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Vignot S, Frampton GM, Soria JC, Yelensky R, Commo F, Brambilla C, Palmer G, Moro-Sibilot D, Ross JS, Cronin MT, André F, Stephens PJ, Lazar V, Miller VA, Brambilla E. Next-Generation Sequencing Reveals High Concordance of Recurrent Somatic Alterations Between Primary Tumor and Metastases From Patients With Non–Small-Cell Lung Cancer. J Clin Oncol 2013; 31:2167-72. [PMID: 23630207 DOI: 10.1200/jco.2012.47.7737] [Citation(s) in RCA: 142] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Purpose Characterization of the genomic changes that drive an individual patient's disease is critical in management of many cancers. In patients with non–small-cell lung cancer (NSCLC), obtaining tumor samples of sufficient size for genomic profiling on recurrence is often challenging. We undertook this study to compare genomic alterations identified in archived primary tumors from patients with NSCLC with those identified in metachronous or synchronous metastases. Patients and Methods Primary and matched metastatic tumor pairs from 15 patients were analyzed by using a targeted next-generation sequencing assay in a Clinical Laboratory Improvement Amendments laboratory. Genomic libraries were captured for 3,230 exons in 182 cancer-related genes plus 37 introns from 14 genes often rearranged in cancer and sequenced to high coverage. Results Among 30 tumors, 311 genomic alterations were identified of which 63 were known recurrent (32 in primary tumor, 31 in metastasis) and 248 were nonrecurrent (likely passenger). TP53 mutations were the most frequently observed recurrent alterations (12 patients). Tumors harbored two or more (maximum four) recurrent alterations in 10 patients. Comparative analysis of recurrent alterations between primary tumor and matched metastasis revealed a concordance rate of 94% compared with 63% for likely passenger alterations. Conclusion This high concordance suggests that for the purposes of genomic profiling, use of archived primary tumor can identify the key recurrent somatic alterations present in matched NSCLC metastases and may provide much of the relevant genomic information required to guide treatment on recurrence.
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Affiliation(s)
- Stéphane Vignot
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Garrett M. Frampton
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Jean-Charles Soria
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Roman Yelensky
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Frédéric Commo
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Christian Brambilla
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Gary Palmer
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Denis Moro-Sibilot
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Jeffrey S. Ross
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Maureen T. Cronin
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Fabrice André
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Philip J. Stephens
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Vladimir Lazar
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Vincent A. Miller
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
| | - Elisabeth Brambilla
- Stéphane Vignot, Jean-Charles Soria, Frédéric Commo, and Fabrice André, Institut National de la Santé et de la Recherche Médicale (INSERM) U981; Vladimir Lazar, Unité de Génomique Fonctionnelle, Institut Gustave Roussy, Villejuif; Christian Brambilla, Denis Moro-Sibilot, and Elisabeth Brambilla, Centre Hospitalier Universitaire Albert Michallon, INSERM U823, Grenoble, France; Garrett M. Frampton, Roman Yelensky, Gary Palmer, Jeffrey S. Ross, Maureen T. Cronin, Philip J. Stephens, Vincent A. Miller,
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