Significant acidification in major Chinese croplands

Complete ammonia oxidization in agricultural soils: High ammonia fertilizer loss but low N2 O production

The contribution of agriculture to the sustainable development goals requires climate-smart and profitable farm innovations. Increasing the ammonia fertilizer applications to meet the global food demands results in high agricultural costs, environmental quality deterioration, and global warming, without a significant increase in crop yield. Here, we reported that a third microbial ammonia oxidation process, complete ammonia oxidation (comammox), is contributing to a significant ammonia fertilizer loss (41.9 ± 4.8%) at the rate of 3.53 ± 0.55 mg N kg^-1 day^-1 in agricultural soils around the world. The contribution of comammox to ammonia fertilizer loss, occurring mainly in surface agricultural soil profiles (0-0.2 m), was equivalent to that of bacterial ammonia oxidation (48.6 ± 4.5%); both processes were significantly more important than archaeal ammonia oxidation (9.5 ± 3.6%). In contrast, comammox produced less N₂ O (0.98 ± 0.44 μg N kg^-1 day^-1 , 11.7 ± 3.1%), comparable to that produced by archaeal ammonia oxidation (16.4 ± 4.4%) but significantly lower than that of bacterial ammonia oxidation (72.0 ± 5.1%). The efficiency of ammonia conversion to N₂ O by comammox (0.02 ± 0.01%) was evidently lower than that of bacterial (0.24 ± 0.06%) and archaeal (0.16 ± 0.04%) ammonia oxidation. The comammox rate increased with increasing soil pH values, which is the only physicochemical characteristic that significantly influenced both comammox bacterial abundance and rates. Ammonia fertilizer loss, dominated by comammox and bacterial ammonia oxidation, was more intense in soils with pH >6.5 than in soils with pH <6.5. Our results revealed that comammox plays a vital role in ammonia fertilizer loss and sustainable development in agroecosystems that have been previously overlooked for a long term.

Heavy metal contamination and risk assessment in winter jujube (Ziziphus jujuba Mill. cv. Dongzao)

Winter jujube (Ziziphus jujuba Mill. cv. Dongzao) is a major fresh-eating jujube fruit with various important nutrients for humans. It can absorb heavy metals from polluted air, water and soils and applied pesticides, which may pose potential threats to consumers. Here, to evaluate the content of heavy metals in winter jujube and systematically evaluate the potential risks, we collected 212 winter jujube samples from four main producing areas in China and determined the contents of eight heavy metals (Cd, Cr, Pb, Ni, Cu, Zn, As, and Mn) using inductively coupled plasma mass spectrometer (ICP-MS). Based on the integrated pollution index (IPI) evaluation standard, more than 99.06% of samples were at safe levels. Moreover, clustering analysis divided the eight heavy metals into four groups, namely Cr/Ni, Cd/Pb, Cu/Mn/Zn, and As. Importantly, none of the analyzed heavy metals posed risks to adults as indicted by the average carcinogenic and non-carcinogenic risks. Notably, Cr and Cd could pose low carcinogenic risks to children (≤12 age group) when their concentration reached the 90^th percentile. This study systematically assessed the health risks associated with heavy metal intake through winter jujube consumption and highlighted the necessity of constant heavy metal monitoring in winter jujube.

Genotypic variation in carbon and nitrogen metabolism in the cotton subtending leaves and seed cotton yield under various nitrogen levels

BACKGROUND

Nitrogen (N) is the key nutrient required for high cotton production; however, its excessive use can increase the cost of production and environmental problems. Reducing the application of N while sustaining the yield is an important issue to be solved. Therefore, this study was designed to investigate the genotypic variations in subtending leaf physiology and its contribution to seed cotton yield of contrasting N-efficient cotton genotypes under various N levels in pot and field conditions.

RESULTS

The results showed that the application of N increased the enzymatic activities related to carbon (C) and N metabolisms. Under the same N level, the C/N metabolisms of the N-efficient genotypes were significantly higher than N-inefficient genotypes, indicating a strong N assimilation and photoassimilation ability in N-efficient genotypes, especially under low N level. Moreover, the antioxidant enzymatic activities were significantly higher, whereas malondialdehyde content was lower in N-efficient cotton genotypes than in N-inefficient ones. Therefore, N-efficient cotton genotypes showed strong resistance, higher C/N metabolisms, and provided sufficient dry matter for boll development. As a result, the yield, N use efficiency, and value cost ratio of the N-efficient cotton genotypes were higher than in the N-inefficient genotypes.

CONCLUSION

It was confirmed that the higher C/N metabolisms in the cotton subtending leaves of N-efficient cotton genotypes could support higher seed cotton yield under relatively low N application. © 2022 Society of Chemical Industry.

Determining optimal nitrogen management to improve rice yield, quality and nitrogen use efficiency based on multi-index decision analysis method

BACKGROUND

Reasonable nitrogen (N) supply is critical for increasing rice yield while improving grain quality and nitrogen use efficiency (NUE). However, the trade-off relationship between yield, quality and NUE of rice under N management has not been well understood enough. In the present study, a 2-year field experiment was conducted to identify optimal N fertilizer management practices that resulted in high-yield, high-quality and high-NUE by using the technique for order preference by similarity to an ideal solution (TOPSIS) with entropy weight (EW) method.

RESULTS

All the parameters of rice yield, quality and efficiency were remarkably affected by fertilization treatments. Compared with farmer's fertilization practice (FFP), optimizing N fertilizer treatment (OPT) and substituting 20% of N fertilizer with pig manure based on OPT treatment (OPTM) increased grain yield (2.87-6.62%) by maintaining higher 1000-grain weight and filled grains rate. The agronomic NUE (AE) and N partial factor productivity (PFP) under OPT and OPTM treatment were also remarkably increased by 32.81-43.01% and 28.59-33.28% with respect to the value under FFP treatment, respectively. Meanwhile, OPT and OPTM significantly improved the milling quality of rice by increasing brown rice rate (0.71-1.17%) and head rice rate (1.34-2.31%). OPT and OPTM significantly improved appearance quality by decreasing chalkiness and eating quality by reducing amylose content in 2020. The TOPSIS with EW showed that rice comprehensive evaluation could be maintained at a high level under OPT and OPTM.

CONCLUSION

OPT and OPTM were nutrient management modes of high-yield, high-quality and high-efficiency, and promising practice to improve rice comprehensive productivity. This strategy is also highly-consistent with the United Nations Sustainable Development Goals. © 2023 Society of Chemical Industry.

Optimizing Agronomic, Environmental, Health and Economic Performances in Summer Maize Production through Fertilizer Nitrogen Management Strategies

Although nitrogen (N) fertilizer application plays an essential role in improving crop productivity, an inappropriate management can result in negative impacts on environment and human health. To break this dilemma, a 12-year field experiment (2008-2019) with five N application rates was conducted on the North China Plain (NCP) to evaluate the integrated impacts of optimizing N management (Opt. N, 160 kg N ha-1 on average) on agronomic, environmental, health, and economic performances of summer maize production. Over the 12-year study, the Opt. N treatment achieved the maximal average grain yield (10.6 Mg ha-1) and grain protein yield (793 kg ha-1) among five N treatments. The life cycle assessment methodology was applied to determine the negative impacts on environmental and human health, and both of them increased with the N rate. Compared with the farmers' conventional N rate (250 kg N ha-1), the Opt. N treatment reduced acidification, eutrophication, global warming, and energy depletion potentials by 29%, 42%, 35%, and 18%, respectively, and reduced the health impact by 32% per Mg of grain yield or grain protein yield produced. Both the Opt. N and Opt. N*50-70% treatments resulted in high private profitability (2038 USD ha-1), ecosystem economic benefit (1811 USD ha-1), and integrated compensation benefit (17,548 USD ha-1). This study demonstrates the potential benefits of long-term optimizing of N management to maintain high maize yields and grain quality, to reduce various environmental impacts and health impacts, and to enhance economic benefits. These benefits can be further enhanced when Opt. N was combined with advanced agronomic management practices. The results also suggest that reducing the optimal N rate from 160 to 145 kg N ha-1 is achievable to further reduce the negative impacts while maintaining high crop productivity. In conclusion, optimizing the N management is essential to promote sustainable summer maize production on the NCP.

Potential mitigation of environmental impacts of intensive plum production in southeast China with maintenance of high yields: Evaluation using life cycle assessment

Introduction

Intensive plum production usually involves high yields but also high environmental costs due to excessive fertilizer inputs. Quantitative analysis of the environmental effects of plum production is thereby required in the development of optimum strategies to promote sustainable fruit production.

Methods

We collected survey questionnaires from 254 plum production farms in Zhao'an county, Fujian province, southeast China to assess the environmental impacts by life cycle assessment (LCA) methodology. The farms were categorized into four groups based on yield and environmental impacts, i.e., LL (low yield and low environmental impact), LH (low yield but high environmental impact), HL (high yield but low environmental impact), and HH (high yield and high environmental impact).

Results

The environmental impacts, i.e., average energy depletion, global warming, acidification, and eutrophication potential in plum production were 18.17 GJ ha-1, 3.63 t CO2 eq ha-1, 42.18 kg SO2 eq ha-1, and 25.06 kg PO4 eq ha-1, respectively. Only 19.7% of farmers were in the HL group, with 13.3% in the HH group, 39.0% in LL, and 28.0% LH. Plum yields of the HL group were 109-114% higher than the mean value of all 254 farms. Additionally, the HL group had a lower environmental impact per unit area compared to the overall mean value, with a reduction ranging from 31.9% to 36.7%. Furthermore, on a per tonne of plum production basis, the energy depletion, global warming potential, acidification potential, and eutrophication potential of HL farms were lower by 75.4%, 75.0%, 75.6%, and 75.8%, respectively. Overall, the total environmental impact index of LL, LH, HL, and HH groups were 0.26, 0.42, 0.06, and 0.21, respectively.

Discussion

Excessive fertilizer N application was the main source of the environmental impacts, the potential to reduce fertilizer N rate can be achieved without compromising plum yield by studying the HH group. The results provide an important foundation for enhancing the management of plum production, in order to promote 'green' agricultural development by reducing environmental impacts.

The reciprocal changes in dominant species with complete metabolic functions explain the decoupling phenomenon of microbial taxonomic and functional composition in a grassland

The decoupling of microbial functional and taxonomic components refers to the phenomenon that a drastic change in microbial taxonomic composition leads to no or only a gentle change in functional composition. Although many studies have identified this phenomenon, the mechanisms underlying it are still unclear. Here we demonstrate, using metagenomics data from a steppe grassland soil under different grazing and phosphorus addition treatments, that there is no “decoupling” in the variation of taxonomic and metabolic functional composition of the microbial community within functional groups at species level. In contrast, the high consistency and complementarity between the abundance and functional gene diversity of two dominant species made metabolic functions unaffected by grazing and phosphorus addition. This complementarity between the two dominant species shapes a bistability pattern that differs from functional redundancy in that only two species cannot form observable redundancy in a large microbial community. In other words, the “monopoly” of metabolic functions by the two most abundant species leads to the disappearance of functional redundancy. Our findings imply that for soil microbial communities, the impact of species identity on metabolic functions is much greater than that of species diversity, and it is more important to monitor the dynamics of key dominant microorganisms for accurately predicting the changes in the metabolic functions of the ecosystems.

Mixed organic and inorganic amendments enhance soil microbial interactions and environmental stress resistance of Tibetan barley on plateau farmland

Sufficient crop yield while maintaining soil health and sustainable agricultural development is a global objective, serving a special challenge to certain climate-sensitive plateau areas. Despite conducting trails on a variety of soil amendments in plateau areas, systematic research is lacking regarding the influences of organic and inorganic amendments on soil quality, particularly soil microbiome. To our knowledge, this was the first study that compared the effects of inorganic, organic, and mixed amendments on typical plateau crop hulless barley (Hordeum vulgare L. var. Nudum, also known as "Qingke" in Chinese) over the course of tillering, jointing, and ripening. Microbial communities and their responses to amendments, soil properties and Tibetan hulless barley growth, yield were investigated. Results indicated that mixed organic and inorganic amendments promoted the abundance of rhizosphere microorganisms, enhancing the rhizosphere root-microbes interactions and resistance to pathogenic bacteria and environmental stresses. The rhizosphere abundant and significantly different genera Arthrobacter, Rhodanobacter, Sphingomona, Nocardioides and so on demonstrated their unique adaptation to the plateau environment based on the results of metagenomic binning. The abundance of 23 genes about plant growth and environmental adaptations in the mixed amendment soil were significantly higher than other treatments. Findings from this study suggest that the mixed organic/inorganic amendments can help establish a healthy microbiome and increase soil quality while achieving sufficient hulless barley yields in Tibet and presumably other similar geographic areas of high altitude.

Source Apportionment and Model Applicability of Heavy Metal Pollution in Farmland Soil Based on Three Receptor Models

The identification of the source of heavy metal pollution and its quantification are the prerequisite of soil pollution control. The APCS-MLR, UNMIX and PMF models were employed to apportion pollution sources of Cu, Zn, Pb, Cd, Cr and Ni of the farmland soil in the vicinity of an abandoned iron and steel plant. The sources, contribution rates and applicability of the models were evaluated. The potential ecological risk index revealed greatest ecological risk from Cd. The results of source apportionment illustrated that the APCS-MLR and UNMIX models could verify each other for accurate allocation of pollution sources. The industrial sources were the main sources of pollution (32.41~38.42%), followed by agricultural sources (29.35~31.65%) and traffic emission sources (21.03~21.51%); and the smallest proportion was from natural sources of pollution (11.2~14.42%). The PMF model was easily affected by outliers and its fitting degree was not ideal, leading to be unable to get more accurate results of source analysis. The combination of multiple models could effectively improve the accuracy of pollution source analysis of soil heavy metals. These results provide some scientific basis for further remediation of heavy metal pollution in farmland soil.

Long-term cattle manure addition enhances soil-available phosphorus fractions in subtropical open-field rotated vegetable systems

INTRODUCTION

Evaluation of the changes in phosphorus (P) fractions (various P forms) and their availability at different soil layers is critical for enhancing P resource use efficiency, mitigating subsequent environmental pollution, and establishing a suitable manure application strategy. However, changes in P fractions at different soil layers in response to cattle manure (M), as well as a combined cattle manure and chemical fertilizer application (M+F), remain unclear in open-field vegetable systems. If the amount of annual P input remains the same, identifying which treatment would cause a higher phosphate fertilizer use efficiency (PUE) and vegetable yield while simultaneously reducing the P surplus is especially warranted.

METHODS

Based on a long-term manure experiment that started in 2008, we used a modified P fractionation scheme to analyze P fractions at two soil layers for three treatments (M, M+F, and control without fertilizer application) in an open-field cabbage (Brassica oleracea) and lettuce (Lactuca sativa) system, and assessed the PUE and accumulated P surplus.

RESULTS

The concentrations of the soil P fractions were higher in the 0-20-cm soil layer compared to the 20-40-cm layer, except for organic P (Po) and residual-P. M application significantly increased the inorganic P (Pi) (by 8.92%-72.26%) and the Po content (by 5.01%-61.23%) at the two soil layers. Compared with the control and M+F treatments, M significantly increased residual-P, Resin-P, and NaHCO3-Pi at both soil layers (by 31.9%-32.95%, 68.40%-72.60%, and 48.22%-61.04%), whereas NaOH-Pi and HCl-Pi at 0-20 cm were positively correlated with available P. Soil moderately labile-P was the predominant P component in the two soil layers (accounting for 59%-70%). With the same annual P input amount, M+CF created the highest vegetable yield (117.86 t ha-1), and PUE (37.88%) and M created the highest accumulated P surplus (128.80 kg ha^-1yr^-1).

DISCUSSION

Collectively, a combined manure-chemical fertilizer application has great potential to yield a long-term positive outcome both in terms of vegetable productivity and environmental health in open-field vegetable systems. This highlights the methods' benefits as a sustainable practice in subtropical vegetable systems. Specific attention should be given to a P balance to avoid excessive P input if a rational strategy for manure application is to be attained. This is especially the case for stem vegetables that require manure application and decreases the environmental risk of P loss in vegetable systems.

Effects of nitrogen application on winter wheat growth, water use, and yield under different shallow groundwater depths

Shallow groundwater plays a vital role in physiology morphological attributes, water use, and yield production of winter wheat, but little is known of its interaction with nitrogen (N) application. We aimed to explore the effects of N fertilization rate and shallow groundwater table depth (WTD) on winter wheat growth attributes, yield, and water use. Experiments were carried out in micro-lysimeters at WTD of 0.6, 0.9, 1.2, and 1.5 m with 0, 150, 240, and 300 kg/ha N application levels for the winter wheat (Triticum aestivum L.). The results showed that there was an optimum groundwater table depth (Op-wtd), in which the growth attributes, groundwater consumption (GC), yield, and water use efficiency (WUE) under each N application rate were maximum, and the Op-wtd decreased with the increase in N application. The Op-wtd corresponding to the higher velocity of groundwater consumption (Gv) appeared at the late jointing stage, which was significantly higher than other WTD treatments under the same N fertilization. WTD significantly affected the Gv during the seeding to the regreening stage and maturity stage; the interaction of N application, WTD, and N application was significant from the jointing to the filling stage. The GC, leaf area index (LAI), and yield increased with an increase of N application at 0.6-0.9-m depth-for example, the yield and the WUE of the NF300 treatment with 0.6-m depth were significantly higher than those of the NF150-NF240 treatment at 20.51%, and 14.81%, respectively. At 1.2-1.5-m depth, the N application amount exceeding 150-240 kg/ha was not conducive to wheat growth, groundwater use, grain yield, and WUE. The yield and the WUE of 150-kg/ha treatment were 15.02% and 10.67% higher than those of 240-300-kg/ha treatment at 1.2-m depth significantly. The optimum N application rate corresponding to yield indicated a tendency to decrease with the WTD increase. Considering the winter wheat growth attributes, GC, yield, and WUE, application of 150-240 kg/ha N was recommended in our experiment.

Environment-friendly nitrogen management practices in wetland paddy cultivation

A large amount of nitrogen (N) fertilizer is required for paddy cultivation, but nitrogen use efficiency (NUE) in paddy farming is low (20–40%). Much of the unutilized N potentially degrades the quality of soil, water, and air and disintegrates the functions of different ecosystems. It is a great challenge to increase NUE and sustain rice production to meet the food demand of the growing population. This review attempted to find out promising N management practices that might increase NUE while reducing the trade-off between rice production and environmental pollution. We collected and collated information on N management practices and associated barriers. A set of existing soil, crop, and fertilizer management strategies can be suggested for increasing NUE, which, however, might not be capable to halve N waste by 2030 as stated in the “Colombo Declaration” by the United Nations Environment Program. Therefore, more efficient N management tools are yet to be developed through research and extension. Awareness-raising campaign among farmers is a must against their misunderstanding that higher N fertilizer provides higher yields. The findings might help policymakers to formulate suitable policies regarding eco-friendly N management strategies for wetland paddy cultivation and ensure better utilization of costly N fertilizer.

Short-term transcriptomic analysis at organ scale reveals candidate genes involved in low N responses in NUE-contrasting tomato genotypes

BACKGROUND

Understanding the complex regulatory network underlying plant nitrogen (N) responses associated with high Nitrogen Use Efficiency (NUE) is one of the main challenges for sustainable cropping systems. Nitrate (NO₃ ^-), acting as both an N source and a signal molecule, provokes very fast transcriptome reprogramming, allowing plants to adapt to its availability. These changes are genotype- and tissue-specific; thus, the comparison between contrasting genotypes is crucial to uncovering high NUE mechanisms.

METHODS

Here, we compared, for the first time, the spatio-temporal transcriptome changes in both root and shoot of two NUE contrasting tomato genotypes, Regina Ostuni (high-NUE) and UC82 (low-NUE), in response to short-term (within 24 h) low (LN) and high (HN) NO₃ ^- resupply.

RESULTS

Using time-series transcriptome data (0, 8, and 24 h), we identified 395 and 482 N-responsive genes differentially expressed (DEGs) between RO and UC82 in shoot and root, respectively. Protein kinase signaling plant hormone signal transduction, and phenylpropanoid biosynthesis were the main enriched metabolic pathways in shoot and root, respectively, and were upregulated in RO compared to UC82. Interestingly, several N transporters belonging to NRT and NPF families, such as NRT2.3, NRT2.4, NPF1.2, and NPF8.3, were found differentially expressed between RO and UC82 genotypes, which might explain the contrasting NUE performances. Transcription factors (TFs) belonging to several families, such as ERF, LOB, GLK, NFYB, ARF, Zinc-finger, and MYB, were differentially expressed between genotypes in response to LN. A complementary Weighted Gene Co-expression Network Analysis (WGCNA) allowed the identification of LN-responsive co-expression modules in RO shoot and root. The regulatory network analysis revealed candidate genes that might have key functions in short-term LN regulation. In particular, an asparagine synthetase (ASNS), a CBL-interacting serine/threonine-protein kinase 1 (CIPK1), a cytokinin riboside 5'-monophosphate phosphoribohydrolase (LOG8), a glycosyltransferase (UGT73C4), and an ERF2 were identified in the shoot, while an LRR receptor-like serine/threonine-protein kinase (FEI1) and two TFs NF-YB5 and LOB37 were identified in the root.

DISCUSSION

Our results revealed potential candidate genes that independently and/or concurrently may regulate short-term low-N response, suggesting a key role played by cytokinin and ROS balancing in early LN regulation mechanisms adopted by the N-use efficient genotype RO.

Effect of genotype and environment on agronomical characters of alfalfa (Medicago sativa L.) in a typical acidic soil environment in southwest China

Alfalfa (Medicago sativa L.), an important perennial legume forage crop with high nutritional value and forage yield, is widely used in animal husbandry. However, it is very sensitive to aluminum, which severely limits its growth in acidic soils. In this study, we analyzed the genotype variation of each agronomic trait in 44 alfalfa varieties in two acidic soil environments. Then, analysis of variance (ANOVA) of the variance components was performed using the Residual Maximum Likelihood (REML). The best linear unbiased predictor analysis was used to obtain the mean trait of each variety, and the mean values were used to construct the mean matrix of varieties × traits and interaction analysis of varieties × years. The results showed that there was significant (P &lt; 0.05) genotypic variation for each trait of the 44 varieties and the genetic diversity was abundant. The average repeatability (R value) of interannual plant height (PH), stem thickness (ST), number of branches (NS), fresh weight (FW), total fresh weight (TFW), and total dry weight (TDW) was high (0.21–0.34), whereas the genetics were relatively stable. PH, NS, FW, TFW, and dry weight (DW) were positively correlated (P &lt; 0.01) with TDW. Six alfalfa varieties (Algonquin, Xinjiang daye, Trifecta, Vernal, WL354HQ, and Boja) with excellent TDW and TFW were identified in different years, environmental regions, and climatic altitudes. Our research results can provide suggestions and critical information regarding the future improvement and development of new alfalfa strains and varieties that are resistant to acidic soil conditions.

Dark Side of Ammonium Nitrogen in Paddy Soil with Low Organic Matter: Stimulation of Microbial As(V) Reduction and As(III) Transfer from Soil to Rice Grains

The bioavailability of arsenic (As) is influenced by ammonium (NH₄⁺-N) fertilization, but the underlying mechanisms controlling As transformation in soil-rice systems are still not fully understood. The effects of two NH₄⁺-N fertilizers, urea and NH₄HCO₃, on the transformation of As in a paddy soil with low organic matter content and transfer in rice plants were investigated. Treatments with urea and NH₄HCO₃ significantly increased arsenite (As(III)) concentration in porewater, bioavailable As in rhizosphere soil, and the relative abundance of the As(V) respiratory reductase gene (arrA) and As(III) methyltransferase gene (arsM). Furthermore, the relative expression of As transporter genes in rice roots, such as OsLsi1, OsLsi2, and OsLsi3, was upregulated, and the translocation efficiency of As(III) from rice roots to brown rice was promoted. Subsequently, As(III) accumulation in brown rice significantly increased. Therefore, attention should be paid to As-contaminated paddy fields with NH₄⁺-N fertilization.

Genetic basis controlling rice plant architecture and its modification for breeding

The shoot and root system architectures are fundamental for crop productivity. During the history of artificial selection of domestication and post-domestication breeding, the architecture of rice has significantly changed from its wild ancestor to fulfil requirements in agriculture. We review the recent studies on developmental biology in rice by focusing on components determining rice plant architecture; shoot meristems, leaves, tillers, stems, inflorescences and roots. We also highlight natural variations that affected these structures and were utilized in cultivars. Importantly, many core regulators identified from developmental mutants have been utilized in breeding as weak alleles moderately affecting these architectures. Given a surge of functional genomics and genome editing, the genetic mechanisms underlying the rice plant architecture discussed here will provide a theoretical basis to push breeding further forward not only in rice but also in other crops and their wild relatives.

Overexpression of MYB-like transcription factor SiMYB30 from foxtail millet (Setaria italica L.) confers tolerance to low nitrogen stress in transgenic rice

Nitrogen fertilizers significantly increase crop yield; however, the negative impact of excessive nitrogen use on the environment and soil requires urgent attention. Improving crop nitrogen use efficiency (NUE) is crucial to increase yields and protect the environment. Foxtail millet (Setaria italica L.), a gramineous crop with significant tolerance to barren croplands, is an ideal model crop for studying abiotic stress resistance in gramineous crops. However, knowledge of the regulatory network for NUE in foxtail millet is fragmentary. Herein, we identified an R2R3-like MYB transcription factor in foxtail millet, SiMYB30, which belongs to MYB subfamily 17. The expression of SiMYB30 is responsive to low nitrogen (LN) concentration. Compared with wildtype Kitaake, seedlings of rice lines overexpressing SiMYB30 showed significantly increased shoot fresh and dry weights, plant height, and root area under LN treatment indoors. Consistently, overexpression of SiMYB30 in field experiments significantly increased grain and stem nitrogen contents, grain yield per plant, and stem weight in rice. Furthermore, qRT-PCR revealed that SiMYB30 effectively activated the expression of nitrogen uptake-related genes-OsNRT1, OsNRT1.1B, and OsNPF2.4-and nitrogen assimilation-related genes-OsGOGAT1, OsGOGAT2, and OsNIA2. Notably, SiMYB30 directly bound to the promoter of OsGOGAT2 and regulated its expression. These results highlight the novel and pivotal role of SiMYB30 in improving crop NUE.

Differential responses and mechanistic controls of soil phosphorus transformation in Eucalyptus plantations with N fertilization and introduced N2 -fixing tree species

Introducing N₂ -fixing tree species into Eucalyptus plantations could replace nitrogen (N) fertilization to maintain high levels of N consumption and productivity. However, N enrichment may exacerbate phosphorus (P) limitation as Eucalyptus robusta Smith is extensively planted in P-poor tropical and subtropical soils. We conducted a field experiment in a pure plantation of Eucalyptus urophylla × grandis to investigate the impacts of N fertilization and introduced an N₂ -fixing tree of Dalbergia odorifera T. Chen on soil P transformation. Nitrogen fertilization significantly enhanced soil occluded P pool and reduced the other P pools due to acidification-induced pH-sensitive geochemical processes, lowering Eucalyptus leaf P concentration with higher N : P ratio. By contrast, introduced N₂ -fixing tree species did not change soil pH, labile inorganic P pool, and Eucalyptus leaf N : P ratio, even enhanced organic P pools and reduced occluded P pool probably due to altering microbial community composition particularly stimulating arbuscular mycorrhiza fungal abundance. Our results revealed differential responses and mechanistic controls of soil P transformation in Eucalyptus plantations with N fertilization and introduced N₂ -fixing tree species. The dissolution of occluded P pool along with organic P accumulation observed in the mixed plantations may represent a promising future to better manage soil P availability.

Food Nitrogen Footprint Increased by 35% on the Third Pole During 1998-2018

The N footprint is considered as an indicator of potential environmental damage from N. Quantitative analysis of N footprint distribution, sources and drivers can help mitigate its negative impacts and promote sustainable N management. In this study, we constructed a city-scale food N footprint (FNF) framework for the Qinghai-Tibet Plateau (QTP) using a N mass balance approach. We quantitatively analyzed the FNF during food production and consumption on the QTP from 1998 to 2018. We used the logarithmic mean Divisa index decomposition method to analyze the driving forces of the FNF, and the decoupling of the FNF. The results showed that the per capita FNF of the QTP increased from 24.92 kg N cap-1 in 1998 to 27.70 kg N cap-1 in 2018, and the total FNF increased by 35.11% from 1998 to 2018. The spatial distribution of the FNF was uneven, with N losses from crop production and animal production being the leading contributing source to the FNF (86%). Economic development and urbanization were the main driving forces behind the FNF increase, while N consumption intensity inhibited the growth of the FNF. With the rapid growth of GDP, the FNF in the eastern part of the QTP grew relatively slowly, indicating a gradual decoupling of the FNF from economic development. To reconcile the relationship between socioeconomic drivers and the FNF, it is necessary to focus on coupling relationships between subsystems within the food production and consumption system to promote N recycling.

Signaling pathways underlying nitrogen transport and metabolism in plants

Nitrogen (N) is an essential macronutrient required for plant growth and crop production. However, N in soil is usually insufficient for plant growth. Thus, chemical N fertilizer has been extensively used to increase crop production. Due to negative effects of N rich fertilizer on the environment, improving N usage has been a major issue in the field of plant science to achieve sustainable production of crops. For that reason, many efforts have been made to elucidate how plants regulate N uptake and utilization according to their surrounding habitat over the last 30 years. Here, we provide recent advances focusing on regulation of N uptake, allocation of N by N transporting system, and signaling pathway controlling N responses in plants. [BMB Reports 2023; 56(2): 56-64].

Effects of Partial Replacement of Nitrogen Fertilizer with Organic Fertilizer on Rice Growth, Nitrogen Utilization Efficiency and Soil Properties in the Yangtze River Basin

Cake fertilizer and dairy manure were used as experimental materials to carry out a 9-year (2012–2020) field experiment in the main rice production areas in the Yangtze River basin. Different fertilization modes were used (no fertilization, CK; chemical fertilizer application alone, HY; reduced fertilization with chemical fertilizer application, RF; cake fertilizer replacement of nitrogen fertilizer, CFR; and dairy manure replacement of nitrogen fertilizer, DMR). Changes in the total rice yield, yield components, absorption of nitrogen, soil pH, organic matter, total nitrogen, and soil bulk density under different fertilization treatments were analyzed. The results show that organic fertilizer replacement leads to a stable and high rice yield. The 9-year average rice yields of the CFR and DMR treatments were 60.0% and 61.5% higher than that of CK. The nitrogen uptake of the CFR and DMR treatments was also higher than that of the other treatments. The nitrogen recovery efficiency in the current season could be increased by 16.37–22.89%, and after 9 years of testing, the soil total nitrogen contents of CFR and DMR increased by 0.23–0.85 g·kg−1 compared to the other treatments. The available P and K contents of DMR increased by 30.17 mg·kg−1 and 22.02 mg·kg−1 compared with HY, respectively. The soil bulk density was reduced by 0.08 g·cm−3. Generally, the effects of dairy manure replacement were better than those of cake fertilizer. This is an important method that can be used to fertilize the soil and foster sustainable soil utilization in the rice-growing area of the Yangtze River Basin, as a long-term partial replacement for chemical nitrogen fertilizer.

Seed coating with micronutrients improves germination, growth, yield and microelement nutrients of maize (Zea mays L.)

Soil and foliar application are the most widely used methods for adding micronutrients to maize. High quality micronutrient fertilizers, however, are difficult to obtain in developing countries; micronutrient seed coatings are an attractive and practical alternative. We applied this approach to maize (Zea mays L.) to demonstrate the effects of boron (B), iron (Fe), manganese (Mn), molybdenum (Mo) and zinc (Zn) sulfates on maize germination, vigor, seedling growth, seed yield and seed quality as well as on seed microelement concentration. Seed coating was tested on three representative Chinese soil types (sandy, purple and lime soils). Compared to untreated controls, coating maize seeds with micronutrients significantly increased the seed emergence rate, seedling height, leaf length, leaf width, leaf area, main root length, root number, above ground fresh biomass, above ground dry biomass, underground fresh biomass, underground dry biomass, ear thickness and yield in sandy, purple and lime soils. Coating maize seeds with micronutrients also significantly increased the yield and quality of maize seed compared to untreated controls including ear barren tip, ear length, ear thickness, grains/row, hundred seed weigh, and rows/ear. Also, B, Zn, Fe, Mn and Mo microelements accumulated in maize seed after coating the seed with micronutrients. Our findings indicate that micronutrient seed coating may improve nutrient uptake and production of maize hybrids.

Habitats generated by the restoration of coal mining subsidence land differentially alter the content and composition of soil organic carbon

The content and composition of soil organic carbon (SOC) can characterize soil carbon storage capacity, which varies significantly between habitats. Ecological restoration in coal mining subsidence land forms a variety of habitats, which are ideal to study the effects of habitats on SOC storage capacity. Based on the analysis of the content and composition of SOC in three habitats (farmland, wetland and lakeside grassland) generated by different restoration time of the farmland which was destroyed by coal mining subsidence, we found that farmland had the highest SOC storage capacity among the three habitats. Both dissolved organic carbon (DOC) and heavy fraction organic carbon (HFOC) exhibited higher concentrations in the farmland (20.29 mg/kg, 6.96 mg/g) than in the wetland (19.62 mg/kg, 2.47 mg/g) or lakeside grassland (5.68 mg/kg, 2.31 mg/g), and the concentrations increased significantly over time, owing to the higher content of nitrogen in the farmland. The wetland and lakeside grassland needed more time than the farmland to recover the SOC storage capacity. The findings illustrate that the SOC storage capacity of farmland destroyed by coal mining subsidence could be restored through ecological restoration and indicate that the recovery rate depends on the reconstructed habitat types, among which farmland shows great advantages mainly due to the nitrogen addition.

Coordinative Management of Soil Resources and Agricultural Farmland Environment for Food Security and Sustainable Development in China

Major problems in China's pursuit of sustainable agricultural development include inadequate, low-quality soil and water resources, imbalanced regional allocation and unreasonable utilization of resources. In some regions, overexploitation of soil resources and excessive use of chemicals triggered a web of unforeseen consequences, including insufficient use of agricultural resources, agricultural non-point source pollution and land degradation. In the past decade, China has changed its path of agricultural development from an output-oriented one to a modern, sustainable one with agricultural ecological civilization as its goal. First, the government has formulated and improved its laws and regulations on soil resources and the environment. Second, the government has conducted serious actions to ensure food safety and coordinated management of agricultural resources. Third, the government has planned to establish national agricultural high-tech industry demonstration zones based on regional features to strengthen the connection among the government, agri-businesses, scientific community and the farming community. As the next step, the government should improve the system for ecological and environmental regulation and set up a feasible eco-incentive mechanism. At the same time, the scientific community should strengthen the innovation of bottleneck technologies and the development of whole solutions for sustainable management in ecologically fragile regions. This will enhance the alignment between policy mechanisms and technology modes and effectively promote the sustainable development of agriculture in China.

Effect of phosphate on cadmium immobilized by microbial-induced carbonate precipitation: Mobilization or immobilization?

Microbial-induced carbonate precipitation (MICP) is a promising technology to immobilize/remediate heavy metals (HMs) like cadmium (Cd). However, the long-term stability of MICP-immobilized HMs is unclear, especially in farmland where chemical fertilization is necessary. Therefore, we performed MICP treatment on soils contaminated with various Cd compounds (CdCO₃, CdS, and CdCl₂) and added diammonium phosphate (DAP) to explore the impact of phosphate on the MICP-immobilized Cd. The results showed that MICP treatment was practical to immobilize the exchangeable Cd but to mobilize the carbonate and Fe/Mn oxide-bound Cd. After applying DAP, soil pH declined due to ammonium nitrification. At high P/Ca molar ratios (1/2 and 1), partial previously immobilized Cd was released due to the carbonate dissolution. Contrarily, exchangeable Cd transformed to less mobilizable Fe/Mn oxide-bound at low P/Ca molar ratios (1/4 and 1/8). Meanwhile, other treatments were also helpful in avoiding the release of immobilized Cd, such as applying non-ammonium phosphate and adding lime material after soil acidification. Our investigation suggested that the long-term stability of HMs in remediated sites should be carefully evaluated, especially in agricultural areas with phosphate and nitrogen fertilizer input.

Effects of Nitrogen Input on Community Structure of the Denitrifying Bacteria with Nitrous Oxide Reductase Gene (nosZ I): a Long-Term Pond Experiment

Excessive nitrogen (N) input is an important factor influencing aquatic ecosystems and has received increasing public attention in the past decades. It remains unclear how N input affects the denitrifying bacterial communities that play a key role in regulating N cycles in various ecosystems. To test our hypothesis-that the abundance and biodiversity of denitrifying bacterial communities decrease with increasing N-we compared the abundance and composition of denitrifying bacteria having nitrous oxide reductase gene (nosZ I) from sediments (0-20 cm) in five experimental ponds with different nitrogen fertilization treatment (TN10, TN20, TN30, TN40, TN50) using quantitative PCR and pyrosequencing techniques. We found that (1) N addition significantly decreased nosZ I gene abundance, (2) the Invsimpson and Shannon indices (reflecting biodiversity) first increased significantly along with the increasing N loading in TN10-TN40 followed by a decrease in TN50, (3) the beta diversity of the nosZ I denitrifier was clustered into three groups along the TN concentration levels: Cluster I (TN50), Cluster II (TN40), and Cluster III (TN10-TN30), (4) the proportions of Alphaproteobacteria and Betaproteobacteria in the high-N treatment (TN50) were significantly lower than in the lower N treatments (TN10-TN30). (5) The TN concentration was the most important factor driving the alteration of denitrifying bacteria assemblages. Our findings shed new light on the response of denitrification-related bacteria to long-term N loading at pond scale and on the response of denitrifying microorganisms to N pollution.

The important role of surface hydroxyl groups in aluminum activation during phyllosilicate mineral acidification

Phyllosilicate minerals are the important components in soils and an important source of activated aluminum (Al) during soil acidification. However, the mechanisms for Al activation in phyllosilicate minerals were not understood well. In this paper, the effect of phyllosilicate surface hydroxyl groups on Al activation during acidification was studied after the minerals were modified with inorganic and organic materials. After modification of kaolinite, montmorillonite, and illite with fulvic acid (FA-), iron oxide (Fe-), Fe combined with FA (Fe-FA-), and siloxane (Si-O-), the interlayer spaces were altered. For instance, when modified with Fe, Fe entered the interlayer spaces of kaolinite and montmorillonite and changed the interlayer spaces of both minerals but did not affect that of illite. Also, the other modification methods had significant effects on the interlayer space of montmorillonite but not on kaolinite and illite. It was observed that all the modification strategies inhibited Al activation during acidification by reducing the number of hydroxyl groups on the mineral surfaces and inhibiting protonation reactions between H⁺ and hydroxyl groups. Nevertheless, the inhibition effect varies with the type of phyllosilicate mineral. For kaolinite (Kao), the inhibition effect of the different modification methods on Al activation during acidification followed: Fe-FA-Kao > Fe-Kao > Si-O-Kao > FA-Kao. Additionally, for montmorillonite (Mon), the inhibition effect was in the order: Si-O-Mon > Fe-Mon > Fe-FA-Mon > FA-Mon, while for illite, it was: Fe-illite > Si-O-illite ≈ Fe-FA-illite > FA-illite. Thus, the hydroxyl groups on the surfaces and edges of phyllosilicate minerals play an important role in the activation of Al from the mineral structure. Also, the protonation of hydroxyl groups may be the first step during Al activation in these minerals. The results of this study can serve as a reference for the development of new technologies to inhibit soil acidification and Al activation.

Sodium hydrosulfide alleviates aluminum toxicity in Brassica napus through maintaining H2S, ROS homeostasis and enhancing aluminum exclusion

Hydrogen sulfide (H₂S) is a gaseous mediator that plays versatile roles in plant growth and stress responses. However, the regulatory functions of H₂S in plant responses to aluminum (Al) stress remain elusive. We observed that application of 20 μM of NaHS (H₂S donor) or 0.2 mM of hypotaurine (HT, H₂S scavenger) significantly mitigated the inhibition of rapeseed root growth caused by Al stress (150 μM). Exposure to Al for 6 h induced significant H₂S accumulation and high levels were maintained thereafter, owing to the elevation of cysteine (83.73 %), L-cysteine desulfhydrase (LCD, 92.32 %), and cyanoalanine synthase (CAS, 11.23 %), and the inhibition of O-Acetyl-l-serine (thiol) lyase (OAS-TL, 15.13 %). Addition of HT significantly scavenged the prolonged H₂S accumulation caused by Al stress. Exogenous NaHS maintained the H₂S homeostasis through increasing OAS-TL activity (34.99 %) and inhibiting LCD activity (25.72 %), and cysteine level (39.53 %). Moreover, exogenous NaHS mitigated oxidative damage by enhancing antioxidant enzyme activity (SOD 26.27 %, POD 28.62 %, CAT 400.5 % and APX 92.68 %) and proline content (19.85 %). It also decreased root cell wall Al accumulation (20.52 %) by decreasing PME activity (24.64 %) and facilitating pectin methylation (16.74 %). Similar alleviative effects were observed when HT was added. These results suggest that H₂S functions differential roles in Al stress response in rapeseed seedlings, depending on its local concentration and duration. Prolonged high H₂S emissions might contribute to Al toxicity, while moderate exogenous H₂S improves Al tolerance through controlling H₂S and ROS accumulation and enhancing Al exclusion through replenishing antioxidant reservoirs and facilitating pectin methylation. It is therefore important that further study investigates how to orchestrate endogenous H₂S levels and improve plant stress tolerance.

Cooperative interactions between nitrogen fixation and phosphorus nutrition in legumes

Legumes such as soybean are considered important crops as they provide proteins and oils for humans and livestock around the world. Different from other crops, leguminous crops accumulate nitrogen (N) for plant growth through symbiotic nitrogen fixation (SNF) in coordination with rhizobia. A number of studies have shown that efficient SNF requires the cooperation of other nutrients, especially phosphorus (P), a nutrient deficient in most soils. During the last decades, great progress has been made in understanding the molecular mechanisms underlying the interactions between SNF and P nutrition, specifically through the identification of transporters involved in P transport to nodules and bacteroids, signal transduction, and regulation of P homeostasis in nodules. These studies revealed a distinct N-P interaction in leguminous crops, which is characterized by specific signaling cross talk between P and SNF. This review aimed to present an updated picture of the cross talk between N fixation and P nutrition in legumes, focusing on soybean as a model crop, and Medicago truncatula and Lotus japonicus as model plants. We also discuss the possibilities for enhancing SNF through improving P nutrition, which are important for high and sustainable production of leguminous crops.

A review of the factors affecting the emission of the ozone chemical precursors VOCs and NOx from the soil

The soil environment is one of the main places for the generation, emission, and absorption of various atmospheric pollutants, including nitrogen oxides (NO_x) and volatile organic compounds (VOCs), which are the main chemical precursors for the formation of ground-level ozone. Ground-level ozone pollution has become a concerning environmental problem because of the harm it poses to human health and the surrounding ecological environment. However, current studies on chemical precursors of ozone mainly focus on emissions from industrial sources, forest vegetation, and urban vehicle exhaust; by contrast, few studies have examined the role of the soil environment on NO_x and VOCs emissions. In addition, the soil environment is complex and heterogeneous. Agricultural activities (fertilization) and atmospheric deposition provide nutrients for the soil environment, with a significant effect on NO_x and VOCs emissions. There is thus a need to study the environmental factors related to the release of NO_x and VOCs in the soil to enhance our understanding of emission fluxes and the types of NO_x and VOCs in the soil environment and aid efforts to control ground-level ozone pollution through appropriate measures such as management of agricultural activities. This paper reviews the generation of NO_x and VOCs in the soil environment and the effects of various environmental factors on this process. Some suggestions are provided for future research on the regulation of NO_x and VOCs emissions in the soil environment and the ability of the soil environment to contribute to ground-level ozone pollution.

Late Split-Application with Reduced Nitrogen Fertilizer Increases Yield by Mediating Source-Sink Relations during the Grain Filling Stage in Summer Maize

In the North China Plain, the excessive application of nitrogen (N) fertilizer for ensuring high yield and a single application at sowing for simplifying management in farmer practice lead to low N use efficiency and environmental risk in maize (Zea mays L.) production. However, it is unclear whether and how late split application with a lower level of N fertilizer influences maize yield. To address this question, a two-year field experiment was conducted with two commercial maize cultivars (Zhengdan 958 and Denghai 605) using a lower level of N input (180 kg ha^-1) by setting up single application at sowing and split application at sowing and later stages (V12, R1, and R2) with four different ratios, respectively. The maize yield with split-applied 180 kg ha^-1 N did not decrease compared to the average yield with 240 kg ha^-1 N input in farmer practice, while it increased by 6.7% to 11.5% in the four N split-application treatments compared with that of the single-application control. Morphological and physiological analyses demonstrated that late split application of N (i) increased the net photosynthetic rate and chlorophyll content and thus promoted the photosynthetic efficiency during the reproductive stages; (ii) promoted the sink capacity via improved kernel number, endosperm cells division, and grain-filling rate; and (iii) increased the final N content and N efficiency in the plant. Therefore, we propose that late split application of N could reduce N fertilizer input and coordinately improve N efficiency and grain yield in summer maize production, which are likely achieved by optimizing the source-sink relations during the grain-filling stage.

H+-pyrophosphatases enhance low nitrogen stress tolerance in transgenic Arabidopsis and wheat by interacting with a receptor-like protein kinase

INTRODUCTION

Nitrogen is a major abiotic stress that affects plant productivity. Previous studies have shown that plant H+-pyrophosphatases (H+-PPases) enhance plant resistance to low nitrogen stress. However, the molecular mechanism underlying H+-PPase-mediated regulation of plant responses to low nitrogen stress is still unknown. In this study, we aimed to investigate the regulatory mechanism of AtAVP1 in response to low nitrogen stress.

METHODS AND RESULTS

AtAVP1 in Arabidopsis thaliana and EdVP1 in Elymus dahuricus belong to the H+-PPase gene family. In this study, we found that AtAVP1 overexpression was more tolerant to low nitrogen stress than was wild type (WT), whereas the avp1-1 mutant was less tolerant to low nitrogen stress than WT. Plant height, root length, aboveground fresh and dry weights, and underground fresh and dry weights of EdVP1 overexpression wheat were considerably higher than those of SHI366 under low nitrogen treatment during the seedling stage. Two consecutive years of low nitrogen tolerance experiments in the field showed that grain yield and number of grains per spike of EdVP1 overexpression wheat were increased compared to those in SHI366, which indicated that EdVP1 conferred low nitrogen stress tolerance in the field. Furthermore, we screened interaction proteins in Arabidopsis; subcellular localization analysis demonstrated that AtAVP1 and Arabidopsis thaliana receptor-like protein kinase (AtRLK) were located on the plasma membrane. Yeast two-hybrid and luciferase complementary imaging assays showed that the AtRLK interacted with AtAVP1. Under low nitrogen stress, the Arabidopsis mutants rlk and avp1-1 had the same phenotypes.

DISCUSSION

These results indicate that AtAVP1 regulates low nitrogen stress responses by interacting with AtRLK, which provides a novel insight into the regulatory pathway related to H+-pyrophosphatase function in plants.

Integrated metabolomic and transcriptomic study unveils the gene regulatory mechanisms of sugarcane growth promotion during interaction with an endophytic nitrogen-fixing bacteria

BACKGROUND

Sugarcane growth and yield are complex biological processes influenced by endophytic nitrogen-fixing bacteria, for which the molecular mechanisms involved are largely unknown. In this study, integrated metabolomic and RNA-seq were conducted to investigate the interaction between an endophytic bacterial strain, Burkholderia GXS16, and sugarcane tissue culture seedlings.

RESULTS

During treatment, the colonization of GXS16 in sugarcane roots were determined, along with the enhanced activities of various antioxidant enzymes. Accordingly, 161, 113, and 37 differentially accumulated metabolites (DAMs) were found in the pairwise comparisons of adjacent stages. In addition, transcriptomic analyses obtained 1,371 (IN-vs-CN), 1,457 (KN-vs-IN), and 365 (LN-vs-KN) differentially expressed genes (DEGs), which were mainly involved in the pathways of glutathione metabolism and carbon metabolism. We then assessed the pattern of metabolite accumulation and gene expression in sugarcane during GXS16 colonization. The results showed that both DAMs and DGEs in the upregulated expression profiles were involved in the flavonoid biosynthesis pathway. Overall, p-coumaroyl-CoA in sugarcane roots transferred into homoeriodictyol chalcone and 5-deoxyleucopelargonidin due to the upregulation of the expression of genes shikimate O-hydroxycinnamoyltransferase (HCT), chalcone synthase (CHS), and phlorizin synthase (PGT1).

CONCLUSIONS

This study provides insights into the gene regulatory mechanisms involved in the interaction between GXS16 and sugarcane roots, which will facilitate future applications of endophytic nitrogen-fixing bacteria to promote crop growth.

Environmental Stimuli: A Major Challenge during Grain Filling in Cereals

Light, temperature, water, and fertilizer are arguably the most important environmental factors regulating crop growth and productivity. Environmental stimuli, including low light, extreme temperatures, and water stresses caused by climate change, affect crop growth and production and pose a growing threat to sustainable agriculture. Furthermore, soil salinity is another major environmental constraint affecting crop growth and threatening global food security. The grain filling stage is the final stage of growth and is also the most important stage in cereals, directly determining the grain weight and final yield. However, the grain filling process is extremely vulnerable to different environmental stimuli, especially for inferior spikelets. Given the importance of grain filling in cereals and the deterioration of environmental problems, understanding environmental stimuli and their effects on grain filling constitutes a major focus of crop research. In recent years, significant advances made in this field have led to a good description of the intricate mechanisms by which different environmental stimuli regulate grain filling, as well as approaches to adapt cereals to changing climate conditions and to give them better grain filling. In this review, the current environmental stimuli, their dose-response effect on grain filling, and the physiological and molecular mechanisms involved are discussed. Furthermore, what we can do to help cereal crops adapt to environmental stimuli is elaborated. Overall, we call for future research to delve deeper into the gene function-related research and the commercialization of gene-edited crops. Meanwhile, smart agriculture is the development trend of the future agriculture under environmental stimuli.

Nitrogen supply affects ion homeostasis by modifying root Casparian strip formation through the miR528-LAC3 module in maize

Although nitrogen (N) is known to affect mineral element homeostasis in plants, the molecular mechanisms of interactions between N and other nutrients remain largely unclear. We report here that N supply affects ion homeostasis in maize. Berberine hemisulfate staining and a propidium iodide penetration assay showed that N luxury significantly delayed Casparian strip (CS) formation in maize roots. We further demonstrated that N-mediated CS formation in maize was independent of RBOHF-activated H₂O₂ production. N luxury induced the expression of ZmmiR528 in whole roots and root tips. Knockdown and loss-of-function of ZmmiR528 promoted CS formation under both N-luxury and N-deficient conditions. Both ZmMIR528a and ZmMIR528b contribute to early CS formation under different N conditions. RNA-seq and real-time RT-PCR analysis demonstrated that ZmLAC3, but not ZmLAC5, responded to N treatments. Consistent with results obtained with ZmmiR528 TM transgenic maize and mir528a/b loss-of-function mutants, transgenic maize overexpressing ZmLAC3 displayed early CS formation under different N conditions. Under field conditions, K, Ca, Mn, Cu, Mg, and Zn concentrations were greater in the ear leaf of ZmLAC3-overexpressing transgenic maize than in the wild type. These results indicate that ZmmiR528 affects CS formation in maize by regulating the expression of ZmLAC3, and modification of CS formation has the potential to improve maize quality.

Nitrogen fertilization modulates rice seed endophytic microbiomes and grain quality

The intensive use of chemical fertilizer, particularly nitrogen (N) has resulted in not only markedly increased crop yields but also detrimental effects on ecosystems. Plant microbiomes represent an eco-friendly alternative for plant nutrition and productivity, and the effect of N fertilization on plant and soil microbes has been well studied. However, if and how N fertilization modulates seed endophytic microbiomes and grain quality remains largely unknown. Here, we investigated the effect of different N fertilization rates on rice seed endophytic bacterial and fungal communities as well as on grain quality. Higher bacterial and fungal community diversity and richness, but lower grain protein and amino acid contents were found in seeds of rice treated moderate N fertilization than those treated insufficient or excessive N input. There were also more complex co-occurrence networks, and an enrichment of putative beneficial bacterial taxa in seeds under moderate N application, while there was an opposite trend under the excessive N treatment. In addition, the grain amylose and amylopectin contents were positively correlated with the relative abundance of bacterial and fungal dominant genera, while the grain amino acid contents were negatively correlated with the bacterial dominant genera but positively associated with fungal dominant genera. Together, we demonstrate that moderate N fertilization can enhance bacterial and fungal community colonization in seeds and improve grain eating and cooking qualities. This study extends our knowledge regarding the significant role of rational fertilization on seed-microbe interactions in sustainable agriculture.

Soil microbial community structure dynamics shape the rhizosphere priming effect patterns in the paddy soil

Microbial community structure plays a crucial part in soil organic carbon (SOC) decomposition and variation of rhizosphere priming effects (RPEs) during plant growth. However, it is still uncertain how bacterial community structure regulates RPEs in soil and how RPE patterns respond to plant growth. Therefore, we conducted an experiment to examine the RPE response to plant growth and nitrogen (N) addition (0 (N0), 150 (N150), and 300 (N300) kg N ha^-1) using the ¹³C natural abundance method in a C₃ soil (paddy soil) - C₄ plant (maize, Zea mays L.) system; we then explored the underlying biotic mechanisms using 16S rRNA sequencing techniques. Networks were constructed to identify keystone taxa and to analyze the correlations between network functional modules of bacterial community and C decomposition. The results indicated that negative and positive RPEs occurred on Day 30 and Day 75 after maize planting, respectively. Bacterial community structure significantly changed and tended to shift from r-strategists toward K-strategists with changing labile C: N stoichiometry and soil pH during plant growth stages. The different network modules of bacterial community were aggregated in response to RPE pattern variation. Caulobacteraceae, Bacillus, and Chitinophagaceae were keystone taxa on Day 30, while Gemmatimonas, Candidatus Koribacter, and Xanthobacteraceae were keystone taxa on Day 75. Moreover, keystone taxa with different C utilization strategies were significantly different between the two growth stages and related closely to different RPE patterns. This study provides deeper insights into the network structure of bacterial communities corresponding to RPE patterns and emphasizes the significance of keystone taxa in RPE variation.

Soil organic carbon content increase in the east and south of China is accompanied by soil acidification

Increased soil organic carbon (OC) in China has been reported in the past two decades, suggesting the sequestration of atmospheric carbon dioxide into soil, mitigating climate change and improving soil health. On the other hand, soil pH decrease had also been reported nationwide. If the two are related, the strategy of increasing soil OC could negatively affect soil quality for food production and the environment. We investigate this thread based on large-scale soil survey data from two provinces with typical soil and cropping patterns in the east and south of China, Jiangsu (102,600 km²) and Guangdong (177,900 km²). The data include >5000 observations from soil surveys conducted over the past four decades, i.e., the 1980s, 2006-2007, and 2010-2011. Using spatiotemporal modelling, we show that across Jiangsu province, the topsoil OC on average has increased from 8.5 g kg^-1 to 9.9 g kg^-1 from 1980 to 2000 and a further increase to 12.6 g kg^-1 in 2010. This increase was accompanied by a decrease in average pH from 7.63 to 6.90. In Guangdong, there was an overall increase in average topsoil OC content from 14.2 g kg^-1, 16.5 g kg^-1, and 20.2 g kg^-1 with a decrease in average pH from 5.58, 4.90, and 4.98. Based on the spatiotemporal modelling results, the structural equation modelling analysis shows that OC and pH changes were significantly correlated and linked by increased soil N content. On croplands, soil N content was mainly attributed to N fertiliser application. The pH decrease was particularly significant in the east of China where the soils were neutral in pH. We recommend that more revolutionary means be taken to sequestrate atmospheric carbon into soil as the current OC increase due to increasing crop productivity via a high rate of nitrogen application may have a potential acidification effect.

Environmental effects of rural e-commerce: A case study of chemical fertilizer reduction in China

The economic effects of rural e-commerce have been fully discussed by scholars, but few studies focus on the environmental effects of rural e-commerce. This study takes the reduced application of chemical fertilizer in China as an example. On the basis of constructing the corresponding theoretical framework, we take the promotion of Rural E-Commerce Demonstration County (REDC) policy as a quasi-natural experiment, using the county panel data from 2000 to 2020 and the multi-period difference-in-difference method to excavate the influence of rural e-commerce on the fertilizer reduction. Our results show that REDC policy reduces the amount of chemical fertilizer applied in the county by 21%, which is unexpected. Our findings passed a series of robustness tests, including dealing with selective bias, eliminating other policy interference in the same period and placebo test. Based on the heterogeneity analysis of grain production and marketing regions and informatization level, it is found that the effect of fertilizer reduction by rural e-commerce is more impressive in the major grain production areas and counties with low informatization level. According to the theoretical framework, we use the mediating effect model to verify the transmission mechanism of marginal income improvement, mechanization and labor transfer. Therefore, we believe that policy designers can use e-commerce to promote farmers to adopt the production strategies of reducing fertilizer application. The findings and recommendations of this study may be relevant to other countries with free trading markets and e-commerce platforms.

Dual tolerance of ageratum (Ageratum conyzoides L.) to combined pollution of acid and cadmium: Field survey and pot experiment

A field survey and pot experiment were carried out to screen tolerant plants growing in cadmium (Cd)-polluted mining areas which were co-polluted with acid in soil, and the related physiological and biochemical mechanisms were also analyzed. Thirty-seven species of wild plants and their corresponding soil were collected from a farmland around the mining areas. Ageratum (Ageratum conyzoides L.) with strong Cd-accumulative ability was selected, and its tolerance experiment for acid and Cd with different levels were carried out separately or orthogonally, respectively. Furthermore, the activities of superoxide dismutase (SOD), peroxidase (POD) and catalase (CAT), and the contents of malondialdehyde (MDA), photosynthetic pigments, soluble sugar and proline in its leaves were determined. The results showed that the Cd accumulation in ageratum and sticktight (Bidens pilosa L.) was relatively high, but the latter has been well documented, so we focused on ageratum in the present work. In pot experiment, ageratum grew normally at 100 mg kg^-1 Cd in soil, and the Cd concentrations in its roots, stems and leaves were 75.37 ± 7.37, 31.01 ± 3.76 and 53.92 ± 10.05 mg kg^-1, respectively. In the case of acid tolerance experiment, all plant individuals of ageratum grew normally when soil pH was over 3.5. In the orthogonal experiment, the Cd accumulation in this plant increased with the decrease of soil pH under the same Cd treatment. Under strong acid conditions, the activity of SOD in leaves of ageratum was increased significantly. When the Cd concentration was 10 mg kg^-1 and the soil pH was 5.5 or 3.5, the activities of POD and CAT were significantly increased. In addition, based on stepwise regression analysis, the leaf Cd concentration was significantly positive correlated with the activities of SOD and POD in leaves of ageratum. Therefore, ageratum not only had a strong tolerance for Cd and acid pollution in soil, but also had a strong ability to accumulate Cd. As a common plant in the mining area, it has a great potential for the phytoremediation of Cd and acid co-contaminated soil.

Physiological and molecular insights into the resilience of biological nitrogen fixation to applied nitrogen in Saccharum spontaneum, wild progenitor of sugarcane

Excessive use of nitrogen (N) fertilizer for sugarcane cultivation is a significant cause of greenhouse gas emission. N use-efficiency (NUE) of sugarcane is relatively low, and considerable effort is now directed to exploit biological nitrogen fixation (BNF) in sugarcane. We hypothesize that genetic base-broadening of sugarcane using high-BNF Saccharum spontaneum, a wild progenitor of sugarcane, will help develop N-efficient varieties. We found remarkable genetic variation for BNF and growth in S. spontaneum accessions, and BNF in some accessions remained highly resilient to inorganic N application. Physiological and molecular analyses of two S. spontaneum accessions with high-BNF capacity and growth, namely G152 and G3, grown under N replete and low N conditions showed considerable similarity for total N, NH₄-N, soluble sugar, indoleacetic acid, gibberellic acid, zeatin and abscisic acid content; yet, they were strikingly different at molecular level. Global gene expression analysis of G152 and G3 grown under contrasting N supply showed genotype effect explaining much of the gene expression variation observed. Differential gene expression analysis found an over-representation of carbohydrate and amino acid metabolism and transmembrane transport genes in G152 and an enrichment of lipid metabolism and single-organism processes genes in G3, suggesting that distinctly divergent metabolic strategies are driving N-related processes in these accessions. This was attested by the remarkable variation in carbon, N, amino acid and hormone metabolism-related gene expression in G152 and G3 under high- and low-N supply. We conclude that both accessions may be achieving similar BNF and growth phenotypes through overlapping but distinctly different biochemical and molecular mechanisms.

Sources, transfers and the fate of heavy metals in soil-wheat systems: The case of lead (Pb)/zinc (Zn) smelting region

Heavy metals (HMs) from smelters pose severe challenges to the environmental soil quality of surrounding farmlands, and threaten human health through the food chain. This study explored the environmental effects of smelting activities on farmland soil, and additionally assessed the enrichment, transfer and health risk of HMs in soil-wheat systems. Multiple characterization results were combined to demonstrate that HMs from smelter waste were transferred to the surrounding soil. It was determined that the enrichment of HMs in soil-wheat systems is mainly controlled by the total HM concentration and pH in soil. Furthermore, the priority pollutant in soil-wheat systems was found to be Cd, and Cd affected the transfer of Cu, Mn and Pb from soil to wheat roots. Interestingly, the -OH stretching, C-H stretching, N-H amide and C-O bending were involved in detoxifying HMs in wheat. The mean values of non-carcinogenic and carcinogenic risks by consuming wheat grain were 9.1, 1.4E-02 (adults) and 11.3, 3.3E-03 (children), respectively, indicating a noteworthy health risk. This study highlighted the critical issues arising from Pb/Zn smelting activities on agricultural soils. Notwithstanding, to ensure food security, the affected regions could opt to follow up on the type of crops grown.

Source oxygen contributions of primary nitrate emitted from biomass burning

Atmospheric nitrate (NO3-) produced by photochemical oxidation in the atmosphere has high oxygen isotope ratios (δ18O values). Recently, the primary NO3- emitted from combustion sources was found to have much lower δ18O values. However, it is unclear how and to what extents the low δ18O signatures were controlled by major O sources during the primary NO3- formation of combustion processes. Here, we first measured concentrations and δ18O values of NO3- from burning five biomass materials (bb-NO3- and δ18Obb-NO3-, respectively) in China. Distinctly higher concentration levels of the bb-NO3- emissions (42.1 ± 8.1 μmol m-3) than ambient NO3- suggest it is a potential source of atmospheric NO3- pollution. Much lower δ18Obb-NO3- signatures (27.6 ± 2.7 ‰) than ambient NO3- support it as a primary emission source with different O sources and formation mechanism from secondary NO3-. Isotope mass-balance modeling revealed that atmospheric O2 and the biomass O dominated the O of bb-NO3- (53 ± 7 % and 40 ± 4 %, respectively) over the aqueous vapor (7 ± 3 %). Besides, we found increasing δ18Obb-NO3- values with the biomass N contents and relatively lower δ18Obb-NO3- values for biomasses with higher carbon (C) and lower O contents, indicating that biomass C, N, and O contents may influence the source O contributions of the bb-NO3-. This work provides a novel isotope analysis on the O source contribution of the bb-NO3-, which is useful for understanding the formation mechanism of combustion-related NO3- sources and evaluating the primary NO3- emissions.

Organic carbon sequestration in Chinese croplands under compost application and its contribution to carbon neutrality

Achieving the carbon neutrality in China has great impact on alleviating global warming. Compost application, an important measure to promote soil organic carbon (SOC) sequestration, has been practiced in China since 2015. However, it is still unclear how much carbon can be fixed by cropland soil under compost application in the whole China. China has pledged to strive for the goal of carbon neutrality by 2060, which brought two issues: whether compost application can consistently promote SOC sequestration until 2060, and how much contribution it can make to the carbon neutrality. In the present study, we analyzed the results from 93 literatures to determine the SOC sequestration under compost application in the different agricultural divisions of China. Results showed that there were regional differences in the effect of compost application on SOC sequestration. The annual SOC sequestration in Northern China (NC) and Gansu + Xinjiang (GX) was significantly high than other regions. In addition, the annual SOC sequestration was negatively related to the duration of the experiment, while the accumulative SOC sequestration during the experimental period increased with the increase of the duration. According to our results, the total SOC sequestration in topsoil of Chinese cropland was 85 Tg C year^-1 under compost application, which will make a 4.4% contribution to carbon neutrality during 2021-2060. In conclusion, cropland soil in China can still sequester carbon for more than 35 years under compost application. Thus, abidingly promoting compost application in China is crucial to accomplishing the carbon neutrality goal.

Genome-wide identification and analyses of cotton high-affinity nitrate transporter 2 family genes and their responses to stress

Nitrate transporters (NRTs) are crucial for the uptake, use, and storage of nitrogen by plants. In this study, 42 members of the GhNRT2 (Nitrate Transporter 2 family) were found in the four different cotton species. The conserved domains, phylogenetic relationships, physicochemical properties, subcellular localization, conserved motifs, gene structure, cis-acting elements, and promoter region expression patterns of these 42 members were analyzed. The findings confirmed that members of the NRT2 family behaved typically, and subcellular localization tests confirmed that they were hydrophobic proteins that were mostly located on the cytoplasmic membrane. The NRT2 family of genes with A.thaliana and rice underwent phylogenetic analysis, and the results revealed that GhNRT2 could be divided into three groups. The same taxa also shared similar gene structure and motif distribution. The composition of cis-acting elements suggests that most of the expression of GhNRT2 may be related to plant hormones, abiotic stress, and photoreactions. The GhNRT2 gene was highly expressed, mainly in roots. Drought, salt, and extreme temperature stress showed that GhNRT2 gene expression was significantly up-regulated or down-regulated, indicating that it may be involved in the stress response of cotton. In general, the genes of the NRT2 family of cotton were comprehensively analyzed, and their potential nitrogen uptake and utilization functions in cotton were preliminarily predicted. Additionally, we provide an experimental basis for the adverse stress conditions in which they may function.

Bio-organic fertilizers improve Dendrocalamus farinosus growth by remolding the soil microbiome and metabolome

Organic and microbial fertilizers have potential advantages over inorganic fertilizers in improving soil fertility and crop yield without harmful side-effects. However, the effects of these bio-organic fertilizers on the soil microbiome and metabolome remain largely unknown, especially in the context of bamboo cultivation. In this study, we cultivated Dendrocalamus farinosus (D. farinosus) plants under five different fertilization conditions: organic fertilizer (OF), Bacillus amyloliquefaciens bio-fertilizer (Ba), Bacillus mucilaginosus Krassilnikov bio-fertilizer (BmK), organic fertilizer plus Bacillus amyloliquefaciens bio-fertilizer (OFBa), and organic fertilizer plus Bacillus mucilaginosus Krassilnikov bio-fertilizer (OFBmK). We conducted 16S rRNA sequencing and liquid chromatography/mass spectrometry (LC-MS) to evaluate the soil bacterial composition and soil metabolic activity in the different treatment groups. The results demonstrate that all the fertilization conditions altered the soil bacterial community composition. Moreover, the combination of organic and microbial fertilizers (i.e., in the OFBa and OFBmK groups) significantly affected the relative abundance of soil bacterial species; the largest number of dominant microbial communities were found in the OFBa group, which were strongly correlated with each other. Additionally, non-targeted metabolomics revealed that the levels of soil lipids and lipid-like molecules, and organic acids and their derivatives, were greatly altered under all treatment conditions. The levels of galactitol, guanine, and deoxycytidine were also markedly decreased in the OFBa and OFBmK groups. Moreover, we constructed a regulatory network to delineated the relationships between bamboo phenotype, soil enzymatic activity, soil differential metabolites, and dominant microbial. The network revealed that bio-organic fertilizers promoted bamboo growth by modifying the soil microbiome and metabolome. Accordingly, we concluded that the use of organic fertilizers, microbial fertilizers, or their combination regulated bacterial composition and soil metabolic processes. These findings provide new insights into how D. farinosus-bacterial interactions are affected by different fertilization regiments, which are directly applicable to the agricultural cultivation of bamboo.

Physically separated soil organic matter pools as indicators of carbon and nitrogen change under long-term fertilization in a Chinese Mollisol

Isolation and quantification of soil organic matter (SOM) pools under the influence of management practices is needed for assessing the changes in soil fertility. However, the knowledge on how the active, slow and passive pools of SOM respond to long-term fertilization is scarce. Therefore, the present study was designed to isolate the active, slow, and passive pools of soil organic matter through physical fractionation under long-term fertilization. The treatments included; inorganic fertilization (NPK) either alone or combined with a normal dose of manure (MNPK) or a high dose of manure (1.5MNPK) with an unfertilized control (CK) for comparison. The isolated pools were analyzed and compared for their sizes, SOC and TN storage and their contribution to total SOC and TN sequestration. The results revealed that the fertilization enhanced the active, slow and passive pools of SOC and TN and their storage under applied treatments was patterned as 1.5MNK > MNPK > NPK > CK. The highest SOC and TN storage was observed in the active pool, while, greater response to fertilization (in terms of response ratio) was associated with the slow pool. Results show that fertilization enhanced the proportion of SOC and TN stocks to bulk SOC and TN stocks in active and slow pools, while a diminishing trend was found for passive pools. Moreover, the highest response ratio was found for TN sequestration in each pool as compared to SOC, suggesting preferential accumulation of TN over SOC in the studied soil. Nevertheless, the highest SOC and TN storage took place in the active pool. The slow pool showed greater response to applied fertilizer, with the highest values being observed under 1.5MNPK. This study concluded that long-term manure + inorganic fertilization is crucial for enhancing C and N sequestration by altering the size and response of SOM pools.