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For: Keightley PD, Trivedi U, Thomson M, Oliver F, Kumar S, Blaxter ML. Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res 2009;19:1195-201. [PMID: 19439516 DOI: 10.1101/gr.091231.109] [Citation(s) in RCA: 268] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Number Cited by Other Article(s)
201
Pool JE, Corbett-Detig RB, Sugino RP, Stevens KA, Cardeno CM, Crepeau MW, Duchen P, Emerson JJ, Saelao P, Begun DJ, Langley CH. Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture. PLoS Genet 2012;8:e1003080. [PMID: 23284287 PMCID: PMC3527209 DOI: 10.1371/journal.pgen.1003080] [Citation(s) in RCA: 229] [Impact Index Per Article: 19.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2012] [Accepted: 09/27/2012] [Indexed: 11/25/2022]  Open
202
Extraordinary genome stability in the ciliate Paramecium tetraurelia. Proc Natl Acad Sci U S A 2012;109:19339-44. [PMID: 23129619 DOI: 10.1073/pnas.1210663109] [Citation(s) in RCA: 90] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
203
Carmel I, Shomron N, Heifetz Y. Does base-pairing strength play a role in microRNA repression? RNA (NEW YORK, N.Y.) 2012;18:1947-1956. [PMID: 23019592 PMCID: PMC3479386 DOI: 10.1261/rna.032185.111] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2011] [Accepted: 06/11/2012] [Indexed: 06/01/2023]
204
Obbard DJ, Maclennan J, Kim KW, Rambaut A, O'Grady PM, Jiggins FM. Estimating divergence dates and substitution rates in the Drosophila phylogeny. Mol Biol Evol 2012;29:3459-73. [PMID: 22683811 PMCID: PMC3472498 DOI: 10.1093/molbev/mss150] [Citation(s) in RCA: 162] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
205
Drift-barrier hypothesis and mutation-rate evolution. Proc Natl Acad Sci U S A 2012;109:18488-92. [PMID: 23077252 DOI: 10.1073/pnas.1216223109] [Citation(s) in RCA: 260] [Impact Index Per Article: 21.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
206
Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii. Genetics 2012;192:1447-54. [PMID: 23051642 DOI: 10.1534/genetics.112.145078] [Citation(s) in RCA: 87] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
207
Saxer G, Havlak P, Fox SA, Quance MA, Gupta S, Fofanov Y, Strassmann JE, Queller DC. Whole genome sequencing of mutation accumulation lines reveals a low mutation rate in the social amoeba Dictyostelium discoideum. PLoS One 2012;7:e46759. [PMID: 23056439 PMCID: PMC3466296 DOI: 10.1371/journal.pone.0046759] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2012] [Accepted: 09/03/2012] [Indexed: 12/18/2022]  Open
208
Langley CH, Stevens K, Cardeno C, Lee YCG, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, Song YS, Hahn MW, Begun DJ. Genomic variation in natural populations of Drosophila melanogaster. Genetics 2012;192:533-98. [PMID: 22673804 PMCID: PMC3454882 DOI: 10.1534/genetics.112.142018] [Citation(s) in RCA: 243] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2011] [Accepted: 05/24/2012] [Indexed: 02/07/2023]  Open
209
Kong A, Frigge ML, Masson G, Besenbacher S, Sulem P, Magnusson G, Gudjonsson SA, Sigurdsson A, Jonasdottir A, Jonasdottir A, Wong WSW, Sigurdsson G, Walters GB, Steinberg S, Helgason H, Thorleifsson G, Gudbjartsson DF, Helgason A, Magnusson OT, Thorsteinsdottir U, Stefansson K. Rate of de novo mutations and the importance of father's age to disease risk. Nature 2012;488:471-5. [PMID: 22914163 PMCID: PMC3548427 DOI: 10.1038/nature11396] [Citation(s) in RCA: 1371] [Impact Index Per Article: 114.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2012] [Accepted: 07/04/2012] [Indexed: 02/06/2023]
210
Leffler EM, Bullaughey K, Matute DR, Meyer WK, Ségurel L, Venkat A, Andolfatto P, Przeworski M. Revisiting an old riddle: what determines genetic diversity levels within species? PLoS Biol 2012;10:e1001388. [PMID: 22984349 PMCID: PMC3439417 DOI: 10.1371/journal.pbio.1001388] [Citation(s) in RCA: 334] [Impact Index Per Article: 27.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
211
Zhu Y, Bergland AO, González J, Petrov DA. Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster. PLoS One 2012;7:e41901. [PMID: 22848651 PMCID: PMC3406057 DOI: 10.1371/journal.pone.0041901] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2012] [Accepted: 06/28/2012] [Indexed: 11/26/2022]  Open
212
Small inverted repeats drive mitochondrial genome evolution in Lake Baikal sponges. Gene 2012;505:91-9. [PMID: 22669046 DOI: 10.1016/j.gene.2012.05.039] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2012] [Revised: 05/15/2012] [Accepted: 05/17/2012] [Indexed: 12/31/2022]
213
Smith G, Lohse K, Etges WJ, Ritchie MG. Model-based comparisons of phylogeographic scenarios resolve the intraspecific divergence of cactophilic Drosophila mojavensis. Mol Ecol 2012;21:3293-307. [PMID: 22571504 DOI: 10.1111/j.1365-294x.2012.05604.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
214
Crawford JE, Lazzaro BP. Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data. Front Genet 2012;3:66. [PMID: 22536207 PMCID: PMC3334522 DOI: 10.3389/fgene.2012.00066] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2012] [Accepted: 04/05/2012] [Indexed: 01/17/2023]  Open
215
Beal MA, Glenn TC, Somers CM. Whole genome sequencing for quantifying germline mutation frequency in humans and model species: cautious optimism. Mutat Res 2012;750:96-106. [PMID: 22178956 DOI: 10.1016/j.mrrev.2011.11.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2011] [Revised: 11/29/2011] [Accepted: 11/30/2011] [Indexed: 05/31/2023]
216
Denver DR, Wilhelm LJ, Howe DK, Gafner K, Dolan PC, Baer CF. Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes. Genome Biol Evol 2012;4:513-22. [PMID: 22436997 PMCID: PMC3342874 DOI: 10.1093/gbe/evs028] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
217
Izutsu M, Zhou J, Sugiyama Y, Nishimura O, Aizu T, Toyoda A, Fujiyama A, Agata K, Fuse N. Genome features of "Dark-fly", a Drosophila line reared long-term in a dark environment. PLoS One 2012;7:e33288. [PMID: 22432011 PMCID: PMC3303825 DOI: 10.1371/journal.pone.0033288] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2011] [Accepted: 02/08/2012] [Indexed: 11/22/2022]  Open
218
The role of background selection in shaping patterns of molecular evolution and variation: evidence from variability on the Drosophila X chromosome. Genetics 2012;191:233-46. [PMID: 22377629 DOI: 10.1534/genetics.111.138073] [Citation(s) in RCA: 94] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
219
Kourilsky P. Selfish cellular networks and the evolution of complex organisms. C R Biol 2012;335:169-79. [PMID: 22464425 DOI: 10.1016/j.crvi.2012.01.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2011] [Accepted: 01/06/2012] [Indexed: 10/28/2022]
220
Keightley PD. Rates and fitness consequences of new mutations in humans. Genetics 2012;190:295-304. [PMID: 22345605 PMCID: PMC3276617 DOI: 10.1534/genetics.111.134668] [Citation(s) in RCA: 108] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2011] [Accepted: 11/13/2011] [Indexed: 12/13/2022]  Open
221
Burke GR, Strand MR. Polydnaviruses of Parasitic Wasps: Domestication of Viruses To Act as Gene Delivery Vectors. INSECTS 2012;3:91-119. [PMID: 26467950 PMCID: PMC4553618 DOI: 10.3390/insects3010091] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2011] [Revised: 01/07/2012] [Accepted: 01/16/2012] [Indexed: 12/21/2022]
222
Gundry M, Vijg J. Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants. Mutat Res 2012;729:1-15. [PMID: 22016070 PMCID: PMC3237897 DOI: 10.1016/mrfmmm.2011.10.001 10.1016/j.mrfmmm.2011.10.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2011] [Revised: 09/23/2011] [Accepted: 10/05/2011] [Indexed: 08/15/2023]
223
Charlesworth B. The effects of deleterious mutations on evolution at linked sites. Genetics 2012;190:5-22. [PMID: 22219506 PMCID: PMC3249359 DOI: 10.1534/genetics.111.134288] [Citation(s) in RCA: 215] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2011] [Accepted: 11/04/2011] [Indexed: 01/14/2023]  Open
224
Gilad Y. Using genomic tools to study regulatory evolution. Methods Mol Biol 2012;856:335-61. [PMID: 22399466 PMCID: PMC4011178 DOI: 10.1007/978-1-61779-585-5_14] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
225
Lee YCG, Reinhardt JA. Widespread polymorphism in the positions of stop codons in Drosophila melanogaster. Genome Biol Evol 2011;4:533-49. [PMID: 22051795 PMCID: PMC3342867 DOI: 10.1093/gbe/evr113] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/28/2011] [Indexed: 12/19/2022]  Open
226
Schrider DR, Hourmozdi JN, Hahn MW. Pervasive multinucleotide mutational events in eukaryotes. Curr Biol 2011;21:1051-4. [PMID: 21636278 DOI: 10.1016/j.cub.2011.05.013] [Citation(s) in RCA: 104] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2011] [Revised: 04/12/2011] [Accepted: 05/05/2011] [Indexed: 10/18/2022]
227
Gundry M, Vijg J. Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants. Mutat Res 2011;729:1-15. [PMID: 22016070 DOI: 10.1016/j.mrfmmm.2011.10.001] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2011] [Revised: 09/23/2011] [Accepted: 10/05/2011] [Indexed: 12/20/2022]
228
Fort P, Albertini A, Van-Hua A, Berthomieu A, Roche S, Delsuc F, Pasteur N, Capy P, Gaudin Y, Weill M. Fossil rhabdoviral sequences integrated into arthropod genomes: ontogeny, evolution, and potential functionality. Mol Biol Evol 2011;29:381-90. [PMID: 21917725 DOI: 10.1093/molbev/msr226] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
229
Altshuler I, Demiri B, Xu S, Constantin A, Yan ND, Cristescu ME. An integrated multi-disciplinary approach for studying multiple stressors in freshwater ecosystems: Daphnia as a model organism. Integr Comp Biol 2011;51:623-33. [PMID: 21873644 DOI: 10.1093/icb/icr103] [Citation(s) in RCA: 106] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
230
Qiu S, Zeng K, Slotte T, Wright S, Charlesworth D. Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species. Genome Biol Evol 2011;3:868-80. [PMID: 21856647 PMCID: PMC3296465 DOI: 10.1093/gbe/evr085] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]  Open
231
de Procé SM, Zeng K, Betancourt AJ, Charlesworth B. Selection on codon usage and base composition in Drosophila americana. Biol Lett 2011;8:82-5. [PMID: 21849309 DOI: 10.1098/rsbl.2011.0601] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
232
Ho SYW, Lanfear R, Bromham L, Phillips MJ, Soubrier J, Rodrigo AG, Cooper A. Time-dependent rates of molecular evolution. Mol Ecol 2011;20:3087-101. [PMID: 21740474 DOI: 10.1111/j.1365-294x.2011.05178.x] [Citation(s) in RCA: 360] [Impact Index Per Article: 27.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
233
Yeasty clocks: dating genomic changes in yeasts. C R Biol 2011;334:620-8. [PMID: 21819943 DOI: 10.1016/j.crvi.2011.05.010] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2010] [Accepted: 03/17/2011] [Indexed: 02/04/2023]
234
Inference of site frequency spectra from high-throughput sequence data: quantification of selection on nonsynonymous and synonymous sites in humans. Genetics 2011;188:931-40. [PMID: 21596896 DOI: 10.1534/genetics.111.128355] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
235
In vitro evolution goes deep. Proc Natl Acad Sci U S A 2011;108:8071-2. [PMID: 21551096 DOI: 10.1073/pnas.1104843108] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
236
Schneeberger K, Weigel D. Fast-forward genetics enabled by new sequencing technologies. TRENDS IN PLANT SCIENCE 2011;16:282-8. [PMID: 21439889 DOI: 10.1016/j.tplants.2011.02.006] [Citation(s) in RCA: 120] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2010] [Revised: 02/09/2011] [Accepted: 02/11/2011] [Indexed: 05/18/2023]
237
Hartfield M, Otto SP. RECOMBINATION AND HITCHHIKING OF DELETERIOUS ALLELES. Evolution 2011;65:2421-34. [DOI: 10.1111/j.1558-5646.2011.01311.x] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
238
Lawrie DS, Petrov DA, Messer PW. Faster than neutral evolution of constrained sequences: the complex interplay of mutational biases and weak selection. Genome Biol Evol 2011;3:383-95. [PMID: 21498884 PMCID: PMC3101017 DOI: 10.1093/gbe/evr032] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]  Open
239
Circumventing heterozygosity: sequencing the amplified genome of a single haploid Drosophila melanogaster embryo. Genetics 2011;188:239-46. [PMID: 21441209 PMCID: PMC3122310 DOI: 10.1534/genetics.111.127530] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
240
Appels R, Adelson DL, Moolhuijzen P, Webster H, Barrero R, Bellgard M. Genome studies at the PAG 2011 conference. Funct Integr Genomics 2011;11:1-11. [PMID: 21360134 DOI: 10.1007/s10142-011-0215-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2011] [Revised: 02/15/2011] [Accepted: 02/15/2011] [Indexed: 01/15/2023]
241
Haddrill PR, Zeng K, Charlesworth B. Determinants of synonymous and nonsynonymous variability in three species of Drosophila. Mol Biol Evol 2010;28:1731-43. [PMID: 21191087 DOI: 10.1093/molbev/msq354] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
242
Babbitt GA, Cotter CR. Functional conservation of nucleosome formation selectively biases presumably neutral molecular variation in yeast genomes. Genome Biol Evol 2010;3:15-22. [PMID: 21135411 PMCID: PMC3014273 DOI: 10.1093/gbe/evq081] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
243
Lucas-Lledó JI, Maddamsetti R, Lynch M. Phylogenomic analysis of the uracil-DNA glycosylase superfamily. Mol Biol Evol 2010;28:1307-17. [PMID: 21135150 DOI: 10.1093/molbev/msq318] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
244
Zeng K, Charlesworth B. The effects of demography and linkage on the estimation of selection and mutation parameters. Genetics 2010;186:1411-24. [PMID: 20923980 PMCID: PMC2998320 DOI: 10.1534/genetics.110.122150] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2010] [Accepted: 09/27/2010] [Indexed: 11/18/2022]  Open
245
Obbard DJ, Jiggins FM, Bradshaw NJ, Little TJ. Recent and recurrent selective sweeps of the antiviral RNAi gene Argonaute-2 in three species of Drosophila. Mol Biol Evol 2010;28:1043-56. [PMID: 20978039 PMCID: PMC3021790 DOI: 10.1093/molbev/msq280] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
246
Yu G. GenHtr: a tool for comparative assessment of genetic heterogeneity in microbial genomes generated by massive short-read sequencing. BMC Bioinformatics 2010;11:508. [PMID: 20939910 PMCID: PMC2967562 DOI: 10.1186/1471-2105-11-508] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2010] [Accepted: 10/12/2010] [Indexed: 12/02/2022]  Open
247
Siol M, Wright SI, Barrett SCH. The population genomics of plant adaptation. THE NEW PHYTOLOGIST 2010;188:313-32. [PMID: 20696011 DOI: 10.1111/j.1469-8137.2010.03401.x] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
248
Brockhurst MA, Colegrave N, Rozen DE. Next-generation sequencing as a tool to study microbial evolution. Mol Ecol 2010;20:972-80. [PMID: 20874764 DOI: 10.1111/j.1365-294x.2010.04835.x] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Nishant KT, Wei W, Mancera E, Argueso JL, Schlattl A, Delhomme N, Ma X, Bustamante CD, Korbel JO, Gu Z, Steinmetz LM, Alani E. The baker's yeast diploid genome is remarkably stable in vegetative growth and meiosis. PLoS Genet 2010;6:e1001109. [PMID: 20838597 PMCID: PMC2936533 DOI: 10.1371/journal.pgen.1001109] [Citation(s) in RCA: 84] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2010] [Accepted: 08/03/2010] [Indexed: 11/18/2022]  Open
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Hershberg R, Petrov DA. Evidence that mutation is universally biased towards AT in bacteria. PLoS Genet 2010;6:e1001115. [PMID: 20838599 PMCID: PMC2936535 DOI: 10.1371/journal.pgen.1001115] [Citation(s) in RCA: 304] [Impact Index Per Article: 21.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2010] [Accepted: 08/09/2010] [Indexed: 11/19/2022]  Open
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