201
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Hologne M, Raya J, Hirschinger J. 13C/15N distance determination by CPMAS NMR in uniformly 13C labeled molecules. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2006; 44:174-7. [PMID: 16358305 DOI: 10.1002/mrc.1744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The REDOR and CPMAS techniques are applied for measuring 13C-15N dipolar coupling constants in glycine. It is shown that the selective CP or SPECIFIC CP technique removes the coherent evolution of the spin system under homonuclear 13C-13C J couplings. While the large coupling constant (approximately 900 Hz) is readily determined because of the presence of large oscillations in the CPMAS dynamics, their absence precludes the measurement of the small coupling constant (approximately 200 Hz). The experimental results and numerical simulations demonstrate that the determination of 13C-15N coupling constants of medium size (<1 kHz) by the CPMAS technique is mainly limited by the strength of the 1H decoupling field and the size of the 13C and 15N chemical shift anisotropies.
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Affiliation(s)
- Maggy Hologne
- Institut de Chimie, FRE 2446 CNRS, Université Louis Pasteur, BP 296, 67008 Strasbourg Cedex, France
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202
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Veshtort M, Griffin RG. SPINEVOLUTION: a powerful tool for the simulation of solid and liquid state NMR experiments. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2006; 178:248-82. [PMID: 16338152 DOI: 10.1016/j.jmr.2005.07.018] [Citation(s) in RCA: 368] [Impact Index Per Article: 20.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2005] [Revised: 07/22/2005] [Accepted: 07/23/2005] [Indexed: 05/05/2023]
Abstract
Exact numerical simulations of NMR experiments are often required for the development of new techniques and for the extraction of structural and dynamic information from the spectra. Simulations of solid-state magic angle spinning (MAS) experiments can be particularly demanding both computationally and in terms of the programming required to carry them out, even if special simulation software is used. We recently developed a number of approaches that dramatically improve the efficiency and allow a high degree of automation of these computations. In the present paper, we describe SPINEVOLUTION, a highly optimized computer program that implements the new methodology. The algorithms used in the program will be described separately. Although particularly efficient for the simulation of experiments with complex pulse sequences and multi-spin systems in solids, SPINEVOLUTION is a versatile and easy to use tool for the simulation and optimization of virtually any NMR experiment. The performance of SPINEVOLUTION was compared with that of another recently developed NMR simulation package, SIMPSON. Benchmarked on a series of examples, SPINEVOLUTION was consistently found to be orders of magnitude faster. At the time of publication, the program is available gratis for non-commercial use.
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Affiliation(s)
- Mikhail Veshtort
- Department of Chemistry, MIT/Harvard Center for Magnetic Resonance, Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
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203
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Christiansen SC, Hedin N, Epping JD, Janicke MT, del Amo Y, Demarest M, Brzezinski M, Chmelka BF. Sensitivity considerations in polarization transfer and filtering using dipole-dipole couplings: implications for biomineral systems. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2006; 29:170-82. [PMID: 16343862 DOI: 10.1016/j.ssnmr.2005.10.010] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2005] [Revised: 10/19/2005] [Indexed: 05/05/2023]
Abstract
The robustness and sensitivities of different polarization-transfer methods that exploit heteronuclear dipole-dipole couplings are compared for a series of heterogeneous solid systems, including polycrystalline tetrakis(trimethylsilyl)silane (TKS), adamantane, a physical mixture of doubly (13)C,(15)N-enriched and singly (13)C-enriched polycrystalline glycine, and a powder sample of siliceous marine diatoms, Thalossiosira pseudonana. The methods were analyzed according to their respective frequency-matching spectra or resultant signal intensities. For a series of (13)C{(1)H} cross-polarization experiments, adiabatic passage Hartmann-Hahn cross-polarization (APHH-CP) was shown to have several advantages over other methods, including Hartmann-Hahn cross-polarization (HHCP), variable-amplitude cross-polarization (VACP), and ramped-amplitude cross-polarization (RACP). For X-Y systems, such as (13)C{(15)N}, high and comparable sensitivities were obtained by using APHH-CP with Lee-Goldburg decoupling or by using the transferred-echo double resonance (TEDOR) experiment. The findings were applied to multinuclear (1)H, (13)C, (15)N, and (29)Si CP MAS characterization of a powder diatom sample, a challenging inorganic-organic hybrid solid that places high demands on NMR signal sensitivity.
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Affiliation(s)
- Sean C Christiansen
- Department of Chemical Engineering, University of California, Santa Barbara, CA 93106, USA
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204
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Kehlet C, Vosegaard T, Khaneja N, Glaser SJ, Nielsen NC. Low-power homonuclear dipolar recoupling in solid-state NMR developed using optimal control theory. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2005.08.061] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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205
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Dvinskikh SV, Castro V, Sandström D. Probing segmental order in lipid bilayers at variable hydration levels by amplitude- and phase-modulated cross-polarization NMR. Phys Chem Chem Phys 2005; 7:3255-7. [PMID: 16240038 DOI: 10.1039/b508190d] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The conformational response of dimyristoylphosphatidylcholine bilayers in the liquid crystalline phase to hydration is investigated by a novel magic-angle spinning cross-polarization NMR technique.
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Affiliation(s)
- Sergey V Dvinskikh
- Division of Physical Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91, Stockholm, Sweden.
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206
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Ernst M, Samoson A, Meier BH. Decoupling and recoupling using continuous-wave irradiation in magic-angle-spinning solid-state NMR: A unified description using bimodal Floquet theory. J Chem Phys 2005; 123:64102. [PMID: 16122295 DOI: 10.1063/1.1944291] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The application of two or more different time-dependent coherent perturbations with, in general, incommensurable frequencies occurs quite commonly in NMR experiments. Here we develop a unified description of the entire class of experiments using bimodal Floquet theory and van Vleck-Primas perturbation theory. This treatment leads to a time-independent effective Hamiltonian in Hilbert space and can be looked at as a generalization of average Hamiltonian theory to several incommensurate time dependencies. As a prototype experiment we treat the application of continuous-wave (cw) radio-frequency irradiation in combination with magic-angle sample spinning. Practically relevant examples of this type of experiments are heteronuclear spin decoupling and recoupling experiments using cw irradiation, e.g., rotary-resonance recoupling. Perturbations up to the third order must be taken into account to explain all experimentally observed resonance conditions.
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Affiliation(s)
- Matthias Ernst
- Physical Chemistry, Eidgenössische Technische Hochschule (ETH) Zurich, CH-8093 Zürich, Switzerland.
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207
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Edén M, Annersten H, Zazzi Å. Pulse-assisted homonuclear dipolar recoupling of half-integer quadrupolar spins in magic-angle spinning NMR. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2005.04.030] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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208
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Hologne M, Bertani P, Azaïs T, Bonhomme C, Hirschinger J. 1H/31P distance determination by solid state NMR in multiple-spin systems. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2005; 28:50-6. [PMID: 15899581 DOI: 10.1016/j.ssnmr.2005.04.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2005] [Revised: 04/19/2005] [Accepted: 04/20/2005] [Indexed: 05/02/2023]
Abstract
The results of two techniques of dipolar recoupling, REDOR and CPMAS, are compared in the case of a coupled multiple-spin system. A fundamentally different behavior is observed for these two techniques. In REDOR, the terms associated with each interaction S-I(k) commute with each other and no truncation takes place so that each addition of spin I(k) causes a splitting with its dipolar frequency. In CPMAS, the flip-flop terms of the dipolar Hamiltonian do not commute with the dominant term from the strongly coupled spin pair so that the weak coupling terms from the neighboring spin I(k) are effectively truncated by the dominant pair interaction. Spin dynamics calculations are in agreement with the experimental data in a cubane shaped cluster.
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Affiliation(s)
- Maggy Hologne
- Institut de Chimie, FRE 2446 CNRS, Université Louis Pasteur, BP 296, 67008 Strasbourg Cedex, France
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209
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Ramachandran R, Bajaj VS, Griffin RG. Theory of heteronuclear decoupling in solid-state nuclear magnetic resonance using multipole-multimode Floquet theory. J Chem Phys 2005; 122:164503. [PMID: 15945689 DOI: 10.1063/1.1875112] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
A formal theory for heteronuclear decoupling in solid-state magic angle spinning (MAS) nuclear magnetic resonance experiments is presented as a first application of multipole-multimode Floquet theory. The method permits a straightforward construction of the multispin basis and describes the spin dynamics via effective Floquet Hamiltonians obtained using the van Vleck transformation method in the Floquet-Liouville space. As a test case, we consider a model three-spin system (I2S) under asynchronous time modulations (both MAS and rf irradiation) and derive effective Hamiltonians for describing the spin dynamics in the Floquet-Liouville space during heteronuclear decoupling. Furthermore, we describe and evaluate the origin of cross terms between the various anisotropic interactions and illustrate their exact contributions to the spin dynamics. The theory presented herein should be applicable to the design and understanding of pulse sequences for heteronuclear and homonuclear recoupling and decoupling.
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Affiliation(s)
- Ramesh Ramachandran
- Francis Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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210
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Edén M, Brinkmann A. Triple-quantum dynamics in multiple-spin systems undergoing magic-angle spinning: application to 13C homonuclear correlation spectroscopy. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2005; 173:259-279. [PMID: 15780918 DOI: 10.1016/j.jmr.2004.12.008] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2004] [Revised: 12/15/2004] [Indexed: 05/24/2023]
Abstract
We analyze the multiple-quantum dynamics governed by a new homonuclear recoupling strategy effecting an average dipolar Hamiltonian comprising three-spin triple-quantum operators (e.g., S(p)+S(q)+S(r)+) under magic-angle spinning conditions. Analytical expressions are presented for polarization transfer processes in systems of three and four coupled spins-1/2 subject to triple-quantum filtration (3QF), and high-order multiple-quantum excitation is investigated numerically in moderately large clusters, comprising up to seven spins. This recoupling approach gives highly efficient excitation of triple-quantum coherences: ideally, up to 67% of the initial polarization may be recovered by 3QF in three-spin systems in polycrystalline powders. Two homonuclear 2D correlation strategies are demonstrated experimentally on powders of uniformly 13C-labeled alanine and tyrosine: the first correlates the single-quantum spectrum in the first dimension with the corresponding 3QF spectrum along the other. The second protocol correlates triple-quantum coherences with their corresponding single-quantum coherences within triplets of coupled spins.
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Affiliation(s)
- Mattias Edén
- Physical Chemistry Division, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden.
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211
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Heise H, Seidel K, Etzkorn M, Becker S, Baldus M. 3D NMR spectroscopy for resonance assignment and structure elucidation of proteins under MAS: novel pulse schemes and sensitivity considerations. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2005; 173:64-74. [PMID: 15705514 DOI: 10.1016/j.jmr.2004.11.020] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2004] [Revised: 11/15/2004] [Indexed: 05/24/2023]
Abstract
Two types of 3D MAS NMR experiments are introduced, which combine standard (NC,CC) transfer schemes with (1H,1H) mixing to simultaneously detect connectivities and structural constraints of uniformly 15N,13C-labeled proteins with high spectral resolution. The homonuclear CCHHC and CCC experiments are recorded with one double-quantum evolution dimension in order to avoid a cubic diagonal in the spectrum. Depending on the second transfer step, spin systems or proton-proton contacts can be determined with reduced spectral overlap. The heteronuclear NHHCC experiment encodes NH-HC proton-proton interactions, which are indicative for the backbone conformation of the protein. The third dimension facilitates the identification of the amino acid spin system. Experimental results on U-[15N,13C]valine and U-[15N,13C]ubiquitin demonstrate their usefulness for resonance assignments and for the determination of structural constraints. Furthermore, we give a detailed analysis of alternative multidimensional sampling schemes and their effect on sensitivity and resolution.
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Affiliation(s)
- Henrike Heise
- Department for NMR-based Structural Biology, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg 11, D-37077 Göttingen, Germany.
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212
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Dvinskikh SV, Zimmermann H, Maliniak A, Sandström D. Heteronuclear dipolar recoupling in solid-state nuclear magnetic resonance by amplitude-, phase-, and frequency-modulated Lee–Goldburg cross-polarization. J Chem Phys 2005; 122:44512. [PMID: 15740272 DOI: 10.1063/1.1834569] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
This paper presents a theoretical, numerical, and experimental study of phase- and frequency-switched Lee-Goldburg cross-polarization (FSLG-CP) under magic-angle spinning conditions. It is shown that a well-defined amplitude modulation of one of the two radio-frequency (rf) fields in the FSLG-CP sequence results in highly efficient heteronuclear dipolar recoupling. The recoupled dipolar interaction is gamma-encoded and, under ideal conditions, the effective spin Hamiltonian is equivalent to that in continuous-wave Lee-Goldburg CP. In practice, however, FSLG-CP is less susceptible to rf field mismatch and inhomogeneity, and provides better suppression of (1)H spin diffusion. The performance of FSLG-CP is experimentally demonstrated on liquid-crystalline samples exhibiting motionally averaged dipolar couplings.
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Affiliation(s)
- Sergey V Dvinskikh
- Division of Physical Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden.
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213
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Chevelkov V, Chen Z, Bermel W, Reif B. Resolution enhancement in MAS solid-state NMR by application of 13C homonuclear scalar decoupling during acquisition. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2005; 172:56-62. [PMID: 15589408 DOI: 10.1016/j.jmr.2004.09.017] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2004] [Revised: 09/20/2004] [Indexed: 05/24/2023]
Abstract
Spectral resolution imposes a major problem on the evaluation of MAS solid-state NMR experiments as larger biomolecular systems are concerned. We show in this communication that decoupling of the (13)C-(13)C homonuclear scalar couplings during stroboscopic detection can be successfully applied to increase the spectral resolution up to a factor of 2-2.5 and sensitivity up to a factor of 1.2. We expect that this approach will be useful for the study of large biomolecular systems like membrane proteins and amyloidogenic peptides and proteins where spectral overlap is critical. The experiments are demonstrated on a uniformly (13)C,(15)N-labelled sample of Nac-Val-Leu-OH and applied to a uniformly (13)C,(15)N-enriched sample of a hexameric amyloidogenic peptide.
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Affiliation(s)
- Veniamin Chevelkov
- Forschungsinstitut für Molekulare Pharmakologie, Robert-Roessle-Str. 10, 13125 Berlin, Germany
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214
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Abstract
The fact that membrane proteins are notoriously difficult to analyse using standard protocols for atomic-resolution structure determination methods have motivated adaptation of these techniques to membrane protein studies as well as development of new technologies. With this motivation, liquid-state nuclear magnetic resonance (NMR) has recently been used with success for studies of peptides and membrane proteins in detergent micelles, and solid-state NMR has undergone a tremendous evolution towards characterization of membrane proteins in native membrane and oriented phospholipid bilayers. In this mini-review, we describe some of the technological challenges behind these efforts and provide examples on their use in membrane biology.
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Affiliation(s)
- Nielschr Nielsen
- Department of Chemistry, University of Aarhus, Aarhus C, Denmark.
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215
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Mali G, Kaucic V. Enhancing sensitivity or resolution of homonuclear correlation experiment for half-integer quadrupolar nuclei. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2004; 171:48-56. [PMID: 15504681 DOI: 10.1016/j.jmr.2004.08.003] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2004] [Indexed: 05/24/2023]
Abstract
We have recently introduced double-quantum homonuclear correlation NMR experiment for half-integer quadrupolar nuclei in solids, which was based on rotary resonance recoupling [J. Chem. Phys. 120 (2004) 2835]. In this contribution we show on two 23Na (I=3/2) containing samples, Na2SO4 and Na2HPO4, that the efficiency of the experiment can be substantially enhanced by adding rotor assisted population transfer (RAPT) and Carr-Purcell-Meiboom-Gill (CPMG) sequences to it. We also present an upgraded two-dimensional experiment, in which double- and six-quantum coherences are correlated during t1 evolution period, yielding a high-resolution isotropic spectrum along an indirectly detected dimension. The sensitivity of the upgraded experiment is, however, greatly reduced compared to the sensitivity of the original experiment, so that its application is feasible only when RAPT and CPMG can be used as well.
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Affiliation(s)
- Gregor Mali
- National Institute of Chemistry, Hajdrihova 19, SI-1001 Ljubljana, Slovenia.
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216
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Straus SK. Recent developments in solid-state magic-angle spinning, nuclear magnetic resonance of fully and significantly isotopically labelled peptides and proteins. Philos Trans R Soc Lond B Biol Sci 2004; 359:997-1008. [PMID: 15306412 PMCID: PMC1693383 DOI: 10.1098/rstb.2003.1398] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
In recent years, a large number of solid-state nuclear magnetic resonance (NMR) techniques have been developed and applied to the study of fully or significantly isotopically labelled ((13)C, (15)N or (13)C/(15)N) biomolecules. In the past few years, the first structures of (13)C/(15)N-labelled peptides, Gly-Ile and Met-Leu-Phe, and a protein, Src-homology 3 domain, were solved using magic-angle spinning NMR, without recourse to any structural information obtained from other methods. This progress has been made possible by the development of NMR experiments to assign solid-state spectra and experiments to extract distance and orientational information. Another key aspect to the success of solid-state NMR is the advances made in sample preparation. These improvements will be reviewed in this contribution. Future prospects for the application of solid-state NMR to interesting biological questions will also briefly be discussed.
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Affiliation(s)
- Suzana K Straus
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada.
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217
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Zhao X, Hoffbauer W, Schmedt auf der Günne J, Levitt MHMH. Heteronuclear polarization transfer by symmetry-based recoupling sequences in solid-state NMR. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2004; 26:57-64. [PMID: 15276635 DOI: 10.1016/j.ssnmr.2003.11.001] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2003] [Revised: 11/03/2003] [Indexed: 05/24/2023]
Abstract
We demonstrate a new set of methods for transferring spin polarization between different nuclear isotopes in magic-angle-spinning solid-state NMR. The technique employs symmetry-based recoupling sequences on one irradiation channel and a simple sequence of between one and three strong radiofrequency pulses on the second channel. A phase shift of the recoupling sequences is applied at the same time as a pi/2 pulse on the second channel. The trajectory of the transferred polarization may be used to estimate heteronuclear distances. The method is particularly attractive for nuclei with low gyromagnetic ratios or for those experiencing strong anisotropic spin interactions, where conventional Hartmann-Hahn cross-polarization is difficult to apply. We demonstrate the method on 1H-13C, 1H-15N and 19F-109Ag systems.
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Affiliation(s)
- Xin Zhao
- Chemistry Department, Southampton University, Highfield, Southampton SO17 1BJ, UK
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218
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De Paëpe G, Eléna B, Emsley L. Characterization of heteronuclear decoupling through proton spin dynamics in solid-state nuclear magnetic resonance spectroscopy. J Chem Phys 2004; 121:3165-80. [PMID: 15291627 DOI: 10.1063/1.1773155] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The work presented here aims at understanding the performance of phase modulated heteronuclear decoupling sequences such as Cosine Modulation or Two Pulse Phase Modulation. To that end we provide an analytical description of the intrinsic behavior of Cosine Modulation decoupling with respect to radio-frequency-inhomogeneity and the proton-proton dipolar coupling network. We discover through a Modulation Frame average Hamiltonian analysis that best decoupling is obtained under conditions where the heteronuclear interactions are removed but notably where homonuclear couplings are recoupled at a homonuclear Rotary Resonance (HORROR) condition in the Modulation Frame. These conclusions are supported by extensive experimental investigations, and notably through the introduction of proton nutation experiments to characterize spin dynamics in solids under decoupling conditions. The theoretical framework presented in this paper allows the prediction of the optimum parameters for a given set of experimental conditions.
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Affiliation(s)
- Gaël De Paëpe
- Laboratoire de Chimie (UMR-5182 CNRS-ENS), Laboratoire de Recherche Correspondant du CEA (23 V), Ecole Normale Superieure de Lyon, 69364, France
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219
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Kehlet CT, Sivertsen AC, Bjerring M, Reiss TO, Khaneja N, Glaser SJ, Nielsen NC. Improving Solid-State NMR Dipolar Recoupling by Optimal Control. J Am Chem Soc 2004; 126:10202-3. [PMID: 15315406 DOI: 10.1021/ja048786e] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present the first solid-state NMR experiments developed using optimal control theory. Taking heteronuclear dipolar recoupling in magic-angle-spinning NMR as an example, it proves possible to significantly improve the efficiency of the experiments while introducing robustness toward instrumental imperfections such as radio frequency inhomogeneity. The improvements are demonstrated by numerical simulations as well as practical experiments on a 13Calpha,15N-labeled powder of glycine. The experiments demonstrate a gain of 53% in the efficiency for 15N to 13Calpha coherence transfer relative to the typically double-cross-polarization experiments.
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Affiliation(s)
- Cindie T Kehlet
- Interdisciplinary Nanoscience Center (iNANO) and Laboratory for Biomolecular NMR Spectroscopy, Department of Chemistry, University of Aarhus, DK-8000 Aarhus C, Denmark
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220
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Brinkmann A, Edén M. Second order average Hamiltonian theory of symmetry-based pulse schemes in the nuclear magnetic resonance of rotating solids: Application to triple-quantum dipolar recoupling. J Chem Phys 2004; 120:11726-45. [PMID: 15268208 DOI: 10.1063/1.1738102] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The average Hamiltonian theory (AHT) of several classes of symmetry-based radio-frequency pulse sequences is developed to second order, allowing quantitative analyses of a wide range of recoupling and decoupling applications in magic-angle-spinning solid state nuclear magnetic resonance. General closed analytical expressions are presented for a cross term between any two interactions recoupled to second order AHT. We classify them into different categories and show that some properties of the recoupling pulse sequence may be predicted directly from this classification. These results are applied to examine a novel homonuclear recoupling strategy, effecting a second order average dipolar Hamiltonian comprising trilinear triple quantum (3Q) spin operators. We discuss general features and design principles of such 3Q recoupling sequences and demonstrate by numerical simulations and experiments that they provide more efficient excitation of (13)C 3Q coherences compared to previous techniques. We passed up to 15% of the signal through a state of 3Q coherence in rotating powders of uniformly (13)C-labeled alanine and tyrosine. Second order recoupling-based (13)C homonuclear 3Q correlation spectroscopy is introduced and demonstrated on tyrosine.
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Affiliation(s)
- Andreas Brinkmann
- Physical Chemistry/Solid State NMR, NSRIM Center, University of Nijmegen, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands
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221
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Kono H, Numata Y. Two-dimensional spin-exchange solid-state NMR study of the crystal structure of cellulose II. POLYMER 2004. [DOI: 10.1016/j.polymer.2004.04.025] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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222
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Kristiansen PE, Carravetta M, Lai WC, Levitt MH. A robust pulse sequence for the determination of small homonuclear dipolar couplings in magic-angle spinning NMR. Chem Phys Lett 2004. [DOI: 10.1016/j.cplett.2004.03.075] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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223
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19F/29Si distance determination and heteronuclear spin counting under fast magic-angle spinning in fluoride-containing octadecasil. CR CHIM 2004. [DOI: 10.1016/j.crci.2003.09.011] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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224
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Mali G, Fink G, Taulelle F. Double-quantum homonuclear correlation magic angle sample spinning nuclear magnetic resonance spectroscopy of dipolar-coupled quadrupolar nuclei. J Chem Phys 2004; 120:2835-45. [PMID: 15268430 DOI: 10.1063/1.1638741] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A double-quantum homonuclear correlation nuclear magnetic resonance experiment for dipolar-coupled half-integer quadrupolar nuclei in solids is presented. The experiment is based on rotary resonance dipolar recoupling and uses bracketed spin-lock pulses to excite double-quantum coherence and later to convert it to the zero-quantum one. A central-transition-selective pi pulse at the beginning of the t1 evolution period differentiates coherence transfer pathways of double-quantum coherences arising from coupled spins and from a single spin, so that the latter can be efficiently filtered out by phase cycling. The experiment was tested on an aluminophosphate molecular sieve AlPO4-14, a material with a variety of aluminum quadrupolar coupling constants, isotropic chemical shifts and homonuclear distances. In a two-dimensional spectrum aluminum dipolar couplings with internuclear distances between 2.9 and 5.5 A were resolved. Although the experiment requires an application of weak radio-frequency fields, frequency offsets did not affect its performance crucially.
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Affiliation(s)
- Gregor Mali
- National Institute of Chemistry, Hajdrihova 19, SI-1001 Ljubljana, Slovenia.
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225
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Drobny GP, Long JR, Karlsson T, Shaw W, Popham J, Oyler N, Bower P, Stringer J, Gregory D, Mehta M, Stayton PS. Structural studies of biomaterials using double-quantum solid-state NMR spectroscopy. Annu Rev Phys Chem 2003; 54:531-71. [PMID: 12709513 DOI: 10.1146/annurev.physchem.54.011002.103903] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Proteins directly control the nucleation and growth of biominerals, but the details of molecular recognition at the protein-biomineral interface remain poorly understood. The elucidation of recognition mechanisms at this interface may provide design principles for advanced materials development in medical and ceramic composites technologies. Here, we describe both the theory and practice of double-quantum solid-state NMR (ssNMR) structure-determination techniques, as they are used to determine the secondary structures of surface-adsorbed peptides and proteins. In particular, we have used ssNMR dipolar techniques to provide the first high-resolution structural and dynamic characterization of a hydrated biomineralization protein, salivary statherin, adsorbed to its biologically relevant hydroxyapatite (HAP) surface. Here, we also review NMR data on peptides designed to adsorb from aqueous solutions onto highly porous hydrophobic surfaces with specific helical secondary structures. The adsorption or covalent attachment of biological macromolecules onto polymer materials to improve their biocompatibility has been pursued using a variety of approaches, but key to understanding their efficacy is the verification of the structure and dynamics of the immobilized biomolecules using double-quantum ssNMR spectroscopy.
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Affiliation(s)
- G P Drobny
- Department of Chemistry, University of Washington, Seattle, WA 98195, USA.
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226
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Bjerring M, Nielsen NC. Solid-state NMR heteronuclear coherence transfer using phase and amplitude modulated rf irradiation at the Hartmann–Hahn sideband conditions. Chem Phys Lett 2003. [DOI: 10.1016/j.cplett.2003.10.120] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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227
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Ernst M, Detken A, Böckmann A, Meier BH. NMR Spectra of a Microcrystalline Protein at 30 kHz MAS. J Am Chem Soc 2003; 125:15807-10. [PMID: 14677971 DOI: 10.1021/ja0369966] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Proteins are not always available in amounts desirable for solid-state magic-angle spinning (MAS) nuclear-magnetic resonance (NMR) spectroscopy. To maximize the signal-to-noise ratio achievable with small samples, the filling factor must be optimized by using small-diameter MAS rotors. These rotors have the added benefit of allowing higher radio frequency field amplitudes during polarization transfer steps and during decoupling periods as well as allowing higher spinning frequencies. We demonstrate the advantages of relatively fast MAS (30 kHz using a 2.5 mm rotor) compared to MAS at 12 kHz for the 10.4 kDa model protein Crh with 93 residues and show that the signal-to-noise ratio in two-dimensional correlation spectra can be significantly improved by taking advantage of optimized pulse sequences available with rapid MAS.
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Affiliation(s)
- Matthias Ernst
- Physical Chemistry, ETH Zurich, CH-8093 Zürich, Switzerland
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228
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Schmedt auf der Günne J. Distance measurements in spin-1/2 systems by 13C and 31P solid-state NMR in dense dipolar networks. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2003; 165:18-32. [PMID: 14568514 DOI: 10.1016/s1090-7807(03)00242-8] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
In this article solid-state NMR methods for the determination of internuclear dipole-dipole couplings between homonuclear spin-1/2 nuclei are presented. They are suitable for relatively dense dipolar networks which are still dominated by 2-spin interactions. C-/R-symmetry theory is applied to create a double-quantum average Hamiltonian using phase-modulated radio-frequency irradiation and magic-angle sample-rotation. Symmetry derived pulse sequences with improved compensation against chemical shift anisotropies were found assuming a small isotropic chemical shift difference and using numerical calculations of the spin dynamics. Moreover it is shown that a constant time procedure can be used to acquire reliable double-quantum build-up curves even in systems in which damping obscures oscillations in their symmetric build-up curve. This technique is demonstrated on four crystalline model compounds with 31P and 13C spin systems typical for inorganic and biological applications. Comparison to crystal structure data indicates that the distances derived this way from 31P and 13C double-quantum NMR carry only small systematic errors caused for example by anisotropic J-coupling, dipolar contributions from adjacent spins and relaxation.
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229
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Bjerring M, Rasmussen JT, Schultz Krogshave R, Nielsen NC. Heteronuclear coherence transfer in solid-state nuclear magnetic resonance using a γ-encoded transferred echo experiment. J Chem Phys 2003. [DOI: 10.1063/1.1613933] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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230
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Igumenova TI, McDermott AE. Improvement of resolution in solid state NMR spectra with J-decoupling: an analysis of lineshape contributions in uniformly 13C-enriched amino acids and proteins. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2003; 164:270-285. [PMID: 14511595 DOI: 10.1016/s1090-7807(03)00239-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
In magic angle spinning (MAS) NMR spectra of highly and uniformly 13C,15N-enriched amino acids and proteins, homo-nuclear coupling interactions contribute significantly to the 13C linewidths, particularly for moderate applied magnetic field strengths and sample spinning frequencies. In this work, we attempted to dissect, analyze, and control the contributions of J-coupling and residual homo-nuclear dipolar coupling interactions to the linewidths of uniformly 13C,15N-enriched crystalline alanine; these studies were carried out at 9.4 T using a range of spinning frequencies from 5 to 15 kHz. The anisotropic second-order dipolar shifts and the J-splittings are comparable in their contribution to the linewidths, but behave very differently in terms of experimental protocols for line narrowing. In contrast to the J-coupling interactions, the second-order dipolar broadening cannot be refocused using selective pulses on the passively coupled spin. We carried out experiments to remove or refocus the 13C J-coupling interactions (omega1 J-decoupling) using a selective DANTE pulse in the center of the indirect evolution period. Inversion profiles and bandwidths of selective DANTE pulses acting on transverse magnetization, in the regime of moderate spinning frequencies, were characterized computationally and experimentally. A dramatic improvement in the resolution of the 2D spectrum was achieved when this decoupling protocol was employed.
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Affiliation(s)
- Tatyana I Igumenova
- Department of Chemistry, Columbia University, 3000 Broadway MC 3113 New York, NY 10027, USA
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231
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Costa PR, Sun B, Griffin RG. Rotational resonance NMR: separation of dipolar coupling and zero quantum relaxation. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2003; 164:92-103. [PMID: 12932461 DOI: 10.1016/s1090-7807(03)00083-1] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The solid state NMR technique of rotational resonance (R2) has been used extensively to measure distances approaching 5-6 A between 13C nuclei in a variety of compounds including amyloidogenic peptides and membrane proteins. The accuracy of the distance information extracted from the time-dependent spin dynamics at R2 is often limited by the accuracy with which the relevant zero-quantum lineshape parameters are estimated. Here we demonstrate that measurement of spinning frequency dependent magnetization exchange dynamics provides data from which both distance and zero-quantum relaxation parameters can be extracted independently. In addition to providing more accurate distance information, this technique allows examination of the zero-quantum lineshape, which can indicate the presence of correlated relaxation or chemical shift distributions between dipolar-coupled sites. With this approach we have separated the contribution of dipolar couplings and zero quantum relaxation to R2 exchange curves. Thus, we have significantly improved the accuracy of the measurement of the intramolecular, internuclear distances between a pair of 13C's in two model compounds (N-acetyl-D,L-valine and glycylglycine.HCl) that lie in the distance range 4.6-4.7 A.
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Affiliation(s)
- Phillip R Costa
- Francis Bitter Magnet Laboratory, Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 01239-4307, USA
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232
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233
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Ernst M, Samoson A, Meier BH. Low-power XiX decoupling in MAS NMR experiments. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2003; 163:332-9. [PMID: 12914849 DOI: 10.1016/s1090-7807(03)00155-1] [Citation(s) in RCA: 86] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Low-power XiX proton decoupling under fast magic-angle spinning is introduced. The method is applicable if the MAS frequency exceeds the proton-proton interactions. For rigid organic solids this is the case for MAS frequencies above approximately 40 kHz. It is shown that the quality of the decoupling as well as the sensitivity to frequency offsets can be improved compared to low-power continuous-wave decoupling. The decoupling efficiency is somewhat reduced compared to optimized high-power decoupling: in a peptide sample investigated at an MAS frequency of 50 kHz a loss of about 10% in signal intensity for CH3 and CH groups, and of about 40% for CH2 groups was observed. Taking into consideration, that the rf amplitude in the low-power XiX was about 15 times lower than in high-power XiX decoupling, such a reduction in line intensity is sometimes tolerable.
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Affiliation(s)
- Matthias Ernst
- Physical Chemistry, ETH-Zürich, CH-8093 Zürich, Switzerland.
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234
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Bjerring M, Vosegaard T, Malmendal A, Nielsen N. Methodological development of solid-state NMR for characterization of membrane proteins. ACTA ACUST UNITED AC 2003. [DOI: 10.1002/cmr.a.10069] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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235
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Karlsson T, Popham JM, Long JR, Oyler N, Drobny GP. A study of homonuclear dipolar recoupling pulse sequences in solid-state nuclear magnetic resonance. J Am Chem Soc 2003; 125:7394-407. [PMID: 12797814 DOI: 10.1021/ja0294360] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Dipolar recoupling pulse sequences are of great importance in magic angle spinning solid-state NMR. Recoupling sequences are used for excitation of double-quantum coherence, which, in turn, is employed in experiments to estimate internuclear distances and molecular torsion angles. Much effort is spent on the design of recoupling sequences that are able to produce double-quantum coherence with high efficiency in demanding spin systems, i.e., spin systems with small dipole-dipole couplings and large chemical-shift anisotropies (CSAs). The sequence should perform robustly under a variety of experimental conditions. This paper presents experiments and computer calculations that extend the theory of double-quantum coherence preparation from the strong coupling/small CSA limit to the weak coupling limit. The performance of several popular dipole-dipole recoupling sequences-DRAWS, POST-C7, SPC-5, R1, and R2-are compared. It is found that the optimum performance for several of these sequences, in the weak coupling/large CSA limit, varies dramatically, with respect to the sample spinning speed, the magnitude and orientation of the CSAs, and the magnitude of dipole-dipole couplings. It is found that the efficiency of double-quantum coherence preparation by gamma-encoded sequences departs from the predictions of first-order theory. The discussion is supported by density-matrix calculations.
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Affiliation(s)
- T Karlsson
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
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236
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Matsuki Y, Akutsu H, Fujiwara T. Band-selective recoupling of homonuclear double-quantum dipolar interaction with a generalized composite 0 degrees pulse: application to 13C aliphatic region-selective magnetization transfer in solids. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2003; 162:54-66. [PMID: 12762983 DOI: 10.1016/s1090-7807(02)00191-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Recoupling of homonuclear double quantum (DQ)-dipolar interactions is a useful technique for the structural analysis of molecules in solids. We have designed a series of elemental 0 degrees pulses for the recoupling sequences with the rf phase rotation about the z-axis, known as CN. The proposed 0 degrees pulses whose total flip angle >/=360 degrees provide spin rotation vectors in the xy-plane. Thus, the residual spin rotation can be canceled by rf phase rotation about the z-axis. An analysis by the coherent averaging theory showed that effective bandwidths of the recoupling sequences are limited not by the reduction in the dipolar scaling factor but by the increase in the residual spin rotation due to offset. A CN sequence with these elemental pulses provides an effective bandwidth of DQ-dipolar recoupling from ca. 0.5nu(R) to 4nu(R) for numerical simulations. Here, nu(R) is the sample spinning frequency. The 0 degrees pulses were applied to band-selective recoupling for the magnetization transfer in uniformly 13C-labeled molecules. Narrow-band recoupling enhances the magnetization transfer between spins within the effective range by decoupling the dipolar interactions between spins one of which is outside the range. The narrow band operation reduces rf field strength, which improves the CH decoupling. Increases in signal intensities by the use of the proposed 0 degrees pulses are experimentally shown for 13C-labeled amino acids.
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Affiliation(s)
- Yoh Matsuki
- Division of Molecular Biophysics, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, 565-0871, Suita, Japan
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237
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Ernst M. Heteronuclear spin decoupling in solid-state NMR under magic-angle sample spinning. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2003; 162:1-34. [PMID: 12762980 DOI: 10.1016/s1090-7807(03)00074-0] [Citation(s) in RCA: 94] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Achieving high spectral resolution is an important prerequisite for the application of solid-state NMR to biological molecules. Higher spectral resolution allows to resolve a larger number of resonances and leads to higher sensitivity. Among other things, heteronuclear spin decoupling is one of the important factors which determine the resolution of a spectrum. The process of heteronuclear spin decoupling under magic-angle sample spinning is analyzed in detail. Continuous-wave RF irradiation leads only in a zeroth-order approximation to a full decoupling of heteronuclear spin systems in solids under magic-angle spinning (MAS). In a higher-order approximation, a cross-term between the dipolar-coupling tensor and the chemical-shielding tensor is reintroduced, providing a scaled coupling term between the heteronuclear spins. In strongly coupled spin systems this second-order recoupling term is partially averaged out by the proton spin-diffusion process, which leads to exchange-type narrowing of the line by proton spin flips. This process can be described by a spin-diffusion type superoperator, allowing the efficient simulation of strongly coupled spin systems under heteronuclear spin decoupling. Low-power continuous-wave decoupling at fast MAS frequencies offers an alternative to high-power irradiation by reversing the order of the averaging processes. At fast MAS frequencies low-power continuous-wave decoupling leads to significantly narrower lines than high-power continuous-wave decoupling while at the same time reducing the power dissipated in the sample by several orders of magnitude. The best decoupling is achieved by multiple-pulse sequences at high RF fields and under fast MAS. Two such sequences, two-pulse phase-modulated decoupling (TPPM) and X-inverse-X decoupling (XiX), are discussed and their properties analyzed and compared.
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Affiliation(s)
- Matthias Ernst
- Physical Chemistry, ETH-Zürich, CH-8093, Zürich, Switzerland.
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238
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Solid-state NMR heteronuclear dipolar recoupling using off-resonance symmetry-based pulse sequences. Chem Phys Lett 2003. [DOI: 10.1016/s0009-2614(03)00103-9] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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239
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Takegoshi K, Nakamura S, Terao T. 13C–1H dipolar-driven 13C–13C recoupling without 13C rf irradiation in nuclear magnetic resonance of rotating solids. J Chem Phys 2003. [DOI: 10.1063/1.1534105] [Citation(s) in RCA: 245] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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240
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Petkova AT, Baldus M, Belenky M, Hong M, Griffin RG, Herzfeld J. Backbone and side chain assignment strategies for multiply labeled membrane peptides and proteins in the solid state. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2003; 160:1-12. [PMID: 12565042 DOI: 10.1016/s1090-7807(02)00137-4] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
We demonstrate that the SPECIFIC CP technique can be used to obtain heteronuclear correlation (HETCOR) spectra of peptide backbones with greater efficiency than conventional HETCOR methods. We show that similar design principles can be employed to achieve selective homonuclear polarization transfer mediated through dipolar or scalar couplings. Both approaches are demonstrated in a tripeptide with uniform 15N and 13C labeling, and with uniform 15N labeling and natural abundance 13C. In other applications, the high efficiency of the heteronuclear SPECIFIC CP transfer allows discrimination of single amide signals in the 248-residue membrane protein bacteriorhodopsin (bR). In particular, variations are detected in the ordering of the Ala81-Arg82 peptide bond among the photocycle intermediates of bR and SPECIFIC CP is used to correlate 15N and 13C signals from the three Val-Pro peptide bonds.
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Affiliation(s)
- Aneta T Petkova
- Department of Chemistry and Keck Institute for Cellular Visualization, Brandeis University, 02454-9110, Waltham, MA, USA
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241
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Castellani F, van Rossum B, Diehl A, Schubert M, Rehbein K, Oschkinat H. Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy. Nature 2002; 420:98-102. [PMID: 12422222 DOI: 10.1038/nature01070] [Citation(s) in RCA: 693] [Impact Index Per Article: 31.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2002] [Accepted: 08/06/2002] [Indexed: 11/09/2022]
Abstract
The determination of a representative set of protein structures is a chief aim in structural genomics. Solid-state NMR may have a crucial role in structural investigations of those proteins that do not easily form crystals or are not accessible to solution NMR, such as amyloid systems or membrane proteins. Here we present a protein structure determined by solid-state magic-angle-spinning (MAS) NMR. Almost complete (13)C and (15)N resonance assignments for a micro-crystalline preparation of the alpha-spectrin Src-homology 3 (SH3) domain formed the basis for the extraction of a set of distance restraints. These restraints were derived from proton-driven spin diffusion (PDSD) spectra of biosynthetically site-directed, labelled samples obtained from bacteria grown using [1,3-(13)C]glycerol or [2-(13)C]glycerol as carbon sources. This allowed the observation of long-range distance correlations up to approximately 7 A. The calculated global fold of the alpha-spectrin SH3 domain is based on 286 inter-residue (13)C-(13)C and six (15)N-(15)N restraints, all self-consistently obtained by solid-state MAS NMR. This MAS NMR procedure should be widely applicable to small membrane proteins that can be expressed in bacteria.
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Affiliation(s)
- Federica Castellani
- Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Strasse 10, 13125 Berlin, Germany
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242
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Wi S, Logan JW, Sakellariou D, Walls JD, Pines A. Rotary resonance recoupling for half-integer quadrupolar nuclei in solid-state nuclear magnetic resonance spectroscopy. J Chem Phys 2002. [DOI: 10.1063/1.1506907] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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243
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Kaji H, Schmidt-Rohr K. Selective Observation and Quantification of Amorphous Trans Conformers in Doubly 13C-Labeled Poly(ethylene terephthalate), PET, by Zero-Quantum Magic-Angle-Spinning Solid-State NMR. Macromolecules 2002. [DOI: 10.1021/ma020246j] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hironori Kaji
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, and Institute for Chemical Research, Kyoto University, Uji, Kyoto, 611-0011, Japan
| | - Klaus Schmidt-Rohr
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, and Institute for Chemical Research, Kyoto University, Uji, Kyoto, 611-0011, Japan
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244
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Wi S, Heise H, Pines A. Reintroducing anisotropic interactions in magic-angle-spinning NMR of half-integer quadrupolar nuclei: 3D MQMAS. J Am Chem Soc 2002; 124:10652-3. [PMID: 12207509 DOI: 10.1021/ja027043v] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Selective reintroduction of anisotropic interactions such as the chemical shift anisotropy (CSA) and homonucler dipolar (HMD) coupling were implemented in a high-resolution NMR spectroscopy for half-integer quadrupolar nuclei. Rotary resonance recoupling (R(3)) combined with the multiple-quantum magic-angle spinning (MQMAS) in a three-dimensional (3D) experiment provides not only site-specific high-resolution spectra to yield the quadrupolar interaction parameters but also the CSA or HMD interaction parameters. This 3D experiment provides an avenue for the complete local structural information of half-integer quadrupolar nuclei. Three-dimensional MQMAS experiments incorporating R(3) of HMD and CSA interactions were demonstrated on model compounds containing (11)B, (23)Na, and (87)Rb nuclei.
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Affiliation(s)
- Sungsool Wi
- Materials Sciences Division, Lawrence Berkeley National Laboratory and Department of Chemistry, University of California at Berkeley, Berkeley, CA 94720, USA
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245
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Hohwy M, Rienstra CM, Griffin RG. Band-selective homonuclear dipolar recoupling in rotating solids. J Chem Phys 2002. [DOI: 10.1063/1.1488136] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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246
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Abstract
Over the last decades, NMR spectroscopy has grown into an indispensable tool for chemical analysis, structure determination, and the study of dynamics in organic, inorganic, and biological systems. It is commonly used for a wide range of applications from the characterization of synthetic products to the study of molecular structures of systems such as catalysts, polymers, and proteins. Although most NMR experiments are performed on liquid-state samples, solid-state NMR is rapidly emerging as a powerful method for the study of solid samples and materials. This Review outlines some of the developments of solid-state NMR spectroscopy, including techniques such as cross-polarization, magic-angle spinning, multiple-pulse sequences, homo- and heteronuclear decoupling and recoupling techniques, multiple-quantum spectroscopy, and dynamic angle spinning, as well as their applications to structure determination. Modern solid-state NMR spectroscopic techniques not only produce spectra with a resolution close to that of liquid-state spectra, but also capitalize on anisotropic interactions, which are often unavailable for liquid samples. With this background, the future of solid-state NMR spectroscopy in chemistry appears to be promising, indeed.
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Affiliation(s)
- David D Laws
- Materials Sciences Division, Lawrence Berkeley National Laboratory and Department of Chemistry, University of California at Berkeley, Berkeley, CA 94720, USA
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247
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248
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Hafner S, Demco DE. Solid-state NMR spectroscopy under periodic modulation by fast magic-angle sample spinning and pulses: a review. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2002; 22:247-274. [PMID: 12469814 DOI: 10.1006/snmr.2002.0088] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Fast magic-angle spinning (MAS) holds promise for new approaches to pulsed high-resolution NMR in solids where homogeneous interactions dominate. Prerequisite for developing new pulse methods is the understanding of signal encoding by spin interactions under MAS conditions and of interferences between MAS and pulses. This review discusses corresponding strategies and techniques in a coherent way with particular concentration on homonuclear decoupling techniques for line-narrowing in solids.
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Affiliation(s)
- S Hafner
- Varian Deutschland GmbH, Alsfelderstrasse 6, D-64289 Darmstadt, Germany.
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249
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Rienstra CM, Tucker-Kellogg L, Jaroniec CP, Hohwy M, Reif B, McMahon MT, Tidor B, Lozano-Pérez T, Griffin RG. De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy. Proc Natl Acad Sci U S A 2002; 99:10260-5. [PMID: 12149447 PMCID: PMC124901 DOI: 10.1073/pnas.152346599] [Citation(s) in RCA: 211] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2002] [Accepted: 06/10/2002] [Indexed: 11/18/2022] Open
Abstract
The three-dimensional structure of the chemotactic peptide N-formyl-l-Met-l-Leu-l-Phe-OH was determined by using solid-state NMR (SSNMR). The set of SSNMR data consisted of 16 (13)C-(15)N distances and 18 torsion angle constraints (on 10 angles), recorded from uniformly (13)C,(15)N- and (15)N-labeled samples. The peptide's structure was calculated by means of simulated annealing and a newly developed protocol that ensures that all of conformational space, consistent with the structural constraints, is searched completely. The result is a high-quality structure of a molecule that has thus far not been amenable to single-crystal diffraction studies. The extensions of the SSNMR techniques and computational methods to larger systems appear promising.
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Affiliation(s)
- Chad M Rienstra
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
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Kristiansen PE, Mitchell DJ, Evans JNS. Double-quantum dipolar recoupling at high magic-angle spinning rates. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2002; 157:253-266. [PMID: 12323144 DOI: 10.1006/jmre.2002.2594] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
A full investigation of the possible homonuclear double-quantum recoupling sequences, based on the RN family of sequences with N < or = 20, is given. Several new RN sequences, R16(6)(5), R18(8)(5), and R18(10)(5), were applied at high magic-angle spinning rates and compared with theory. The R18(10)(5) technique can be used to recouple dipolar couplings at spinning rates up to 39 kHz, and the application of the sequence in an INADEQUATE experiment is shown for a spinning rate of 30 kHz.
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Affiliation(s)
- Per Eugen Kristiansen
- School of Molecular Biosciences, Washington State University, Pullman, 99164-4660, USA
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