Anion Recognition in Water: Recent Advances from a Supramolecular and Macromolecular Perspective

Highly selective and sensitive macrocycle-based dinuclear foldamer for fluorometric and colorimetric sensing of citrate in water

The selective detection of citrate anions is essential for various biological functions in living systems. A quantitative assessment of citrate is required for the diagnosis of various diseases in the human body; however, it is extremely challenging to develop efficient fluorescence and color-detecting molecular probes for sensing citrate in water. Herein, we report a macrocycle-based dinuclear foldamer (1) assembled with eosin Y (EY) that has been studied for anion binding by fluorescence and colorimetric techniques in water at neutral pH. Results from the fluorescence titrations reveal that the 1·EY ensemble strongly binds citrate anions, showing remarkable selectivity over a wide range of inorganic and carboxylate anions. The addition of citrate anions to the 1·EY adduct led to a large fluorescence enhancement, displaying a detectable color change under both visible and UV light in water up to 2 μmol. The biocompatibility of 1·EY as an intracellular carrier in a biological system was evaluated on primary human foreskin fibroblast (HF) cells, showing an excellent cell viability. The strong binding properties of the ensemble allow it to be used as a highly sensitive, detective probe for biologically relevant citrate anions in various applications.

Azo group(s) in selected macrocyclic compounds

Azobenzene derivatives due to their photo- and electroactive properties are an important group of compounds finding applications in diverse fields. Due to the possibility of controlling the trans-cis isomerization, azo-bearing structures are ideal building blocks for development of e.g. nanomaterials, smart polymers, molecular containers, photoswitches, and sensors. Important role play also macrocyclic compounds well known for their interesting binding properties. In this article selected macrocyclic compounds bearing azo group(s) are comprehensively described. Here, the relationship between compounds' structure and their properties (as e.g. ability to guest complexation, supramolecular structure formation, switching and motion) is reviewed.

Development of pyrene-stacked carbon nanotube-based hybrid: measurement of NO3− ions using fluorescence spectroscopy

CNT@pyrene hybrid for fluorescent recognition of nitrate ions.

Ion-pair electrostatic attraction-enhanced donor–acceptor interactions between the prototypic 1,4-dialkoxybenzene-viologen binding mode in water

Intermolecular ion-pair electrostatic attraction was demonstrated to remarkably enhance the donor–acceptor interaction between prototypic 1,4-dialkoxybenzene and viologen in water.

A square planar gold(iii) bis-(1,1′-dimethyl-3,3′-methylene-diimidazol-2,2′-diylidene) trication as an efficient and selective receptor towards halogen anions: the cooperative effect of Au⋯X and X⋯HC interactions

A tetra-NHC gold(iii) complex acts as anion sensor.

Balancing the acidity of the pendant urea arm of bis-heteroleptic ruthenium(ii) complex containing pyridyl triazole for improved oxyanion recognition

The effect of the acidity of the pendant urea –NH protons on oxyanion recognition, luminiscence OFF–ON sensing and extraction is demonstrated.

Hydrogen-bonding cyclodiphosphazanes: superior effects of 3,5-(CF3)2-substitution in anion-recognition and counter-ion catalysis

Syntheses, X-ray characterization and employment of new cyclodiphosph(v)azane hydrogen-bonding catalysts in experimental and computational anion recognition and the N-acyl-Mannich reaction.

A pyrrole-containing cleft-type halogen bonding receptor for oxoanion recognition and sensing in aqueous solvent media

A halogen bonding pyrrole-bis(iodotriazolium) motif facilitates rarely observed augmented binding affinities and selective sensing of oxoanions (H₂PO₄⁻ and SO₄²⁻).

High-affinity and selective detection of pyrophosphate in water by a resorcinarene salt receptor

Pyrophosphate (PPi) is a byproduct of DNA and RNA synthesis, and abnormal levels are indicative of disease. We report the high-affinity binding of PPi in water by N-alkyl ammonium resorcinarene chloride receptors. Experimental analysis using ¹H and ³¹P NMR, isothermal titration calorimetry, mass spectrometry, and UV-vis spectroscopy all support exceptional selectivity of these systems for PPi in water. The measured affinity of K₁ = 1.60 × 10⁷ M^-1 for PPi is three orders of magnitude larger than that observed for binding to another phosphate, ATP. This exceptional anion-binding affinity in water is explored through a detailed density functional theory computational study. These systems provide a promising avenue for the development of future innovative medical diagnostic tools.

Anion Recognition in Aqueous Media by Cyclopeptides and Other Synthetic Receptors

Anion receptors often rely on coordinative or multiple ionic interactions to be active in water. In the absence of such strong interactions, anion binding in water can also be efficient, however, as demonstrated by a number of anion receptors developed in recent years. The cyclopeptide-derived receptors comprising an alternating sequence of l-proline and 6-aminopicolinic acid subunits are an example. These cyclopeptides are neutral and, at first sight, can only engage in hydrogen-bond formation with an anionic substrate. Nevertheless, they even interact with strongly solvated sulfate anions in water. The intrinsic anion affinity of these cyclopeptides can be related to structural aspects of their highly preorganized concave binding site, which comprises a wall of hydrophobic proline units arranged around the peptide NH groups at the cavity base. When anions are incorporated into this cavity they can engage in hydrogen-bonding interactions to the NH groups, and complex formation also benefits from cavity dehydration. Formation of 1:1 complexes, in which an anion binds to a single cyclopeptide ring, is associated with only small stability constants, however, whereas significantly more stable complexes are formed if the anion is buried between two cyclopeptide molecules. A major contribution to the formation of these sandwich complexes derives from the addition of the second ring to the initially formed 1:1 cyclopeptide-anion complex. This step brings the apolar proline residues of both cyclopeptides in close proximity, which causes the resulting structure to be stabilized to a large extent by hydrophobic effects. Solvent dependent binding studies provided an estimate to which degree these solvent effects contribute to the overall complex stability. In these studies, bis(cyclopeptides) were used, featuring two cyclopeptide rings covalently connected via linkers that enable both rings to simultaneously interact with the anion. Bis(cyclopeptides) with additional solubilizing groups allowed binding studies in a wide range of solvents, including in water. The systematic analysis of the solvent dependence of anion affinity yielded a quantitative correlation between complex stability and parameters relating to the solvation of the anions and solvent properties, confirming that solvent effects contribute to anion binding. Interestingly, the thermodynamic signature of complex formation in water mirrors that of sulfate binding to a protein complex but is opposite to that of other recently described anion receptors, which also do not engage in ionic or coordinative interactions with the substrate. These receptors not only differ in terms of the thermodynamics of binding from the cyclopeptides but also possess a characteristically different anion selectivity in that they prefer to bind weakly coordinating anions but fail to bind sulfate. Solvent effects likely control the anion binding of both receptors types but their impact on complex formation and anion selectivity seems to be profoundly different. Future work in the area of anion coordination chemistry will benefit from the deeper understanding of these effects and how they can be controlled.

Ionization and Anion-π+ Interaction: A New Strategy for Structural Design of Aggregation-Induced Emission Luminogens

Recent years have witnessed the significant role of anion-π⁺ interactions in many areas, which potentially brings the opportunity for the development of aggregation-induced emission (AIE) systems. Here, a new strategy that utilized anion-π⁺ interactions to block detrimental π-π stacking was first proposed to develop inherent-charged AIE systems. Two AIE-active luminogens, namely, 1,2,3,4-tetraphenyloxazolium (TPO-P) and 2,3,5-triphenyloxazolium (TriPO-PN), were successfully synthesized. Comprehensive techniques such as single-crystal analysis, theoretical calculation, and conductivity measurement were used to illustrate the effects of anion-π⁺ interactions on the AIE feature. Their analogues tetraphenylfuran (TPF) and 2,4,5-triphenyloxazole (TriPO-C) without anion-π⁺ interactions suffered from the aggregation-caused emission quenching in the aggregate state, demonstrating the important role of anion-π⁺ interactions in suppressing π-π stacking. TriPO-PN was biocompatible and could specifically target lysosome in fluorescence turn-on and wash-free manners. This suggested that it was a promising contrast agent for bioimaging.

Halogen Bonds Formed between Substituted Imidazoliums and N Bases of Varying N-Hybridization

Heterodimers are constructed containing imidazolium and its halogen-substituted derivatives as Lewis acid. N in its sp³, sp² and sp hybridizations is taken as the electron-donating base. The halogen bond is strengthened in the Cl < Br < I order, with the H-bond generally similar in magnitude to the Br-bond. Methyl substitution on the N electron donor enhances the binding energy. Very little perturbation arises if the imidazolium is attached to a phenyl ring. The energetics are not sensitive to the hybridization of the N atom. More regular patterns appear in the individual phenomena. Charge transfer diminishes uniformly on going from amine to imine to nitrile, a pattern that is echoed by the elongation of the C-Z (Z=H, Cl, Br, I) bond in the Lewis acid. These trends are also evident in the Atoms in Molecules topography of the electron density. Molecular electrostatic potentials are not entirely consistent with energetics. Although I of the Lewis acid engages in a stronger bond than does H, it is the potential of the latter which is much more positive. The minimum on the potential of the base is most negative for the nitrile even though acetonitrile does not form the strongest bonds. Placing the systems in dichloromethane solvent reduces the binding energies but leaves intact most of the trends observed in vacuo; the same can be said of ∆G in solution.

An Ionophore-Based Anion-Selective Optode Printed on Cellulose Paper

A general anion-sensing platform is reported based on a portable and cost-effective ion-selective optode and a smartphone detector equipped with a color analysis app. In contrast to traditional anion-selective optodes using a hydrophobic polymer and/or plasticizer to dissolve hydrophobic sensing elements, the new optode relies on hydrophilic cellulose paper. The anion ionophore and a lipophilic pH indicator are inkjet-printed and adsorbed on paper and form a "dry" hydrophobic sensing layer. Porous cellulose sheets also allow the sensing site to be modified with dried buffer that prevents any sample pH dependence of the observed color change. A highly selective fluoride optode using an Al^III -porphyrin ionophore is examined as an initial example of this new anion sensing platform for measurements of fluoride levels in drinking water samples. Apart from Lewis acid-base recognition, hydrogen bonding recognition is also compatible with this sensing platform.

Effects of Solvent Properties on the Anion Binding of Neutral Water-Soluble Bis(cyclopeptides) in Water and Aqueous Solvent Mixtures

In this study, the anion-binding bis(cyclopeptide) 2 is introduced, which dissolves freely in water, affording up to 10 mM concentrations, thanks to triethylene glycol-derived substituents in the cyclopeptide subunits and the linker connecting them. Binding studies provided evidence that the anion affinity previously demonstrated for less-soluble analogs of this compound is retained under highly competitive aqueous conditions. The highest affinity in water was observed for iodide, closely followed by sulfate anions, whereas binding of soft and weakly coordinating anions could not be observed. The anion selectivity of 2 thus differs from that of other recently described receptors, which also do not require electrostatic or coordinative interactions for anion binding in water but typically fail to bind strongly coordinating sulfate anions. The ability of 2 to overcome sulfate hydration is attributed to the special mode of binding, combining direct N-H···A- interactions with the release of water molecules from the receptor cavity. The characterization of the anion binding of 2 and a related bis(cyclopeptide) in a variety of different solvents and aqueous solvent mixtures furthermore allowed the correlation of the binding properties with solvent parameters. These analyses provided qualitative and even quantitative insights into the solvent properties and solvation phenomena that mainly affect anion complexation.

Use of Dimethyl Pimelimidate with Microfluidic System for Nucleic Acids Extraction without Electricity

The isolation of nucleic acids in the lab on a chip is crucial to achieve the maximal effectiveness of point-of-care testing for detection in clinical applications. Here, we report on the use of a simple and versatile single-channel microfluidic platform that combines dimethyl pimelimidate (DMP) for nucleic acids (both RNA and DNA) extraction without electricity using a thin-film system. The system is based on the adaption of DMP into nonchaotropic-based nucleic acids and the capture of reagents into a low-cost thin-film platform for use as a microfluidic total analysis system, which can be utilized for sample processing in clinical diagnostics. Moreover, we assessed the use of the DMP system for the extraction of nucleic acids from various samples, including mammalian cells, bacterial cells, and viruses from human disease, and we also confirmed that the quality and quantity of the nucleic acids extracted were sufficient to allow for the robust detection of biomarkers and/or pathogens in downstream analysis. Furthermore, this DMP system does not require any instruments and electricity, and has improved time efficiency, portability, and affordability. Thus, we believe that the DMP system may change the paradigm of sample processing in clinical diagnostics.

Air- and Light-Stable P4 and As4 within an Anion-Coordination-Based Tetrahedral Cage

In contrast to the stable dinitrogen molecule, white phosphorus (P₄) and yellow arsenic (As₄) are very reactive allotropic modifications of these two heavier pnictogen elements, which has greatly hampered the study of their properties and applications. Thus, the safe storage and transport of them is imperative. Supramolecular caged structures are one of the most efficient approaches for the encapsulation and stabilization of reactive species; however, their use in the P₄ and As₄ chemistry is very rare. In the current work, we demonstrate a new design strategy for constructing finite cages and including guests based on anion coordination chemistry. The phosphate-coordination-based tetrahedral cages can readily accommodate the tetrahedral guests P₄ and As₄, which is facilitated by the shape and size complementarity as well as favorable σ-π and lone-pair-π interactions. Moreover, the latter case represents the first example of As₄ inclusion in a well-defined tetrahedral cage.

Chiral hemicucurbit[8]uril as an anion receptor: selectivity to size, shape and charge distribution

A novel eight-membered macrocycle of the hemicucurbit[n]uril family, chiral (all-R)-cyclohexanohemicucurbit[8]uril (cycHC[8]) ‡The name cyclohexylhemicucurbituril, previously used for these macrocycles, is changed in accordance with the IUPAC nomenclature for fused cycles, as the cyclohexane substituents are fused with the parent hemicucurbituril. binds anions in a purely protic solvent with remarkable selectivity. The cycHC[8] portals open and close to fully encapsulate anions in a 1 : 1 ratio, resembling a molecular Pac-Man™. Comprehensive gas, solution and solid phase studies prove that the binding is governed by the size, shape and charge distribution of the bound anion. Gas phase studies show an order of SbF6- ≈ PF6- > ReO4- > ClO4- > SCN- > BF4- > HSO4- > CF3SO3- for anion complexation strength. An extensive crystallographic study reveals the preferred orientations of the anions within the octahedral cavity of cycHC[8] and highlights the importance of the size- and shape-matching between the anion and the receptor cavity. The solution studies show the strongest binding of the ideally fitting SbF6- anion, with an association constant of 2.5 × 105 M-1 in pure methanol. The symmetric, receptor cavity-matching charge distribution of the anions results in drastically stronger binding than in the case of anions with asymmetric charge distribution. Isothermal titration calorimetry (ITC) reveals the complexation to be exothermic and enthalpy-driven. The DFT calculations and VT-NMR studies confirmed that the complexation proceeds through a pre-complex formation while the exchange of methanol solvent with the anion is the rate-limiting step. The octameric cycHC[8] offers a unique example of template-controlled design of an electroneutral host for binding large anions in a competitive polar solvent.

Supramolecular anion recognition in water: synthesis of hydrogen-bonded supramolecular frameworks

The interaction of tetratopic amidinium-containing receptors with terephthalate anions leads to porous framework materials assembled through charge-assisted hydrogen bonds. The frameworks form in good yield within minutes in water at room temperature, but no framework material is obtained if other anions (Cl^-, Br^-, NO₃^-, SO₄^2- or isophthalate^2-) are used in place of terephthalate. Two forms of the framework can be prepared: one with a connected pore network, and a more dense phase with discrete voids. We demonstrate that these are the kinetic and thermodynamic products, respectively. Either framework can be prepared independently and can be converted to the other form in response to stimuli. Furthermore, the frameworks can be controllably disassembled and reassembled in response to acid/base triggers suggesting that this new class of materials may have applications in the selective encapsulation and release of guests.

Anion Recognition as a Supramolecular Switch of Cell Internalization

The cell internalization of designed oligoarginine peptides equipped with six glutamic acid residues and an anionic pyranine at the N-terminus is triggered upon addition of a supramolecular host. This host binds specifically to the pyranine moiety, enabling the complex to traverse the cell membrane. Interestingly, none of the components, neither the host nor the guest, are able to cross the cell membrane on their own.

Tripodal halogen bonding iodo-azolium receptors for anion recognition

The preparation and anion binding properties of 1,3,5-tri-substituted benzene platform-based tripodal receptors containing halogen bonding (XB) iodo-imidazolium and iodo-triazolium motifs, and hydrogen bonding (HB) analogues are described.

A ruthenium(iii) complex derived from N,N′-bis(salicylidene)ethylenediamine as a chemosensor for the selective recognition of acetate and its interaction with cells for bio-imaging: experimental and theoretical studies

A ruthenium(iii) complex ofN,N′-bis(salicylidene)ethylenediamine (L¹) was used as chemosensor for the recognition of acetate in cells for bio-imaging.

Selective perrhenate recognition in pure water by halogen bonding and hydrogen bonding alpha-cyclodextrin based receptors

Alpha-cyclodextrin based anion receptors containing halogen and hydrogen bond donor motifs display selective association of perrhenate in neutral aqueous media.

Comparison of halide receptors based on H, halogen, chalcogen, pnicogen, and tetrel bonds

A series of halide receptors are constructed and the geometries and energetics of their binding to F⁻, Cl⁻, and Br⁻assessed by quantum calculations. The dicationic receptors are based on a pair of imidazolium units, connectedviaa benzene spacer. The imidazoliums each donate a proton to a halide in a pair of H-bonds. Replacement of the two bonding protons by Br leads to bindingviaa pair of halogen bonds. Likewise, chalcogen, pnicogen, and tetrel bonds occur when the protons are replaced, respectively, by Se, As, and Ge. Regardless of the binding group considered, F⁻is bound much more strongly than are Cl⁻and Br⁻. With respect to the latter two halides, the binding energy is not very sensitive to the nature of the binding atom, whether H or some other atom. But there is a great deal of differentiation with respect to F⁻, where the order varies as tetrel > H ∼ pnicogen > halogen > chalcogen. The replacement of the various binding atoms by their analogues in the next row of the periodic table enhances the fluoride binding energy by 22–56%. The strongest fluoride binding agents utilize the tetrel bonds of the Sn atom, whereas it is I-halogen bonds that are preferred for Cl⁻and Br⁻. After incorporation of thermal and entropic effects, the halogen, chalcogen, and pnicogen bonding receptors do not represent much of an improvement over H-bonds with regard to this selectivity for F⁻, even I which binds quite strongly. In stark contrast, the tetrel-bonding derivatives, both Ge and Sn, show by far the greatest selectivity for F⁻over the other halides, as much as 10¹³, an enhancement of six orders of magnitude when compared to the H-bonding receptor.

Selective recognition of oxalate in water: effect of pH on binding strength and sensing mechanisms

New anthracene-containing azacryptands can selectively detect oxalate in a buffered aqueous solution at pH 6.2 showing a 10-fold fluorescence enhancement.

Efficient and selective separation of aqueous sulfate through recognition and precipitation

Sulfate anions are selectively separated from aqueous solution in the form of precipitates by a mono-protonated organic receptor, constructed in situ through anion-templated chemical synthesis.

Insight into the deprotonation at the half-equivalence point of (thio)amido-benzimidazoles in the presence of anions

Three crystallographic structures highlight the acid–base half-equivalence point of hydrogen-bond donor (thio)amido-benzimidazoles induced by fluoride or benzoate salts with concomitant hydrogen-bonding and deprotonation as a merged synergic process.

Ion-pair recognition by a neutral [2]rotaxane based on a bis-calix[4]pyrrole cyclic component

In this work, we report our investigations on the synthesis of a [2]rotaxane based on a bis(calix[4]pyrrole) cyclic component and a 3,5-bis-amidepyridyl-N-oxide derivative axle. We isolated the [2]rotaxane in a significant 50% yield through an optimized "in situ" capping strategy using the copper(i)-catalyzed azide-alkyne cycloaddition reaction. The synthetic precursor of the [2]rotaxane, featuring [2]pseudorotaxane topology, could be quantitatively assembled in solution in the presence of one equivalent of tetrabutylammonium chloride or cyanate salts producing a four-particle aggregate. However, we observed that the addition of the salt was deleterious not only for the isolation of the [2]rotaxane in its pure form but, more important, for the optimal performance of the copper catalyst. We probed the interaction of the prepared [2]rotaxane with tetraalkylammonium salts of chloride, nitrate and cyanate anions by means of 1H NMR titrations and ITC experiments. We show that in chloroform solution the [2]rotaxane functions as an efficient heteroditopic receptor for the salts forming thermodynamically and kinetically highly stable ion-paired complexes with 1 : 1 stoichiometry. At millimolar concentration and using 1H NMR spectroscopy we observed that the addition of more than 1 equiv. of the salt induced the gradual disassembly of the 1 : 1 complex of the [2]rotaxane and the concomitant formation of higher stoichiometry aggregates i.e. 2 : 1 complexes.

Beryllium-based fluorenes as efficient anion sponges

The F⁻, Cl⁻, CN⁻, NO₂⁻, NO₃⁻, and SO₄²⁻ anion affinities of 4,5-bis(BeX)-fluorene (X = H, F, Cl, CN, NC, and OCH₃) derivatives have been calculated at the B3LYP/6-311+G(3df,2p)//B3LYP/6-31+G(d,p) level of theory.

Effect of buffer at nanoscale molecular recognition interfaces – electrostatic binding of biological polyanions

The electrostatic binding of polyanionic heparin by cationic receptors is highly dependent on the buffer in which the binding assay is carried out.

Cationic pTyr/pSer imprinted polymers based on a bis-imidazolium host monomer: phosphopeptide recognition in aqueous buffers demonstrated by μ-liquid chromatography and monolithic columns

Capillary monoliths featuring grafted molecularly imprinted polymer films incorporating on a bis-imidazolium host monomer, displayed a remarkable crossreactivity with phosphorylated peptides in buffered media.