in enhancing new atmospheric aerosol formation. Such findings have stimulated theoretical studies with the aim of understanding the interaction of organic acids with common aerosol nucleation precursors like bisulfate (HSO4(-)). We report a combined negative ion photoelectron spectroscopic and theoretical investigation of molecular clusters formed by HSO4(-) with succinic acid (SUA, HO2C(CH2)2CO2H), HSO4(-)(SUA)n (n = 0-2), along with HSO4(-)(H2O)n and HSO4(-)(H2SO4)n. It is found that one SUA molecule can stabilize HSO4(-) by ca. 39 kcal/mol, three times the corresponding value that one water molecule is capable of (ca. 13 kcal/mol). Molecular dynamics simulations and quantum chemical calculations reveal the most plausible structures of these clusters and attribute the stability of these clusters to the formation of strong hydrogen bonds. This work provides direct experimental evidence showing significant thermodynamic advantage by involving organic acid molecules to promote formation and growth in bisulfate clusters and aerosols.

Three hydrogen bond donor catalysts: oxyanion hole mimics and transition state analogues

Enzymes and their mimics use hydrogen bonds to catalyze chemical transformations. Small-molecule transition state analogues of oxyanion holes have been characterized by computations, gas-phase IR and photoelectron spectroscopy, and determination of their binding constants in acetonitrile. A new class of hydrogen bond catalysts is proposed (donors that can contribute three hydrogen bonds to a single functional group) and demonstrated in a Friedel-Crafts reaction. The employed catalyst was observed to react 100 times faster than its rotamer that can employ only two hydrogen bonds. The former compound also binds anions more tightly and was found to have a thermodynamic advantage.

Probing the Low-Lying Electronic States of Cyclobutanetetraone (C4O4) and Its Radical Anion: A Low-Temperature Anion Photoelectron Spectroscopic Approach

Despite a seemingly simple appearance, cyclobutanetetraone (C4O4) has four low-lying electronic states. Determining the energetic ordering of these states and the ground state of C4O4(-) theoretically has been proven to be considerably challenging and remains largely unresolved to date. Here, we report a low-temperature negative ion photoelectron spectroscopic approach. Well-resolved spectra were obtained at both 193 and 266 nm. Combined with recent theoretical studies and our own Franck-Condon factors simulations, the ground state of C4O4(-) and the ground and two low-lying excited states of C4O4 are determined to be (2)A2u, (3)B2u, (1)A1g (8π), and (1)B2u, respectively. The frequency of the ring breathing mode (1810 ± 20 cm(-1)), the electron affinity (3.475 ± 0.005 eV), and the term values of (1)A1g (8π) (6.27 ± 0.5 kJ/mol) and (1)B2u (13.50 ± 0.5 kJ/mol) are also directly obtained from the experiments.

Probing the electronic structure and chemical bonding of the "staple" motifs of thiolate gold nanoparticles: Au(SCH3)2- and Au2(SCH3)3-

Thiolate-protected gold nanoparticles have been found recently to be coordinated by the so-called "staple" bonding motifs, consisting of quasi-linear [RS-Au-SR] and V-shaped [RS-Au-(SR)-Au-SR] units, which carry a negative charge formally. Using photoelectron spectroscopy (PES) in conjunction with ab initio calculations, we have investigated the electronic structure and chemical bonding of the simplest staples with R = CH(3): Au(SCH(3))(2)(-) and Au(2)(SCH(3))(3)(-), which were produced by electrospray ionization. PES data of the two Au-thiolate complexes are obtained both at room temperature (RT) and 20 K. The temperature-dependent study reveals significant spectral broadening at RT, in agreement with theoretical predictions of multiple conformations due to the different orientations of the -SCH(3) groups. The Au-S bonds in Au(n)(SCH(3))(n+1)(-) (n = 1, 2) are shown to be covalent via a variety of chemical bonding analyses. The strong Au-thiolate bonding and the stability of the Au-thiolate complexes are consistent with their ubiquity as staples for gold nanoparticles and on gold surfaces.

Photoelectron-photofragment coincidence spectroscopy in a cryogenically cooled linear electrostatic ion beam trap

A cryogenically cooled linear electrostatic ion beam trap for use in photoelectron-photofragment coincidence (PPC) spectroscopy is described. Using this instrument, anions created in cold, low-duty-cycle sources can be stored for many seconds in a ~20 K environment to cool radiatively, removing energetic uncertainties due to vibrationally excited precursor anions. This apparatus maintains a well-collimated beam necessary for high-resolution fragment imaging and the high experimental duty cycle needed for coincidence experiments. Ion oscillation is bunched and phase-locked to a modelocked laser, ensuring temporal overlap between ion bunches and laser pulses and that ions are intersected by the laser only when travelling in one direction. An electron detector is housed in the field-free center of the trap, allowing PPC experiments to be carried out on ions while they are stored and permitting efficient detection of 3-dimensional electron and neutral recoil trajectories. The effects of trapping parameters on the center-of-mass trajectories in the laser-ion interaction region are explored to optimize neutral particle resolution, and the impact of bunching on ion oscillation is established. Finally, an initial demonstration of radiative cooling is presented.

Vibrational characterization of simple peptides using cryogenic infrared photodissociation of H2-tagged, mass-selected ions

We present infrared photodissociation spectra of two protonated peptides that are cooled in a ~10 K quadrupole ion trap and "tagged" with weakly bound H(2) molecules. Spectra are recorded over the range of 600-4300 cm(-1) using a table-top laser source, and are shown to result from one-photon absorption events. This arrangement is demonstrated to recover sharp (Δν ~6 cm(-1)) transitions throughout the fingerprint region, despite the very high density of vibrational states in this energy range. The fundamentals associated with all of the signature N-H and C=O stretching bands are completely resolved. To address the site-specificity of the C=O stretches near 1800 cm(-1), we incorporated one (13)C into the tripeptide. The labeling affects only one line in the complex spectrum, indicating that each C=O oscillator contributes a single distinct band, effectively "reporting" its local chemical environment. For both peptides, analysis of the resulting band patterns indicates that only one isomeric form is generated upon cooling the ions initially at room temperature into the H(2) tagging regime.

Development of a new photoelectron spectroscopy instrument combining an electrospray ion source and photoelectron imaging

A new apparatus has been constructed that combines electrospray ionization with a quadrupole mass filter, hexapole ion trap, and velocity-map imaging. The purpose is to record photoelectron images of isolated chromophore anions. To demonstrate the capability of our instrument we have recorded the photodetachment spectra of isolated deprotonated phenol and indole anions. To our knowledge, this is the first time that the photodetachment energy of the deprotonated indole anion has been recorded.